 Stem-loop coverage
profile for L1P1 family of human L1 retrotransposons
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DNAStructProfiler accepts sequences in fasta format. Secondary structure annotation files are accepted in a standard bedGraph format containing coordinates of the structures. The tool can be used with any program that searches for DNA/RNA secondary structures, such as stem-loops, quadruplexes, triplex DNA, and any other structures of interest. The DNAStructProfiler can work in two modes: single and multiple. The single mode allows the users to reconstruct one summary plot for all the sequences from the submitted file. In the multiple mode every sequence is analyzed individually, and the profiles are constructed for each sequence separately. Download: DNAStrucProfiler.tgz For questions and comments please send an e-mail to: daria.grechishnikova@gmail.com |
