The Graphics Panel consists of two graphical images: Upper Graph and Lower Graph.
With the Type drop-down menu the user can choose the way of a palindrome/repeat visualization. Three visualization types are available: histograms, noise and pics.
The Elements drop-down menu allows the user to choose the type of the structures: palindromes, direct repeats or both.
The Gene pane allows the user to browse by the gene PID (Protein Identification Number) or by the gene location.
At the DNA Region pane the user can set up the DNA region boundaries in nucleotide positions.
The pane Scale shows the number of symbols (in bp) for one histogram bar.
Panes Stems, Loops and Repeats shows the number of repeats and palindromes of each type.
obtain detailed information about the detected structures the user can
select a region (left button down and drag) from the Upper Graph, which will then be
depicted in the Lower Graph in
moving the cursor over palindromes or direct repeats in the Lower Graph
a pop-up window will appear showing structure info in the following
order: the sequence, start and end positions, number of times this
sequence is found in the whole genome, gene PID if the sequence is
found inside a gene or zero if the sequence belongs to an intergenic