|
The "DNA
Punctuation" program searches for and visualizes short
palindromes and direct repeats in DNA of different
organisms, from bacteria to humans. The current version
of "DNA Punctuation" performs a fast search for perfect
structures. Its user-friendly graphical interface helps
to locate the identified sequences on the level of the
whole genome or individual gene or intergenic regions.
Implemented functionalities: - The program
accepts DNA sequences in FASTA (.fna | .txt) format.
Gene location files must be loaded in protein table
(.ptt) format.
- The user
can set up search parameters, such as stem, loop and
repeat lengths within a range of minimum and maximum
values. Paramters should be modified in the main
program.
|
| Download: dnapunctuation.c For questions and comments please send e-mail to: maria,poptsova@gmail.com |
