BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717718|ref|YP_003873250.1| chromosomal replication initiator protein DnaA [Spirochaeta thermophila DSM 6192] (452 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431492|ref|NP_147998.2| replication factor C large subunit... 45 3e-06 >gi|118431492|ref|NP_147998.2| replication factor C large subunit [Aeropyrum pernix K1] Length = 479 Score = 45.4 bits (106), Expect = 3e-06 Identities = 51/196 (26%), Positives = 94/196 (47%), Gaps = 24/196 (12%) Query: 150 LIYGGVGLGKTHLLQSIGNSVYGEFHNLKVVYVTAEEFTN----EFIASIQNKETHKFKT 205 L+YG G+GKT L+++I + EF NL+++ + A ++ E I +++ FK Sbjct: 53 LLYGPPGVGKTSLVEAIAS----EF-NLEMIELNASDYRRRSDIERIVGAASRKRSMFK- 106 Query: 206 KYRNVDVLLIDDIHFFMNKTETQEELFHTFNALYDANKQMVFTCDRPVSELKNISHRLRS 265 R V V+L+D++ +N E + + + +V T + P + LR Sbjct: 107 --RGV-VILLDEVD-GINPREDAGGIEALLSVIKTTENPIVMTANDPWKDF------LRP 156 Query: 266 RFERGLNVDLQPPSFETRYAILKKKIEQKTVHIPDEVITFIAEHVTTNVRDLEAALTKLI 325 E L V+ +P + A+L++ E + + E + +IAE + DL +A+ L Sbjct: 157 LREVSLMVEFRPLTLTHIVAVLQRICEAERIECEREALRYIAER---SEGDLRSAINDLQ 213 Query: 326 AYAELVHRDITIDIAK 341 A AE R +T+ +A+ Sbjct: 214 AVAEGYGR-VTLTLAR 228 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 383,148 Number of Sequences: 1700 Number of extensions: 14639 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 1 length of query: 452 length of database: 492,079 effective HSP length: 80 effective length of query: 372 effective length of database: 356,079 effective search space: 132461388 effective search space used: 132461388 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717719|ref|YP_003873251.1| DNA polymerase III subunit beta [Spirochaeta thermophila DSM 6192] (367 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 342,662 Number of Sequences: 1700 Number of extensions: 15237 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 367 length of database: 492,079 effective HSP length: 78 effective length of query: 289 effective length of database: 359,479 effective search space: 103889431 effective search space used: 103889431 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717720|ref|YP_003873252.1| DNA replication and repair protein RecF [Spirochaeta thermophila DSM 6192] (363 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 351,952 Number of Sequences: 1700 Number of extensions: 15369 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 0 length of query: 363 length of database: 492,079 effective HSP length: 78 effective length of query: 285 effective length of database: 359,479 effective search space: 102451515 effective search space used: 102451515 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717721|ref|YP_003873253.1| hypothetical protein STHERM_c00040 [Spirochaeta thermophila DSM 6192] (149 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 137,892 Number of Sequences: 1700 Number of extensions: 4769 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 149 length of database: 492,079 effective HSP length: 69 effective length of query: 80 effective length of database: 374,779 effective search space: 29982320 effective search space used: 29982320 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717722|ref|YP_003873254.1| transposase for insertion sequence element ISRM5 [Spirochaeta thermophila DSM 6192] (412 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 390,577 Number of Sequences: 1700 Number of extensions: 16358 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 412 length of database: 492,079 effective HSP length: 79 effective length of query: 333 effective length of database: 357,779 effective search space: 119140407 effective search space used: 119140407 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717723|ref|YP_003873255.1| 50S ribosomal protein L34 [Spirochaeta thermophila DSM 6192] (51 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.132 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,295 Number of Sequences: 1700 Number of extensions: 399 Number of successful extensions: 1 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 51 length of database: 492,079 effective HSP length: 24 effective length of query: 27 effective length of database: 451,279 effective search space: 12184533 effective search space used: 12184533 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717724|ref|YP_003873256.1| hypothetical protein STHERM_c00070 [Spirochaeta thermophila DSM 6192] (93 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.142 0.502 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 113,017 Number of Sequences: 1700 Number of extensions: 4075 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 93 length of database: 492,079 effective HSP length: 61 effective length of query: 32 effective length of database: 388,379 effective search space: 12428128 effective search space used: 12428128 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717725|ref|YP_003873257.1| hypothetical protein STHERM_c00080 [Spirochaeta thermophila DSM 6192] (573 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 529,985 Number of Sequences: 1700 Number of extensions: 24050 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 573 length of database: 492,079 effective HSP length: 82 effective length of query: 491 effective length of database: 352,679 effective search space: 173165389 effective search space used: 173165389 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717726|ref|YP_003873258.1| hypothetical protein STHERM_c00090 [Spirochaeta thermophila DSM 6192] (222 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 206,214 Number of Sequences: 1700 Number of extensions: 8376 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 222 length of database: 492,079 effective HSP length: 73 effective length of query: 149 effective length of database: 367,979 effective search space: 54828871 effective search space used: 54828871 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717727|ref|YP_003873259.1| glycine cleavage system H protein [Spirochaeta thermophila DSM 6192] (128 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431270|ref|NP_147622.2| glycine cleavage system protein H ... 125 4e-31 >gi|118431270|ref|NP_147622.2| glycine cleavage system protein H [Aeropyrum pernix K1] Length = 143 Score = 125 bits (314), Expect = 4e-31 Identities = 57/125 (45%), Positives = 85/125 (68%) Query: 4 RDDVRYASTHEWARREGDVVVCGISDYAQDSLGDVVFVQLPEVGVVKKRGEAFGVVESVK 63 R D+RY + EWAR E V GI+D+AQ L D+V V+LPE G K+GEA VES+K Sbjct: 18 RKDLRYTESDEWARLEDGVATVGITDFAQKELKDIVGVELPEKGRKVKKGEAVATVESIK 77 Query: 64 TTSDVHMPVSGKIVEINETLKERPDLLNTSPFEEGWLVKLQPTDPAELEELLSADDYRKY 123 T+D++ P+SG+IV++NE L ++P+L+N P+ EGW+ K++ DP E E LL+ + Y + Sbjct: 78 ATADIYAPLSGEIVDVNEKLLDQPELINDDPYGEGWIFKIKVEDPGEFESLLTPEQYVES 137 Query: 124 VEEEE 128 V + + Sbjct: 138 VRKRK 142 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 137,463 Number of Sequences: 1700 Number of extensions: 5800 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 1 length of query: 128 length of database: 492,079 effective HSP length: 67 effective length of query: 61 effective length of database: 378,179 effective search space: 23068919 effective search space used: 23068919 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717728|ref|YP_003873260.1| UDP-glucose 6-dehydrogenase [Spirochaeta thermophila DSM 6192] (441 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 477,101 Number of Sequences: 1700 Number of extensions: 22548 Number of successful extensions: 86 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86 Number of HSP's gapped (non-prelim): 0 length of query: 441 length of database: 492,079 effective HSP length: 80 effective length of query: 361 effective length of database: 356,079 effective search space: 128544519 effective search space used: 128544519 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717729|ref|YP_003873261.1| adenosylhomocysteinase [Spirochaeta thermophila DSM 6192] (471 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431131|ref|NP_147374.2| S-adenosyl-L-homocysteine hydrolas... 330 3e-92 >gi|118431131|ref|NP_147374.2| S-adenosyl-L-homocysteine hydrolase [Aeropyrum pernix K1] Length = 416 Score = 330 bits (847), Expect = 3e-92 Identities = 193/451 (42%), Positives = 260/451 (57%), Gaps = 45/451 (9%) Query: 8 YRVKEIGLAEAGRAAIEMAEKEMPGLMALREKYGDAKPLAGARISGSLHMTVETAVLIET 67 ++V+++ LA GR IE AE+ MP LM LR G KPL+G R++ LH+T ETAVL+ET Sbjct: 5 FKVRDLSLAGEGRMQIEWAERHMPVLMRLRSSMGGDKPLSGVRVAACLHVTKETAVLVET 64 Query: 68 LRLLGAEVRWASCNIYSTQDHXXXXXXXXGIPVYAWKGETLEEY-WECTLNALTFXXXXX 126 LR GAEV A N STQD GI V+AW+G T EEY W + A Sbjct: 65 LRKWGAEVYLAPSNPLSTQDEVAAALAEAGIGVFAWRGMTPEEYKWALSTVAGR------ 118 Query: 127 XXXXXXXXXXATLMIHKGYELEEGSRWVDEPSQSEDERA-LKALLRRVYQEDPHHWHKVV 185 EP D+ A L LL V Sbjct: 119 -----------------------------EPDIVIDDGADLHVLLHE-------EMRSVG 142 Query: 186 ERWKGVSEETTTGVHRLYMLQEQGRLLVPAINVNDSVTKSKFDNIYGCRESLIDGIKRAT 245 E+ G +EETTTGV RL L+ +GRLL P I VND++TK FDN YG +S +DG+ RAT Sbjct: 143 EKVWGGTEETTTGVIRLRALEREGRLLYPVIAVNDALTKFMFDNRYGTGQSTVDGVLRAT 202 Query: 246 DVMIAGKVAVVCGYGDVGKGCAQSLKAFGARVIVTEVDPICALQAAMEGYQVTTVEDTLG 305 +++IAGK VV GYG VG+G A + GA+V+VTEVDP+ AL+AAM+G+ VTT+++ Sbjct: 203 NILIAGKTVVVAGYGWVGRGIAARFRGMGAKVVVTEVDPVRALEAAMDGFTVTTMDEAAS 262 Query: 306 IADIYVTATGNVHVITVDHMARMKDQAIVCNIGHFDAEIDVAGLKAASDIVRTAVKPQVD 365 + D+++TATGN++VI HM +MKD AI+ N GHF+ EI+VA L+ S + + V+ +D Sbjct: 263 LGDVFITATGNINVIDARHMEKMKDGAILANAGHFNVEINVAALEEMS-VSKRRVRRYLD 321 Query: 366 RYTFPDGHSIYVLADGRLVNLGCATGHPAFVMSASFTNQVLAQMDLWXXXXXXXXXXXXL 425 Y PDG +Y++ +GRLVNL A GHP+ VM SF+NQ LA + + + Sbjct: 322 EYRLPDGRRLYLIGEGRLVNLVAAEGHPSEVMDMSFSNQALAVLKIAGERGRLEKRVHRV 381 Query: 426 PKKLDEEVARLHLEKLGVKLTRLTPEQAAYI 456 + DE VARL LE +GV++ LT EQ Y+ Sbjct: 382 ERIQDEMVARLKLETMGVRIDSLTEEQKLYL 412 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 442,766 Number of Sequences: 1700 Number of extensions: 18020 Number of successful extensions: 86 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82 Number of HSP's gapped (non-prelim): 2 length of query: 471 length of database: 492,079 effective HSP length: 80 effective length of query: 391 effective length of database: 356,079 effective search space: 139226889 effective search space used: 139226889 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717730|ref|YP_003873262.1| S-adenosylmethionine synthetase [Spirochaeta thermophila DSM 6192] (388 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 432,071 Number of Sequences: 1700 Number of extensions: 21648 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 0 length of query: 388 length of database: 492,079 effective HSP length: 79 effective length of query: 309 effective length of database: 357,779 effective search space: 110553711 effective search space used: 110553711 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717731|ref|YP_003873263.1| hypothetical protein STHERM_c00140 [Spirochaeta thermophila DSM 6192] (195 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 198,082 Number of Sequences: 1700 Number of extensions: 8807 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 195 length of database: 492,079 effective HSP length: 72 effective length of query: 123 effective length of database: 369,679 effective search space: 45470517 effective search space used: 45470517 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717732|ref|YP_003873264.1| hypothetical protein STHERM_c00150 [Spirochaeta thermophila DSM 6192] (533 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 566,675 Number of Sequences: 1700 Number of extensions: 25478 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 0 length of query: 533 length of database: 492,079 effective HSP length: 81 effective length of query: 452 effective length of database: 354,379 effective search space: 160179308 effective search space used: 160179308 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717733|ref|YP_003873265.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (382 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 354,665 Number of Sequences: 1700 Number of extensions: 15138 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 382 length of database: 492,079 effective HSP length: 78 effective length of query: 304 effective length of database: 359,479 effective search space: 109281616 effective search space used: 109281616 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717734|ref|YP_003873266.1| hypothetical protein STHERM_c00170 [Spirochaeta thermophila DSM 6192] (419 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.142 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 464,865 Number of Sequences: 1700 Number of extensions: 22236 Number of successful extensions: 83 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83 Number of HSP's gapped (non-prelim): 0 length of query: 419 length of database: 492,079 effective HSP length: 79 effective length of query: 340 effective length of database: 357,779 effective search space: 121644860 effective search space used: 121644860 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717735|ref|YP_003873267.1| hypothetical protein STHERM_c00180 [Spirochaeta thermophila DSM 6192] (346 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 347,019 Number of Sequences: 1700 Number of extensions: 16367 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 0 length of query: 346 length of database: 492,079 effective HSP length: 78 effective length of query: 268 effective length of database: 359,479 effective search space: 96340372 effective search space used: 96340372 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717736|ref|YP_003873268.1| hypothetical protein STHERM_c00190 [Spirochaeta thermophila DSM 6192] (186 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 179,656 Number of Sequences: 1700 Number of extensions: 7763 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 186 length of database: 492,079 effective HSP length: 72 effective length of query: 114 effective length of database: 369,679 effective search space: 42143406 effective search space used: 42143406 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717737|ref|YP_003873269.1| hypothetical protein STHERM_c00200 [Spirochaeta thermophila DSM 6192] (539 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 586,699 Number of Sequences: 1700 Number of extensions: 27147 Number of successful extensions: 79 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79 Number of HSP's gapped (non-prelim): 0 length of query: 539 length of database: 492,079 effective HSP length: 81 effective length of query: 458 effective length of database: 354,379 effective search space: 162305582 effective search space used: 162305582 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717738|ref|YP_003873270.1| glutamine-dependent NAD(+) synthetase [Spirochaeta thermophila DSM 6192] (549 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431661|ref|NP_148287.2| NAD synthetase [Aeropyrum pernix K1] 124 8e-30 >gi|118431661|ref|NP_148287.2| NAD synthetase [Aeropyrum pernix K1] Length = 286 Score = 124 bits (310), Expect = 8e-30 Identities = 91/256 (35%), Positives = 139/256 (54%), Gaps = 12/256 (4%) Query: 272 VRGALHLGIRDYLTKTGFDRVHLGLSGGIDSALVATLAVEALGPERVSAFLMPS-QFSSE 330 VR A+ +R YL +G LG+SGG+DS+L LAV+A+G RV+A +MP + + E Sbjct: 20 VRQAITQFLRKYLEASGASGYVLGVSGGVDSSLALALAVDAVGSGRVTALIMPDREVTPE 79 Query: 331 GSVHDAMALAGNLGIQAHTLPIRAVFDTFLSTLEPVFQGLPWD-ITEENIQARIRGTILM 389 V DA+ L + G++ + I + ++S L P+F+ D + N++ARIR IL Sbjct: 80 RDVEDALRLVRSFGVEHAVIDISPIVMVYISAL-PIFEDEEKDRVPVGNLRARIRANILY 138 Query: 390 AYSNKMRSLVLTTGNKSELAVGYCTIYGDTAGALAVIGDLFKTQVYALARHIREDTGVIP 449 Y+NK+ LVL TG++SE +GY T YGD A +A + L+K+QV LA I +P Sbjct: 139 YYANKLGKLVLGTGDRSEYLIGYFTKYGDAACDVAPLTVLYKSQVRRLAELIG-----VP 193 Query: 450 EEILTKPPSAEL-RPNQTDQDSLPPYEVLDQILELYLLRNLTAEDI-IARGFDPDLVRHV 507 +I KP S L + ++ + + Y +D IL + E+I A G + V V Sbjct: 194 RDIAYKPSSPRLWKGHEAEAELGLSYNEIDVILYSRFDLKIPWEEIPRATGLERAKVERV 253 Query: 508 LLMVVRAEHKRRQTPP 523 L+ + HKR +PP Sbjct: 254 RLLHEASSHKR--SPP 267 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 571,637 Number of Sequences: 1700 Number of extensions: 26284 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 1 length of query: 549 length of database: 492,079 effective HSP length: 81 effective length of query: 468 effective length of database: 354,379 effective search space: 165849372 effective search space used: 165849372 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717739|ref|YP_003873271.1| hypothetical protein STHERM_c00220 [Spirochaeta thermophila DSM 6192] (204 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.141 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 176,735 Number of Sequences: 1700 Number of extensions: 6827 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 204 length of database: 492,079 effective HSP length: 73 effective length of query: 131 effective length of database: 367,979 effective search space: 48205249 effective search space used: 48205249 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717740|ref|YP_003873272.1| transporter [Spirochaeta thermophila DSM 6192] (407 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.150 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 347,536 Number of Sequences: 1700 Number of extensions: 14562 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 0 length of query: 407 length of database: 492,079 effective HSP length: 79 effective length of query: 328 effective length of database: 357,779 effective search space: 117351512 effective search space used: 117351512 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717741|ref|YP_003873273.1| hypothetical protein STHERM_c00240 [Spirochaeta thermophila DSM 6192] (207 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.142 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 182,727 Number of Sequences: 1700 Number of extensions: 7355 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 207 length of database: 492,079 effective HSP length: 73 effective length of query: 134 effective length of database: 367,979 effective search space: 49309186 effective search space used: 49309186 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717742|ref|YP_003873274.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6192] (477 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601997|ref|NP_148542.1| prolyl-tRNA synthetase [Aeropyrum p... 278 2e-76 gi|14601532|ref|NP_148072.1| glycyl-tRNA synthetase [Aeropyrum p... 48 5e-07 >gi|14601997|ref|NP_148542.1| prolyl-tRNA synthetase [Aeropyrum pernix K1] Length = 485 Score = 278 bits (712), Expect = 2e-76 Identities = 169/470 (35%), Positives = 240/470 (51%), Gaps = 8/470 (1%) Query: 15 WFVDIVLKAQLADYS--PVKGCMVIRPRGYAIWEKIQSQLDRMFKETGHQNAYFPLLIPE 72 WF ++ A++ DY PVKG V P G+ I ++ + + TGH+ FPLLIPE Sbjct: 17 WFDWVIETAEVYDYGRYPVKGMGVWMPYGFQIRRRVLEVVRGLLDSTGHEEVLFPLLIPE 76 Query: 73 SFLHKEAEHVEGFSPELAVVTHGGGEALEEPLVVRPTSETIIWSMYKKWIQSYRDLPLLI 132 L +E+EH+ GF E+ VTHGG E L+ L +RPTSET I M WI+SYR LP Sbjct: 77 HLLRRESEHIRGFEGEVYWVTHGGREELDVKLALRPTSETSITYMETFWIKSYRQLPKKY 136 Query: 133 NQWANVVRWE-KRTRLFLRTTEFL-WQXXXXXXXXXXXXXXXXLRMLHVYREFAEEYLAL 190 Q ++ R+E K TR +R E ++ L + VY+ + L + Sbjct: 137 YQVVSIFRYETKATRPMIRLREVTTFKEAHTVHESFEDAERQVLEAIEVYKAIFDRLL-I 195 Query: 191 PVFYGRKTESEKFAGAVTTYSIEAMMQDKKALQAGTSHFLGQNFAKAFDVTFQTQAGTLD 250 P ++ E +KFAGA+ T + + +M D +ALQ GT H LGQ+F +AFD Q + LD Sbjct: 196 PYVISKRPEWDKFAGALYTIAFDTIMPDGRALQIGTVHHLGQSFTRAFDFRIQMRDERLD 255 Query: 251 YVWATSWGVSTRLIGAVIMAHSDDRGLVLPPRIAPTQAVIIPIY--TKKTVDQVADYAKR 308 + W TS+GVS R++ ++I H DDRGLV+PP +AP Q V+IPI ++ +V Y + Sbjct: 256 HPWQTSYGVSDRVVASLIAVHGDDRGLVIPPSVAPIQVVVIPITPGDEEKRGKVLTYTAK 315 Query: 309 VFGRLAEAGLSVEMDLDDQNSPGWKFAEWELRGVPIRVEVGPRDMEQEKAVLVRRDTGEK 368 L +AGL V +D + PG KF WE +GVPIRVE+G R+ EQ+ + RRDT EK Sbjct: 316 AAEALEKAGLRVHVDDREWERPGAKFYYWEAKGVPIRVEIGLREAEQDTLTIARRDTLEK 375 Query: 369 RAVSVSRXXXXXXXXXXXXQKTLFRRAKDFRDEHTHYVEDYDSFKRIIED-GGFVFAPWS 427 V + + ++ RAK F E E + + +E G PW Sbjct: 376 TEVPLGEAGNRIRELMAQIESSMRERAKSFFGERLLRTESLEEARDWVEGRRGIAEIPWC 435 Query: 428 GSPDVEARIKEETKATIRVLEFGNEEKASGKNDILTGEPARHIALFAKSY 477 G ++E + + E GK L G PA AK+Y Sbjct: 436 GRESCGLEMEERVNGKVLGTPWPEEPVEEGKRCPLCGRPAVAWIRLAKTY 485 >gi|14601532|ref|NP_148072.1| glycyl-tRNA synthetase [Aeropyrum pernix K1] Length = 583 Score = 48.1 bits (113), Expect = 5e-07 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 7/118 (5%) Query: 251 YVWATSWGVSTRLIGAVIMAHSDDRG---LVLPPRIAPTQAVIIPIYTKKTVDQVADYAK 307 +V S+G + A+ A+ + G L P IAP QAV++P+ +++ + A+ Sbjct: 436 HVVEPSFGTDRNVYVALEYAYREVEGRVVLAFPRDIAPVQAVVLPLVEND--EKLVERAR 493 Query: 308 RVFGRLAEAGLSVEMDLDDQNSPGWKFAEWELRGVPIRVEVGPRDMEQEKAVLVRRDT 365 V+ L EAG +V D D S G ++A + GVP V + + +E L RDT Sbjct: 494 MVYETLVEAGFTVYYD--DSGSIGRRYARADEIGVPAAVTIDYQTLEDGTVTLRDRDT 549 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.135 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 454,222 Number of Sequences: 1700 Number of extensions: 18835 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 2 length of query: 477 length of database: 492,079 effective HSP length: 80 effective length of query: 397 effective length of database: 356,079 effective search space: 141363363 effective search space used: 141363363 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717743|ref|YP_003873275.1| hypothetical protein STHERM_c00260 [Spirochaeta thermophila DSM 6192] (227 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 207,923 Number of Sequences: 1700 Number of extensions: 8454 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 227 length of database: 492,079 effective HSP length: 74 effective length of query: 153 effective length of database: 366,279 effective search space: 56040687 effective search space used: 56040687 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717744|ref|YP_003873276.1| hypothetical protein STHERM_c00270 [Spirochaeta thermophila DSM 6192] (264 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.144 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 196,631 Number of Sequences: 1700 Number of extensions: 5978 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 264 length of database: 492,079 effective HSP length: 75 effective length of query: 189 effective length of database: 364,579 effective search space: 68905431 effective search space used: 68905431 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717745|ref|YP_003873277.1| phosphatidate cytidylyltransferase [Spirochaeta thermophila DSM 6192] (200 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 179,145 Number of Sequences: 1700 Number of extensions: 6417 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 200 length of database: 492,079 effective HSP length: 72 effective length of query: 128 effective length of database: 369,679 effective search space: 47318912 effective search space used: 47318912 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717746|ref|YP_003873278.1| 6-phosphofructokinase [Spirochaeta thermophila DSM 6192] (366 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 348,677 Number of Sequences: 1700 Number of extensions: 14489 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 366 length of database: 492,079 effective HSP length: 78 effective length of query: 288 effective length of database: 359,479 effective search space: 103529952 effective search space used: 103529952 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717747|ref|YP_003873279.1| GAF domain/HD domain-containing protein [Spirochaeta thermophila DSM 6192] (407 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 387,129 Number of Sequences: 1700 Number of extensions: 16014 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 407 length of database: 492,079 effective HSP length: 79 effective length of query: 328 effective length of database: 357,779 effective search space: 117351512 effective search space used: 117351512 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717748|ref|YP_003873280.1| Na+/glutamate symporter-like protein [Spirochaeta thermophila DSM 6192] (458 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.142 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 349,192 Number of Sequences: 1700 Number of extensions: 13033 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 458 length of database: 492,079 effective HSP length: 80 effective length of query: 378 effective length of database: 356,079 effective search space: 134597862 effective search space used: 134597862 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717749|ref|YP_003873281.1| hypothetical protein STHERM_c00320 [Spirochaeta thermophila DSM 6192] (393 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 348,642 Number of Sequences: 1700 Number of extensions: 13382 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 393 length of database: 492,079 effective HSP length: 79 effective length of query: 314 effective length of database: 357,779 effective search space: 112342606 effective search space used: 112342606 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717750|ref|YP_003873282.1| hypothetical protein STHERM_c00330 [Spirochaeta thermophila DSM 6192] (158 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 179,874 Number of Sequences: 1700 Number of extensions: 8324 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 158 length of database: 492,079 effective HSP length: 70 effective length of query: 88 effective length of database: 373,079 effective search space: 32830952 effective search space used: 32830952 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717751|ref|YP_003873283.1| hypothetical protein STHERM_c00340 [Spirochaeta thermophila DSM 6192] (464 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 451,162 Number of Sequences: 1700 Number of extensions: 20451 Number of successful extensions: 71 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71 Number of HSP's gapped (non-prelim): 0 length of query: 464 length of database: 492,079 effective HSP length: 80 effective length of query: 384 effective length of database: 356,079 effective search space: 136734336 effective search space used: 136734336 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717752|ref|YP_003873284.1| prolipoprotein diacylglyceryl transferase [Spirochaeta thermophila DSM 6192] (324 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.146 0.483 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 357,183 Number of Sequences: 1700 Number of extensions: 16609 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 324 length of database: 492,079 effective HSP length: 77 effective length of query: 247 effective length of database: 361,179 effective search space: 89211213 effective search space used: 89211213 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717753|ref|YP_003873285.1| polymerase most proteins contain PALM domain HD hydrolase domain and Zn-ribbon domain [Spirochaeta thermophila DSM 6192] (988 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,057,797 Number of Sequences: 1700 Number of extensions: 52136 Number of successful extensions: 221 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 221 Number of HSP's gapped (non-prelim): 0 length of query: 988 length of database: 492,079 effective HSP length: 86 effective length of query: 902 effective length of database: 345,879 effective search space: 311982858 effective search space used: 311982858 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717754|ref|YP_003873286.1| flagellar synthesis regulator FleN [Spirochaeta thermophila DSM 6192] (384 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430945|ref|NP_147065.2| MRP/NBP35 family protein [Aeropyru... 50 7e-08 >gi|118430945|ref|NP_147065.2| MRP/NBP35 family protein [Aeropyrum pernix K1] Length = 309 Score = 50.4 bits (119), Expect = 7e-08 Identities = 25/56 (44%), Positives = 35/56 (62%) Query: 6 IASGKGGVGKSLIATNLAIALAQAGKEVVLVDLDLGGSNLHLMLGIPAPRGIGSFL 61 + S KGGVGKS + +LA ALA G+ V + D D+ G ++H MLG+ G+ S L Sbjct: 50 VISTKGGVGKSFVTASLAAALAAEGRRVGVFDADISGPSVHKMLGLQTGMGMPSQL 105 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 346,150 Number of Sequences: 1700 Number of extensions: 14509 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 2 length of query: 384 length of database: 492,079 effective HSP length: 78 effective length of query: 306 effective length of database: 359,479 effective search space: 110000574 effective search space used: 110000574 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717755|ref|YP_003873287.1| hypothetical protein STHERM_c00380 [Spirochaeta thermophila DSM 6192] (140 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.144 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 107,079 Number of Sequences: 1700 Number of extensions: 3444 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 140 length of database: 492,079 effective HSP length: 68 effective length of query: 72 effective length of database: 376,479 effective search space: 27106488 effective search space used: 27106488 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717756|ref|YP_003873288.1| carboxy-terminal-processing protease precursor [Spirochaeta thermophila DSM 6192] (469 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.140 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 547,270 Number of Sequences: 1700 Number of extensions: 27791 Number of successful extensions: 108 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108 Number of HSP's gapped (non-prelim): 0 length of query: 469 length of database: 492,079 effective HSP length: 80 effective length of query: 389 effective length of database: 356,079 effective search space: 138514731 effective search space used: 138514731 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717757|ref|YP_003873289.1| automatic annotation [Spirochaeta thermophila DSM 6192] (131 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431490|ref|NP_147996.2| hypothetical protein APE_1520.1 [A... 92 6e-21 >gi|118431490|ref|NP_147996.2| hypothetical protein APE_1520.1 [Aeropyrum pernix K1] Length = 136 Score = 91.7 bits (226), Expect = 6e-21 Identities = 50/128 (39%), Positives = 78/128 (60%), Gaps = 3/128 (2%) Query: 5 SVRTGERVQVVLITREVQEIVARSGVEEGICVVYSPHTTAGITINEAADPSVIRDFLMET 64 +V+T R+QV+ +T +V+E ++ G G+ VVY PHTTA + +NEA +P ++ D + Sbjct: 9 TVKTERRLQVLDVTGKVEEWLSTVGGVNGLLVVYVPHTTAAVAVNEA-EPRLMEDIVEFI 67 Query: 65 GKIVPFQDGYAH--AEGNSAAHIKTSLVGPSVTIPVEGGTLALGTWQGIYFCEFDGPRTR 122 ++ + H + N+ AH+ +++G S IPV GG L+LGTWQ I F E DGPR R Sbjct: 68 RELTKPGGPWKHNLVDVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILFVEMDGPRER 127 Query: 123 KVFVQIIG 130 V + +G Sbjct: 128 TVNLLYLG 135 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 135,336 Number of Sequences: 1700 Number of extensions: 5621 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 1 length of query: 131 length of database: 492,079 effective HSP length: 68 effective length of query: 63 effective length of database: 376,479 effective search space: 23718177 effective search space used: 23718177 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717758|ref|YP_003873290.1| WecB/TagA/CpsF family glycosyl transferase [Spirochaeta thermophila DSM 6192] (258 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.145 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 272,857 Number of Sequences: 1700 Number of extensions: 12426 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 258 length of database: 492,079 effective HSP length: 75 effective length of query: 183 effective length of database: 364,579 effective search space: 66717957 effective search space used: 66717957 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717759|ref|YP_003873291.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (378 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 411,811 Number of Sequences: 1700 Number of extensions: 19646 Number of successful extensions: 96 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96 Number of HSP's gapped (non-prelim): 0 length of query: 378 length of database: 492,079 effective HSP length: 78 effective length of query: 300 effective length of database: 359,479 effective search space: 107843700 effective search space used: 107843700 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717760|ref|YP_003873292.1| hypothetical protein STHERM_c00430 [Spirochaeta thermophila DSM 6192] (153 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.142 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 171,528 Number of Sequences: 1700 Number of extensions: 8311 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 153 length of database: 492,079 effective HSP length: 70 effective length of query: 83 effective length of database: 373,079 effective search space: 30965557 effective search space used: 30965557 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717761|ref|YP_003873293.1| hypothetical protein STHERM_c00440 [Spirochaeta thermophila DSM 6192] (251 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 230,323 Number of Sequences: 1700 Number of extensions: 9461 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 251 length of database: 492,079 effective HSP length: 75 effective length of query: 176 effective length of database: 364,579 effective search space: 64165904 effective search space used: 64165904 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717762|ref|YP_003873294.1| anti-anti-sigma factor [Spirochaeta thermophila DSM 6192] (183 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.143 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 169,821 Number of Sequences: 1700 Number of extensions: 6734 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 183 length of database: 492,079 effective HSP length: 72 effective length of query: 111 effective length of database: 369,679 effective search space: 41034369 effective search space used: 41034369 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717763|ref|YP_003873295.1| phage shock protein A-like protein [Spirochaeta thermophila DSM 6192] (231 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.130 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 153,180 Number of Sequences: 1700 Number of extensions: 4453 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 231 length of database: 492,079 effective HSP length: 74 effective length of query: 157 effective length of database: 366,279 effective search space: 57505803 effective search space used: 57505803 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717764|ref|YP_003873296.1| hypothetical protein STHERM_c00470 [Spirochaeta thermophila DSM 6192] (161 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 181,096 Number of Sequences: 1700 Number of extensions: 8217 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 0 length of query: 161 length of database: 492,079 effective HSP length: 70 effective length of query: 91 effective length of database: 373,079 effective search space: 33950189 effective search space used: 33950189 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717765|ref|YP_003873297.1| hypothetical protein STHERM_c00480 [Spirochaeta thermophila DSM 6192] (329 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.142 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 335,595 Number of Sequences: 1700 Number of extensions: 15328 Number of successful extensions: 65 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65 Number of HSP's gapped (non-prelim): 0 length of query: 329 length of database: 492,079 effective HSP length: 77 effective length of query: 252 effective length of database: 361,179 effective search space: 91017108 effective search space used: 91017108 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717766|ref|YP_003873298.1| hypothetical protein STHERM_c00490 [Spirochaeta thermophila DSM 6192] (560 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 496,695 Number of Sequences: 1700 Number of extensions: 21370 Number of successful extensions: 74 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74 Number of HSP's gapped (non-prelim): 0 length of query: 560 length of database: 492,079 effective HSP length: 82 effective length of query: 478 effective length of database: 352,679 effective search space: 168580562 effective search space used: 168580562 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717767|ref|YP_003873299.1| protein CapI [Spirochaeta thermophila DSM 6192] (350 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601230|ref|NP_147763.1| dTDP-glucose 4,6-dehydratase [Aerop... 98 3e-22 >gi|14601230|ref|NP_147763.1| dTDP-glucose 4,6-dehydratase [Aeropyrum pernix K1] Length = 330 Score = 97.8 bits (242), Expect = 3e-22 Identities = 94/346 (27%), Positives = 146/346 (42%), Gaps = 42/346 (12%) Query: 1 MRFLVTGSAGFVGFHLVDFLLRKGHEVVGIDNLSPYYDVGLKKARLAEHGIVVGERGEGM 60 MR LVTG AGF+G V +++ V + YD RL V+ G Sbjct: 1 MRVLVTGGAGFIGSSFVRYIVNTTDWEVLV------YDKLTYAGRLENLHDVIDRIG--- 51 Query: 61 RSRIWEGYIFYFEDVRDRVFLETLLRRHGVERVIHLAAQAGVRYSLTHPEVYLQSNIEGF 120 F D+ D +L + V++ AA+ V S+ P ++++NI G Sbjct: 52 ---------FMRGDIADEEQFGRVLTEFEPDVVVNFAAETHVDRSINEPAPFMRTNIIGV 102 Query: 121 WAVLEASR-RCGVERLVYASTSSVYG--LNEKVPFSERDGVDHPVSLYAATKRSNELFAH 177 + +LEA R R L++ ST VYG N +E D + +P S Y+A+K S +L Sbjct: 103 FTILEAIRKRIDQIVLLHVSTDEVYGDLWNTGKEATESDPL-NPSSPYSASKASGDLLIK 161 Query: 178 VYSHIYGLPTIGLRFFTVYGPWGRPDMAYFSFTERILKGEPIEVFNHGHMERDFTYVEDV 237 Y YGL +R YGP+ + RIL G+P ++ G RD+ YVED Sbjct: 162 AYGRTYGLKYRIVRPCNNYGPYQHVEKLIPRTIIRILHGKPPVIYGDGSQIRDWLYVEDT 221 Query: 238 VEGVARVAEHPLXXXXXXXXXXXXXXXSSAPFWVYNIGHGSPVGLMDFIRAIEEALGR-E 296 + V E + +YN+ G + D + I E++G+ Sbjct: 222 ARAIHVVLEKGVDGE------------------IYNVCGGMASTVKDIVVNILESMGKPR 263 Query: 297 ARIVYREMQPGDVVATHASTKSLEEAVGYRPSTPLSEGIRRFVAWY 342 +VY + +PG+ +A +G+ P L EG++ V WY Sbjct: 264 DYLVYGKSRPGE-DRRYAMKCDKIRNLGWAPHVTLKEGLKITVKWY 308 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 389,684 Number of Sequences: 1700 Number of extensions: 18573 Number of successful extensions: 76 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 72 Number of HSP's gapped (non-prelim): 1 length of query: 350 length of database: 492,079 effective HSP length: 78 effective length of query: 272 effective length of database: 359,479 effective search space: 97778288 effective search space used: 97778288 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717768|ref|YP_003873300.1| hypothetical protein STHERM_c00510 [Spirochaeta thermophila DSM 6192] (424 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600809|ref|NP_147332.1| 3-phosphoshikimate 1-carboxyvinyltr... 42 4e-05 >gi|14600809|ref|NP_147332.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aeropyrum pernix K1] Length = 427 Score = 41.6 bits (96), Expect = 4e-05 Identities = 77/324 (23%), Positives = 114/324 (35%), Gaps = 37/324 (11%) Query: 114 GGDVIGRRRLDTHFLALSALGARVEIDG----VFRLTAHRLVGDEIFLDEASVTATENAI 169 G + + RR + AL ++GARV G V R E+ +S AT I Sbjct: 116 GDESLNRRPVHPLSEALRSMGARVCDTGGNPPVKVSGPLRRASVEVDAAISSQFATSLLI 175 Query: 170 MAAVLAEGTTVIRNAASEPHVQDLCHMLNQMGAQISGIGSNVLTIEGVERLSGTTFAIGS 229 + L E +S +V L+ G ++ G + + G + A+ Sbjct: 176 AGSRLGEFELSAARLSSRGYVDITLESLSMFGVRVEREGYRLFRLRGTPK--PVDAAVPG 233 Query: 230 DYMEVGSFIGLAAVTRGDVVIEN---ADPQHLRMTKLAFGKLGIYWEQEGRTIHVPAGQS 286 DY SF+ A G V +E DPQ R +G EG + V + Sbjct: 234 DYSSA-SFMLAAGAIAGRVEVEGLRPVDPQPDRRIVELLRSMGARVRVEGGVVAVESTGP 292 Query: 287 LKVVPDLGGAIPKIDDAPWPGFPADLTSIMTVVATQAEGTILIHE----KMFESRMFFVD 342 L+ V D G P DL + V+A A G + K ES D Sbjct: 293 LEPV-----------DVDLDGSP-DLAPVAAVLAAYARGVSRLRGLERLKYKES-----D 335 Query: 343 KLIEMGARIILCDPHRAVVSGPSRLRGSELTSP------DVRAGMAMVIAALCAEGESLI 396 +L + + V G +RG + D R MAM +A L A + Sbjct: 336 RLSAIAWNLARLGVEARVRGGILEIRGGGVEGGVARSWGDHRIAMAMAVAGLGARRPVAV 395 Query: 397 HNVYQIERGYEDLVERLQNLGARI 420 ++ Y +E L LGAR+ Sbjct: 396 EGFSRVPDSYPGFLEDLARLGARV 419 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 417,078 Number of Sequences: 1700 Number of extensions: 18692 Number of successful extensions: 66 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 3 length of query: 424 length of database: 492,079 effective HSP length: 79 effective length of query: 345 effective length of database: 357,779 effective search space: 123433755 effective search space used: 123433755 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717769|ref|YP_003873301.1| hypothetical protein STHERM_c00520 [Spirochaeta thermophila DSM 6192] (347 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.142 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 373,138 Number of Sequences: 1700 Number of extensions: 17411 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 347 length of database: 492,079 effective HSP length: 78 effective length of query: 269 effective length of database: 359,479 effective search space: 96699851 effective search space used: 96699851 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717770|ref|YP_003873302.1| aspartate kinase [Spirochaeta thermophila DSM 6192] (460 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431339|ref|NP_147738.2| aspartate kinase [Aeropyrum pernix... 159 1e-40 >gi|118431339|ref|NP_147738.2| aspartate kinase [Aeropyrum pernix K1] Length = 454 Score = 159 bits (402), Expect = 1e-40 Identities = 144/451 (31%), Positives = 210/451 (46%), Gaps = 35/451 (7%) Query: 3 VMKFGGSSVADGPKIAHVVELVRKARER--EPVAVVLSAMKGVTDLLLSMARKAESGDPS 60 V+KFGGS + P LV E EPV VV+SA+KGVTD LLS + + G Sbjct: 10 VVKFGGSVLNGSPGFLAAGRLVLGLLESGLEPV-VVVSAVKGVTDALLSSFERRDPGVGG 68 Query: 61 YREDLSSLTARQKETLSSLMGDGTQAGAAWDAVSALLEDLSSILHGIELVRECSRRSLDL 120 A K LS G + D VS ++S +L E++ + + R DL Sbjct: 69 ---------AVGKTYLSIARELGLPPESVRD-VSLASAEVSKLLWAAEVLGQWTPRVRDL 118 Query: 121 VASFGERLNCTLVTRYLLSLGERAEYVDAREV-VLTDDSFGSAVVQFEETYGRIRERLAG 179 V S+GERL+ L+ L LG A ++ E ++TD FG A + T G IRERL Sbjct: 119 VVSYGERLSAALMAGLLRRLGVEARWLGGGEAGIVTDGEFGDATPLYGYTEGVIRERLEP 178 Query: 180 ----DAIYVVTGFIGATREGVTTTLGRNGSDYSXXXXXXXXXXXXXXXWTDVDGVMSADP 235 + VV GF GATREG TT LGR GSD + +TDV G++S DP Sbjct: 179 MLEEGVVPVVAGFTGATREGDTTLLGRGGSDLTATLLASALGAGRVVLYTDVPGILSGDP 238 Query: 236 RVVPEAFVLEEVSFQEAMELSYFGAKVIHPYTMIPAVERDIPIVIKNTMNPGFPGTRIVK 295 RVV E + +S++EA E++ G + HP T P + + + + + G TRI Sbjct: 239 RVVGEPRRVGYMSYEEAWEVARLGLRKFHPRTFEPLIAGGLGVEVVVSDLRG-RSTRI-- 295 Query: 296 HPKPHPWPITGIASIPGVALINIEGSGMMGVPGIAARVFSALAEAKVNIIMISQASSEHS 355 P P+ ++ GVA + + G M G G +R+ LA VNI+ I Q SE + Sbjct: 296 GPGRGGPPLKVVSLSRGVARLVVRGPSMAGKRGFLSRLAGLLAGRGVNILAIRQPPSETA 355 Query: 356 ICVVCRKEEVDRALDALERSLEPERRARIISDFECIRDLEIIAIVG--------ENMRGT 407 I +V + ++ A++ L R E R ++++IVG E + Sbjct: 356 IELVVDERDLPAAVEEL-----GARSGAAGVRLEVERGFDVVSIVGWGAVEALPEALSAA 410 Query: 408 PGLAGRLFQAVGERGINVHAIAQGSSERNLS 438 GRL + GE ++ +A+G + L+ Sbjct: 411 EKTGGRLL-STGELSPSISILARGRTSPELA 440 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 444,439 Number of Sequences: 1700 Number of extensions: 19485 Number of successful extensions: 87 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81 Number of HSP's gapped (non-prelim): 2 length of query: 460 length of database: 492,079 effective HSP length: 80 effective length of query: 380 effective length of database: 356,079 effective search space: 135310020 effective search space used: 135310020 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717771|ref|YP_003873303.1| threonine synthase [Spirochaeta thermophila DSM 6192] (435 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601969|ref|NP_148514.1| threonine synthase [Aeropyrum perni... 72 3e-14 >gi|14601969|ref|NP_148514.1| threonine synthase [Aeropyrum pernix K1] Length = 393 Score = 71.6 bits (174), Expect = 3e-14 Identities = 89/334 (26%), Positives = 142/334 (42%), Gaps = 49/334 (14%) Query: 99 FHGPSCAFKDFGASFLASCMEVFLSRREGRAVILTATSGDTGSAVAQAFHGRRHIDVVIL 158 F P+ +FKD G + S F R +++ A++G+T +++A A+ R ++ VIL Sbjct: 81 FLNPTGSFKDRGMTVGVSIASSFSYR-----LVVAASTGNTAASMA-AYARRAGLNPVIL 134 Query: 159 YPSGRVSPLQEKQLTTLGGNVHALEVAGSFDDCQRMVKEAFLDQELSERCPLTSANSINL 218 P G ++ + Q+ LG V LEV GSFDD + A +E+ S NSIN Sbjct: 135 IPKGGIASGKLSQIAALGAWV--LEVEGSFDDALDAARAA------AEKGLAYSLNSINP 186 Query: 219 GRLVPQSFYYVWAYAQLKARGERPFFCVPSGNFGNLTAGVYAWWWGMPVRGFLAATNVND 278 RL Q A+ L+ VP GN GN++ A W G G L ++ Sbjct: 187 YRLEGQK---TIAFEILEDVDRVDHVVVPVGNAGNIS----AIWKGFKEAGLLGLPSMRP 239 Query: 279 VVPEYLSTGV-------FTPRSSVR------TLSNAMDVGNPSNFERLLALFEGDHRRMA 325 + + G SV T+++A+ +GNP N + LA + Sbjct: 240 RMVGVQAEGASPLYRAWVEKMDSVERVRNPSTIASAIRIGNPVNAAKALAAVRESDGLII 299 Query: 326 AVIRGERVTDEETLDTIARYWRERGVFLDPHTAVGVKASERLLERERGV----APVVTLA 381 + V+D E L A G+ ++P +A + +L R +G+ + VV + Sbjct: 300 S------VSDAEILKAAATLAENEGMLVEPASAASLAGLIKL--RNQGIIASGSSVVLIL 351 Query: 382 TAH---PGKFLEVVEEALGIRPPLPPQLEEVLAK 412 T H + LE + + G+R EE L K Sbjct: 352 TGHGLKDPRALEFIASSAGVRRAYASTAEEALLK 385 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 455,570 Number of Sequences: 1700 Number of extensions: 21447 Number of successful extensions: 87 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 86 Number of HSP's gapped (non-prelim): 1 length of query: 435 length of database: 492,079 effective HSP length: 80 effective length of query: 355 effective length of database: 356,079 effective search space: 126408045 effective search space used: 126408045 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717772|ref|YP_003873304.1| hypothetical protein STHERM_c00550 [Spirochaeta thermophila DSM 6192] (360 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 292,059 Number of Sequences: 1700 Number of extensions: 10683 Number of successful extensions: 27 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 0 length of query: 360 length of database: 492,079 effective HSP length: 78 effective length of query: 282 effective length of database: 359,479 effective search space: 101373078 effective search space used: 101373078 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717773|ref|YP_003873305.1| hypothetical protein STHERM_c00560 [Spirochaeta thermophila DSM 6192] (594 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 608,743 Number of Sequences: 1700 Number of extensions: 28884 Number of successful extensions: 71 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71 Number of HSP's gapped (non-prelim): 0 length of query: 594 length of database: 492,079 effective HSP length: 82 effective length of query: 512 effective length of database: 352,679 effective search space: 180571648 effective search space used: 180571648 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717774|ref|YP_003873306.1| hypothetical protein STHERM_c00570 [Spirochaeta thermophila DSM 6192] (146 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.489 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 146,422 Number of Sequences: 1700 Number of extensions: 5778 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 146 length of database: 492,079 effective HSP length: 69 effective length of query: 77 effective length of database: 374,779 effective search space: 28857983 effective search space used: 28857983 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717775|ref|YP_003873307.1| hypothetical protein STHERM_c00580 [Spirochaeta thermophila DSM 6192] (273 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.142 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 279,329 Number of Sequences: 1700 Number of extensions: 12298 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 273 length of database: 492,079 effective HSP length: 75 effective length of query: 198 effective length of database: 364,579 effective search space: 72186642 effective search space used: 72186642 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717776|ref|YP_003873308.1| hypothetical protein STHERM_c00590 [Spirochaeta thermophila DSM 6192] (221 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.143 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 263,854 Number of Sequences: 1700 Number of extensions: 13252 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 0 length of query: 221 length of database: 492,079 effective HSP length: 73 effective length of query: 148 effective length of database: 367,979 effective search space: 54460892 effective search space used: 54460892 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717777|ref|YP_003873309.1| hypothetical protein STHERM_c00600 [Spirochaeta thermophila DSM 6192] (103 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.141 0.472 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,888 Number of Sequences: 1700 Number of extensions: 1673 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 103 length of database: 492,079 effective HSP length: 64 effective length of query: 39 effective length of database: 383,279 effective search space: 14947881 effective search space used: 14947881 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717778|ref|YP_003873310.1| hypothetical protein STHERM_c00610 [Spirochaeta thermophila DSM 6192] (962 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.139 0.471 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 833,185 Number of Sequences: 1700 Number of extensions: 34384 Number of successful extensions: 108 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108 Number of HSP's gapped (non-prelim): 0 length of query: 962 length of database: 492,079 effective HSP length: 86 effective length of query: 876 effective length of database: 345,879 effective search space: 302990004 effective search space used: 302990004 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717779|ref|YP_003873311.1| YD repeat-containing protein [Spirochaeta thermophila DSM 6192] (1701 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.138 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,999,486 Number of Sequences: 1700 Number of extensions: 106506 Number of successful extensions: 223 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 223 Number of HSP's gapped (non-prelim): 0 length of query: 1701 length of database: 492,079 effective HSP length: 90 effective length of query: 1611 effective length of database: 339,079 effective search space: 546256269 effective search space used: 546256269 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 98 (42.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717780|ref|YP_003873312.1| hypothetical protein STHERM_c00630 [Spirochaeta thermophila DSM 6192] (452 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.137 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 568,945 Number of Sequences: 1700 Number of extensions: 29418 Number of successful extensions: 65 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65 Number of HSP's gapped (non-prelim): 0 length of query: 452 length of database: 492,079 effective HSP length: 80 effective length of query: 372 effective length of database: 356,079 effective search space: 132461388 effective search space used: 132461388 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717781|ref|YP_003873313.1| hypothetical protein STHERM_c00640 [Spirochaeta thermophila DSM 6192] (566 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.141 0.471 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 519,295 Number of Sequences: 1700 Number of extensions: 23844 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 0 length of query: 566 length of database: 492,079 effective HSP length: 82 effective length of query: 484 effective length of database: 352,679 effective search space: 170696636 effective search space used: 170696636 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717782|ref|YP_003873314.1| hypothetical protein STHERM_c00650 [Spirochaeta thermophila DSM 6192] (53 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.137 0.463 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,231 Number of Sequences: 1700 Number of extensions: 2593 Number of successful extensions: 5 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 53 length of database: 492,079 effective HSP length: 26 effective length of query: 27 effective length of database: 447,879 effective search space: 12092733 effective search space used: 12092733 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717783|ref|YP_003873315.1| hypothetical protein STHERM_c00660 [Spirochaeta thermophila DSM 6192] (141 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 163,402 Number of Sequences: 1700 Number of extensions: 7207 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 141 length of database: 492,079 effective HSP length: 69 effective length of query: 72 effective length of database: 374,779 effective search space: 26984088 effective search space used: 26984088 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717784|ref|YP_003873316.1| hypothetical protein STHERM_c00670 [Spirochaeta thermophila DSM 6192] (160 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.129 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 119,816 Number of Sequences: 1700 Number of extensions: 4207 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 160 length of database: 492,079 effective HSP length: 70 effective length of query: 90 effective length of database: 373,079 effective search space: 33577110 effective search space used: 33577110 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717785|ref|YP_003873317.1| hypothetical protein STHERM_c00680 [Spirochaeta thermophila DSM 6192] (168 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 127,651 Number of Sequences: 1700 Number of extensions: 4608 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 168 length of database: 492,079 effective HSP length: 71 effective length of query: 97 effective length of database: 371,379 effective search space: 36023763 effective search space used: 36023763 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717786|ref|YP_003873318.1| hypothetical protein STHERM_c00690 [Spirochaeta thermophila DSM 6192] (158 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 192,774 Number of Sequences: 1700 Number of extensions: 9311 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 158 length of database: 492,079 effective HSP length: 70 effective length of query: 88 effective length of database: 373,079 effective search space: 32830952 effective search space used: 32830952 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717787|ref|YP_003873319.1| hypothetical protein STHERM_c00700 [Spirochaeta thermophila DSM 6192] (158 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 151,198 Number of Sequences: 1700 Number of extensions: 5970 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 158 length of database: 492,079 effective HSP length: 70 effective length of query: 88 effective length of database: 373,079 effective search space: 32830952 effective search space used: 32830952 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717788|ref|YP_003873320.1| hypothetical protein STHERM_c00710 [Spirochaeta thermophila DSM 6192] (226 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.145 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 208,327 Number of Sequences: 1700 Number of extensions: 7585 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 226 length of database: 492,079 effective HSP length: 74 effective length of query: 152 effective length of database: 366,279 effective search space: 55674408 effective search space used: 55674408 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717789|ref|YP_003873321.1| hypothetical protein STHERM_c00720 [Spirochaeta thermophila DSM 6192] (156 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.146 0.488 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 165,023 Number of Sequences: 1700 Number of extensions: 6516 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 0 length of query: 156 length of database: 492,079 effective HSP length: 70 effective length of query: 86 effective length of database: 373,079 effective search space: 32084794 effective search space used: 32084794 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717790|ref|YP_003873322.1| hypothetical protein STHERM_c00730 [Spirochaeta thermophila DSM 6192] (381 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601748|ref|NP_148289.1| oxidoreductase [Aeropyrum pernix K1] 72 2e-14 gi|14601541|ref|NP_148081.1| oxidoreductase [Aeropyrum pernix K1] 59 3e-10 gi|118431478|ref|NP_147979.2| hypothetical protein APE_1495.1 [A... 44 7e-06 >gi|14601748|ref|NP_148289.1| oxidoreductase [Aeropyrum pernix K1] Length = 272 Score = 72.0 bits (175), Expect = 2e-14 Identities = 63/251 (25%), Positives = 117/251 (46%), Gaps = 32/251 (12%) Query: 3 YRTMGRTGVEVSALGFGCMRFPTKGGDGSRIDETQAERMLLYAIEHGVNYLDTAWPYHGG 62 ++ +G+T +SA+G G D + A +YAIE G+N++DTA Y G Sbjct: 11 FKPIGKTKERLSAVGLGTWAIR---------DYSSALESYVYAIERGINHIDTAEMYGAG 61 Query: 63 RSEPFVGNVLERHGLRDRVFLATKMPMWEVKTGADLDRIFDEQRRRLKTDYVDFYLLHSL 122 +E FVG VL G RDRV++ TK+ + + + + R+ YVD L+H Sbjct: 62 EAERFVGKVLRSVG-RDRVYVVTKLYPFRFRDPDEAVKAARASAERMGVSYVDIILIHWP 120 Query: 123 NKENWRRVEASGALEWIQKKKEEGAIRFIGFS------FHDEISEFKRYVDALGEGWDFC 176 + + ++ ++ E G R+IG S + ++ K++ + Sbjct: 121 DPQ----TPIKDQVKSLEAIAEAGLARYIGVSNFSKEQLEEALTATKKHEIVVN------ 170 Query: 177 QIQYNYMNEYEQAGTEGLNYAVERGLGVVVMEPLLGGYLAGRIPRLEPVWAQSGRPWSPV 236 Q++Y+ + ++ E + AVE+ + + PL G++A + L + Q G+ +PV Sbjct: 171 QVKYSVL---DRRAEELIPLAVEKSILLEAYSPLERGHVA-EVRLLAKIGRQYGK--TPV 224 Query: 237 EWALRWLWNNP 247 + AL ++ + P Sbjct: 225 QVALNFIVSRP 235 >gi|14601541|ref|NP_148081.1| oxidoreductase [Aeropyrum pernix K1] Length = 335 Score = 58.5 bits (140), Expect = 3e-10 Identities = 63/235 (26%), Positives = 96/235 (40%), Gaps = 25/235 (10%) Query: 6 MGRTGVEVSALGFGCMRFPTKGGDGSRIDETQAERMLLYAIEHGVNYLDTAWPYHGGRSE 65 +GRTG VS +G G +F + G + R L A+E G+N LDTA Y G SE Sbjct: 7 LGRTGPRVSRVGLGLWQFGSPMWGGKALSADVLARGLSIAVEEGINLLDTAEVYGMGSSE 66 Query: 66 PFVGNVLERHGLRDRVFLATKMPMWEVKTGADLDRIFDEQRRRLKTDYVDFYLLHSLNKE 125 +G L+R R+ + +K+ + T D+ + RL + +LH Sbjct: 67 RMLGEALKRLNAREDFVIVSKVAGFR-STAGDIVKGARGIAGRLSS--APDVILHHWPPP 123 Query: 126 NWRRVEASGALEWIQKKKEEGAIRFIGFSFHDEISEFKRYVDALGEGWDFC--------Q 177 + R+ + +++ EG + GFS + E D LG+ Q Sbjct: 124 VYSRL--CSVVRGLEQAVNEGLASYYGFSNYGE--------DLLGDALSCTRRLEPVADQ 173 Query: 178 IQYNYMNEYEQAGTEGLNYAVERGLGVVVMEPLLGGYLAGRIPRLEPVWAQSGRP 232 I YN Y + + G+ + PL G LAG + EP AQ+G P Sbjct: 174 ILYNL--AYRTPEQRLIPLLHQHGMTPIAWSPLAKGALAGF--KGEPTRAQAGDP 224 >gi|118431478|ref|NP_147979.2| hypothetical protein APE_1495.1 [Aeropyrum pernix K1] Length = 326 Score = 43.9 bits (102), Expect = 7e-06 Identities = 59/216 (27%), Positives = 93/216 (43%), Gaps = 20/216 (9%) Query: 9 TGVEVSALGFGCMRFPTKGGDGSRIDETQAERMLLYAIEHGVNYLDTAWPYHGGRSEPFV 68 T + S L +G + G GS ++ +A +L +A GV + DTA Y G E + Sbjct: 5 TKMPASKLAYGV--YSLTGMYGS-VEPGEALAILRFARSLGVEHFDTADVYGNGLGERLL 61 Query: 69 GNVLERHGLRDRVFLATKMPMWEVKTGADLDRIFDEQ------RR---RLKTDYVDFYLL 119 G G R VF+ATK+ ++ +G R +D + RR RL + VD + Sbjct: 62 GEAFP--GGRG-VFVATKVG-YDFYSGGRPVRRYDREYLEKALRRSLERLGVESVDLLYI 117 Query: 120 HSLNKENWRRVEASGALEWIQKKKEEGAIRFIGFSFHDEISEFKRYVDALGEGWDFCQIQ 179 H+ E R E L W ++ EG I G + E + ++A+ + +Q Sbjct: 118 HNPPLEVLRGGEIYRFLSWARR---EGLIGMGGIALGPETDVAEEALEAVSHS-EVEAVQ 173 Query: 180 YNYMNEYEQAGTEGLNYAVERGLGVVVMEPLLGGYL 215 + Y ++ G +A ERG+ V P GG L Sbjct: 174 FVYNMLEQEPGYTIAAWARERGVAAVARVPHAGGVL 209 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 414,074 Number of Sequences: 1700 Number of extensions: 19090 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 3 length of query: 381 length of database: 492,079 effective HSP length: 78 effective length of query: 303 effective length of database: 359,479 effective search space: 108922137 effective search space used: 108922137 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717791|ref|YP_003873323.1| response regulator receiver protein [Spirochaeta thermophila DSM 6192] (127 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 114,600 Number of Sequences: 1700 Number of extensions: 4613 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 127 length of database: 492,079 effective HSP length: 67 effective length of query: 60 effective length of database: 378,179 effective search space: 22690740 effective search space used: 22690740 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717792|ref|YP_003873324.1| hypothetical protein STHERM_c00750 [Spirochaeta thermophila DSM 6192] (525 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 539,611 Number of Sequences: 1700 Number of extensions: 24036 Number of successful extensions: 91 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91 Number of HSP's gapped (non-prelim): 0 length of query: 525 length of database: 492,079 effective HSP length: 81 effective length of query: 444 effective length of database: 354,379 effective search space: 157344276 effective search space used: 157344276 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717793|ref|YP_003873325.1| hypothetical protein STHERM_c00760 [Spirochaeta thermophila DSM 6192] (238 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.145 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 238,068 Number of Sequences: 1700 Number of extensions: 9894 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 238 length of database: 492,079 effective HSP length: 74 effective length of query: 164 effective length of database: 366,279 effective search space: 60069756 effective search space used: 60069756 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717794|ref|YP_003873326.1| hypothetical protein STHERM_c00770 [Spirochaeta thermophila DSM 6192] (298 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.143 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 281,873 Number of Sequences: 1700 Number of extensions: 11993 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 0 length of query: 298 length of database: 492,079 effective HSP length: 76 effective length of query: 222 effective length of database: 362,879 effective search space: 80559138 effective search space used: 80559138 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717795|ref|YP_003873327.1| hypothetical protein STHERM_c00780 [Spirochaeta thermophila DSM 6192] (587 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 620,456 Number of Sequences: 1700 Number of extensions: 28368 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 0 length of query: 587 length of database: 492,079 effective HSP length: 82 effective length of query: 505 effective length of database: 352,679 effective search space: 178102895 effective search space used: 178102895 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717796|ref|YP_003873328.1| hypothetical protein STHERM_c00790 [Spirochaeta thermophila DSM 6192] (376 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.136 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 406,200 Number of Sequences: 1700 Number of extensions: 18591 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 0 length of query: 376 length of database: 492,079 effective HSP length: 78 effective length of query: 298 effective length of database: 359,479 effective search space: 107124742 effective search space used: 107124742 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717797|ref|YP_003873329.1| hypothetical protein STHERM_c00800 [Spirochaeta thermophila DSM 6192] (543 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 566,899 Number of Sequences: 1700 Number of extensions: 26604 Number of successful extensions: 103 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103 Number of HSP's gapped (non-prelim): 0 length of query: 543 length of database: 492,079 effective HSP length: 81 effective length of query: 462 effective length of database: 354,379 effective search space: 163723098 effective search space used: 163723098 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717798|ref|YP_003873330.1| hypothetical protein STHERM_c00810 [Spirochaeta thermophila DSM 6192] (381 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 359,503 Number of Sequences: 1700 Number of extensions: 15448 Number of successful extensions: 66 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66 Number of HSP's gapped (non-prelim): 0 length of query: 381 length of database: 492,079 effective HSP length: 78 effective length of query: 303 effective length of database: 359,479 effective search space: 108922137 effective search space used: 108922137 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717799|ref|YP_003873331.1| hypothetical protein STHERM_c00820 [Spirochaeta thermophila DSM 6192] (870 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 991,105 Number of Sequences: 1700 Number of extensions: 50786 Number of successful extensions: 184 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 184 Number of HSP's gapped (non-prelim): 0 length of query: 870 length of database: 492,079 effective HSP length: 85 effective length of query: 785 effective length of database: 347,579 effective search space: 272849515 effective search space used: 272849515 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717800|ref|YP_003873332.1| hypothetical protein STHERM_c00830 [Spirochaeta thermophila DSM 6192] (1152 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,148,468 Number of Sequences: 1700 Number of extensions: 52815 Number of successful extensions: 156 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 156 Number of HSP's gapped (non-prelim): 0 length of query: 1152 length of database: 492,079 effective HSP length: 87 effective length of query: 1065 effective length of database: 344,179 effective search space: 366550635 effective search space used: 366550635 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717801|ref|YP_003873333.1| 3-oxoacyl-ACP synthase [Spirochaeta thermophila DSM 6192] (329 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431628|ref|NP_148228.2| hypothetical protein APE_1873.1 [A... 58 4e-10 >gi|118431628|ref|NP_148228.2| hypothetical protein APE_1873.1 [Aeropyrum pernix K1] Length = 361 Score = 57.8 bits (138), Expect = 4e-10 Identities = 72/315 (22%), Positives = 123/315 (39%), Gaps = 31/315 (9%) Query: 11 GSYAPPRRLTNEELATMVDTSD-EWIHSHTGIRARHIAADHEAASDLGTIAGSRALDAAG 69 G+Y P R+ E+A + D +W + + + E ++ +G A A+ A Sbjct: 21 GAYVPVYRIPTREIARVWGWPDHQW--KALDVYEKAVGGVDEDSTTMGVEAARNAIARAR 78 Query: 70 ISPEEVDMVLVATSTPDYLSYPATACIIQDNLSCTRAA-AMDITAACTGFVYGLETAACY 128 + P + V + + Y P+ A II + L T A D+ AC G+ + Sbjct: 79 VDPASIGAVFFGSESKPYAVKPS-ATIIAEALGITPVTMASDLEFACRAASEGMRASIGL 137 Query: 129 IKAGRARYVLVIGTEVNSRILNWNDRNTCVLFGDAAGAV--LVGPSPDSTSSIEDSVLRS 186 + +G Y LV+G++ + F ++GA ++GPS + + E S Sbjct: 138 VASGVVGYTLVVGSDTAQA-----SPGDVLEFSASSGAAAFVIGPSKGAAAVFESSFTYV 192 Query: 187 LGNDALALLRPKGGSRSPLTFTPEEEKDFYVQMNGKKVYLFAVSAMGKTIEKLLRRNDLT 246 R L P + F G+ Y + + ++ L + L+ Sbjct: 193 TDTPDFW--------RRGLKPYPSHGEGF----TGEPAYFHHIES---AVKGLFEKTGLS 237 Query: 247 IDDIAYIVPHQANVRIIQACSQRLGIPMEKFYLNLEE--YANTSAASIPLALDEMNRKGL 304 D Y + HQ N + +++LG ME+ L NT AS L L ++ + Sbjct: 238 PGDFDYAIFHQPNGKFPVKVAKKLGFTMEQVKPGLVTPFIGNTYNASALLGLVKV--LDV 295 Query: 305 LTRGDRILTVGFGAG 319 GDRIL FG+G Sbjct: 296 AKPGDRILVAPFGSG 310 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 318,215 Number of Sequences: 1700 Number of extensions: 13215 Number of successful extensions: 48 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 1 length of query: 329 length of database: 492,079 effective HSP length: 77 effective length of query: 252 effective length of database: 361,179 effective search space: 91017108 effective search space used: 91017108 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717802|ref|YP_003873334.1| inner membrane lipoprotein [Spirochaeta thermophila DSM 6192] (1839 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,025,508 Number of Sequences: 1700 Number of extensions: 100603 Number of successful extensions: 263 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 263 Number of HSP's gapped (non-prelim): 0 length of query: 1839 length of database: 492,079 effective HSP length: 90 effective length of query: 1749 effective length of database: 339,079 effective search space: 593049171 effective search space used: 593049171 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 99 (42.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717803|ref|YP_003873335.1| hypothetical protein STHERM_c00860 [Spirochaeta thermophila DSM 6192] (825 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 895,077 Number of Sequences: 1700 Number of extensions: 42446 Number of successful extensions: 113 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113 Number of HSP's gapped (non-prelim): 0 length of query: 825 length of database: 492,079 effective HSP length: 85 effective length of query: 740 effective length of database: 347,579 effective search space: 257208460 effective search space used: 257208460 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717804|ref|YP_003873336.1| glycosylase [Spirochaeta thermophila DSM 6192] (356 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431005|ref|NP_147160.2| hypothetical protein APE_0339.1 [A... 54 6e-09 >gi|118431005|ref|NP_147160.2| hypothetical protein APE_0339.1 [Aeropyrum pernix K1] Length = 363 Score = 53.9 bits (128), Expect = 6e-09 Identities = 47/135 (34%), Positives = 62/135 (45%), Gaps = 23/135 (17%) Query: 227 MGPRGVESLWQHTKIGAGPAPIETSEGW------------LLLYHGVLTSCNGFVYSMGA 274 + P +S+W+ PAP E GW L+L HGV T VY + A Sbjct: 229 ISPLAPKSVWRIMD----PAPFEEKIGWATPVNGYKGGSLLVLLHGVDTEQQ--VYRVLA 282 Query: 275 ALLDLD-EPWKVRYRSAHYLLSPRAYYECVGDVPNVVFPC-AVLCDGETGRLAVYYGGAD 332 A LDL+ ++ + Y++ P E GD P +FPC A L DGE + V YG AD Sbjct: 283 AELDLEGRELVLKAVTPEYIMEPSTLEERFGDRPYTIFPCGAWLVDGE---IIVSYGAAD 339 Query: 333 TVVALAFAYVDELIE 347 T LA +D L E Sbjct: 340 TATGLASIPLDVLEE 354 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 424,303 Number of Sequences: 1700 Number of extensions: 21061 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 1 length of query: 356 length of database: 492,079 effective HSP length: 78 effective length of query: 278 effective length of database: 359,479 effective search space: 99935162 effective search space used: 99935162 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717805|ref|YP_003873337.1| hypothetical protein STHERM_c00880 [Spirochaeta thermophila DSM 6192] (425 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 421,728 Number of Sequences: 1700 Number of extensions: 19479 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 0 length of query: 425 length of database: 492,079 effective HSP length: 79 effective length of query: 346 effective length of database: 357,779 effective search space: 123791534 effective search space used: 123791534 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717806|ref|YP_003873338.1| transporter [Spirochaeta thermophila DSM 6192] (309 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 89 1e-19 gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyru... 62 2e-11 gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum... 50 7e-08 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 89.4 bits (220), Expect = 1e-19 Identities = 72/283 (25%), Positives = 133/283 (46%), Gaps = 30/283 (10%) Query: 18 GYLYILPWVI-GFLFLQVFPIAYSFYISLTKWDLLGTPSFVGWENFRELLE----DEVFF 72 GY L +++ F F+ +F IA S T + L + E + E++ D+ Sbjct: 7 GYFKALVFLLPAFTFITIFVIAPSI---ATVYLSLNVDGHINLEKYAEVVSERSPDKALI 63 Query: 73 L-----------ALRNNLIFMIFXXXXXXXXXXFMAALISEPELPGRRFFRVLFFLPSLV 121 + AL +N+I+M F+A L+ G + + F+ +V Sbjct: 64 MITSRPESPPWGALIHNIIWMALHIPLVTFLGLFLAYLLKYTF--GSSIVKTIVFI-GMV 120 Query: 122 MPVALGLMMAPIFGTENYGLINLVLKKLGLGQVE--WLGDPGLAIWSVVIVNFWT-VGAS 178 +P+ +G ++ E G++ LV K LG+ + W P L++ S+++ + W G S Sbjct: 121 IPMVVGGLIVRFMFDEYVGVVPLVFKALGVDFLAKTWTNYPQLSLLSLILGSVWLWTGFS 180 Query: 179 MIIFLAGITNLPRSYYEAAAIDGAGWWTRLFRITVPLLSPVLLFQLISGLIYGLRIFDLP 238 + ++ A + ++P S+ EAA IDGAG W ++I PL+ P + ++ +++ L+IFD+ Sbjct: 181 LTVYSAALGSIPSSFIEAARIDGAGHWHIFWKIVFPLVRPATIIVVVMTMLWDLKIFDI- 239 Query: 239 AALANIGGSRSVMMGKDNSLAFLVFYLYTKAFRYWEMGSAAAI 281 +A +GG G N LA +++ +A Y + A I Sbjct: 240 VYVATLGGPG----GSSNVLALVMYQYMARALDYQAASAVAVI 278 >gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyrum pernix K1] Length = 314 Score = 61.6 bits (148), Expect = 2e-11 Identities = 79/291 (27%), Positives = 125/291 (42%), Gaps = 25/291 (8%) Query: 26 VIGFLFLQVFPIAYSFYISLTKWDLLGTP-SFVGWENFRELLE----DEVFFLALRNNLI 80 VI F FL + Y+ + ++ W++ VG N++ L+ D +F AL ++ Sbjct: 20 VITFFFLPLLLTVYTSFTNMRNWNVDAYLFDIVGLYNYKVLVHFAKYDPMFRNALITTVV 79 Query: 81 FMIFXXXXXXXXXXFMAALISEPELPGRRFFRVLFFLPSLVMPVALGLMMAPIFGTENYG 140 F+ +A L E +R+L+ LP + L+ F ++ G Sbjct: 80 FVAVTLVVNVLGGLTLAILTFFLEERISIHYRLLWLLPRMTPVAVYSLLWYYFFHSDAIG 139 Query: 141 LINLVLKKLGL--GQVEWLGDPGLAI---WSVVIVNFWTVGAS--MIIFLAGITNLPRSY 193 +N +L G+ + W G L + W ++ VN VG S MI+F + I ++P Y Sbjct: 140 TLNRILLLAGVIDKPINW-GSYMLPLGTWWILIFVN-GLVGVSFGMIVFYSAIRSIPWEY 197 Query: 194 YEAAAIDGAGWWTRLFRITVPLLSPVLLF----QLISGLIYGLRIFDLPAALANIGGSRS 249 AA +DGA + RI VP++ LLF Q++S L IF L G Sbjct: 198 IAAARVDGASNLVIIRRIIVPMIRWHLLFVTVWQMLSLLTTYTHIF-----LLYEWGVVD 252 Query: 250 VMMGKDNSLAFLVFYLYTKAFRYWEMGSAAAIGWVVFLVGFALTVVIIRYM 300 G+ SL LVF L G AAA V+ ++G L +V +R + Sbjct: 253 RTWGQTWSL--LVFNLAFLPVGELRQGLAAAAATVLVVIGAILGLVTLRIL 301 >gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum pernix K1] Length = 288 Score = 50.1 bits (118), Expect = 7e-08 Identities = 70/307 (22%), Positives = 125/307 (40%), Gaps = 38/307 (12%) Query: 7 VSRLLARRNRMGYLYILPWVIGFLFLQVFPIAYSFYISLTKWDLLGTPSF--VGWENFRE 64 +S LL +L + P ++ +PI SF I+ K G+ SF V + + Sbjct: 3 LSSLLQDNRVKAWLLLSPTILYLAVFIAYPIIDSFRIAFVK---NGSISFEAVDFLLYSP 59 Query: 65 LLEDEVFFLALRNNLIFMIFXXXXXXXXXXFMAALISEPELPGRRFFRVLFFLPSLVMPV 124 L E F+ AL+ + I A ++ GR + +P + + Sbjct: 60 LSE---FWSALKYTFLLAILVIPTETLLA-LTAVILLFKRFRGRDAVIYVLVMPLALSDL 115 Query: 125 ALGLMMAPIFGTENYGLINLVLKKLGLGQVEWLGDP---------GLAIWSVVIVNFWTV 175 A GL+ + + G +N +L +GL + DP L +V + W Sbjct: 116 AAGLIWYSMLTGK--GFLNKLLLNMGL-----ISDPIIFFGYENRWLTFLAVYLAEVWRS 168 Query: 176 GASMIIFL-AGITNLPRSYYEAAAIDGAGWWTRLFRITVPLLSPVLLFQLISGLIYGLRI 234 A + + L AG + + +EAA + GA ++ +L I +P++ P L L+ ++ ++ Sbjct: 169 TAIVFVILFAGAQLINKEVFEAAEVFGASFYVKLRHILIPMIKPSLQAALLIRTLFAFQV 228 Query: 235 FDLPAALANIGGSRSVMMGKDNSLAFLVFYLYTKAFRYWEMGSAAAIGWVVFLVGFALTV 294 F + LA G V+ G+ +Y + +Y AA V+ L+ ++ V Sbjct: 229 FAVVWILA--GRDIPVLAGE-------AYYSIVELHKY---DVAALYAIVIALLSASIGV 276 Query: 295 VIIRYMR 301 V IR R Sbjct: 277 VYIRVFR 283 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.147 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 321,112 Number of Sequences: 1700 Number of extensions: 14138 Number of successful extensions: 66 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 3 length of query: 309 length of database: 492,079 effective HSP length: 77 effective length of query: 232 effective length of database: 361,179 effective search space: 83793528 effective search space used: 83793528 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717807|ref|YP_003873339.1| transporter [Spirochaeta thermophila DSM 6192] (285 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 136 7e-34 gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyru... 74 4e-15 gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum... 67 5e-13 gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 46 1e-06 gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease... 41 3e-05 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 136 bits (342), Expect = 7e-34 Identities = 82/249 (32%), Positives = 133/249 (53%), Gaps = 6/249 (2%) Query: 34 PFAWLFASSLKDMGQYFSTDFRTIWFPSPLHWENYVKAFTYVPLL---RYIFNSFWLGAV 90 PF LF S++ G+ + I + +NY+KA++Y P YI NS + Sbjct: 32 PFIGLFMVSVRPYGEVIVKGWWNI-VDATFTMDNYIKAWSYDPYSVSGGYI-NSLIVALP 89 Query: 91 QTVLQVTSSAFVAYGFARFEFKLRGPLFIVLLSTMLLPTEVTMIPLFIFYRAIGWTNSYN 150 TV+ V +++F AYGF+RF F L+ LF+V + M LP ++ ++PLF+ + +G N++ Sbjct: 90 ATVIPVAAASFAAYGFSRFSFPLKSYLFLVTILLMALPQQIVVVPLFLLLKNLGLINTFP 149 Query: 151 PLIVPH-LFGGAWSIFLIRQLMVGIPREMDEAAFIDGAGTFRIWRSIMLPQVKPALFVAG 209 +I+ H +G AW IF ++ +PRE++EAA +DGA FRI+ I+LP P + A Sbjct: 150 GIILVHSAWGMAWIIFFMKNFFDILPREVEEAARVDGASDFRIFYKIVLPMSLPGILSAS 209 Query: 210 LYCFLWSWKDFLGPLIYLNKKELYTLPLGIMFFESPTEVQYTVQLAAVVIALIPTLLIFG 269 + F W W F LI+L + + I + V + + A V A+ L ++ Sbjct: 210 VLQFTWVWSSFFFELIFLIDPSKWVITQRIANMKGTYLVDWGLIAAGSVFAMAVPLAVYM 269 Query: 270 VGQRYFERG 278 + QRY+ RG Sbjct: 270 LLQRYYIRG 278 >gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyrum pernix K1] Length = 302 Score = 73.9 bits (180), Expect = 4e-15 Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 12/186 (6%) Query: 99 SAFVAYGFARFEFKLRGPLFIVLLSTMLLPTEVTMIPLFIFYRAIG----------WTNS 148 S AY +R EFK RG L+ P +I +++ +R IG + + Sbjct: 106 SLLAAYSISRMEFKGRGVFTAGLIMLHAFPGVALIIGVYMIFRIIGDVLGVLGEEFYAIA 165 Query: 149 YNPLIVPHLFGGAWSIFLIRQLMVGIPREMDEAAFIDGAGTFRIWRSIMLPQVKPALFVA 208 Y ++ +I+L + IP E++ +A +DGA R+W SI++P VKP + Sbjct: 166 YI-ILARAALEVPMAIWLFKGFFDKIPWELEWSALVDGASRVRVWWSILVPLVKPGIAAV 224 Query: 209 GLYCFLWSWKDFLGPLIYLNKKELYTLPLGIMFFESPTE-VQYTVQLAAVVIALIPTLLI 267 ++ FL W++F+ ++L + +LP I + E Q T+ AA L+PT++ Sbjct: 225 LIFTFLAGWEEFIYFYVFLKPFGIDSLPTFIEEIVAAAENYQLTIIAAAGTFYLLPTIVF 284 Query: 268 FGVGQR 273 F + QR Sbjct: 285 FVLTQR 290 >gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum pernix K1] Length = 270 Score = 67.0 bits (162), Expect = 5e-13 Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 10/175 (5%) Query: 104 YGFARFEFKLRGPLFIVLLSTMLLPTEVTMIPLFIFYRAIGWTNSYNPLIVPHL-FGGAW 162 Y AR+ F R + + +++T + P V + L + +G ++ L + H + Sbjct: 92 YALARYVFPGRDAVKLAIIATRMFPIIVISVSLLKTFFNLGLNDTLIGLALAHTAMALPF 151 Query: 163 SIFLIRQLMVGIPREMDEAAFIDGAGTFRIWRSIMLPQVKPALFVAGLYCFLWSWKD-FL 221 + + + GIPR+++EA I G + ++ I LP P L AG++ FL SW + F+ Sbjct: 152 VVIITGSIFGGIPRDLEEAGMIFGLSSIMVFLRITLPLAAPGLTAAGMFTFLLSWNEVFM 211 Query: 222 GPLIYLNKKELYTLPLGIM--FFESPTEVQYTVQLAAVVIALIPTLLIFGVGQRY 274 ++ L + TLP I+ F +P E ++ AA + ++P L+ + +RY Sbjct: 212 ASVLTLVNR---TLPAFILNSAFATPIE---PIRFAAAFMLILPALVFMFLARRY 260 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 45.8 bits (107), Expect = 1e-06 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 14/112 (12%) Query: 121 LLSTMLLPTEVTMIPLFIFYRAIG-------WTNSYNPLIVPHLFGGAW-----SIFLIR 168 L+ + V ++PL ++A+G WTN ++ + G W S+ + Sbjct: 128 LIVRFMFDEYVGVVPLV--FKALGVDFLAKTWTNYPQLSLLSLILGSVWLWTGFSLTVYS 185 Query: 169 QLMVGIPREMDEAAFIDGAGTFRIWRSIMLPQVKPALFVAGLYCFLWSWKDF 220 + IP EAA IDGAG + I+ I+ P V+PA + + LW K F Sbjct: 186 AALGSIPSSFIEAARIDGAGHWHIFWKIVFPLVRPATIIVVVMTMLWDLKIF 237 >gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease ModB [Aeropyrum pernix K1] Length = 261 Score = 41.2 bits (95), Expect = 3e-05 Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 19/207 (9%) Query: 79 RYIFNSFWLGAVQTVLQVTSSAFVAYGFARFEFKLR---GPLFIVLLSTMLLPTEVTMIP 135 R + S + +VL VT + AY AR E +L L ++LLS + + Sbjct: 46 RSLVLSLGSSTISSVLAVTLATAPAYAMARQEGRLTRLISQLHLLLLSIPPVGLGTAALI 105 Query: 136 LFIFYRAIGWTNS-----YNP---LIVPHLFGGAWSIFLIRQLMVGIPREMDEAAFIDGA 187 LF Y + + ++P ++ L ++ ++ + +PRE++EAA GA Sbjct: 106 LFTRYPPLNSISETLGLFFSPKAVILAQLLVTTPIAVSMLTGVFSMVPRELEEAAEAYGA 165 Query: 188 GTFRIWRSIMLPQVKPALFVAGLYCFLWSWKDFLGPLIYLNK--KELYTLPLGIMFFESP 245 G +I I+LP P + A F + +F L+ TLPL + S Sbjct: 166 GRLQILIRIVLPLSLPGILSALAVTFFRALGEFGATLVLAGNIPGRTETLPLALYNAISL 225 Query: 246 TEVQ-----YTVQLAAVVIAL-IPTLL 266 +V+ YT+ LA ++ L + TLL Sbjct: 226 ADVETASAIYTLVLAVGLVTLGVHTLL 252 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.145 0.477 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 275,547 Number of Sequences: 1700 Number of extensions: 11498 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 5 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 5 length of query: 285 length of database: 492,079 effective HSP length: 76 effective length of query: 209 effective length of database: 362,879 effective search space: 75841711 effective search space used: 75841711 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717808|ref|YP_003873340.1| hypothetical protein STHERM_c00910 [Spirochaeta thermophila DSM 6192] (206 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.131 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 201,203 Number of Sequences: 1700 Number of extensions: 7630 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 206 length of database: 492,079 effective HSP length: 73 effective length of query: 133 effective length of database: 367,979 effective search space: 48941207 effective search space used: 48941207 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717809|ref|YP_003873341.1| hypothetical protein STHERM_c00920 [Spirochaeta thermophila DSM 6192] (604 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 690,164 Number of Sequences: 1700 Number of extensions: 33857 Number of successful extensions: 86 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86 Number of HSP's gapped (non-prelim): 0 length of query: 604 length of database: 492,079 effective HSP length: 82 effective length of query: 522 effective length of database: 352,679 effective search space: 184098438 effective search space used: 184098438 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717810|ref|YP_003873342.1| HTH-type transcriptional regulator CelR [Spirochaeta thermophila DSM 6192] (337 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 323,536 Number of Sequences: 1700 Number of extensions: 13672 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 337 length of database: 492,079 effective HSP length: 77 effective length of query: 260 effective length of database: 361,179 effective search space: 93906540 effective search space used: 93906540 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717811|ref|YP_003873343.1| glycosylase [Spirochaeta thermophila DSM 6192] (393 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 444,328 Number of Sequences: 1700 Number of extensions: 21887 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 0 length of query: 393 length of database: 492,079 effective HSP length: 79 effective length of query: 314 effective length of database: 357,779 effective search space: 112342606 effective search space used: 112342606 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717812|ref|YP_003873344.1| N-acylglucosamine 2-epimerase [Spirochaeta thermophila DSM 6192] (406 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 434,507 Number of Sequences: 1700 Number of extensions: 19787 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 0 length of query: 406 length of database: 492,079 effective HSP length: 79 effective length of query: 327 effective length of database: 357,779 effective search space: 116993733 effective search space used: 116993733 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717813|ref|YP_003873345.1| hypothetical protein STHERM_c00960 [Spirochaeta thermophila DSM 6192] (2314 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.133 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,210,688 Number of Sequences: 1700 Number of extensions: 99422 Number of successful extensions: 187 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 187 Number of HSP's gapped (non-prelim): 0 length of query: 2314 length of database: 492,079 effective HSP length: 92 effective length of query: 2222 effective length of database: 335,679 effective search space: 745878738 effective search space used: 745878738 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 100 (43.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717814|ref|YP_003873346.1| hypothetical protein STHERM_c00970 [Spirochaeta thermophila DSM 6192] (377 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 427,687 Number of Sequences: 1700 Number of extensions: 20212 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 0 length of query: 377 length of database: 492,079 effective HSP length: 78 effective length of query: 299 effective length of database: 359,479 effective search space: 107484221 effective search space used: 107484221 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717815|ref|YP_003873347.1| peroxiredoxin bcp [Spirochaeta thermophila DSM 6192] (154 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600438|ref|NP_146952.1| thiol peroxidase [Aeropyrum pernix K1] 97 2e-22 gi|14600604|ref|NP_147121.1| thiol peroxidase [Aeropyrum pernix K1] 72 9e-15 gi|118431740|ref|NP_148402.2| thiol peroxidase [Aeropyrum pernix... 67 3e-13 gi|14601964|ref|NP_148509.1| thioredoxin peroxidase [Aeropyrum p... 65 1e-12 >gi|14600438|ref|NP_146952.1| thiol peroxidase [Aeropyrum pernix K1] Length = 163 Score = 97.1 bits (240), Expect = 2e-22 Identities = 59/151 (39%), Positives = 83/151 (54%), Gaps = 7/151 (4%) Query: 5 GEKAPAFTLPDDNGEVRDLSDFADKKKVIYFYPRDNTPGCTKEACGFRDMYETILATGAV 64 GE+AP F GE LSDF + V+YFYPR TPGCT+E F ++ + GAV Sbjct: 5 GEQAPDFEGIAHTGEKIRLSDFRGRIVVLYFYPRAMTPGCTREGVRFNELLDEFEKLGAV 64 Query: 65 VIGISPDSVRSHASFKTRYDLPFFLLSDPEKKVIRAYGALTVRKVKGEEKE-RVRRCTYI 123 VIG+S DSV + F ++ F L+SD + ++ YG V+GE R T+I Sbjct: 65 VIGVSTDSVEKNRKFAEKHGFRFKLVSDEKGEIGMKYGV-----VRGEGSNLAAERVTFI 119 Query: 124 IDEHDVIRAVFPDVRP-EEHAREVLEILSRM 153 ID IRA+ ++RP E+HA LE + ++ Sbjct: 120 IDREGNIRAILRNIRPAEKHADLALEEVKKL 150 >gi|14600604|ref|NP_147121.1| thiol peroxidase [Aeropyrum pernix K1] Length = 110 Score = 71.6 bits (174), Expect = 9e-15 Identities = 38/101 (37%), Positives = 53/101 (52%) Query: 1 MLREGEKAPAFTLPDDNGEVRDLSDFADKKKVIYFYPRDNTPGCTKEACGFRDMYETILA 60 ML G+ AP + +G LS + V+YFYP+ TPGCT+EA GF +YE Sbjct: 1 MLSVGDPAPDIEIQLIDGSTIRLSQLRGRSVVLYFYPKAFTPGCTREAIGFNGLYEEFKK 60 Query: 61 TGAVVIGISPDSVRSHASFKTRYDLPFFLLSDPEKKVIRAY 101 GA VIG+S D + F Y + F L SD E + +++ Sbjct: 61 LGAEVIGVSMDPPGRNRRFAQNYGVRFRLASDVEGEAFKSF 101 >gi|118431740|ref|NP_148402.2| thiol peroxidase [Aeropyrum pernix K1] Length = 161 Score = 66.6 bits (161), Expect = 3e-13 Identities = 41/103 (39%), Positives = 56/103 (54%), Gaps = 2/103 (1%) Query: 1 MLREGEKAPAFTLPDDNGEVRDLSDFADKKK--VIYFYPRDNTPGCTKEACGFRDMYETI 58 M+ GEKAP FTLP+ + E +L + + + V+ F+P +P CTKE C FRD + Sbjct: 1 MVELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQL 60 Query: 59 LATGAVVIGISPDSVRSHASFKTRYDLPFFLLSDPEKKVIRAY 101 A V+ IS DS FK L F LLSD ++VI+ Y Sbjct: 61 EKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLY 103 >gi|14601964|ref|NP_148509.1| thioredoxin peroxidase [Aeropyrum pernix K1] Length = 250 Score = 64.7 bits (156), Expect = 1e-12 Identities = 49/154 (31%), Positives = 71/154 (46%), Gaps = 15/154 (9%) Query: 5 GEKAPAFTLPDDNGEVRDLSDFADKKK--VIYFYPRDNTPGCTKEACGFRDMYETILATG 62 GE+ P + D+G ++ + + K V++ +P D TP CT E F YE G Sbjct: 9 GERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG 68 Query: 63 AVVIGISPDSVRSHASFKTRYD------LPFFLLSDPEKKVIRAYGALTVRKVKGEEKER 116 +IG+S DSV SH +K + +PF +++DP+ V R G L E Sbjct: 69 VDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLL-----HAESATH 123 Query: 117 VRRCTYIIDEHDVIRAVFPDVRPEEHAREVLEIL 150 R +I+D VIR + P E R V EIL Sbjct: 124 TVRGVFIVDARGVIRTML--YYPMELGRLVDEIL 155 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 164,110 Number of Sequences: 1700 Number of extensions: 6865 Number of successful extensions: 27 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 4 length of query: 154 length of database: 492,079 effective HSP length: 70 effective length of query: 84 effective length of database: 373,079 effective search space: 31338636 effective search space used: 31338636 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717816|ref|YP_003873348.1| acyl-ACP thioesterase [Spirochaeta thermophila DSM 6192] (235 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 297,341 Number of Sequences: 1700 Number of extensions: 14693 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 235 length of database: 492,079 effective HSP length: 74 effective length of query: 161 effective length of database: 366,279 effective search space: 58970919 effective search space used: 58970919 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717817|ref|YP_003873349.1| hypothetical protein STHERM_c01000 [Spirochaeta thermophila DSM 6192] (631 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aero... 51 1e-07 gi|118431124|ref|NP_147358.2| surface layer protein [Aeropyrum p... 48 6e-07 >gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aeropyrum pernix K1] Length = 791 Score = 50.8 bits (120), Expect = 1e-07 Identities = 65/318 (20%), Positives = 143/318 (44%), Gaps = 35/318 (11%) Query: 310 EINRNLDSLSTAFRRVLDEQAGPAVEEVEK----IHRAIAELSQV--------VSHQREN 357 EI ++ L T ++ G E +++ I RA + L++ ++ +E Sbjct: 412 EIGELMEELETLQQKAASANQGEVQEILDEAGALIDRASSLLAEARSLLDEGRIAEAKEK 471 Query: 358 VETITSSIEEVNASIQNVTHLLEERMARFEQVREMVHRGGDFLSLANSAVQEIGAAISNV 417 + +++E+ ++ + +LE E+ RE + + L+ A + +Q + A +S Sbjct: 472 IAQAEAALEKADSKLDTAEAILEVVEEYAERAREAIEEAEEALAKAEAKLQ-LAAQLSGS 530 Query: 418 MEIIGIINTVA-AQTNLLSLNAAIESAHAGEA---GRGFAVVAEEIRKLAEATAGYA--- 470 + +N + A+ L + A + GEA A +AEE ++LAE A Sbjct: 531 EAVEEALNRLEEAKEKLEAAKEAYSNGRYGEAIVLAEEAASIAEEAKELAEKAIEAAQEA 590 Query: 471 --------SRITTTLREMRDKVEGATRTSRESVQVFDSVVKEIDESVLALNEVVASVTE- 521 + ++++++++E +RE+ + + + IDE + L++ + + E Sbjct: 591 VSEVLNQVEELLDRVKDLQEEIEDIAEKAREAGVLTEEIQAAIDEVLGKLDQARSLLEEA 650 Query: 522 --MAKGGAQVLEGSQEVSRDARLIDERMKDVSRGADVLRGSIQSVYSLSEDVLRGLTEIE 579 +AK G ++G+++ +AR + E + VS D+ Q++ L +++ R + E+ Sbjct: 651 DSLAKEGD--IDGARQKLGEARDVIE--EAVSMVRDIRSMVEQAIGDLIDELRRLIEELR 706 Query: 580 GGAREILQGASEIERLAR 597 A E+ A+ +E AR Sbjct: 707 EKAAELNTEAAMLEAKAR 724 >gi|118431124|ref|NP_147358.2| surface layer protein [Aeropyrum pernix K1] Length = 1550 Score = 48.1 bits (113), Expect = 6e-07 Identities = 74/368 (20%), Positives = 144/368 (39%), Gaps = 63/368 (17%) Query: 273 LDALQAFFSSVRATVAHLNDLRLTFAHTSSQTV-AAVTEINRNLDSLSTAFRRV------ 325 L +++ S V++ V + D LT T ++ A VTEIN + L T + Sbjct: 1169 LSSVEEGISEVKSIVLAIQD-DLTVIDTKLDSIEATVTEINEGVAILQTDLGNLQASVDE 1227 Query: 326 ---LDEQAGPAVE-EVEKIHRAIAELSQVVSHQRENVETITSSIEEVNASIQNV------ 375 L +Q G + ++++I +AE+S V+ + +V TI ++ +NA++ + Sbjct: 1228 LTELLQQTGEEITMKLDEISGDLAEISNGVATIQGDVATILELLDAMNATLTTIQGDVAE 1287 Query: 376 ----------------THLLEERMARFEQVREMVHRGGDFLSLANSAVQEIGAAISNVME 419 T + + A + V + V D L ++ + A I+ V + Sbjct: 1288 IKTTAGTILVSVQDLQTIVADSTDAVIKAVEDNVALVLDGQQLILESLDTLDAKITAVSD 1347 Query: 420 IIGIINTVAAQT-----NLLSLNAAIESAHAGEAGRGFAVVAEEIRKLAEATAGYASRIT 474 + + T+ +L+ NA IE VV E + LA T + +T Sbjct: 1348 GVAEVQTILGDVSVSLEDLVEANATIEE-----------VVVENNQLLATITTSMGT-LT 1395 Query: 475 TTLREMRDKVEGATRTSRESVQVFDSVVKE-----------IDESVLALNEVVASVTEMA 523 + ++D +E + V S + + I +++ A+ + A +T++ Sbjct: 1396 ADMSTLKDLIESGVNVKLDQVLEDLSTISDQNAQLAAQAEAIAQTLAAVQDDTAKITDIQ 1455 Query: 524 KGGAQVLEGSQEVSRDARLIDERMKDVSRGADVLRGSIQSVYSLSEDVLRGLTEIEGGAR 583 A V V +D I ++ D + D + + SV S D+ L ++ G Sbjct: 1456 STLASVAGDVASVKQDTSTISSKLDDANGKLDSISSKVDSVSSAVADIQEQLGQV-GDTA 1514 Query: 584 EILQGASE 591 E G ++ Sbjct: 1515 ESASGRAQ 1522 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.131 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 533,756 Number of Sequences: 1700 Number of extensions: 21767 Number of successful extensions: 157 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 155 Number of HSP's gapped (non-prelim): 6 length of query: 631 length of database: 492,079 effective HSP length: 83 effective length of query: 548 effective length of database: 350,979 effective search space: 192336492 effective search space used: 192336492 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717818|ref|YP_003873350.1| family 2 glycosyl transferase [Spirochaeta thermophila DSM 6192] (294 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602202|ref|NP_147771.1| glycosyl transferase [Aeropyrum per... 69 1e-13 >gi|14602202|ref|NP_147771.1| glycosyl transferase [Aeropyrum pernix K1] Length = 283 Score = 68.9 bits (167), Expect = 1e-13 Identities = 37/96 (38%), Positives = 60/96 (62%), Gaps = 2/96 (2%) Query: 2 PLVSVVIPVHNRASLLQEALASVVRQTWRDLEVIVVDDGSEDGSAEVGERWGARVVRMAH 61 PLVS+VIP +N L L S+ RQT++++EVI+VD+ S DG+ ++ E++ ARV++ + Sbjct: 17 PLVSIVIPTYNSEKTLSLTLESIKRQTYKNIEVIIVDNYSTDGTVKIAEKYNARVIQTS- 75 Query: 62 CGRPGKVRNVGVEHARGALIAFLDSDDLWKPEKLTR 97 G R +G HA+G + LDSD + + + R Sbjct: 76 -GGLLWARYLGHLHAKGEVELLLDSDQILEHTAIER 110 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 336,907 Number of Sequences: 1700 Number of extensions: 15801 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 1 length of query: 294 length of database: 492,079 effective HSP length: 76 effective length of query: 218 effective length of database: 362,879 effective search space: 79107622 effective search space used: 79107622 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717819|ref|YP_003873351.1| hypothetical protein STHERM_c01020 [Spirochaeta thermophila DSM 6192] (310 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601231|ref|NP_147764.1| glucose-1-phosphate thymidylyltrans... 60 5e-11 gi|14601973|ref|NP_148518.1| sugar-phosphate nucleotidyl transfe... 44 7e-06 >gi|14601231|ref|NP_147764.1| glucose-1-phosphate thymidylyltransferase [Aeropyrum pernix K1] Length = 355 Score = 60.5 bits (145), Expect = 5e-11 Identities = 70/265 (26%), Positives = 120/265 (45%), Gaps = 39/265 (14%) Query: 26 IMKGVIVAAGYGTRFLPATKTVPKELLPLVDTPSLQFIIDEFTASGVDEILVISSRRKKA 85 ++KG+I+AAG G+R P T + PK L+PL+ P +Q+ ID+ + V +I V+ Sbjct: 1 MVKGLILAAGEGSRLRPFTFSRPKHLIPLLGKPIIQYAIDDLVSINVRDIGVVVGYFGDK 60 Query: 86 LEDYXXXXXXXXXXXXXXGKRDLLARIAPPRAHVFIVHQQEMRGTGHALLCA--RPFIGD 143 ++++ L + A + Q++ G HA+ A + FI D Sbjct: 61 IKEF-------------------LGEDSRFGAKFTYIVQKKRLGIAHAIYRAIKQGFI-D 100 Query: 144 EPFVVAYPDDLHFGNPPLTAQLIRTYRETGCCVLASIHDPPDLSRYGVLKLAQDGIHVED 203 + F+V D++ G ++ ++++ E G V + D R+G+ L +DG + Sbjct: 101 KEFIVYLGDNILSGG---ISRHVKSWGEAGSEVHILLTKVRDPGRFGIAVL-RDG-KILK 155 Query: 204 MVEKPAPGTEPSREVSIGRYLF-----TPDVFPLLEEGWKAHTGGEYYHLYALRRLMAQG 258 +VEKP S +G Y+F F L+ W+ GEY ++ + +G Sbjct: 156 LVEKPQ--EHISDLAVVGVYMFRDPELVAKAFSTLKPSWR----GEYEITDLIQWFVDKG 209 Query: 259 -KVVHTRVEGKRIDTGEPSGYLEAI 282 KV + V G D G G L+AI Sbjct: 210 YKVTFSLVTGWWKDVGTYEGLLDAI 234 >gi|14601973|ref|NP_148518.1| sugar-phosphate nucleotidyl transferase [Aeropyrum pernix K1] Length = 239 Score = 43.5 bits (101), Expect = 7e-06 Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 27/183 (14%) Query: 27 MKGVIVAAGYGTRFLPATKTVPKELLPLVDTPSLQFIIDEFTASGVDE-ILVISSRRKKA 85 M +I+A GYG R P T+ PK LL + P L I+ GV+E +L++ +++ Sbjct: 1 MLALILAGGYGKRLRPLTEHKPKPLLEVAGKPVLVHQIEWLRYYGVEEFVLLVGYLKERI 60 Query: 86 LEDYXXXXXXXXXXXXXXGKRDLLARIAPPRAHVFIVHQQEMRGTGHALLCARPFIGDEP 145 +E+ + A + V + + GT AL AR I E Sbjct: 61 IEE--------------------MGSGAKFGVKITYVVEDKPLGTAGALWNARHIIEKEN 100 Query: 146 FVVAYPDDLHFGNPPLTAQLIRTYRETGCCVLASIHDPPDLSRYGVLKLAQDGIHVEDMV 205 V+ D+ P L+R RE +A I P S YG+L+L D +V Sbjct: 101 LVLVVNGDIVTNIDP--DPLVRLVRERE--AVAGIAAVPLRSPYGILEL--DDGNVTGFR 154 Query: 206 EKP 208 EKP Sbjct: 155 EKP 157 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 354,202 Number of Sequences: 1700 Number of extensions: 16649 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 2 length of query: 310 length of database: 492,079 effective HSP length: 77 effective length of query: 233 effective length of database: 361,179 effective search space: 84154707 effective search space used: 84154707 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717820|ref|YP_003873352.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (366 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.143 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 360,811 Number of Sequences: 1700 Number of extensions: 15877 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 366 length of database: 492,079 effective HSP length: 78 effective length of query: 288 effective length of database: 359,479 effective search space: 103529952 effective search space used: 103529952 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717821|ref|YP_003873353.1| hypothetical protein STHERM_c01040 [Spirochaeta thermophila DSM 6192] (226 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 246,126 Number of Sequences: 1700 Number of extensions: 11547 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 226 length of database: 492,079 effective HSP length: 74 effective length of query: 152 effective length of database: 366,279 effective search space: 55674408 effective search space used: 55674408 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717822|ref|YP_003873354.1| tRNA-dihydrouridine synthase C [Spirochaeta thermophila DSM 6192] (334 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 340,512 Number of Sequences: 1700 Number of extensions: 15739 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 334 length of database: 492,079 effective HSP length: 77 effective length of query: 257 effective length of database: 361,179 effective search space: 92823003 effective search space used: 92823003 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717823|ref|YP_003873355.1| hypothetical protein STHERM_c01060 [Spirochaeta thermophila DSM 6192] (729 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aero... 47 1e-06 >gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aeropyrum pernix K1] Length = 791 Score = 47.4 bits (111), Expect = 1e-06 Identities = 58/306 (18%), Positives = 117/306 (38%), Gaps = 37/306 (12%) Query: 427 LSTVLAQGTEESDLA--MREIQSAITEVAESVESQQSTVQKGAEAVSHLMGSIQRVREGV 484 ++T + EE++ A + E+ E+ E +E ++ QK A A G +Q + + Sbjct: 386 ITTTTTREAEETEAAEVLAELTEVEIEIGELMEELETLQQKAASANQ---GEVQEI---L 439 Query: 485 DRQVEAVDASSALRGDLRDAVRTLGHQVDRLTHVREKMSEVVGRMEELGGFSQTIGEVVA 544 D +D +S+L + R + R+ +EK+++ +E+ T ++ Sbjct: 440 DEAGALIDRASSLLAEARSLL-----DEGRIAEAKEKIAQAEAALEKADSKLDTAEAILE 494 Query: 545 SIENVAVRTNXXXXXXXXXXXXX------XXXXXXXXVVAEEVRKL--------AQQSGV 590 +E A R V E + +L A + Sbjct: 495 VVEEYAERAREAIEEAEEALAKAEAKLQLAAQLSGSEAVEEALNRLEEAKEKLEAAKEAY 554 Query: 591 ESSRXXXXXXXXXXXXGLTSASMEELSGEIQEQMGSLSSLMESFQVLIGKFLDSVERVSE 650 + R + + E I+ ++S ++ + L+ + D E + + Sbjct: 555 SNGRYGEAIVLAEEAASIAEEAKELAEKAIEAAQEAVSEVLNQVEELLDRVKDLQEEIED 614 Query: 651 VIEENKRQADLMDRDAQQVNTMIDEVVAVSEQNRAATEEVSAAIRELFAQMGSIRDMARQ 710 + E+ R+A ++ +++ IDEV+ +Q R+ EE + +E G I D ARQ Sbjct: 615 IAEK-AREAGVL---TEEIQAAIDEVLGKLDQARSLLEEADSLAKE-----GDI-DGARQ 664 Query: 711 LAGTAQ 716 G A+ Sbjct: 665 KLGEAR 670 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 639,957 Number of Sequences: 1700 Number of extensions: 27421 Number of successful extensions: 150 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 147 Number of HSP's gapped (non-prelim): 6 length of query: 729 length of database: 492,079 effective HSP length: 84 effective length of query: 645 effective length of database: 349,279 effective search space: 225284955 effective search space used: 225284955 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717824|ref|YP_003873356.1| adenylate cyclase [Spirochaeta thermophila DSM 6192] (553 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 542,523 Number of Sequences: 1700 Number of extensions: 24942 Number of successful extensions: 66 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66 Number of HSP's gapped (non-prelim): 0 length of query: 553 length of database: 492,079 effective HSP length: 81 effective length of query: 472 effective length of database: 354,379 effective search space: 167266888 effective search space used: 167266888 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717825|ref|YP_003873357.1| hypothetical protein STHERM_c01080 [Spirochaeta thermophila DSM 6192] (361 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 426,323 Number of Sequences: 1700 Number of extensions: 22236 Number of successful extensions: 66 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66 Number of HSP's gapped (non-prelim): 0 length of query: 361 length of database: 492,079 effective HSP length: 78 effective length of query: 283 effective length of database: 359,479 effective search space: 101732557 effective search space used: 101732557 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717826|ref|YP_003873358.1| hypothetical protein STHERM_c01090 [Spirochaeta thermophila DSM 6192] (319 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.142 0.474 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 403,015 Number of Sequences: 1700 Number of extensions: 21007 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 319 length of database: 492,079 effective HSP length: 77 effective length of query: 242 effective length of database: 361,179 effective search space: 87405318 effective search space used: 87405318 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717827|ref|YP_003873359.1| hypothetical protein STHERM_c01100 [Spirochaeta thermophila DSM 6192] (393 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 480,841 Number of Sequences: 1700 Number of extensions: 25120 Number of successful extensions: 86 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86 Number of HSP's gapped (non-prelim): 0 length of query: 393 length of database: 492,079 effective HSP length: 79 effective length of query: 314 effective length of database: 357,779 effective search space: 112342606 effective search space used: 112342606 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717828|ref|YP_003873360.1| hypothetical protein STHERM_c01110 [Spirochaeta thermophila DSM 6192] (344 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 422,318 Number of Sequences: 1700 Number of extensions: 22174 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 0 length of query: 344 length of database: 492,079 effective HSP length: 78 effective length of query: 266 effective length of database: 359,479 effective search space: 95621414 effective search space used: 95621414 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717829|ref|YP_003873361.1| hypothetical protein STHERM_c01120 [Spirochaeta thermophila DSM 6192] (798 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aero... 49 4e-07 gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad5... 47 2e-06 >gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aeropyrum pernix K1] Length = 791 Score = 49.3 bits (116), Expect = 4e-07 Identities = 105/470 (22%), Positives = 161/470 (34%), Gaps = 124/470 (26%) Query: 275 QTREAQTALEEARAELGRLSRMEEEARAVENQILGLYREIRSAIQNQEY-GRARELLTAL 333 Q EAQ LEEA L + + A + + + +R + Q Y +A+ L +A Sbjct: 300 QNPEAQKLLEEAEEALAKARERLDRAYILLQEGAKVGEVMREIARAQGYLSKAQALASAA 359 Query: 334 QDLL---------------TQPRVAALTPLSGRRQIDLFITETLSRLIEQEQQA-----R 373 + +L T+ + +T + R + E L+ L E E + Sbjct: 360 EVILLSGPTTETGTAVETATETTITTITTTTTREAEETEAAEVLAELTEVEIEIGELMEE 419 Query: 374 LDTATLLAQSR--------------LLSRIEDLVAQARTALSSGDTARAEELYT---AAL 416 L+T A S L+ R L+A+AR+ L G A A+E AAL Sbjct: 420 LETLQQKAASANQGEVQEILDEAGALIDRASSLLAEARSLLDEGRIAEAKEKIAQAEAAL 479 Query: 417 DAIPAVKESHEYLLQMVSEEEARRREALTSA----------------------------- 447 + + ++ E +L++V E R REA+ A Sbjct: 480 EKADSKLDTAEAILEVVEEYAERAREAIEEAEEALAKAEAKLQLAAQLSGSEAVEEALNR 539 Query: 448 -------LSRAEDAYRRGSHQEALA-------------------------AYREALTYLP 475 L A++AY G + EA+ A E L + Sbjct: 540 LEEAKEKLEAAKEAYSNGRYGEAIVLAEEAASIAEEAKELAEKAIEAAQEAVSEVLNQVE 599 Query: 476 LPASRREALVSSLLDIGGRTALARVERE----------GE-DAASTLLTQARSREAEGDY 524 R + L + DI + A V E G+ D A +LL +A S EGD Sbjct: 600 ELLDRVKDLQEEIEDIAEKAREAGVLTEEIQAAIDEVLGKLDQARSLLEEADSLAKEGDI 659 Query: 525 PSAMEAYARILSRLSRTPAGRQAFEGLTRSMRAYNRQVEQEDTAHEREAARFMEQISSLE 584 A + + R E +R VEQ E R +E+ L Sbjct: 660 DGARQ----------KLGEARDVIEEAVSMVRDIRSMVEQAIGDLIDELRRLIEE---LR 706 Query: 585 EQIEALRSENTRLREERDRMA-RETPTLPPEEEAQLQREIERLTQENDTL 633 E+ L +E L + RM RE L E + ++ IE+L D L Sbjct: 707 EKAAELNTEAAMLEAKARRMGDREALRLIEEARSNIEEAIEKLQDATDKL 756 >gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1] Length = 919 Score = 47.0 bits (110), Expect = 2e-06 Identities = 69/284 (24%), Positives = 127/284 (44%), Gaps = 32/284 (11%) Query: 261 LRRQYEARTEALQAQTREAQTALEEARAELGRLSRMEEEARAVENQILGLYREIRSAIQN 320 + R Y E L+ +E E+ARAE SR++++ R +E +L ++ ++ Sbjct: 479 IARHYRHEAERLRKAAKEKAAEAEKARAE---ASRLQDKRRRIE-LLLSRLNQLEEGLRE 534 Query: 321 QEYGRARELLTALQDL-LTQPRVAALTPLSGR---------------RQIDLFITETLSR 364 + +L A Q L + + R+ L L R+ E L R Sbjct: 535 LGFQTPEDLAKAEQKLRMLRERLEELRKLENSLEEKVRNLSREEVALREAKTRALEVLQR 594 Query: 365 LIEQEQQARLDTATLLAQSRLLSRIEDLVAQAR-TALSSGDTA--RAEELYTAALDAIPA 421 L +E++AR TL ++S+ L R+ LV++A A G TA ++L A +A+ Sbjct: 595 LGIKEEEAREKLKTLSSESKKLERM--LVSKAEDLATRLGITAYRSLDDLLEKAREALEG 652 Query: 422 VKESHEYLLQMVSEEEARRREALTSALSRAEDAYRRGSHQEA-LAAYREALTYLPLPASR 480 V + + + + EE R +E AE +R EA R+ ++ +R Sbjct: 653 VDKELSAIERRL-EEARRLKEEAAKLKWEAEQVMKRLEELEAEEKKLRKEVSRKSEIEAR 711 Query: 481 REALVSSLLDIGGRTALARVERE-GEDAASTLLTQARSREAEGD 523 + + ++L ++ R ++R++RE GE T + + +SR+A G+ Sbjct: 712 LKEVQNTLAELDDR--ISRIDREMGE--LQTRIREMKSRKASGE 751 Score = 43.5 bits (101), Expect = 2e-05 Identities = 105/518 (20%), Positives = 185/518 (35%), Gaps = 40/518 (7%) Query: 264 QYEARTEALQAQTREAQTALEEARAELGRLSRMEEEARAVENQILGLYREIRSAIQ--NQ 321 + E E L+ + R+ ++ + ++E+G+L MEE V + I R RS + N Sbjct: 230 ELEREREELERRARDLESEAKALQSEIGKLETMEEMLVNVTSMI----RSERSKLDTINT 285 Query: 322 EYGRARELLTALQDLLTQPRVAALTPLSGRRQIDLFITETLSRL--IEQEQQARLDTATL 379 A ++++ DL + R A L + + SRL + ++ + D Sbjct: 286 RLRYAESKISSIDDL--EKRRAELRAKASLAHEVAELARLQSRLDKLGRDLEMIRDAVEK 343 Query: 380 LAQSRLLSRIEDLVAQARTALSSGDTARAEE--LYTAALDAIPAVKESHEYLLQMVSE-- 435 L SR L IE +A L ++ EE YT + + + +++SE Sbjct: 344 LEVSRRLKEIESARREAENRLLEARSSIKEEQRRYTLLDYRVTRGRSIVTNIRRVLSECR 403 Query: 436 -EEARRREALTSALSRAE------DAYRRGSHQEALAAYREALTYLPLPASRREALVSSL 488 ++ E S L R + ++ R QEA A EA + + E+ S+ Sbjct: 404 SKDLCGSEKPESVLERLDAVINDLESKARALDQEASALEAEARRLVQALSMLEESGGSAR 463 Query: 489 LDI-GGRTALARVE---REGEDAASTLLTQARSREAEGDYPSAMEAYARILSRLSRTPAG 544 + G R E R A L A+ + AE + A +R+ + R Sbjct: 464 CPVCGAELPPGRAEAIARHYRHEAERLRKAAKEKAAEAE--KARAEASRLQDKRRRIELL 521 Query: 545 RQAFEGLTRSMRAYNRQVEQEDTAHEREAARFMEQI-------SSLEEQIEALRSENTRL 597 L +R Q ++ E++ E++ +SLEE++ L E L Sbjct: 522 LSRLNQLEEGLRELGFQTPEDLAKAEQKLRMLRERLEELRKLENSLEEKVRNLSREEVAL 581 Query: 598 REERDRMARETPTLPPEEEAQLQREIERLTQEND----TLTVKIQELTXXXXXXXXXXXX 653 RE + R L +EE + + +++ L+ E+ L K ++L Sbjct: 582 REAKTRALEVLQRLGIKEE-EAREKLKTLSSESKKLERMLVSKAEDLATRLGITAYRSLD 640 Query: 654 XXXXTTDEELASLKXXXXXXXXXXXXXXXXXXGYASYARSEDQLLSRYGEQGRVEAKSYL 713 E L + A +Q++ R E+ E K Sbjct: 641 DLLEKAREALEGVDKELSAIERRLEEARRLKEEAAKLKWEAEQVMKRL-EELEAEEKKLR 699 Query: 714 DAFLGSSEVEATFPGLLTRIKEYDRAFEKAGREAALLE 751 SE+EA + + E D + RE L+ Sbjct: 700 KEVSRKSEIEARLKEVQNTLAELDDRISRIDREMGELQ 737 Score = 41.6 bits (96), Expect = 8e-05 Identities = 68/303 (22%), Positives = 129/303 (42%), Gaps = 55/303 (18%) Query: 293 LSRMEEEARAVENQILGLYREIRSAIQN-QEYGRARELLTALQDLLTQPRVAALTPLSGR 351 ++R++ + N++LG+ REIR A + +E R RE L L A + + Sbjct: 200 ITRLQSGYMTLRNEVLGVDREIREASKRLEELEREREELERRARDLESEAKALQSEIGKL 259 Query: 352 RQIDLFITETLSRLIEQEQQARLDTATL---LAQSRLLS------RIEDLVAQARTALSS 402 ++ + S + + ++++LDT A+S++ S R +L A+A A Sbjct: 260 ETMEEMLVNVTSMI--RSERSKLDTINTRLRYAESKISSIDDLEKRRAELRAKASLAHEV 317 Query: 403 GDTARAEELYTAALDAIPAVKESHEYLLQMVSEEEARRREALTSALSRAEDAYRRGSHQE 462 + AR + + ++++ E L E +RR + + SA AE+ E Sbjct: 318 AELARLQSRLDKLGRDLEMIRDAVEKL------EVSRRLKEIESARREAENRLL-----E 366 Query: 463 ALAAYREALTYLPLPASRREALVSSLLDIGGRTALARVEREGEDAASTLLTQARSREAEG 522 A ++ +E RR L+ + GR+ + + R +L++ RS++ G Sbjct: 367 ARSSIKEE--------QRRYTLLDYRVT-RGRSIVTNIRR--------VLSECRSKDLCG 409 Query: 523 DYPSAMEAYARILSRLSRTPAGRQAFEGLTRSMRAYNRQVEQEDTAHEREAARFMEQISS 582 E +L RL + + + + R ++QE +A E EA R ++ +S Sbjct: 410 S-----EKPESVLERL----------DAVINDLESKARALDQEASALEAEARRLVQALSM 454 Query: 583 LEE 585 LEE Sbjct: 455 LEE 457 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.128 0.327 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 575,137 Number of Sequences: 1700 Number of extensions: 21333 Number of successful extensions: 146 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 130 Number of HSP's gapped (non-prelim): 8 length of query: 798 length of database: 492,079 effective HSP length: 84 effective length of query: 714 effective length of database: 349,279 effective search space: 249385206 effective search space used: 249385206 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717830|ref|YP_003873362.1| hypothetical protein STHERM_c01130 [Spirochaeta thermophila DSM 6192] (534 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.312 0.129 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 308,865 Number of Sequences: 1700 Number of extensions: 10818 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 534 length of database: 492,079 effective HSP length: 81 effective length of query: 453 effective length of database: 354,379 effective search space: 160533687 effective search space used: 160533687 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717831|ref|YP_003873363.1| pyruvate kinase [Spirochaeta thermophila DSM 6192] (474 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600753|ref|NP_147274.1| pyruvate kinase [Aeropyrum pernix K1] 220 7e-59 >gi|14600753|ref|NP_147274.1| pyruvate kinase [Aeropyrum pernix K1] Length = 458 Score = 220 bits (560), Expect = 7e-59 Identities = 147/422 (34%), Positives = 220/422 (52%), Gaps = 20/422 (4%) Query: 1 MRKNTKIIATISDSRCDFSFIKALIEEGVDAFRLNTAHQTPETSKRVVDAIRK----VSS 56 MR KI+AT+ S S + ++ GVD R+N +H E +++++R+ V Sbjct: 1 MRGPVKIVATVGPSSSSASILAQMLSLGVDVARINASHGGVEQWNSMLESLRRAEEAVGK 60 Query: 57 HVAIVLDTKGPEVRTRLGGAPLEVQEGDVVWVG---GEPVEDAPWFSTSYERFVEDVPEG 113 V + +D +GP VRT P+++++GD+V +G G+ DA +F E + EG Sbjct: 61 RVGVAVDLEGPRVRTG-NSEPVKLEKGDLVTLGFMEGDVPVDA-------RQFFETIDEG 112 Query: 114 ARLLIDDGEIGLLVEERKAGRLVCRVENEGVVKDKKSINVPGVHLSLPALTGKDREYVRF 173 +L+DDG+I L VE + R+ RV GV+ +K + V G LP L+ KDR + F Sbjct: 113 DIVLLDDGKIILQVESVEGFRVKARVLEGGVLGPRKGVVVRGKEPDLPPLSAKDRRALEF 172 Query: 174 AVEEGVDYIAHSFXXXXXXXXXXXXALERAGGDAGTVGIIAKIENREGVDHAEGILDTCD 233 ++GV ++ SF + R G I AKIE GV I + D Sbjct: 173 FADKGVSHVYVSFARSAEHVEKVRTVVRRLG--LRQARIFAKIEGPSGVSRIGEIAEASD 230 Query: 234 GLMIARGDLGIEIPAEEVPAIQKRLIRLCMERAKPVITATQLLHSMIENPRPTRAEVTDI 293 G++IARGDLG+ EE+P IQ+ ++ +R K V+ AT+ L SMIE P PTR+EV DI Sbjct: 231 GVIIARGDLGMHYSLEELPEIQELIVWEARKRYKTVVLATEFLSSMIEKPVPTRSEVVDI 290 Query: 294 ATAVLDGTDALMLSGETAYGKYPVEAVKTMVRVASTAEKMRPELPEHDIVGYTNPVRYFL 353 AVL DALML+GETA GKYPV++V+ M +++S A K P + P + L Sbjct: 291 YQAVLQTADALMLTGETAIGKYPVKSVQWMAKISSRAYKKLATSPPERPRPTSTPYKLAL 350 Query: 354 SQVAMKASYRLPIAAIIVHTYTGRTARLVSSFRGKTPVYVFCHDSRVARRLALSYGVYPR 413 V + S P ++V++ TGR A ++SF+ YV V R + +G P Sbjct: 351 GLVELAESLDSP---LVVYSKTGRFAERLASFKPLKTFYVGVPSREVERVVRHLWGAEPI 407 Query: 414 VI 415 V+ Sbjct: 408 VV 409 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 480,311 Number of Sequences: 1700 Number of extensions: 22659 Number of successful extensions: 78 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 1 length of query: 474 length of database: 492,079 effective HSP length: 80 effective length of query: 394 effective length of database: 356,079 effective search space: 140295126 effective search space used: 140295126 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717832|ref|YP_003873364.1| major facilitator superfamily protein [Spirochaeta thermophila DSM 6192] (766 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.139 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 713,915 Number of Sequences: 1700 Number of extensions: 30288 Number of successful extensions: 139 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 139 Number of HSP's gapped (non-prelim): 0 length of query: 766 length of database: 492,079 effective HSP length: 84 effective length of query: 682 effective length of database: 349,279 effective search space: 238208278 effective search space used: 238208278 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717833|ref|YP_003873365.1| hypothetical protein STHERM_c01160 [Spirochaeta thermophila DSM 6192] (736 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 711,867 Number of Sequences: 1700 Number of extensions: 33428 Number of successful extensions: 113 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113 Number of HSP's gapped (non-prelim): 0 length of query: 736 length of database: 492,079 effective HSP length: 84 effective length of query: 652 effective length of database: 349,279 effective search space: 227729908 effective search space used: 227729908 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717834|ref|YP_003873366.1| hypothetical protein STHERM_c01170 [Spirochaeta thermophila DSM 6192] (121 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 107,474 Number of Sequences: 1700 Number of extensions: 3944 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 121 length of database: 492,079 effective HSP length: 67 effective length of query: 54 effective length of database: 378,179 effective search space: 20421666 effective search space used: 20421666 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717835|ref|YP_003873367.1| hypothetical protein STHERM_c01180 [Spirochaeta thermophila DSM 6192] (173 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.139 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 169,009 Number of Sequences: 1700 Number of extensions: 6928 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 173 length of database: 492,079 effective HSP length: 71 effective length of query: 102 effective length of database: 371,379 effective search space: 37880658 effective search space used: 37880658 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717836|ref|YP_003873368.1| hypothetical protein STHERM_c01190 [Spirochaeta thermophila DSM 6192] (525 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.134 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 405,850 Number of Sequences: 1700 Number of extensions: 15173 Number of successful extensions: 93 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93 Number of HSP's gapped (non-prelim): 0 length of query: 525 length of database: 492,079 effective HSP length: 81 effective length of query: 444 effective length of database: 354,379 effective search space: 157344276 effective search space used: 157344276 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717837|ref|YP_003873369.1| chemotaxis protein methyltransferase [Spirochaeta thermophila DSM 6192] (270 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.144 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 289,404 Number of Sequences: 1700 Number of extensions: 13618 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 270 length of database: 492,079 effective HSP length: 75 effective length of query: 195 effective length of database: 364,579 effective search space: 71092905 effective search space used: 71092905 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717838|ref|YP_003873370.1| chemoreceptor glutamine deamidase CheD [Spirochaeta thermophila DSM 6192] (162 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.143 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 168,180 Number of Sequences: 1700 Number of extensions: 6978 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 162 length of database: 492,079 effective HSP length: 70 effective length of query: 92 effective length of database: 373,079 effective search space: 34323268 effective search space used: 34323268 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717839|ref|YP_003873371.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (355 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 366,709 Number of Sequences: 1700 Number of extensions: 16194 Number of successful extensions: 48 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48 Number of HSP's gapped (non-prelim): 0 length of query: 355 length of database: 492,079 effective HSP length: 78 effective length of query: 277 effective length of database: 359,479 effective search space: 99575683 effective search space used: 99575683 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717840|ref|YP_003873372.1| 3-isopropylmalate dehydratase large subunit [Spirochaeta thermophila DSM 6192] (467 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431535|ref|NP_148060.2| aconitate hydratase [Aeropyrum per... 94 7e-21 >gi|118431535|ref|NP_148060.2| aconitate hydratase [Aeropyrum pernix K1] Length = 903 Score = 94.0 bits (232), Expect = 7e-21 Identities = 93/366 (25%), Positives = 145/366 (39%), Gaps = 46/366 (12%) Query: 129 DSHTSTHGAFGSLGFGIGTSQIRDVLATGTLAMEPLKVRKIEVNGRLGPGVTPKDVILFI 188 DSHT+ G G+G+G + V+ M +V + + G L GVT D++L+I Sbjct: 215 DSHTTMINGLGVFGWGVGGIEAEAVILGQPYYMLLPEVVGVRLVGELREGVTTTDLVLYI 274 Query: 189 INRLGVKGGIGYAYEYAGDVFEDMEMDGRMTVCNMSIEGGARIGYVNPDEKTFAYLKG-- 246 +L K +G EY G+ + + + R T+ NM+ E GA +G+ DE T YL+G Sbjct: 275 TEKLRKKNVVGKFVEYFGEGVKKLSVPDRATIANMAPEYGATMGFFPVDEATLEYLRGTG 334 Query: 247 --REFAPRGEAWDRAVAYWRSXXXXXXXXXXXXXXXXXXEIAPMVTWGITPGQSVPVDGV 304 E + + W S ++ P ++ G S P D + Sbjct: 335 RPEWLVQLVERYTKETGLWYS-LEDPEPRYSDVVEIDLSDVEPSIS-----GPSHPEDRI 388 Query: 305 LPDPAALPESEREIAELAYRHM---GFRPG----------MRILGTRIDVAFVGSCTNGR 351 L E++ + ++ ++ G P + + + A + SCTN Sbjct: 389 -----PLREAKERVRKIIMEYLEKKGRGPAIVELKLGDEEVHLTDGSVVYAALTSCTNTS 443 Query: 352 ISDLRAAAELV------RGKKVAPHVRAFVVPGSMQVKRQAEEEGLHEIFMDAGFEWRGA 405 + AA L+ +G + P V+ PGS V GL GF G Sbjct: 444 NPSVMIAAALLARNAVKKGLRTRPWVKTSNAPGSRVVPEYWNRLGLMPYLEALGFHITGY 503 Query: 406 GCSICLGMNLDRLEGD-----------QISASSSNRNFIGRQGSPKGRTLLMSPQMVAAA 454 GC++C+G N L + + S NRNF GR L SP +V A Sbjct: 504 GCTVCIG-NSGPLRPEIEEAIREHDLWVATVLSGNRNFSGRIHPLARGNFLASPPLVVAY 562 Query: 455 AIAGEV 460 A+AG V Sbjct: 563 ALAGRV 568 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 496,424 Number of Sequences: 1700 Number of extensions: 22878 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66 Number of HSP's gapped (non-prelim): 2 length of query: 467 length of database: 492,079 effective HSP length: 80 effective length of query: 387 effective length of database: 356,079 effective search space: 137802573 effective search space used: 137802573 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717841|ref|YP_003873373.1| 3-isopropylmalate dehydratase small subunit [Spirochaeta thermophila DSM 6192] (198 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431535|ref|NP_148060.2| aconitate hydratase [Aeropyrum per... 42 1e-05 >gi|118431535|ref|NP_148060.2| aconitate hydratase [Aeropyrum pernix K1] Length = 903 Score = 42.0 bits (97), Expect = 1e-05 Identities = 20/50 (40%), Positives = 31/50 (62%) Query: 67 ILVANANFGCGSSREHAAQAVMRWGIRAIVAESYGEIFAGNCTMIGVPPV 116 I++A +G GSSR+ AA+ G++A++AESY I N +GV P+ Sbjct: 770 IVLAGKQYGVGSSRDWAAKGPALLGVKAVIAESYERIHRSNLVGMGVLPL 819 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 208,594 Number of Sequences: 1700 Number of extensions: 9163 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 1 length of query: 198 length of database: 492,079 effective HSP length: 72 effective length of query: 126 effective length of database: 369,679 effective search space: 46579554 effective search space used: 46579554 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717842|ref|YP_003873374.1| leucyl aminopeptidase [Spirochaeta thermophila DSM 6192] (385 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431722|ref|NP_148371.2| aminopeptidase [Aeropyrum pernix K1] 74 5e-15 >gi|118431722|ref|NP_148371.2| aminopeptidase [Aeropyrum pernix K1] Length = 372 Score = 74.3 bits (181), Expect = 5e-15 Identities = 72/220 (32%), Positives = 100/220 (45%), Gaps = 45/220 (20%) Query: 172 KVKARLEGAVEVHVTSPSGTDLRFSVEGRTPFLDDGLFREPGEGGNLPAGEVFVSPVVGS 231 KV A L A E+ V S SGTD+ F VEGR DDG N+P GEVF +P Sbjct: 187 KVAALLSKASELRVVS-SGTDITFRVEGRIWINDDGK-------KNMPGGEVFTAPHEDG 238 Query: 232 AEGMVAFDGSIALAEGIAIPSTPVRVTFEEGYVVSV---EGEDXXXXXXXXXXXXGKKRA 288 EG+V FD A+ G+ + VR+ F G VV +GE+ R Sbjct: 239 VEGVVTFDFP-AVWRGLEVEG--VRLEFRGGQVVKASASKGEEHL-------------RR 282 Query: 289 LAFEQEGLLPRGQGEVYARNARHLGEFGIGLN-EKARIVGNMLEDEKVYGTCHFAIGSNY 347 + EG A+ LGE GLN + R + N+L DEK+ GT H A+G+ Y Sbjct: 283 ILETDEG-------------AKRLGELAFGLNYDIQRHIKNILFDEKIGGTMHMALGAAY 329 Query: 348 DEDA---KALIHLDALVKNPTIRVRRDSSWEVLMEEGTLV 384 ++ IH D +VK+ R + +++ E G + Sbjct: 330 PSTGGRNQSAIHWD-MVKDLRRESRVYADGDLIFENGRFI 368 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 405,326 Number of Sequences: 1700 Number of extensions: 19287 Number of successful extensions: 71 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 1 length of query: 385 length of database: 492,079 effective HSP length: 78 effective length of query: 307 effective length of database: 359,479 effective search space: 110360053 effective search space used: 110360053 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717843|ref|YP_003873375.1| hypothetical protein STHERM_c01260 [Spirochaeta thermophila DSM 6192] (420 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 394,400 Number of Sequences: 1700 Number of extensions: 16764 Number of successful extensions: 66 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66 Number of HSP's gapped (non-prelim): 0 length of query: 420 length of database: 492,079 effective HSP length: 79 effective length of query: 341 effective length of database: 357,779 effective search space: 122002639 effective search space used: 122002639 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717844|ref|YP_003873376.1| thioredoxin [Spirochaeta thermophila DSM 6192] (118 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431868|ref|NP_148604.2| thioredoxin [Aeropyrum pernix K1] 47 2e-07 gi|118431901|ref|NP_148649.2| thioredoxin [Aeropyrum pernix K1] 43 3e-06 >gi|118431868|ref|NP_148604.2| thioredoxin [Aeropyrum pernix K1] Length = 159 Score = 46.6 bits (109), Expect = 2e-07 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 31 AIIDFYADWCGPCKMVAPILEEIADE-YEGKLVVYKVNTDEEQELAMVFGIQSIPSILFI 89 A+I F A+WCG C ++ IL IA + +V +V+ D LA +G+Q IP+ L I Sbjct: 59 AVILFTAEWCGRCILMQDILTRIASRLFRDDIVFGRVDVDRAFSLAERYGVQHIPTTLII 118 Query: 90 PVEEQPQLAVGAIPRE-VFDQAIKEVLHVE 118 VG++ E + ++ +E+ +E Sbjct: 119 VEGRVVDALVGSVSEEKLLERINRELTDIE 148 >gi|118431901|ref|NP_148649.2| thioredoxin [Aeropyrum pernix K1] Length = 143 Score = 42.7 bits (99), Expect = 3e-06 Identities = 24/81 (29%), Positives = 37/81 (45%) Query: 35 FYADWCGPCKMVAPILEEIADEYEGKLVVYKVNTDEEQELAMVFGIQSIPSILFIPVEEQ 94 FY C C+M+ P+ EE A Y GK + VN ++ GI P+I+ + Sbjct: 57 FYTPTCPYCRMLKPVFEEAARFYRGKALFAAVNLARFPFMSDALGIMGTPTIIAFVRGRE 116 Query: 95 PQLAVGAIPREVFDQAIKEVL 115 VG +P E + ++ VL Sbjct: 117 AGRLVGLMPPERLEAFVEAVL 137 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 113,244 Number of Sequences: 1700 Number of extensions: 4449 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 2 length of query: 118 length of database: 492,079 effective HSP length: 66 effective length of query: 52 effective length of database: 379,879 effective search space: 19753708 effective search space used: 19753708 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717845|ref|YP_003873377.1| hypothetical protein STHERM_c01280 [Spirochaeta thermophila DSM 6192] (224 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 207,656 Number of Sequences: 1700 Number of extensions: 8885 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 224 length of database: 492,079 effective HSP length: 74 effective length of query: 150 effective length of database: 366,279 effective search space: 54941850 effective search space used: 54941850 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717846|ref|YP_003873378.1| hypothetical protein STHERM_c01290 [Spirochaeta thermophila DSM 6192] (184 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 188,882 Number of Sequences: 1700 Number of extensions: 8223 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 0 length of query: 184 length of database: 492,079 effective HSP length: 72 effective length of query: 112 effective length of database: 369,679 effective search space: 41404048 effective search space used: 41404048 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717847|ref|YP_003873379.1| 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [Spirochaeta thermophila DSM 6192] (259 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.145 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 260,944 Number of Sequences: 1700 Number of extensions: 11389 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 259 length of database: 492,079 effective HSP length: 75 effective length of query: 184 effective length of database: 364,579 effective search space: 67082536 effective search space used: 67082536 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717848|ref|YP_003873380.1| phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase [Spirochaeta thermophila DSM 6192] (189 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 194,002 Number of Sequences: 1700 Number of extensions: 8288 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 189 length of database: 492,079 effective HSP length: 72 effective length of query: 117 effective length of database: 369,679 effective search space: 43252443 effective search space used: 43252443 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717849|ref|YP_003873381.1| hypothetical protein STHERM_c01320 [Spirochaeta thermophila DSM 6192] (379 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.143 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 373,469 Number of Sequences: 1700 Number of extensions: 16105 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 379 length of database: 492,079 effective HSP length: 78 effective length of query: 301 effective length of database: 359,479 effective search space: 108203179 effective search space used: 108203179 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717850|ref|YP_003873382.1| hypothetical protein STHERM_c01330 [Spirochaeta thermophila DSM 6192] (513 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 571,776 Number of Sequences: 1700 Number of extensions: 27764 Number of successful extensions: 78 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78 Number of HSP's gapped (non-prelim): 0 length of query: 513 length of database: 492,079 effective HSP length: 81 effective length of query: 432 effective length of database: 354,379 effective search space: 153091728 effective search space used: 153091728 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717851|ref|YP_003873383.1| transketolase [Spirochaeta thermophila DSM 6192] (656 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431112|ref|NP_147340.2| transketolase [Aeropyrum pernix K1] 75 6e-15 gi|14600816|ref|NP_147339.1| transketolase [Aeropyrum pernix K1] 49 4e-07 >gi|118431112|ref|NP_147340.2| transketolase [Aeropyrum pernix K1] Length = 236 Score = 74.7 bits (182), Expect = 6e-15 Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 16/186 (8%) Query: 61 RFVLSAGHGSMWLYSLLHLAGFDLPLDEIKR-FRQLGSKTPGHPEYGHTAGVETTTGPLG 119 R +LS GH S+ Y+LL G L ++R F + GS HPE G T + G LG Sbjct: 60 RVILSKGHASLGFYALLEEMGL-LERGSVERLFARPGSPLQAHPEAGRTPLTLVSNGSLG 118 Query: 120 QGFANAVGMAIAQEMLAARFNTPEFPLIDHYVYALAGDGCLMEGVSAEAASLAGHLKLGR 179 Q + + G+ I + R V + GDG L EG EAA+ A ++L Sbjct: 119 QALSVSNGLVIGSRLKGRRVE----------VAVVLGDGELDEGQVWEAAATAAAMRLWE 168 Query: 180 LIVFYDSNRITIEGETD-LAFTEDVGARFSAYGWQVLEGDGYDMEGILSLVEKAKAERER 238 ++ D NR+ GET+ + E + R+ ++GW+ + +G E +L +A +R Sbjct: 169 VVAIVDRNRVQHTGETEAIKPKEPLEDRWRSFGWEAVTVEGRVEEIARALDSRA---GDR 225 Query: 239 PTLIIL 244 PT II+ Sbjct: 226 PTAIIV 231 >gi|14600816|ref|NP_147339.1| transketolase [Aeropyrum pernix K1] Length = 322 Score = 48.9 bits (115), Expect = 4e-07 Identities = 52/165 (31%), Positives = 68/165 (41%), Gaps = 8/165 (4%) Query: 354 RKASGEVLKALAAGVPNLVGGSADLAPSNNTALPGYGDFSVEDRTGRTLHYGVREHAMGA 413 RKA G +L LA+ + +LV AD S A+ Y R L+ G+ E + Sbjct: 13 RKALGRLLARLASELEDLVVLDADTLRSTG-AIEVY-----RSAPRRVLNMGISEQDLIG 66 Query: 414 VANGIALYGGLRTFCATFLVFSDYMRPPIRLAALM-GLPVTYVFTHDSIFVGEDGPTHQP 472 A GIAL GLR F F IR GL V V TH + DG +HQ Sbjct: 67 TAAGIAL-AGLRPVVTGFGAFLMRGWEQIRNTVDRDGLNVKIVATHTGLSPHVDGSSHQV 125 Query: 473 VEHLASLRAIPNLLVLRPGDAEETVLAWRLAMESSSTPVVLALSR 517 +E LA +R++ V P D TV + P + L R Sbjct: 126 LEDLALMRSLARTAVFSPADDVATVETVEWLVRRYRGPAYVRLGR 170 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 718,739 Number of Sequences: 1700 Number of extensions: 34443 Number of successful extensions: 109 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 107 Number of HSP's gapped (non-prelim): 2 length of query: 656 length of database: 492,079 effective HSP length: 83 effective length of query: 573 effective length of database: 350,979 effective search space: 201110967 effective search space used: 201110967 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717852|ref|YP_003873384.1| xylulose kinase [Spirochaeta thermophila DSM 6192] (500 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430842|ref|NP_146905.2| carbohydrate kinase [Aeropyrum per... 129 2e-31 gi|118430988|ref|NP_147135.2| carbohydrate kinase [Aeropyrum per... 42 3e-05 >gi|118430842|ref|NP_146905.2| carbohydrate kinase [Aeropyrum pernix K1] Length = 506 Score = 129 bits (323), Expect = 2e-31 Identities = 128/517 (24%), Positives = 219/517 (42%), Gaps = 45/517 (8%) Query: 4 LLGFDVGSSSIKASLLDAETGKRVAQAVSPQVELEIKALKPGWAEQSPLTWWEHVKRAAA 63 +L D+G++ IKA L+D T + + V + + GW+EQ P W+ + RA++ Sbjct: 7 ILSIDIGTTRIKAGLVDCNTLEITGRG---SVSTPVSYPRKGWSEQDPEELWQAIVRASS 63 Query: 64 MVREQAPSGMAQVAGIGISYQMHGLVTLDREGRPLRDAIIWCDSRAVPYGEKAFRALGPE 123 E + ++V+G+ S + G+V LDR+ L I W D RA + F + Sbjct: 64 AALEGFEA--SRVSGVIFSTYLAGVVLLDRDNYELTPIITWLDERAHGLPRELFSGVLKV 121 Query: 124 RC-----LAELLNSPGNFTA-------AKLAWVKEHEPDVFERIWKIMLPGDYIAYRFTG 171 L +LL G + +K+ W++E++PD+F + I ++ + Sbjct: 122 SGYNLLHLVDLLRLTGGAPSKTGKDPLSKMVWLRENKPDLFTKAHTIGTLKTWVLAKTAE 181 Query: 172 RVATTPSGLSEGILWDVKDDGPARF---LMEYFGFPEDILPEVVPSFSDQGRVLKEVAEE 228 +P L D + G A + L +G P + LP + G ++ A + Sbjct: 182 ARLVSPDDAHLTWLADTRG-GRAVWSPRLARRYGIPLEKLPGIAGPTDVAGGLVSSAARD 240 Query: 229 LGIPAGVPVAYRAGDQPNNAFSLAVLNPGEAAATAGTSGVVYGVTDRPAYDTRSRVNTFV 288 LG+P G+PV AGD ++A L GE GTS + + R D R + + + Sbjct: 241 LGLPQGIPVIVGAGDIASSAVGSGALAAGEYHIYVGTSSWIGVHSTRRLLDVRHYIGSLL 300 Query: 289 HVNHGKTHPRYGVLLCLNGTGILNRWVKQQAVDLDDRTVGYEVLNEWASRVPVGSEGVVI 348 G+ Y V+ G + W+ LD + Y + + S +P GSEG++ Sbjct: 301 SAKPGE----YLVIGEQEIAGGMIDWI------LDVTGMDYRAVEDIHS-IPPGSEGLIA 349 Query: 349 LPYGNGAERTLENRDIGGSIHHLNFNIHRREHLLRAAQEGIVFALAYGMEIMEEMGMPTE 408 P+ G +++ G + L H ++HL+RAA EG+ +A+ ME M + + Sbjct: 350 TPWLYGERTPIDDPHAKGVLVGLTLR-HTKKHLVRAAVEGVALNIAWAMEHMTRLAGKPK 408 Query: 409 VVR---AGHANMFLSPLFREAFANT--TGARIELFDTDGSEXXXXXXXXXXXIYSRPEEA 463 +VR G L+ + A T T ++ E+ G+ I S E Sbjct: 409 LVRGVGGGFRLRTLAKVIASALNATIETVSQPEMAGVRGAGALAAAALKGSSIES--EAG 466 Query: 464 YVGLSRKGEVSPE-----PDLMERYREAYERWKETLR 495 + +S + E DL++ Y+E Y R K R Sbjct: 467 KIPVSWRAEADSNASKAYKDLLQIYQEIYSRLKSVFR 503 >gi|118430988|ref|NP_147135.2| carbohydrate kinase [Aeropyrum pernix K1] Length = 475 Score = 42.0 bits (97), Expect = 3e-05 Identities = 68/265 (25%), Positives = 95/265 (35%), Gaps = 33/265 (12%) Query: 4 LLGFDVGSSSIKASLLDAETGKRVAQAVSPQVELEIKALKPGWAEQSPLTWWEHVKRAAA 63 L DVG+S I+ SL + G V+ E EQ L +V+ Sbjct: 6 LCSVDVGTSGIRLSLYGEDLG-----LVARYTEELTLYYSGNRVEQDALILAANVRD--- 57 Query: 64 MVREQAPSGMAQVAGIGISYQMHGLVTLDREGRPLRDAIIWCDSRAVPYGEK---AFRAL 120 M+ + A SG V G+ I G V R G+PL D I W DSR + K R + Sbjct: 58 MLGKAARSG-CNVVGLSI---YRGSVVAWRNGKPLSDVITWMDSRGLEEYSKLPLGARLV 113 Query: 121 GPERCLAELLNSPGNFTAAKLAWVKEHEPDVFERIWKIMLPGDYIAYRFTGRVATTPSGL 180 L + L + W+ + P RIW I +++ TG + P Sbjct: 114 SKSPVLGKALKPGSPALVMRRLWL--NHPGA--RIWSI---DGFLSDMLTGEFTSDPGQA 166 Query: 181 SEGILWDVKDDGPARFLMEYFGFPEDILPEVVPSFSDQGRVLKEVAEELGIPAGVPVAYR 240 + L P ++ G LP + R+ E +G GV V Sbjct: 167 ALTGLVSPYSLKPLSLVIRLLGLRGLELPRL--------RLHNEPLTRVG---GVLVGPM 215 Query: 241 AGDQPNNAFSLAVLNPGEAAATAGT 265 DQ + L L PG AT GT Sbjct: 216 VADQQAASIGLGCLRPGCVKATLGT 240 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 555,953 Number of Sequences: 1700 Number of extensions: 26804 Number of successful extensions: 93 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 84 Number of HSP's gapped (non-prelim): 2 length of query: 500 length of database: 492,079 effective HSP length: 81 effective length of query: 419 effective length of database: 354,379 effective search space: 148484801 effective search space used: 148484801 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717853|ref|YP_003873385.1| hypothetical protein STHERM_c01360 [Spirochaeta thermophila DSM 6192] (609 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 653,977 Number of Sequences: 1700 Number of extensions: 31077 Number of successful extensions: 90 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90 Number of HSP's gapped (non-prelim): 0 length of query: 609 length of database: 492,079 effective HSP length: 82 effective length of query: 527 effective length of database: 352,679 effective search space: 185861833 effective search space used: 185861833 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717854|ref|YP_003873386.1| lipoprotein [Spirochaeta thermophila DSM 6192] (454 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 468,139 Number of Sequences: 1700 Number of extensions: 21077 Number of successful extensions: 81 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81 Number of HSP's gapped (non-prelim): 0 length of query: 454 length of database: 492,079 effective HSP length: 80 effective length of query: 374 effective length of database: 356,079 effective search space: 133173546 effective search space used: 133173546 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717855|ref|YP_003873387.1| DHH superfamily protein, subfamily 1 [Spirochaeta thermophila DSM 6192] (320 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 330,079 Number of Sequences: 1700 Number of extensions: 15103 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 320 length of database: 492,079 effective HSP length: 77 effective length of query: 243 effective length of database: 361,179 effective search space: 87766497 effective search space used: 87766497 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717856|ref|YP_003873388.1| TraB family protein [Spirochaeta thermophila DSM 6192] (397 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 385,685 Number of Sequences: 1700 Number of extensions: 16282 Number of successful extensions: 68 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 0 length of query: 397 length of database: 492,079 effective HSP length: 79 effective length of query: 318 effective length of database: 357,779 effective search space: 113773722 effective search space used: 113773722 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717857|ref|YP_003873389.1| transmembrane protein [Spirochaeta thermophila DSM 6192] (249 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.141 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 239,567 Number of Sequences: 1700 Number of extensions: 9108 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 249 length of database: 492,079 effective HSP length: 75 effective length of query: 174 effective length of database: 364,579 effective search space: 63436746 effective search space used: 63436746 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717858|ref|YP_003873390.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (751 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 637,322 Number of Sequences: 1700 Number of extensions: 27611 Number of successful extensions: 117 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117 Number of HSP's gapped (non-prelim): 0 length of query: 751 length of database: 492,079 effective HSP length: 84 effective length of query: 667 effective length of database: 349,279 effective search space: 232969093 effective search space used: 232969093 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717859|ref|YP_003873391.1| hypothetical protein STHERM_c01420 [Spirochaeta thermophila DSM 6192] (447 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 395,532 Number of Sequences: 1700 Number of extensions: 15245 Number of successful extensions: 90 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90 Number of HSP's gapped (non-prelim): 0 length of query: 447 length of database: 492,079 effective HSP length: 80 effective length of query: 367 effective length of database: 356,079 effective search space: 130680993 effective search space used: 130680993 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717860|ref|YP_003873392.1| thiamine biosynthesis protein ThiC [Spirochaeta thermophila DSM 6192] (424 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 433,479 Number of Sequences: 1700 Number of extensions: 19216 Number of successful extensions: 67 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 0 length of query: 424 length of database: 492,079 effective HSP length: 79 effective length of query: 345 effective length of database: 357,779 effective search space: 123433755 effective search space used: 123433755 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717861|ref|YP_003873393.1| thiamine-phosphate pyrophosphorylase [Spirochaeta thermophila DSM 6192] (383 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 396,976 Number of Sequences: 1700 Number of extensions: 18545 Number of successful extensions: 85 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85 Number of HSP's gapped (non-prelim): 0 length of query: 383 length of database: 492,079 effective HSP length: 78 effective length of query: 305 effective length of database: 359,479 effective search space: 109641095 effective search space used: 109641095 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717862|ref|YP_003873394.1| hypothetical protein STHERM_c01450 [Spirochaeta thermophila DSM 6192] (234 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601507|ref|NP_148046.1| ATP-dependent adenyltransferase [Ae... 74 2e-15 >gi|14601507|ref|NP_148046.1| ATP-dependent adenyltransferase [Aeropyrum pernix K1] Length = 267 Score = 74.3 bits (181), Expect = 2e-15 Identities = 48/113 (42%), Positives = 66/113 (58%), Gaps = 6/113 (5%) Query: 23 LGPRERGVLARVRVGILGAGGLGSMAAQALVRTGVRHLVVADPDVVEASNLNRQ-FYFVD 81 LG R + L+ +V ++G GGLG++AA L +GV L++ D DVVE SNLNRQ Y Sbjct: 30 LGVRGQLRLSSSKVAVVGLGGLGNLAAAYLAASGVGRLILVDRDVVEPSNLNRQVLYGKG 89 Query: 82 QVGRAKVEALGENLRRINPEVEVE--GHRLEVRSAEELERVFRGCEVLVEAVD 132 VGR K A E L +NPE E+E L+ AE+L R +V+V+ +D Sbjct: 90 DVGRYKAVAAAERLGELNPEAEIEPVPEALDPALAEDLA---READVIVDGLD 139 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 241,713 Number of Sequences: 1700 Number of extensions: 10270 Number of successful extensions: 71 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 1 length of query: 234 length of database: 492,079 effective HSP length: 74 effective length of query: 160 effective length of database: 366,279 effective search space: 58604640 effective search space used: 58604640 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717863|ref|YP_003873395.1| hypothetical protein STHERM_c01460 [Spirochaeta thermophila DSM 6192] (375 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600565|ref|NP_147082.1| hypothetical protein APE_0252 [Aero... 46 2e-06 >gi|14600565|ref|NP_147082.1| hypothetical protein APE_0252 [Aeropyrum pernix K1] Length = 392 Score = 45.8 bits (107), Expect = 2e-06 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 11/134 (8%) Query: 37 LSPEDLLVLLSPAAVPFLEAMAVKARRLTVQHFGR-VISLYTPLYVSNYCVNRCVYCGFH 95 L+ D+ LLS + + A A R+ + G ++++Y L +N CV RC +C F+ Sbjct: 30 LTRSDIERLLSETPLHPMAAAADYYARVIKKGVGSYIVNIY--LAYTNVCVTRCTFCDFY 87 Query: 96 AGAPVQRRQLSFXX-----XXXXXXXXXXQGFRDVLLLTGEDRRRTPVAYIEEAVRILTR 150 P +RR + G R+V ++ G D P+ Y EEA+R + R Sbjct: 88 V--PPERRSSGYTHPPEHLGRVAGLARKRLGVREVHMVGGNDPE-LPLEYYEEAIREIKR 144 Query: 151 LFPSVGIEIYPLEE 164 + P V ++ + EE Sbjct: 145 VAPGVVLKAFTAEE 158 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 412,177 Number of Sequences: 1700 Number of extensions: 19716 Number of successful extensions: 88 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 87 Number of HSP's gapped (non-prelim): 1 length of query: 375 length of database: 492,079 effective HSP length: 78 effective length of query: 297 effective length of database: 359,479 effective search space: 106765263 effective search space used: 106765263 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717864|ref|YP_003873396.1| thiazole biosynthesis protein ThiG [Spirochaeta thermophila DSM 6192] (261 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 265,961 Number of Sequences: 1700 Number of extensions: 11953 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 0 length of query: 261 length of database: 492,079 effective HSP length: 75 effective length of query: 186 effective length of database: 364,579 effective search space: 67811694 effective search space used: 67811694 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717865|ref|YP_003873397.1| hypothetical protein STHERM_c01480 [Spirochaeta thermophila DSM 6192] (65 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.144 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,310 Number of Sequences: 1700 Number of extensions: 3497 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 65 length of database: 492,079 effective HSP length: 37 effective length of query: 28 effective length of database: 429,179 effective search space: 12017012 effective search space used: 12017012 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717866|ref|YP_003873398.1| hypothetical protein STHERM_c01490 [Spirochaeta thermophila DSM 6192] (397 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431608|ref|NP_148197.2| glyoxylate reductase [Aeropyrum pe... 92 2e-20 gi|118431906|ref|NP_148658.2| glyoxylate reductase [Aeropyrum pe... 77 7e-16 gi|118431387|ref|NP_147833.2| glyoxylate reductase [Aeropyrum pe... 60 9e-11 >gi|118431608|ref|NP_148197.2| glyoxylate reductase [Aeropyrum pernix K1] Length = 335 Score = 92.0 bits (227), Expect = 2e-20 Identities = 77/312 (24%), Positives = 133/312 (42%), Gaps = 18/312 (5%) Query: 2 FKIQTLNKISPKGLEIFPRDLYEVASEFTHPDAILVRSADMHQMEIPSSVLAIARAGAGV 61 + ++ +K P E E + +T +L D + + +A+ G Sbjct: 24 YDVEVWDKYQPPPYETLLSKAREADALYT----LLTDRIDCDLLSQAPRLRIVAQMAVGF 79 Query: 62 NNIPVERCTERGIVVFNTPGANANSVKELVIAGLLIASRKIIRAVEWVRSIADEGDRVSE 121 +NI VE T GI V NTPG + E A +L A+R+++ A +VR G+ Sbjct: 80 DNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVR----WGEWWRL 135 Query: 122 LVEKEKSRFTGPEXXXXXXXXXXXXXXXXMVANAAVSLEMEVIGYDPYISVEAAWGLSSK 181 G E VA + M +I + E L ++ Sbjct: 136 RTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIGKAFGMRIIYHSRSRKREIEKELGAE 195 Query: 182 VQRAETLEKLIREADYITLHVPLNDDTRGMLNYEKFRMMKRGVKILNFARGGLVNNRDIL 241 + +LE L+RE+D +++H+PL D+TR ++ + ++MK+ ++N RG +V+ ++ Sbjct: 196 YR---SLEDLLRESDILSIHLPLTDETRHLIGESELKLMKKTAILVNTGRGAIVDTGALV 252 Query: 242 RAIEEGIVDRYVTDFPEAE-------LLRCENVIPIPHLGASTPEAEENCAIMAVQQLRD 294 +A+ EG + D E E L +NV+ PH ++T E A+MA + L Sbjct: 253 KALREGWIAAAALDVFEEEPLNPNHPLTAFKNVVLAPHAASATRETRLRMAMMAAENLVA 312 Query: 295 FLERGNIRNSVN 306 F + N VN Sbjct: 313 FAQGKVPPNLVN 324 >gi|118431906|ref|NP_148658.2| glyoxylate reductase [Aeropyrum pernix K1] Length = 333 Score = 77.0 bits (188), Expect = 7e-16 Identities = 75/293 (25%), Positives = 123/293 (41%), Gaps = 30/293 (10%) Query: 33 DAILVRSADMHQMEIPSSVLA-------IARAGAGVNNIPVERCTERGIVVFNTPGANAN 85 DA +V QM I + + A + + G ++I VE C G+ V N GANA Sbjct: 49 DADVVIGDYTFQMRIDAEMCAAMERVRLVQQPSTGYDHIDVEACARHGVPVANAGGANAV 108 Query: 86 SVKELVIAGLLIASRKIIRAVEWVRSIADEGDRVSELVEKEKSRFTGPEXXXXXXXXXXX 145 SV E I L ++++ A R G L+E G Sbjct: 109 SVAEYTIMAALALLKRLLYAH---RETVAGGWPQWRLMEMGTFDLQGKTWGIIGLGRIGR 165 Query: 146 XXXXXMVANAAVSLEMEVIGYDPYISVEAAWGLSSKVQRAETLEKLIREADYITLHVPLN 205 VA E+ + +D +A L + + +L +L+RE+D +++HVPL Sbjct: 166 E-----VAKRLRPFEVRTVYFDKVRMEDAERELGVEYR---SLSRLLRESDVVSIHVPLT 217 Query: 206 DDTRGMLNYEKFRMMKRGVKILNFARGGLVNNRDILRAIEE-----GIVDRYVTDFPEAE 260 +TRGM+ + RMMK ++N +RG +V+ + RA+ E VD Y + P + Sbjct: 218 SETRGMIGEGELRMMKPTAVLINPSRGEIVDEEALARAVRERWIAGAAVDVYSREPPPPD 277 Query: 261 --LLRCE-----NVIPIPHLGASTPEAEENCAIMAVQQLRDFLERGNIRNSVN 306 L+R N+I PH+ + +A +++ + L+ G VN Sbjct: 278 HPLIRAAGEADVNLILTPHIAGANTDARSRIIQFSIENIVRVLKGGKPEAVVN 330 >gi|118431387|ref|NP_147833.2| glyoxylate reductase [Aeropyrum pernix K1] Length = 347 Score = 60.1 bits (144), Expect = 9e-11 Identities = 72/295 (24%), Positives = 116/295 (39%), Gaps = 43/295 (14%) Query: 29 FTHPDAILVRSADMHQMEIPSSVLAIARAGAGVNNIPVERCTERGIVVFNTPGANANSVK 88 FT DA L+R ++ + +S G +++ VE G+ V N P +V Sbjct: 53 FTPVDAGLLRDKGCLELIVLTST--------GFDHVDVEAAAGVGVCVANQPEVITEAVA 104 Query: 89 ELVIAGLLIASRKIIRAVEWVRSIADEG---DRVSELVEKEKSRFTGPEXXXXXXXXXXX 145 E V+A +L A R ++ + A EG LV G Sbjct: 105 EYVVAAVLAALRGVVAGHMYTPRWAREGWPSHLAGFLVRGRSVGLLGAGRI--------- 155 Query: 146 XXXXXMVANAAVSLEMEVIGYDP--YISVEAAWGLSSKVQRAETLE--KLIREADYITLH 201 +V+ ++ +G P Y S GL + V A+ LE +L + + Sbjct: 156 --------GQSVAFKLAALGAGPFYYYSRSRKPGLEA-VLGAKRLEPRELFSRSMILVNS 206 Query: 202 VPLNDDTRGMLNYEKFRMMKRGVKILNFARGGLVNNRDILRAIEEGIVDRYVTDF----- 256 +PL +TRG++ R++ RG +N RGG + E +V D Sbjct: 207 LPLTGETRGLVTAGLLRLLPRGAVYVNVGRGGTEEPGAVEAVASEREDLYFVLDVHPEEP 266 Query: 257 --PEAELLRCEN---VIPIPHLGASTPEAEENCAIMAVQQLRDFLERGNIRNSVN 306 P + +R V+ PH+ S+ E+ ++A Q RD+LERG + N VN Sbjct: 267 LPPSSGRMRLHGNPRVVMTPHIAGSSRESMTATRLLAAMQARDYLERGCVWNPVN 321 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 364,182 Number of Sequences: 1700 Number of extensions: 14800 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 6 length of query: 397 length of database: 492,079 effective HSP length: 79 effective length of query: 318 effective length of database: 357,779 effective search space: 113773722 effective search space used: 113773722 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717867|ref|YP_003873399.1| hypothetical protein STHERM_c01500 [Spirochaeta thermophila DSM 6192] (393 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 414,731 Number of Sequences: 1700 Number of extensions: 18872 Number of successful extensions: 71 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71 Number of HSP's gapped (non-prelim): 0 length of query: 393 length of database: 492,079 effective HSP length: 79 effective length of query: 314 effective length of database: 357,779 effective search space: 112342606 effective search space used: 112342606 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717868|ref|YP_003873400.1| redox-sensing transcriptional repressor rex [Spirochaeta thermophila DSM 6192] (229 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 257,664 Number of Sequences: 1700 Number of extensions: 12320 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 0 length of query: 229 length of database: 492,079 effective HSP length: 74 effective length of query: 155 effective length of database: 366,279 effective search space: 56773245 effective search space used: 56773245 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717869|ref|YP_003873401.1| hypothetical protein STHERM_c01520 [Spirochaeta thermophila DSM 6192] (2835 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.132 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,908,284 Number of Sequences: 1700 Number of extensions: 132900 Number of successful extensions: 264 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 264 Number of HSP's gapped (non-prelim): 0 length of query: 2835 length of database: 492,079 effective HSP length: 94 effective length of query: 2741 effective length of database: 332,279 effective search space: 910776739 effective search space used: 910776739 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 100 (43.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717870|ref|YP_003873402.1| hypothetical protein STHERM_c01530 [Spirochaeta thermophila DSM 6192] (332 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 372,380 Number of Sequences: 1700 Number of extensions: 20827 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 0 length of query: 332 length of database: 492,079 effective HSP length: 77 effective length of query: 255 effective length of database: 361,179 effective search space: 92100645 effective search space used: 92100645 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717871|ref|YP_003873403.1| BNR repeat-containing protein [Spirochaeta thermophila DSM 6192] (1621 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,716,891 Number of Sequences: 1700 Number of extensions: 82344 Number of successful extensions: 180 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 180 Number of HSP's gapped (non-prelim): 0 length of query: 1621 length of database: 492,079 effective HSP length: 90 effective length of query: 1531 effective length of database: 339,079 effective search space: 519129949 effective search space used: 519129949 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 98 (42.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717872|ref|YP_003873404.1| hypothetical protein STHERM_c01550 [Spirochaeta thermophila DSM 6192] (327 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.134 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 292,704 Number of Sequences: 1700 Number of extensions: 11474 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 327 length of database: 492,079 effective HSP length: 77 effective length of query: 250 effective length of database: 361,179 effective search space: 90294750 effective search space used: 90294750 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717873|ref|YP_003873405.1| hypothetical protein STHERM_c01560 [Spirochaeta thermophila DSM 6192] (236 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431106|ref|NP_147324.2| hypothetical protein APE_0555.1 [A... 93 7e-21 >gi|118431106|ref|NP_147324.2| hypothetical protein APE_0555.1 [Aeropyrum pernix K1] Length = 243 Score = 92.8 bits (229), Expect = 7e-21 Identities = 66/158 (41%), Positives = 83/158 (52%), Gaps = 7/158 (4%) Query: 2 VRVILVEPEGAENVGMVARAMANMGHERLVLVRPACDHLSPPARRYAVHAESILEGARVC 61 +R++LVE EGA N+G VAR N + + LV P A+RYA A L+ ARV Sbjct: 4 LRIVLVETEGAVNLGFVARLAENFEADEIYLVSPRAS--LEEAKRYAARAAWRLDAARVV 61 Query: 62 ETLAEALDGVDLRVAVTRRHGQYRMPDLYLPEFPAFLAEF---TGRDVALVFGRERTGLT 118 L EAL GV + T H R L P P AE T VA+VFGRE GLT Sbjct: 62 SNLEEALRGVSASLC-TSSHMSDR-DALRAPLAPWEAAEVLAATPGTVAIVFGRESVGLT 119 Query: 119 SEEVQACDLILTIPSSGACPSLNLAQAVMVVLYELMRA 156 E+ C L +IP+S PSLNL+ A + LYE+ +A Sbjct: 120 RGEIALCSLYSSIPASPRYPSLNLSNAAAIYLYEVYKA 157 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 221,858 Number of Sequences: 1700 Number of extensions: 9352 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 1 length of query: 236 length of database: 492,079 effective HSP length: 74 effective length of query: 162 effective length of database: 366,279 effective search space: 59337198 effective search space used: 59337198 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717874|ref|YP_003873406.1| aspartyl-tRNA synthetase [Spirochaeta thermophila DSM 6192] (622 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431776|ref|NP_148450.2| aspartyl-tRNA synthetase [Aeropyru... 101 6e-23 >gi|118431776|ref|NP_148450.2| aspartyl-tRNA synthetase [Aeropyrum pernix K1] Length = 442 Score = 101 bits (251), Expect = 6e-23 Identities = 78/248 (31%), Positives = 119/248 (47%), Gaps = 14/248 (5%) Query: 50 GKEVILNGWVHRKRDHGGIHFINLRDRYGITQVVVDE-ESPEEVRRLVEALKYEYCIAVK 108 G V + GW +R RD G + FI +RDR G+ Q V ESPE+ R E LK E + V+ Sbjct: 19 GGRVRVCGWAYRIRDLGRLKFILVRDRSGVIQATVKRGESPEDALRAAEDLKLESVVCVE 78 Query: 109 GVVRLRPETMRNPQMPTGDIEVLATGIRPLSASEILPFPIDDAIDAXXXXXXXXXXXXXX 168 G +R P T ++ +EVL+T + P LP ++ + A Sbjct: 79 GELRQAP-TREGVEVKVERLEVLSTPVEP------LPLEVEGSEKASLPTRLKYRWLDIR 131 Query: 169 XXXMQRNLTLRHLVAWHAREYLVGKGFYEIETPTFIRS-TPEGARDFLVPARLHPGRFYA 227 + L +VA R+Y +GF EI TP + + T GA F V ++ + Sbjct: 132 NPMVSAIFELEAMVAKVFRDYYWSQGFVEIFTPKIVAAGTESGAEVFPV---VYFDKTAF 188 Query: 228 LPQSPQLFKQLLMVAGFDKYFQIARCYRDEDARGDRQ-PEFTQIDMEMSFV-TQDDVLAE 285 L QSPQ +KQ ++AG ++ F+I +R E R E+ +D+E+ F+ + +DV+ Sbjct: 189 LAQSPQFYKQFAVIAGLERVFEIGPVFRAEPHHTSRHLNEYHSLDIEVGFIESYNDVMNY 248 Query: 286 TEGLMAHI 293 EG M I Sbjct: 249 VEGFMRAI 256 Score = 50.4 bits (119), Expect = 1e-07 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 4/91 (4%) Query: 506 AYDLVCNGYELASGSIRIHDPELQRRIFKVVGFSEEEAASRFGFLTTAFKYGPPPHGGIA 565 ++DL+ G E+ +G R H + G E F F FK+G PPHGG Sbjct: 356 SFDLLYRGLEIVTGGQREHRYHRLLENLRDKGLDAES----FQFYLDFFKHGAPPHGGAG 411 Query: 566 PGLDRLVMIMAGEETIREVIAFPKTAAGLSP 596 GL+R+VM E IRE P+ ++P Sbjct: 412 MGLERIVMQTLKLENIREARMLPRDTERITP 442 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 686,862 Number of Sequences: 1700 Number of extensions: 32912 Number of successful extensions: 115 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110 Number of HSP's gapped (non-prelim): 2 length of query: 622 length of database: 492,079 effective HSP length: 82 effective length of query: 540 effective length of database: 352,679 effective search space: 190446660 effective search space used: 190446660 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717875|ref|YP_003873407.1| cation efflux family protein [Spirochaeta thermophila DSM 6192] (323 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.135 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 285,937 Number of Sequences: 1700 Number of extensions: 10151 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 323 length of database: 492,079 effective HSP length: 77 effective length of query: 246 effective length of database: 361,179 effective search space: 88850034 effective search space used: 88850034 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717876|ref|YP_003873408.1| hypothetical protein STHERM_c01590 [Spirochaeta thermophila DSM 6192] (137 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.139 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 118,071 Number of Sequences: 1700 Number of extensions: 4531 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 137 length of database: 492,079 effective HSP length: 68 effective length of query: 69 effective length of database: 376,479 effective search space: 25977051 effective search space used: 25977051 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717877|ref|YP_003873409.1| hypothetical protein STHERM_c01600 [Spirochaeta thermophila DSM 6192] (226 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 211,972 Number of Sequences: 1700 Number of extensions: 8939 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 226 length of database: 492,079 effective HSP length: 74 effective length of query: 152 effective length of database: 366,279 effective search space: 55674408 effective search space used: 55674408 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717878|ref|YP_003873410.1| hypothetical protein STHERM_c01610 [Spirochaeta thermophila DSM 6192] (94 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.138 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,573 Number of Sequences: 1700 Number of extensions: 2327 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 94 length of database: 492,079 effective HSP length: 62 effective length of query: 32 effective length of database: 386,679 effective search space: 12373728 effective search space used: 12373728 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717879|ref|YP_003873411.1| hypothetical protein STHERM_c01620 [Spirochaeta thermophila DSM 6192] (379 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 287,504 Number of Sequences: 1700 Number of extensions: 9620 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 379 length of database: 492,079 effective HSP length: 78 effective length of query: 301 effective length of database: 359,479 effective search space: 108203179 effective search space used: 108203179 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717880|ref|YP_003873412.1| RNA methyltransferase, TrmH family [Spirochaeta thermophila DSM 6192] (265 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 303,187 Number of Sequences: 1700 Number of extensions: 15357 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 265 length of database: 492,079 effective HSP length: 75 effective length of query: 190 effective length of database: 364,579 effective search space: 69270010 effective search space used: 69270010 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717881|ref|YP_003873413.1| hypothetical protein STHERM_c01640 [Spirochaeta thermophila DSM 6192] (138 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 136,014 Number of Sequences: 1700 Number of extensions: 5520 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 138 length of database: 492,079 effective HSP length: 68 effective length of query: 70 effective length of database: 376,479 effective search space: 26353530 effective search space used: 26353530 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717882|ref|YP_003873414.1| hypothetical protein STHERM_c01650 [Spirochaeta thermophila DSM 6192] (77 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,885 Number of Sequences: 1700 Number of extensions: 2379 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 77 length of database: 492,079 effective HSP length: 47 effective length of query: 30 effective length of database: 412,179 effective search space: 12365370 effective search space used: 12365370 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717883|ref|YP_003873415.1| HD domain-containing protein [Spirochaeta thermophila DSM 6192] (497 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 453,978 Number of Sequences: 1700 Number of extensions: 20004 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 497 length of database: 492,079 effective HSP length: 81 effective length of query: 416 effective length of database: 354,379 effective search space: 147421664 effective search space used: 147421664 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717884|ref|YP_003873416.1| hypothetical protein STHERM_c01670 [Spirochaeta thermophila DSM 6192] (797 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 816,096 Number of Sequences: 1700 Number of extensions: 38056 Number of successful extensions: 172 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 172 Number of HSP's gapped (non-prelim): 0 length of query: 797 length of database: 492,079 effective HSP length: 84 effective length of query: 713 effective length of database: 349,279 effective search space: 249035927 effective search space used: 249035927 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717885|ref|YP_003873417.1| hypothetical protein STHERM_c01680 [Spirochaeta thermophila DSM 6192] (214 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600828|ref|NP_147351.1| hypothetical protein APE_0600 [Aero... 43 7e-06 >gi|14600828|ref|NP_147351.1| hypothetical protein APE_0600 [Aeropyrum pernix K1] Length = 175 Score = 42.7 bits (99), Expect = 7e-06 Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 2/101 (1%) Query: 51 AHGIPQEGEICFPGGLVEPHDPSPLHTALRETHEELGIPGSRI-PHIRYAGAFLSASGRL 109 A G P ++ PGG V+ + +PL A RE EE IP + + P Y +GR Sbjct: 30 APGSPWACDLALPGGGVKRGE-APLEAAAREAWEEAWIPPAAVRPLASYCCEKTLTAGRR 88 Query: 110 IHVFPALVPSWDEAHPSPDEVSHLFTLPLSWLRTTPPRIHH 150 IHV A + E P+ +EV PL P + H Sbjct: 89 IHVVIAALQGPAEPRPAEEEVDAAIWAPLHIASAKPGPVRH 129 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.143 0.491 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 275,294 Number of Sequences: 1700 Number of extensions: 13625 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 1 length of query: 214 length of database: 492,079 effective HSP length: 73 effective length of query: 141 effective length of database: 367,979 effective search space: 51885039 effective search space used: 51885039 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717886|ref|YP_003873418.1| hypothetical protein STHERM_c01690 [Spirochaeta thermophila DSM 6192] (175 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601153|ref|NP_147682.1| NADH dehydrogenase [Aeropyrum perni... 47 4e-07 gi|118430871|ref|NP_146950.2| NADH dehydrogenase [Aeropyrum pern... 39 6e-05 >gi|14601153|ref|NP_147682.1| NADH dehydrogenase [Aeropyrum pernix K1] Length = 249 Score = 46.6 bits (109), Expect = 4e-07 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 18/161 (11%) Query: 5 IFAR-RSIRRYRSDPVPDGVLKEVLRAGMAAPSSWNGRPWAFVVIDDPAALEEIARRHGY 63 +FAR RSIR+Y P+P+ + +L A AP+ W+ V + D IA G Sbjct: 16 VFARHRSIRKYVKKPLPEEHVSLLLEAARRAPTDATLHLWSAVRVVDDGVRRRIADAIGQ 75 Query: 64 AAMCREAPVAVLVCGL----------PEGMKEPD-----FLPQDLSAATENVLIAATELG 108 + + + E + D F D A EN+ + A LG Sbjct: 76 EHVYEAGEFFIFLADFYRLKRLLEYRGEELGRVDRALLVFAAIDAGLAAENMAVMAEALG 135 Query: 109 LGSVWVGLFPHEDRMGVLREVCGLPPEVVPFSLVVLGYPAE 149 G+ ++G ++ ++ E+ LP + P + +GYPAE Sbjct: 136 YGTCFIG--GVQNAAELIIELLALPEKTYPLFGLTIGYPAE 174 >gi|118430871|ref|NP_146950.2| NADH dehydrogenase [Aeropyrum pernix K1] Length = 237 Score = 39.3 bits (90), Expect = 6e-05 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 19/159 (11%) Query: 5 IFARRSIRRYRSDPVPDGVLKEVLRAGMAAPSSWNGRPWAFVVIDDPAALEEIARRHGYA 64 I RS+R + ++P+P ++++L A S WN +P V+ D ++ Sbjct: 11 ISRHRSVRSFSTEPIPQEDIRKILEAARRHVSPWNIQPVHVTVVTDSKLKSRLSDALWGQ 70 Query: 65 AMCREAPV-------------AVLVCGLPEGMKEP---DFLPQDLSAATENVLIAATELG 108 +EAPV ++ + GL +EP + L +SA+ A Sbjct: 71 EQIKEAPVFFVFSVDYAKVLESIKLLGLE--AREPGLTELLQGYISASVALAWSIAVAED 128 Query: 109 LGSVWVGLFPHEDRMGVLREVCGLPPEVVPFSLVVLGYP 147 LG V V + + ++ GLP VVP + +++G P Sbjct: 129 LGYV-VNIIAAYGNPCEVADILGLPSYVVPVAGLLVGKP 166 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 219,971 Number of Sequences: 1700 Number of extensions: 10550 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 2 length of query: 175 length of database: 492,079 effective HSP length: 71 effective length of query: 104 effective length of database: 371,379 effective search space: 38623416 effective search space used: 38623416 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717887|ref|YP_003873419.1| serine hydroxymethyltransferase [Spirochaeta thermophila DSM 6192] (506 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431663|ref|NP_148290.2| serine hydroxymethyltransferase [A... 153 1e-38 >gi|118431663|ref|NP_148290.2| serine hydroxymethyltransferase [Aeropyrum pernix K1] Length = 439 Score = 153 bits (386), Expect = 1e-38 Identities = 126/401 (31%), Positives = 183/401 (45%), Gaps = 41/401 (10%) Query: 55 RRNIKLIASENYSSLATQFAMANLFTDKYAEGYPGHRFYAGCDNVDEVESLACEEAKALF 114 R +I LIASEN SL A + F +YAEG P R+Y G +DE+E L E ++ Sbjct: 29 RESINLIASENVMSLTALKAYLSDFMFRYAEGKPFKRYYQGTRYIDELEVLTGELMGSMM 88 Query: 115 GAQHAYVQPHSGADANLVAFWAVLQWKVQAPALEKLGKKNLYDLSREEWEALRKELGNQR 174 G ++P SG AN F + E G++ Sbjct: 89 GTNLVELRPVSGTIANASVFRVLA------------------------------EPGDKA 118 Query: 175 LLGLDYYSGGHLTHGYRYNVSAQMFEAYSYGVNPETGLLDYDEIARLAREIRPLILLAGY 234 ++ +G H++H + A E S + E +D D+ +L E++P + G Sbjct: 119 VIA-PVQAGAHVSHTKFGTLGALGIEQVSMPYDEENMNVDVDKAVKLIEEVKPRFAVLGG 177 Query: 235 SAYPRKIDFARLREIADEVGAVLMVDMAHFAGLVAGGVFEGPYNPVPHAHIVTSTTHKTL 294 S Y + E VG L+ D AH GL+ GG + P A VT +THKT Sbjct: 178 SVYIFPHPTREIAEAIHSVGGKLIYDAAHVLGLIMGGAWPNPLE--RGADAVTGSTHKTF 235 Query: 295 RGPRGGIVLCVKE-LAEFVDKGC-PMVLGGPLPHVIAAKAVALREARSPAFREYAHKIVE 352 GP+GG V E L + V K P + H I A A+ E + R+YA ++ Sbjct: 236 PGPQGGAVFFRDEQLYKKVSKTIFPWWVSNHHLHRIPATAITAVEMKLYG-RDYASQVTS 294 Query: 353 NAQALAAFLQEEGITVA---TGGTDNHLMLIDVRPFGITGRQAEAAVRECSITLNRNALP 409 NA+ LA L EG+ V G T +H +++DVR G G + + + E +I +N+N LP Sbjct: 295 NARKLAEALAAEGLKVIGEHLGYTRSHQVVVDVRDLG-GGAKCASLLEESNIIVNKNLLP 353 Query: 410 YD-PNGPWYTSGLRIGTPAVTTLGMGREEMREIARIFKLIL 449 +D P SG+RIG VT LGM EM EIA++ + +L Sbjct: 354 WDPPEAVKDPSGIRIGVQEVTRLGMKHGEMEEIAKLIRKVL 394 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 546,501 Number of Sequences: 1700 Number of extensions: 25711 Number of successful extensions: 84 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78 Number of HSP's gapped (non-prelim): 2 length of query: 506 length of database: 492,079 effective HSP length: 81 effective length of query: 425 effective length of database: 354,379 effective search space: 150611075 effective search space used: 150611075 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717888|ref|YP_003873420.1| hypothetical protein STHERM_c01710 [Spirochaeta thermophila DSM 6192] (95 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,701 Number of Sequences: 1700 Number of extensions: 1840 Number of successful extensions: 2 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 95 length of database: 492,079 effective HSP length: 63 effective length of query: 32 effective length of database: 384,979 effective search space: 12319328 effective search space used: 12319328 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717889|ref|YP_003873421.1| hypothetical protein STHERM_c01720 [Spirochaeta thermophila DSM 6192] (1505 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,748,133 Number of Sequences: 1700 Number of extensions: 88478 Number of successful extensions: 164 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 164 Number of HSP's gapped (non-prelim): 0 length of query: 1505 length of database: 492,079 effective HSP length: 89 effective length of query: 1416 effective length of database: 340,779 effective search space: 482543064 effective search space used: 482543064 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 98 (42.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717890|ref|YP_003873422.1| hypothetical protein STHERM_c01730 [Spirochaeta thermophila DSM 6192] (1562 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.134 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,697,236 Number of Sequences: 1700 Number of extensions: 80935 Number of successful extensions: 153 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 153 Number of HSP's gapped (non-prelim): 0 length of query: 1562 length of database: 492,079 effective HSP length: 89 effective length of query: 1473 effective length of database: 340,779 effective search space: 501967467 effective search space used: 501967467 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 98 (42.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717891|ref|YP_003873423.1| hypothetical protein STHERM_c01760 [Spirochaeta thermophila DSM 6192] (240 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 266,760 Number of Sequences: 1700 Number of extensions: 12542 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 0 length of query: 240 length of database: 492,079 effective HSP length: 74 effective length of query: 166 effective length of database: 366,279 effective search space: 60802314 effective search space used: 60802314 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717892|ref|YP_003873424.1| hypothetical protein STHERM_c01770 [Spirochaeta thermophila DSM 6192] (964 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 851,395 Number of Sequences: 1700 Number of extensions: 36310 Number of successful extensions: 126 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 126 Number of HSP's gapped (non-prelim): 0 length of query: 964 length of database: 492,079 effective HSP length: 86 effective length of query: 878 effective length of database: 345,879 effective search space: 303681762 effective search space used: 303681762 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717893|ref|YP_003873425.1| branched-chain-amino-acid aminotransferase [Spirochaeta thermophila DSM 6192] (364 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 385,210 Number of Sequences: 1700 Number of extensions: 17313 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 364 length of database: 492,079 effective HSP length: 78 effective length of query: 286 effective length of database: 359,479 effective search space: 102810994 effective search space used: 102810994 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717894|ref|YP_003873426.1| mannose-1-phosphate guanylyltransferase [Spirochaeta thermophila DSM 6192] (352 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 391,425 Number of Sequences: 1700 Number of extensions: 18501 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 0 length of query: 352 length of database: 492,079 effective HSP length: 78 effective length of query: 274 effective length of database: 359,479 effective search space: 98497246 effective search space used: 98497246 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717895|ref|YP_003873427.1| hypothetical protein STHERM_c01800 [Spirochaeta thermophila DSM 6192] (458 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.309 0.130 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 402,562 Number of Sequences: 1700 Number of extensions: 17357 Number of successful extensions: 27 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 0 length of query: 458 length of database: 492,079 effective HSP length: 80 effective length of query: 378 effective length of database: 356,079 effective search space: 134597862 effective search space used: 134597862 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717896|ref|YP_003873428.1| anthranilate synthase component 1 [Spirochaeta thermophila DSM 6192] (472 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431922|ref|NP_148690.2| anthranilate synthase component I ... 179 2e-46 >gi|118431922|ref|NP_148690.2| anthranilate synthase component I [Aeropyrum pernix K1] Length = 438 Score = 179 bits (453), Expect = 2e-46 Identities = 106/255 (41%), Positives = 139/255 (54%), Gaps = 3/255 (1%) Query: 212 DHIVRGNLLQAVPSRRKTLRTAVPAFEAYRILRSVNPSPYLFFLDFGSFQLFGSSPEVHV 271 + I G Q V SR + R F AY L NPSPYL++ G + GSSPE+ V Sbjct: 182 ERIRAGEAFQVVLSRVERYRVWGSLFSAYERLADANPSPYLYYARLGGRVIIGSSPELLV 241 Query: 272 KVKDGEAVIRPIAGTRRRGXXXXXXXXXXXXXXXXXXXXXXHLMLVDLARNDLGRVCEPA 331 K++ G PIAGTR RG H+MLVDLARND+ RV P Sbjct: 242 KLEAGRVETHPIAGTRPRGSTPIEDIELEVELLNDEKERAEHVMLVDLARNDITRVSIPG 301 Query: 332 SVHVADLMVVERYSHVMHIVSEVRGRLREGKTGIDALRASFPAGTVTGAPKIKAMEVVSG 391 +V V M +ERY VMHIVS V G R T ++AL+A PAGTV+GAPK +AME+++ Sbjct: 302 TVQVTSFMDIERYETVMHIVSRVEGVTRPSTTFVEALKALHPAGTVSGAPKPRAMEIIAE 361 Query: 392 LEPVARSFYAGVVGYLEPDGSLDTCITIRSG--LKKGDMLFLQAGAGVVYDSRPXXXXXX 449 LE AR YAG +G + + + I +RS L G+ L +AGAG+VYDS+P Sbjct: 362 LEEEARGPYAGAIG-VAGSSAGEAAIVLRSAWLLDDGETLEARAGAGIVYDSKPEREYME 420 Query: 450 XXXKLAALMHAIGLE 464 KL +L A+G++ Sbjct: 421 TVQKLGSLKRALGVD 435 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 477,228 Number of Sequences: 1700 Number of extensions: 22188 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 1 length of query: 472 length of database: 492,079 effective HSP length: 80 effective length of query: 392 effective length of database: 356,079 effective search space: 139582968 effective search space used: 139582968 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717897|ref|YP_003873429.1| anthranilate synthase component II [Spirochaeta thermophila DSM 6192] (532 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602141|ref|NP_148689.1| anthranilate phosphoribosyltransfer... 183 1e-47 gi|14602143|ref|NP_148691.1| anthranilate synthase component II ... 161 3e-41 gi|14602074|ref|NP_148620.1| GMP synthase [Aeropyrum pernix K1] 54 7e-09 >gi|14602141|ref|NP_148689.1| anthranilate phosphoribosyltransferase [Aeropyrum pernix K1] Length = 345 Score = 183 bits (464), Expect = 1e-47 Identities = 116/294 (39%), Positives = 147/294 (50%), Gaps = 2/294 (0%) Query: 231 AGVLVALNAKGFAPQEVAGCAAVLRRKAVPFPARGE-FXXXXXXXXXXXXXFNISSCAAL 289 A L AL +G P EV G A LR +AV GE N S+ AAL Sbjct: 45 AAALAALRVRGEQPGEVVGFARALRDRAVRVEYGGEVLLDTAGTGGDGLSTLNASTAAAL 104 Query: 290 VAAACGVPVAKHGNRAVSSKSGSADFYGALGIPVDLGPDEAARMLREEGFVFLFAPRYHG 349 VAA+ GVP AKHGNR+ SSKSGSAD LG ++ D A RML GF FL+AP YH Sbjct: 105 VAASLGVPTAKHGNRSFSSKSGSADVMEMLGYNINHRADRAVRMLSTLGFTFLYAPNYHP 164 Query: 350 AMKYAAGPRRDLGIKTIMNFVGPLSNPAGAKYQLVGVFSRDYLELMAEAALQLGVRRVMA 409 AMK RR L +TI N VGPL+NPA Q++GV R + ++A AA LG V+ Sbjct: 165 AMKAVVPVRRKLATRTIFNLVGPLANPAFNNVQVIGVARRSLMPVIASAASLLGYDAVLV 224 Query: 410 VHGEDGQDEVSVTGRTFYVYLDAEGRREEGVFEPEELGVGRHPLEEVLGGTPEENVEEAR 469 VHG+ G DEVSVTG T + + GR EE PE+LG+ L+E+ E+ E R Sbjct: 225 VHGDPGMDEVSVTGETKILEV-RRGRIEEYSITPEDLGLPITGLKELRVANAVESAERVR 283 Query: 470 RLFAGEGRPAIRDXXXXXXXXXXXXXXXXXSPQEGVRMALDVLSSGRVRELVER 523 R +G GR + + A+ + GR L+E+ Sbjct: 284 RALSGRGRRSDEAFIAANAAAALYVAGFEKDLKGAAEAAVQAIREGRPAALLEK 337 >gi|14602143|ref|NP_148691.1| anthranilate synthase component II [Aeropyrum pernix K1] Length = 196 Score = 161 bits (408), Expect = 3e-41 Identities = 85/188 (45%), Positives = 119/188 (63%), Gaps = 7/188 (3%) Query: 3 LLIDNYDSFTYNIYQYLCELTGEPVRVVRNDEITVEEVEEFRPEGIIISPGPGRP---ED 59 L+IDNYDSF YNI L L E + V+RNDE++ + +P+ I+ISPGPG P D Sbjct: 7 LVIDNYDSFVYNIVDVLARLGAESI-VLRNDEVSPKIARRLKPDRIVISPGPGNPLNPRD 65 Query: 60 AGISLEVIRRFAGRVPILGVCLGHQCIGQAFGARIVQAKRIMHGKTDTVHLDGRGIFRML 119 +G + +++R A P+LG+CLGHQ IG +GA++ +A + MHGKT V G ++R + Sbjct: 66 SGRAPDIVREMARNTPVLGICLGHQIIGLLYGAKVERAPKPMHGKTSPVEHYGHKLYRGV 125 Query: 120 PRTLTCVRYHSLVIDEESLPPEFEVTARSSDGE-IMGIRHKEWVLEGVQFHPESIATEEG 178 PR +RYHSL + + P E +V + S D + IMGI H E + GVQFHPESI T G Sbjct: 126 PRVFQAMRYHSLAVYDP--PEELQVDSVSLDDKVIMGISHAELPVYGVQFHPESIGTPHG 183 Query: 179 KRMLANFL 186 + ++ NFL Sbjct: 184 EVIVRNFL 191 >gi|14602074|ref|NP_148620.1| GMP synthase [Aeropyrum pernix K1] Length = 512 Score = 54.3 bits (129), Expect = 7e-09 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 17/160 (10%) Query: 44 RPEGIIISPGPG------RPEDAGISLEVIRRFAGRVPILGVCLGHQCIGQAFGARIVQA 97 R G+++S GPG E A + L++ + P+LG+C GHQ + + G + ++ Sbjct: 51 RAAGVVLSGGPGSVWGSRHDEAAAMVLQLGK------PVLGICYGHQLLAKVLGGEVGRS 104 Query: 98 KRIMHGKTDTVHLDGRGIFRMLP-RTLTCVRYHSLVIDEESLPPEFEVTARSSDGEIMGI 156 G T+ LD + LP R + ++ V+ P E +V AR+ + + Sbjct: 105 PLPEFGPTEVEVLDYGILLNGLPSRFKVWMSHYDAVLRP---PGEAKVLARTPGSPVAAM 161 Query: 157 RHKEWVLEGVQFHPESIATEEGKRMLANFLSYKREPFDYR 196 V GVQ+HPE T+ G+ +L N+LS P +R Sbjct: 162 ELWGRVF-GVQWHPEVRHTQYGREVLDNWLSLVGAPRTWR 200 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 551,631 Number of Sequences: 1700 Number of extensions: 25701 Number of successful extensions: 105 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 97 Number of HSP's gapped (non-prelim): 4 length of query: 532 length of database: 492,079 effective HSP length: 81 effective length of query: 451 effective length of database: 354,379 effective search space: 159824929 effective search space used: 159824929 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717898|ref|YP_003873430.1| anthranilate synthase component [Spirochaeta thermophila DSM 6192] (480 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602137|ref|NP_148685.1| indole-3-glycerol phosphate synthas... 86 3e-18 >gi|14602137|ref|NP_148685.1| indole-3-glycerol phosphate synthase [Aeropyrum pernix K1] Length = 261 Score = 85.5 bits (210), Expect = 3e-18 Identities = 70/204 (34%), Positives = 95/204 (46%), Gaps = 18/204 (8%) Query: 49 VIAEFKRRSPSRGAICDEADPXXXXXXXXXXXXXXXSVLTEEAYFGGSLADLMRVKERFP 108 VIAE+KR SPS GAI DP SVLTE +F GS+ E P Sbjct: 51 VIAEYKRCSPSAGAI-STLDPVSYVQATRDASAAY-SVLTEPNWFCGSI-------ELIP 101 Query: 109 HLA----VLRKDFLLSEEDVEVSYRAGADAVLLIARVLPQDRLGRMLDLTGRCGMTALVE 164 + A VL KDF++SE + ++ GA A LLI L L + R G+ LVE Sbjct: 102 YFARYKPVLAKDFIVSETQIRIAACMGASAALLIMEALTPRELQELAAAASRYGVEVLVE 161 Query: 165 VHTPEDVEKVRRFEP-PLVGINARDLATFRVD----LLHPVRLRGLVDWDARVVFESGLW 219 + R P ++G+N+RDL T RVD L + R + + +V ESG+ Sbjct: 162 TPDASHAVEASRLAPGSIIGVNSRDLKTLRVDYEAMLREVSKAREQLPGEVILVAESGID 221 Query: 220 TRAHGYVAGSSGAWGVLVGEAVMR 243 + A +GA +LVG A M+ Sbjct: 222 SPDKALKAFKAGAQAILVGTAFMK 245 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.142 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 484,871 Number of Sequences: 1700 Number of extensions: 21911 Number of successful extensions: 78 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 75 Number of HSP's gapped (non-prelim): 1 length of query: 480 length of database: 492,079 effective HSP length: 80 effective length of query: 400 effective length of database: 356,079 effective search space: 142431600 effective search space used: 142431600 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717899|ref|YP_003873431.1| tryptophan synthase beta chain [Spirochaeta thermophila DSM 6192] (407 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602139|ref|NP_148687.1| tryptophan synthase subunit beta [A... 164 5e-42 gi|14601988|ref|NP_148533.1| tryptophan synthase subunit beta [A... 152 2e-38 gi|14601969|ref|NP_148514.1| threonine synthase [Aeropyrum perni... 56 2e-09 gi|118431480|ref|NP_147982.2| threonine dehydratase [Aeropyrum p... 50 1e-07 >gi|14602139|ref|NP_148687.1| tryptophan synthase subunit beta [Aeropyrum pernix K1] Length = 427 Score = 164 bits (414), Expect = 5e-42 Identities = 126/370 (34%), Positives = 182/370 (49%), Gaps = 47/370 (12%) Query: 53 VGRPTPLMYAENATRALGGS---RIYIKLEGLANTGAHKINNALGQALLAKRMGKRRIIA 109 +GRPTPL+ AE + LG RIY K E + TG+HKIN A+ QA AK G + I+ Sbjct: 69 IGRPTPLIRAEGLEKVLGVKGRVRIYYKSEAVLPTGSHKINTAIAQAYYAKLDGAKEIVT 128 Query: 110 ETGAGQHGVATASVCARLGLECTVYMGEVDMARQRPNVYLMELFGAKVVPVRSGSRTLKD 169 ETGAGQ G+A ++ A +GL+ TV+M + LME GA+V+ S L D Sbjct: 129 ETGAGQWGLAASTAAALMGLKATVFMTASSFKSKIQRRLLMEAQGARVI---SSPSKLTD 185 Query: 170 AVNEALRDWAASWE------------------DTHYLLGSALGPSPFPDMVREFQSVVGR 211 EAL ++ ++ D YL GS L + V Q+V+G Sbjct: 186 TGREALEEYGSTHPGSLGLAIAEAVEYTLESGDRRYLPGSVL------EAVLMHQTVIGL 239 Query: 212 EVVEQIREQVGEEVEALVACVGGGSNAIGFFAPFIEA-------DRPKLIGVEAGGRGN- 263 E ++Q+ EE + +VACVGGGSN GF P I A ++ + I E+ Sbjct: 240 EALDQL----PEEPDVVVACVGGGSNFGGFTYPMIGARLRGEGFEKTRFIAAESTAAPKL 295 Query: 264 GPGEHAARMSGAGVEGVVHGYKSLFLLDEDGQVLPTHSISAGLDYPGIGPQLAYLGRIGR 323 GE+ R G ++ ++ L P+H +AGL Y G+ P L+ L R+G Sbjct: 296 TRGEY--RYDGLD-SSLILPLAKMYTLGHRYTPPPSH--AAGLRYHGVSPSLSILRRLGL 350 Query: 324 IRFTTASDAEALEALKFFARHEGVVFALESAHAGAVAMKMAREGSPDKAIIVNMSGRGDK 383 + EAL ++ AR EGVV A ES+HA A+A ++AR+ + N+SG G Sbjct: 351 VEAEAIPQEEALASILLMARSEGVVPAPESSHAVALAARIARKLPDGSVVAFNLSGHGLL 410 Query: 384 DIFITAKAID 393 D+ KA++ Sbjct: 411 DLDALQKALE 420 >gi|14601988|ref|NP_148533.1| tryptophan synthase subunit beta [Aeropyrum pernix K1] Length = 449 Score = 152 bits (383), Expect = 2e-38 Identities = 128/375 (34%), Positives = 175/375 (46%), Gaps = 35/375 (9%) Query: 44 ELAEAQRHFVGRPTPLMYAENATRALGG-SRIYIKLEGLANTGAHKINNALGQALLAKRM 102 E+ EA F RPTPL+ A N RAL + IY K EG+ TG+HKIN AL QA K Sbjct: 71 EVHEAYISFARRPTPLLRAVNLERALNTPAEIYYKYEGVTPTGSHKINTALAQAYYNKLE 130 Query: 103 GKRRIIAETGAGQHGVATASVCARLGLECTVYMGEVDMARQRPNVYLMELFGAKVVPVRS 162 G R++ ETGAGQ G A ++ A G++ VYM V ++ LMEL+GA+V P S Sbjct: 131 GVERLVTETGAGQWGSALSAAGAYFGVKVRVYMVRVSYLQKPYRRTLMELYGAEVYPSPS 190 Query: 163 -----GSRTLKD----------AVNEALRDWAASWEDTHYLLGSALGPSPFPDMVREFQS 207 G + L + A++EA+ D S + Y LGS L + V Q+ Sbjct: 191 DKTEFGRKLLAENPNHPGSLGIAISEAIEDVINSGGNAKYSLGSVL------NHVLLHQT 244 Query: 208 VVGREVVEQIREQVGEEVEALVACVGGGSNAIGFFAPFIE-----ADRPKLIGVEAGGRG 262 V+G E +Q RE G + ++ VGGGSN GF PFI + + I VE + Sbjct: 245 VIGLEAEKQFRE-AGVYPDIMIGAVGGGSNFAGFTYPFIRHRLKGSSSTRFIAVEP--KA 301 Query: 263 NGPGEHAARMSGAGVEGVVHGYKSLFLLDEDGQVLPTHSISAGLDYPGIGPQLAYLGRIG 322 + G + + L QV P H + GL Y G+ P L+ L + G Sbjct: 302 SPSMTRGVYTYDYGDTAGLTPLLKMHTLGHTYQVPPIH--AGGLRYHGVAPTLSVLLKHG 359 Query: 323 RIRFTTASDAEALEALKFFARHEGVVFALESAHAGAVAMK---MAREGSPDKAIIVNMSG 379 + E A FA+ EG+V A ESAHA A+ AR+ I N+SG Sbjct: 360 IVEARAYHQREVFRAAHMFAKAEGIVPAPESAHAVKAAIDEAIKARDEGRRVVIAFNLSG 419 Query: 380 RGDKDIFITAKAIDG 394 G D+ + +DG Sbjct: 420 HGLLDLQGYREYLDG 434 >gi|14601969|ref|NP_148514.1| threonine synthase [Aeropyrum pernix K1] Length = 393 Score = 55.8 bits (133), Expect = 2e-09 Identities = 83/342 (24%), Positives = 145/342 (42%), Gaps = 56/342 (16%) Query: 57 TPLMYAENATRALGGSRIYIKLEGLANTGAHKINNALGQALLAKRMGKRRIIAETGAGQH 116 TPL+ EN +RA+G +Y KLE L TG+ K +A R ++A + G Sbjct: 59 TPLVKLENLSRAMG-VEVYGKLEFLNPTGSFKDRGMTVGVSIASSFSYRLVVAAS-TGNT 116 Query: 117 GVATASVCARLGLECTVYMGEVDMARQRPNVYLMELFGAKVVPVRSGSRTLKDAVNEALR 176 + A+ R GL + + + +A + + + GA V+ V DA Sbjct: 117 AASMAAYARRAGLNPVILIPKGGIASGK--LSQIAALGAWVLEVEGSFDDALDAAR---- 170 Query: 177 DWAASWEDTHYLLGSALGPSPFPDMVREFQSVVGREVVEQIREQVGEEVEALVACVGGGS 236 AA+ + Y L S +P+ E Q + E++E + + V+ +V VG Sbjct: 171 --AAAEKGLAYSLNSI---NPYR---LEGQKTIAFEILEDV-----DRVDHVVVPVGNAG 217 Query: 237 NAIGFFAPFIEAD-------RPKLIGVEAGGRGNGPGEHAARMSGAGVEGVVHGYKSLFL 289 N + F EA RP+++GV+A G A+ + A VE Sbjct: 218 NISAIWKGFKEAGLLGLPSMRPRMVGVQAEG--------ASPLYRAWVEK---------- 259 Query: 290 LDEDGQVLPTHSISAGLDYPGIGPQLAYLGRIGRIR-----FTTASDAEALEALKFFARH 344 +D +V +I++ + IG + + +R + SDAE L+A A + Sbjct: 260 MDSVERVRNPSTIASAIR---IGNPVNAAKALAAVRESDGLIISVSDAEILKAAATLAEN 316 Query: 345 EGVVFALESAHAGAVAMKMAREG--SPDKAIIVNMSGRGDKD 384 EG++ SA + A +K+ +G + ++++ ++G G KD Sbjct: 317 EGMLVEPASAASLAGLIKLRNQGIIASGSSVVLILTGHGLKD 358 >gi|118431480|ref|NP_147982.2| threonine dehydratase [Aeropyrum pernix K1] Length = 411 Score = 49.7 bits (117), Expect = 1e-07 Identities = 91/367 (24%), Positives = 142/367 (38%), Gaps = 61/367 (16%) Query: 36 MADPSFHAELAEAQRHFVGRP---TPLMYAENATRALGGSRIYIKLEGLANTGAHKINNA 92 +AD F L+ R +V R TPL + +R + G+ +Y+KLE L TG+ K+ Sbjct: 10 LADEIFR--LSSEARGYVARGAHVTPLDKSTTLSR-ITGAEVYLKLENLQKTGSFKVRGP 66 Query: 93 LGQALLAKRMGKRRIIAETGAGQHGVATASVCARLGLECTVYMGEVDMARQRPNVYLMEL 152 L + A G + AG H A + GL+ + M E+ V Sbjct: 67 LFKLGRALEKGSVEGVVAASAGNHAQGVAYAASFYGLKSVIVMPEL---APPAKVKATRS 123 Query: 153 FGAKVVPVRSGSRTLKDAVNEALRDWAASWEDTHYLLGSALGPSPFPDMVREFQSVVGRE 212 +GA+VV V+EA + E+ Y+L PF D + + G Sbjct: 124 YGAEVV-------LHGRVVDEAFKLAEKIAEERGYML-----VHPFDDP----EIMAGNG 167 Query: 213 VVEQIREQVGEEVEALVACVGGGSNAIGFFAPFIEADRP-----KLIGVEAGGRGNGPGE 267 + + G + + ++ VGGG G + + R K+IGVEA E Sbjct: 168 TIAWEAYEQGGKFDTVIVPVGGG----GLISGVVSVVRKLMPGVKVIGVEA--------E 215 Query: 268 HAARMSGAGVEGVVHGYKSLFLLDEDGQVLPTHSISAGL--DYPGIGPQLAYLGRIGRIR 325 A + + EG + +V THS++ GL PG +L Y + Sbjct: 216 AAPKFVESFKEG------------KPIEVEVTHSLADGLVTKKPG---RLTYPIVKHLVD 260 Query: 326 FTTASDAEALEALKFFARHEGVVFALESAHAGAVAMKMAREGSPDKAIIVNMSGRGDKDI 385 A D + + + + A E A A VA +AR P +V +SG G+ D+ Sbjct: 261 KVVAVDEHEIASAMYLLLERSKILA-EGAGAAGVAALLARVVKPKGKTLVIVSG-GNADL 318 Query: 386 FITAKAI 392 K I Sbjct: 319 TSIEKVI 325 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 446,753 Number of Sequences: 1700 Number of extensions: 22178 Number of successful extensions: 94 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 82 Number of HSP's gapped (non-prelim): 4 length of query: 407 length of database: 492,079 effective HSP length: 79 effective length of query: 328 effective length of database: 357,779 effective search space: 117351512 effective search space used: 117351512 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717900|ref|YP_003873432.1| tryptophan synthase subunit alpha [Spirochaeta thermophila DSM 6192] (257 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602140|ref|NP_148688.1| tryptophan synthase subunit alpha [... 42 1e-05 >gi|14602140|ref|NP_148688.1| tryptophan synthase subunit alpha [Aeropyrum pernix K1] Length = 252 Score = 42.4 bits (98), Expect = 1e-05 Identities = 58/233 (24%), Positives = 84/233 (36%), Gaps = 9/233 (3%) Query: 21 EVAQALVEGGAWALEVQFPFSDPTADGPAIQEACTRALEAGFTVEKGFRFLEWLKGRWPD 80 E+A L +G LE+ P P DGP I+ +A+E+G++ K E + Sbjct: 24 EIASTL-KGCVDYLELGIPTPKPLYDGPTIRLTHLKAVESGYSGPKTLSLAE-EASQEAG 81 Query: 81 LPVFLMCYGSIPVRKGVEAFVARCADLGLEGLIVPDLP---PDYDEGLYGAGARHGXXXX 137 +P +M Y + E + + G ++ PDLP P + E R G Sbjct: 82 VPYIVMAYATEQPWSFSEV-LREASRKGALSVLPPDLPFELPGHVEWYVEESRRLGMEPS 140 Query: 138 XXXIPQIRGERLSRILSLSPAYVYAALRKGITGYHTEIGEENLSLLGTLEAAGTRTLAGF 197 P+ L R L P +Y L+ TG + LAGF Sbjct: 141 LFASPKFPHRWLDRYRRLDPLLIYLGLQPA-TGVKLPLAFLRNVKTARKIVGQVYMLAGF 199 Query: 198 GIDSPEQX-XXXXXXXXXXXXGSAFVRVIASCSGSPAAPLKAKIRELLCSEEG 249 I SPE GS R+++S A L IR + SE G Sbjct: 200 SIKSPEDALRVLEAGADAVVVGSEVARLVSSGRLGEARHLACSIRAAI-SERG 251 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 266,213 Number of Sequences: 1700 Number of extensions: 11686 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 1 length of query: 257 length of database: 492,079 effective HSP length: 75 effective length of query: 182 effective length of database: 364,579 effective search space: 66353378 effective search space used: 66353378 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717901|ref|YP_003873433.1| thioredoxin [Spirochaeta thermophila DSM 6192] (106 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431901|ref|NP_148649.2| thioredoxin [Aeropyrum pernix K1] 56 2e-10 gi|118431868|ref|NP_148604.2| thioredoxin [Aeropyrum pernix K1] 46 3e-07 gi|118431808|ref|NP_148504.2| thioredoxin [Aeropyrum pernix K1] 44 7e-07 gi|14601584|ref|NP_148124.1| thioredoxin [Aeropyrum pernix K1] 44 1e-06 >gi|118431901|ref|NP_148649.2| thioredoxin [Aeropyrum pernix K1] Length = 143 Score = 56.2 bits (134), Expect = 2e-10 Identities = 28/91 (30%), Positives = 46/91 (50%) Query: 12 KEVLQADIPVLVDFWAEWCMPCRMVSPILDELAEEYAGKLKVVKVNVDEEPDLASRFGIV 71 +E+L V+ F+ C CRM+ P+ +E A Y GK VN+ P ++ GI+ Sbjct: 44 REMLDNCRVVIAFFYTPTCPYCRMLKPVFEEAARFYRGKALFAAVNLARFPFMSDALGIM 103 Query: 72 SIPTILLFKNGQVAAQQIGAAPRQVFEQMIQ 102 PTI+ F G+ A + +G P + E ++ Sbjct: 104 GTPTIIAFVRGREAGRLVGLMPPERLEAFVE 134 >gi|118431868|ref|NP_148604.2| thioredoxin [Aeropyrum pernix K1] Length = 159 Score = 45.8 bits (107), Expect = 3e-07 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 13 EVLQADIPVLVDFWAEWCMPCRMVSPILDELAEE-YAGKLKVVKVNVDEEPDLASRFGIV 71 +VL ++ F AEWC C ++ IL +A + + +V+VD LA R+G+ Sbjct: 51 KVLSQHRVAVILFTAEWCGRCILMQDILTRIASRLFRDDIVFGRVDVDRAFSLAERYGVQ 110 Query: 72 SIPTILLFKNGQVAAQQIGAAPRQVFEQMIQPHL 105 IPT L+ G+V +G+ + + I L Sbjct: 111 HIPTTLIIVEGRVVDALVGSVSEEKLLERINREL 144 >gi|118431808|ref|NP_148504.2| thioredoxin [Aeropyrum pernix K1] Length = 394 Score = 44.3 bits (103), Expect = 7e-07 Identities = 25/91 (27%), Positives = 53/91 (58%), Gaps = 4/91 (4%) Query: 4 HVKTADFEKEVLQADIPVLVDFWAEWCMPCRMVSPILDELAEE--YAG-KLKVVKVNVDE 60 ++K++ + +++A + V F +E C C+++ P+ EL E Y G +L V+K++ ++ Sbjct: 51 YLKSSSQLEGLVEASGRIAVMFSSETCPTCKVIEPVWTELCESGGYKGVRLAVIKLD-ND 109 Query: 61 EPDLASRFGIVSIPTILLFKNGQVAAQQIGA 91 D + + PT +LF+NG+ ++ +GA Sbjct: 110 TADAFLKNNVTGTPTFILFENGKELSRYVGA 140 >gi|14601584|ref|NP_148124.1| thioredoxin [Aeropyrum pernix K1] Length = 389 Score = 43.5 bits (101), Expect = 1e-06 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 9/77 (11%) Query: 21 VLVDFWAEWCMPCRMVSPILDELAEEYAGKLKVVKV------NVDEEP--DLASRFGIVS 72 VLV C+ C+ + P ++ A E G++KVVKV VD E DL +R G+ Sbjct: 69 VLVYVGQTGCLGCKKIEPAIERFATEQ-GEVKVVKVWLDTLIKVDAESTFDLLARLGVEG 127 Query: 73 IPTILLFKNGQVAAQQI 89 PT+++++NG A+ + Sbjct: 128 TPTLIVYRNGVEVARHV 144 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,537 Number of Sequences: 1700 Number of extensions: 3665 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 4 length of query: 106 length of database: 492,079 effective HSP length: 65 effective length of query: 41 effective length of database: 381,579 effective search space: 15644739 effective search space used: 15644739 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717902|ref|YP_003873434.1| hypothetical protein STHERM_c01870 [Spirochaeta thermophila DSM 6192] (334 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.137 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 373,416 Number of Sequences: 1700 Number of extensions: 17744 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 334 length of database: 492,079 effective HSP length: 77 effective length of query: 257 effective length of database: 361,179 effective search space: 92823003 effective search space used: 92823003 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717903|ref|YP_003873435.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (207 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 194,429 Number of Sequences: 1700 Number of extensions: 7777 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 207 length of database: 492,079 effective HSP length: 73 effective length of query: 134 effective length of database: 367,979 effective search space: 49309186 effective search space used: 49309186 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717904|ref|YP_003873436.1| glucosamine-fructose-6-phosphate aminotransferase [Spirochaeta thermophila DSM 6192] (607 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431362|ref|NP_147783.2| isomerizing glucosamine--fructose-... 399 e-112 >gi|118431362|ref|NP_147783.2| isomerizing glucosamine--fructose-6-phosphate aminotransferase [Aeropyrum pernix K1] Length = 617 Score = 399 bits (1025), Expect = e-112 Identities = 253/628 (40%), Positives = 353/628 (56%), Gaps = 32/628 (5%) Query: 1 MCGIIG--YCGPKPTARVLLEGLKRLEYRGYDSAGIATVRD-GALTVIKRAGKIKDL--- 54 MCGIIG + A L+ GLKRLEYRGYDS G+A + G L V K AGKI ++ Sbjct: 1 MCGIIGLAFAEGNSVAGALVRGLKRLEYRGYDSMGVAVIEPPGRLVVRKAAGKIGEVVRR 60 Query: 55 EGIVPQDLDGEYGIGHTRWATHGGVTDTNAHPHVSQNGKIAVVHNGIIENFQSLKETLEE 114 G++ L G GIGHTRWATHG D NAHPH G++AVVHNG+I N+ SL+ LE Sbjct: 61 TGVL--SLRGRVGIGHTRWATHGPPNDVNAHPHTDCGGRVAVVHNGVIRNYASLRRELEA 118 Query: 115 RGYRFVSETDSEVLAHLIEDFYEG--SLEEAVKRALSLVKGTYGLLCVHADEPQVIVGAR 172 RG+R VSETD+E++AHLIE++ S EA+ +++G+Y L +H EP + R Sbjct: 119 RGHRLVSETDTELVAHLIEEYLGRGYSFLEALSLLGRVLRGSYALALLHLGEPDKVYFLR 178 Query: 173 NGSPLVLGVGEHEMFLASDVSALLGHTRQVVYLEDNEVVRVTPEEFLTTDLRNT------ 226 SPLV+G+GE +ASD++A+L R V+ LED E ++PE R Sbjct: 179 YKSPLVVGLGEGVNAVASDITAVLDVARDVIVLEDGEFGWISPEGVAIYRPRGDGGFEPL 238 Query: 227 ---VIDKKVELITWELEEIEKGPYQHYMLKEIFEQPESIKRAMQGRIDEEYATAHLGGLN 283 ++++V+ + W E K Y H+MLKEI+EQP ++ +G I E+ A GL Sbjct: 239 PPGALEERVKRVEWTPESASKAGYPHFMLKEIYEQPRALAETFEGII-EDPALLRAAGLV 297 Query: 284 MTSRELLEVEQVVIIGAGTSYYAGMLGAYVIEQLARIPSVAELSSEIRYRNPVVRKNTLY 343 + LL I+GAGTS++AG++G Y + +LA I ++SE + P V T+ Sbjct: 298 AGAGRLL------IVGAGTSFHAGLVGHYYLSRLAGILGHPVVASEHKVYTPGVDGETVV 351 Query: 344 FAVSQSGETADTLYALRELKRKGARILGICNVVGSSIPRESDGGVYIHSGPEIAVASTKA 403 AVSQSGET DTL A+RE + +GAR++G+ NVVGS++ RE+D +Y+ +GPEI VA+TK Sbjct: 352 VAVSQSGETYDTLEAVREWRGRGARVIGVTNVVGSALDREADVTLYLRAGPEIGVAATKT 411 Query: 404 FTSQVTAFYLFALLMA--RMRHLSYEEGLLFIXXXXXXXXXXXXXXXKAPEIKALARKYA 461 F +Q ++ A R S E L + A Sbjct: 412 FLAQTILLQTLSIAAAGEAGRLTSGETRELTGVLEGAPDAARRAILASEGAAREAASLLK 471 Query: 462 WAKNFLFLGRGLNYPVALEGALKLKEVSYIHAEGYSAAEIKHGPIALINPETPSVFLVPH 521 A + +GRGL +A+E ALK+KEVSYIHAE Y A E KHGPIAL+ P V++V Sbjct: 472 GAGSMYIIGRGLGGRLAMEAALKVKEVSYIHAEAYPAGESKHGPIALVEPGF-KVYVVAT 530 Query: 522 DELREKVLSNMKEVKSRGGKVVALCTEGDPDVREIADDVIEIPAV--YRYMYPYLMVVPL 579 + E V+ N E+K+RG V + +V+++P + PY + Sbjct: 531 SDSPE-VMGNAIEMKARGASVTVVAPSDLQLDTPEGIEVLKMPPTGGETLLDPYSLTPYF 589 Query: 580 QLFAYYMALELGRDVDQPRNLAKSVTVE 607 QL AY++A+ G D D+PRNLAK+VTVE Sbjct: 590 QLLAYHLAVARGYDPDKPRNLAKTVTVE 617 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 628,196 Number of Sequences: 1700 Number of extensions: 29399 Number of successful extensions: 101 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94 Number of HSP's gapped (non-prelim): 1 length of query: 607 length of database: 492,079 effective HSP length: 82 effective length of query: 525 effective length of database: 352,679 effective search space: 185156475 effective search space used: 185156475 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717905|ref|YP_003873437.1| hypothetical protein STHERM_c01900 [Spirochaeta thermophila DSM 6192] (367 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 373,257 Number of Sequences: 1700 Number of extensions: 17400 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 0 length of query: 367 length of database: 492,079 effective HSP length: 78 effective length of query: 289 effective length of database: 359,479 effective search space: 103889431 effective search space used: 103889431 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717906|ref|YP_003873438.1| hypothetical protein STHERM_c01910 [Spirochaeta thermophila DSM 6192] (137 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.133 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 129,070 Number of Sequences: 1700 Number of extensions: 4675 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 137 length of database: 492,079 effective HSP length: 68 effective length of query: 69 effective length of database: 376,479 effective search space: 25977051 effective search space used: 25977051 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717907|ref|YP_003873439.1| hypothetical protein STHERM_c01920 [Spirochaeta thermophila DSM 6192] (101 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.132 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,767 Number of Sequences: 1700 Number of extensions: 3811 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 101 length of database: 492,079 effective HSP length: 64 effective length of query: 37 effective length of database: 383,279 effective search space: 14181323 effective search space used: 14181323 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717908|ref|YP_003873440.1| hypothetical protein STHERM_c01930 [Spirochaeta thermophila DSM 6192] (228 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.144 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 231,951 Number of Sequences: 1700 Number of extensions: 10709 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 0 length of query: 228 length of database: 492,079 effective HSP length: 74 effective length of query: 154 effective length of database: 366,279 effective search space: 56406966 effective search space used: 56406966 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717909|ref|YP_003873441.1| homoserine dehydrogenase [Spirochaeta thermophila DSM 6192] (440 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431340|ref|NP_147740.2| homoserine dehydrogenase [Aeropyru... 84 9e-18 >gi|118431340|ref|NP_147740.2| homoserine dehydrogenase [Aeropyrum pernix K1] Length = 332 Score = 83.6 bits (205), Expect = 9e-18 Identities = 80/245 (32%), Positives = 116/245 (47%), Gaps = 35/245 (14%) Query: 82 GTGVAKTITEEALKAGKHVVTANKALLAHHGPDLLRLAREHG---VAVAFEASCGGGIPI 138 G G A+ AL+ GK VV A+K P + L EHG + ++A+ G P+ Sbjct: 96 GLGYARA----ALEDGKVVVAADK-------PPVALLLLEHGGPPPGLFYKATVMAGTPL 144 Query: 139 IRALYDGLIANRIDALYGIVNGTCNYILTRMIGEGIPYEAALKEAQEQGFAEADPTLDVS 198 I L GL R+ + G++NGT NYIL ++ EG+P E A++ A G AE DP+ D+ Sbjct: 145 IDLLRVGLAGRRVLRVVGVLNGTSNYILNLLM-EGVPLEEAVEAAVRLGIAEPDPSADLR 203 Query: 199 GMDSAHKLTIMASLAFGCRVDLNAVPVQGIHRLELLDIT--------YGRELGYVMKLLA 250 G+D A K +I+A GC V V V G + D G L Y ++ Sbjct: 204 GVDLALKASIVAQ-TLGCPVGPGDVVVGG----TVYDAAGWAPGLRGAGAALRYTARVDV 258 Query: 251 VARREEGGLSLVVRPSFISTEHPLAWVSGSFNAVSVYGHATGHTMYYGRGAGSRPTASAI 310 R E GL+L S + + + GS NA +V G G GAG TA+ + Sbjct: 259 AGCRAEIGLTLHGAGSRLYS------LPGSLNA-AVIGLEDSTIYLEGPGAGLGVTAATL 311 Query: 311 VADIV 315 ++D+V Sbjct: 312 LSDLV 316 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 465,868 Number of Sequences: 1700 Number of extensions: 22018 Number of successful extensions: 64 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 63 Number of HSP's gapped (non-prelim): 1 length of query: 440 length of database: 492,079 effective HSP length: 80 effective length of query: 360 effective length of database: 356,079 effective search space: 128188440 effective search space used: 128188440 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717910|ref|YP_003873442.1| hypothetical protein STHERM_c01950 [Spirochaeta thermophila DSM 6192] (295 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 342,568 Number of Sequences: 1700 Number of extensions: 16744 Number of successful extensions: 72 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72 Number of HSP's gapped (non-prelim): 0 length of query: 295 length of database: 492,079 effective HSP length: 76 effective length of query: 219 effective length of database: 362,879 effective search space: 79470501 effective search space used: 79470501 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717911|ref|YP_003873443.1| photolyase-like protein [Spirochaeta thermophila DSM 6192] (362 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 390,019 Number of Sequences: 1700 Number of extensions: 17973 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 0 length of query: 362 length of database: 492,079 effective HSP length: 78 effective length of query: 284 effective length of database: 359,479 effective search space: 102092036 effective search space used: 102092036 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717912|ref|YP_003873444.1| hypothetical protein STHERM_c01970 [Spirochaeta thermophila DSM 6192] (354 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 397,043 Number of Sequences: 1700 Number of extensions: 19897 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 0 length of query: 354 length of database: 492,079 effective HSP length: 78 effective length of query: 276 effective length of database: 359,479 effective search space: 99216204 effective search space used: 99216204 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717913|ref|YP_003873445.1| sugar ABC transporter [Spirochaeta thermophila DSM 6192] (365 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 322 1e-89 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 315 9e-88 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 298 1e-82 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 276 4e-76 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 216 5e-58 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 133 6e-33 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 132 2e-32 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 115 2e-27 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 113 6e-27 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 112 2e-26 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 111 3e-26 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 106 1e-24 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 105 1e-24 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 103 5e-24 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 100 7e-23 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 99 2e-22 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 98 3e-22 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 97 5e-22 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 92 2e-20 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 92 2e-20 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 91 4e-20 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 89 1e-19 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 89 1e-19 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 89 2e-19 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 88 3e-19 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 88 4e-19 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 87 8e-19 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 86 2e-18 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 83 1e-17 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 81 4e-17 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 81 4e-17 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 78 3e-16 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 74 6e-15 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 72 2e-14 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 72 2e-14 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 69 2e-13 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 68 4e-13 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 66 2e-12 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 62 2e-11 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 52 2e-08 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 49 1e-07 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 322 bits (824), Expect = 1e-89 Identities = 181/367 (49%), Positives = 248/367 (67%), Gaps = 23/367 (6%) Query: 1 MATVELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGD 60 MA V L+ + K +G K A+K ++ ++DGE VVL+GPSGCGKTTTLR++AGLE G Sbjct: 1 MAGVRLEGIVKRFG-KTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGR 59 Query: 61 LFIDGARMNDVPPKDRDIAMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHKAAQ 120 ++ DG + +PPKDR++AMVFQ+YAL+PHM V+DN+AF LKI+K P++EI +RV AA+ Sbjct: 60 VYFDGRDVTGLPPKDRNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAAE 119 Query: 121 ILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSAL 180 +L+I+ LL+R P +LSGGQ+QRVAV RAIV EP+V L DEPLSNLDA LR++MR+E+ L Sbjct: 120 LLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKL 179 Query: 181 HHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQLYNHPVNLFVAGFIGSPPM 240 RLG TMIYVTHDQVEAM + DRIVVM G IQQ+GTP +Y+ P N FVA FIGSP M Sbjct: 180 QRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDVYHRPANTFVATFIGSPQM 239 Query: 241 NFISSTIREEGAHLVADEGDFQ-IIVPEKYEKALKPYVGKQIIFGIRPEDLTYDPSGKGE 299 N S + G L A G + + +P+ +++ G+RPED+ GKG+ Sbjct: 240 NLFSGKV--AGGRLEALGGIVEGVGLPD-----------GEVLVGVRPEDVAL---GKGD 283 Query: 300 I--KATVTVVEPLGAE--IHLYITTGQNQIIARTPPQHEFKVGEKVSFKPNLERAHFFDP 355 + +A V VE LG++ +HL +GQ I+A+ G +V + E+ H FD Sbjct: 284 LTFEAYVDFVEDLGSDSVVHLKTQSGQ-VIVAKLSGGEPPSPGSRVIAGVSREKIHIFDK 342 Query: 356 ETERSLT 362 E+ +++T Sbjct: 343 ESGKAIT 349 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 315 bits (808), Expect = 9e-88 Identities = 179/368 (48%), Positives = 237/368 (64%), Gaps = 8/368 (2%) Query: 1 MATVELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGD 60 MA + L+ V K +G KV AV ++S++DGEF VL+GPSGCGKTTTLR+IAGLE EG Sbjct: 1 MAEIRLEGVVKRFG-KVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGR 59 Query: 61 LFIDGARMNDVPPKDRDIAMVFQNYALYPHMSVYDNMAFGLKIRK----FPKEEIDQRVH 116 + IDG + PKDR++AMVFQNYALYPHMSV+DN+AF L +R+ K++I +RV Sbjct: 60 ILIDGEDVTFKDPKDRNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVI 119 Query: 117 KAAQILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAE 176 + A++L IE+LL+RKP +LSGGQ+QRVA+ RA+VR PKV+L DEPLSNLDA LR+ MRAE Sbjct: 120 EVAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAE 179 Query: 177 LSALHHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQLYNHPVNLFVAGFIG 236 L L L T +YVTHDQ EAM+MADRI VM G + Q+GTP ++Y P + FVA FIG Sbjct: 180 LKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEVYMRPKHTFVATFIG 239 Query: 237 SPPMNFISSTIREEGAHLVADEGDFQIIVPEKYEKALKPYVGKQIIFGIRPEDLTYD-PS 295 +PPMN + + G L F VPE+ ++ ++I GIRPE ++ Sbjct: 240 APPMNLVECDVESVGEDLWISCPGFSRRVPEEARSVIESKGVRKIYLGIRPEFISVSRRE 299 Query: 296 GKGEIKATVTVVEPLGAEIHLYITTGQNQIIAR--TPPQHEFKVGEKVSFKPNLERAHFF 353 +G I V VVEPLG+E + + G II + + G+KV K + + F Sbjct: 300 TEGSIAGKVYVVEPLGSEYVVNVDIGDGIIIKAKVLGLREKMTPGDKVYLKLDWSKVKIF 359 Query: 354 DPETERSL 361 D T +L Sbjct: 360 DYRTGEAL 367 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 298 bits (764), Expect = 1e-82 Identities = 161/361 (44%), Positives = 229/361 (63%), Gaps = 5/361 (1%) Query: 1 MATVELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGD 60 MA+V+L+ V KV+G V AV+D N+ +ED EFV ++GPSG GKTT L +IAG+ + G Sbjct: 1 MASVKLEGVWKVFGN-VVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGR 59 Query: 61 LFIDGARMNDVPPKDRDIAMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHKAAQ 120 ++ + + D+PP R+I +VFQNYALYPHM+VY+N+AF L++R F + I ++V A+ Sbjct: 60 IYFNDVDVTDLPPNKRNIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVAK 119 Query: 121 ILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSAL 180 +L IE LL+R P +LSGGQ+QRVA+ RA+V+EP+V L DEPLSNLDA LR+++R+EL L Sbjct: 120 LLGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKL 179 Query: 181 HHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQLYNHPVNLFVAGFIGSPPM 240 LG T IYVTHDQ EA+ MADRI ++ G+IQQ+G P +Y P N+FVA FIG+PP Sbjct: 180 QKELGITAIYVTHDQSEALAMADRIAIIASGVIQQVGKPWDVYYKPRNVFVASFIGTPPA 239 Query: 241 NFISSTIREEGAHLVADEGDFQIIVPEKYEKALKPYVGKQIIFGIRPEDLTYDPSGKGE- 299 N +S + L+ G + P + + L +I G RPE S G+ Sbjct: 240 NLVSVPLDSSRRCLLLPGGG-RYCPPRRIAEKLAAVKTNSVILGFRPEVAVLSESPLGDY 298 Query: 300 --IKATVTVVEPLGAEIHLYITTGQNQIIARTPPQHEFKVGEKVSFKPNLERAHFFDPET 357 ++A V VE LG E + + +Q+ PP E + G ++ ++ +FDPET Sbjct: 299 VSMEAEVYTVETLGRENIVTLLVNGSQVKVIVPPVVEPRPGSRIFINIEEDKVMYFDPET 358 Query: 358 E 358 E Sbjct: 359 E 359 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 276 bits (707), Expect = 4e-76 Identities = 157/356 (44%), Positives = 229/356 (64%), Gaps = 7/356 (1%) Query: 1 MATVELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGD 60 MA + L++VTK +G V A+ ++++ DGE L+GPSGCGKTTTLR+IAG E EG Sbjct: 1 MAGIRLESVTKRFGNTV-ALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGR 59 Query: 61 LFIDGARMNDVPPKDRDIAMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHKAAQ 120 ++I + + P +R+ AMVFQNYAL+PHM V+DN+A+GLK+RK P+ EI +RV AA+ Sbjct: 60 VYIGSRDVTMLKPYERNTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWAAE 119 Query: 121 ILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSAL 180 +L+I+ LL+R P +LSGGQ+QRVAV RAIV EP+V L DEPLSNLDA LR++MR E+ L Sbjct: 120 LLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRL 179 Query: 181 HHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQLYNHPVNLFVAGFIG-SPP 239 RLG T++YVTHDQ EA++++ R+ VM G ++Q+GTP+++Y P FVA FIG S Sbjct: 180 QKRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVYEKPATYFVATFIGRSTV 239 Query: 240 MNFISSTIREEGAHLVADEGDFQIIVPEKYEKALKPYVGKQIIFGIRPE--DLTYDPSGK 297 ++ S + G VA EG I+ + E L+ G+++ IRPE + ++ +G+ Sbjct: 240 LDGRVSEVLGSGMVRVALEGGLSIVGTD-MEGGLRQ--GERVKVVIRPERVKVGHEYNGE 296 Query: 298 GEIKATVTVVEPLGAEIHLYITTGQNQIIARTPPQHEFKVGEKVSFKPNLERAHFF 353 + V++ LG L + G +I + P+ G+ V F + E A + Sbjct: 297 NVFEGKVSLAMFLGWRTQLKVEVGGQEITIYSDPRRAPLPGQPVRFYIDPEEAKVY 352 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 216 bits (551), Expect = 5e-58 Identities = 121/267 (45%), Positives = 166/267 (62%), Gaps = 8/267 (2%) Query: 4 VELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFI 63 V L NV YG +V A++ + S + ++GPSGCGKTT L++IAGL G +F Sbjct: 6 VRLDNVHASYG-EVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFF 64 Query: 64 DGARMNDVPPKDRDIAMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHKAAQILD 123 G +PP+ R + VFQ+ AL+PHM+VYDN+AFGL+ R F E+ ++V A + + Sbjct: 65 GGVDYTGLPPERRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWALETVG 124 Query: 124 I---EELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSAL 180 + E + R+ LSGGQ+QRVA+ RAI EP V L DEPLS+LD K+R ++ AEL L Sbjct: 125 LTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRL 184 Query: 181 HHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQLYNHPVNLFVAGFIGSP-- 238 +LG TMIYVTHDQ EAM +AD +V+MRDG I Q GTP ++Y P N++VA F G Sbjct: 185 QRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEVYTRPANVYVATFFGDANI 244 Query: 239 -PMNFISSTIREEGAHLVADEGDFQII 264 P ++ E A +V E D +I+ Sbjct: 245 IPKELLTPGSGGEWAIMVRPE-DLEIV 270 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 133 bits (335), Expect = 6e-33 Identities = 84/236 (35%), Positives = 129/236 (54%), Gaps = 15/236 (6%) Query: 17 VTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFIDGA-----RMNDV 71 V AV ++ + +GE + +VG SGCGKTT + I G+E+ ++G ++ G R+ Sbjct: 35 VRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARD 94 Query: 72 PPKDRDIAMVFQN--YALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHKAAQILDI----- 124 R + MVFQ+ +L P M V D +A L I + E +R +A ++L+ Sbjct: 95 RRLRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARR--RAVEMLETVGLTP 152 Query: 125 -EELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSALHHR 183 E RKP +LSGGQRQRVA+ R +V EP+V + DEP+S +D +R + + H R Sbjct: 153 GREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRR 212 Query: 184 LGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQLYNHPVNLFVAGFIGSPP 239 G T++ +THD A +ADRI VM G I ++G P + +P + + A + S P Sbjct: 213 TGATIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVIENPRHPYTAALVTSTP 268 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 132 bits (331), Expect = 2e-32 Identities = 79/225 (35%), Positives = 126/225 (56%), Gaps = 8/225 (3%) Query: 4 VELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFI 63 +E++ + Y G+ +K ++S+ GE +V++GPSG GK+T L+ I L + G + Sbjct: 5 LEVRGLVVSYSGE-KVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVF 63 Query: 64 DGARMNDVPPKD-----RDIAMVFQNYALYPHMSVYDNMAFGL-KIRKFPKEEIDQRVHK 117 G + + R I + Q+Y+L+PHM+V N+ + L K + + ++R K Sbjct: 64 RGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAEERAVK 123 Query: 118 AAQILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAEL 177 +L IE+L R P LSGGQ+QR A+ RA+ EP + L DEP S LD + R + L Sbjct: 124 YLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEAL 183 Query: 178 SALHHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQL 222 + LGK MI VTH+ A+ +ADR+ M DG++++ G P +L Sbjct: 184 FRV-ATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSEL 227 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 115 bits (287), Expect = 2e-27 Identities = 70/230 (30%), Positives = 125/230 (54%), Gaps = 13/230 (5%) Query: 20 VKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDI-----TEGDLFIDGARMNDVPPK 74 +K + + G ++GPSG GK+T +R+I L D+ EG+++I+ + P Sbjct: 21 LKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVMKEDPY 80 Query: 75 D--RDIAMVFQNYALYPHMSVYDNMAFGLKIRKFPK--EEIDQRVHKAAQIL----DIEE 126 + R MVFQ +PHM++Y+N+A G K+ K +E+D+ V A ++ ++++ Sbjct: 81 NIRRYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEIVEWALKMAHLWDEVKD 140 Query: 127 LLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSALHHRLGK 186 L P +LSGGQRQR+++ RA+ +P+V L DEP +N+D V++ + Sbjct: 141 RLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKEEMA 200 Query: 187 TMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQLYNHPVNLFVAGFIG 236 T+I VTH +A ++D+I+ + +G + + G +L P + F+G Sbjct: 201 TVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELVLRPRHELTKKFLG 250 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 113 bits (283), Expect = 6e-27 Identities = 71/232 (30%), Positives = 123/232 (53%), Gaps = 21/232 (9%) Query: 4 VELKNVTKVY---GGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGD 60 V ++ V K+Y G ++ A+++ ++SV GE + ++GPSG GKTT L +IAG++ G Sbjct: 11 VVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGR 70 Query: 61 LFIDGARMNDVPPKD------RDIAMVFQNYALYPHMSVYDN----MAFGLKIRKFPKEE 110 + +DG ++ ++ + VFQ + L P ++ +N MA K + +E Sbjct: 71 VIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIPTLTALENILLPMALAGKANRLRGQE 130 Query: 111 IDQRVHKAAQILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLR 170 + +RV + R P+ELSGG++QR+AV A+ +P + + DEP LD Sbjct: 131 LLRRVGLGGK-------ERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATG 183 Query: 171 VQMRAELSALHHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQL 222 ++ L H GKT++ THD MADR+ V+ DG ++ + +P ++ Sbjct: 184 ERIVRILLEEAHSRGKTVVLTTHDP-RVARMADRVAVIEDGRLRGVYSPSRI 234 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 112 bits (279), Expect = 2e-26 Identities = 76/254 (29%), Positives = 125/254 (49%), Gaps = 31/254 (12%) Query: 17 VTAVKDANISVEDGEFVVLVGPSGCGKTTT----LRMIAG-------------LEDITE- 58 V AV + S+ GE LVG SGCGKTTT LR++ LE++ Sbjct: 47 VKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERR 106 Query: 59 -----GDLFID--GARMNDVPPKDRDIAMVFQNY--ALYPHMSVYDNMAFGLKIRKF--- 106 GD F+D P R++ +V+Q+ +L P ++ + L I Sbjct: 107 GVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNA 166 Query: 107 -PKEEIDQRVHKAAQILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNL 165 +EE+ R+ +A ++ + ++R P +LSGGQRQRVA+ RA + P + + DEP+S L Sbjct: 167 REREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSML 226 Query: 166 DAKLRVQMRAELSALHHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQLYNH 225 D +R ++ L +LG +++++THD A + DRI VM G I + G ++ Sbjct: 227 DVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDARRIIER 286 Query: 226 PVNLFVAGFIGSPP 239 P++ + + + P Sbjct: 287 PIHPYTKALVAAIP 300 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 111 bits (277), Expect = 3e-26 Identities = 73/250 (29%), Positives = 124/250 (49%), Gaps = 17/250 (6%) Query: 15 GKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLED----ITEGDLF-------- 62 G V A+ + V GE + +VG SGCGK+T R IA + I +G + Sbjct: 20 GVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNT 79 Query: 63 IDGARMND---VPPKDRDIAMVFQN--YALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHK 117 +D R+++ V + + ++M+FQ+ AL P V + + K E+I Q + K Sbjct: 80 VDLVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDHVSGEKRRVEKIAQEILK 139 Query: 118 AAQILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAEL 177 + +LE+ P ELSGG +QR+ + +++ P++ + DEP + LD ++ Q+ L Sbjct: 140 KLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKML 199 Query: 178 SALHHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQLYNHPVNLFVAGFIGS 237 S L L T+I +TH+ A +ADRI VM G + ++ L+ P++ + G + S Sbjct: 200 SRLREELETTIILITHNLAVAAEIADRIAVMYAGHVVEVADVFSLFERPLHPYTKGLLKS 259 Query: 238 PPMNFISSTI 247 P + I Sbjct: 260 IPKPHVDEEI 269 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 106 bits (264), Expect = 1e-24 Identities = 67/216 (31%), Positives = 115/216 (53%), Gaps = 4/216 (1%) Query: 4 VELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFI 63 V ++ + KVY V A+ + + ++ GE L+G +G GKTT +R++ G T G++++ Sbjct: 13 VAMRGIVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYV 72 Query: 64 DGARMNDVPPKD---RDIAMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHKAAQ 120 G +++ P D IAMV+Q + L M+V +N+A L + E +R + A+ Sbjct: 73 WGRKVSWRGPWDAIRNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRTLETAE 132 Query: 121 ILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSAL 180 L +E L + +L G RQRV + +A+ KV + DEP SNL L + L Sbjct: 133 RLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNL-TPLEAEKLFSTLRL 191 Query: 181 HHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQI 216 +G +++Y+TH E + +ADR+ V+R G + + Sbjct: 192 LKDMGVSVVYITHKLGEVVRVADRVTVLRRGRVSAV 227 Score = 59.3 bits (142), Expect = 1e-10 Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 22/224 (9%) Query: 4 VELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFI 63 + ++ V+ V G V V++ ++ V +GE V + G +G G+ + I GL G + + Sbjct: 263 LSVRGVSVVVDG-VERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEV 321 Query: 64 DGARMN---DVPPKDRDIAMVFQNYALYPHMSVYDNMAF-------GLKIRKFPKEEIDQ 113 G R+ D + L SV +N+AF L +R+ E++ + Sbjct: 322 QGRRIEGSLDFYRAGGGYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRRSRLEDLFR 381 Query: 114 RVHKAAQILDIEELLERKP----KELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKL 169 R +++ L+ R P LSGG +Q+V VG ++R K+ + P LD Sbjct: 382 R------LVERFRLVARSPWTPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIAT 435 Query: 170 RVQMRAELSALHHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLI 213 +R LS L R G ++ V+ D E + ++DRI VM G + Sbjct: 436 TSFVRNLLSEL-ARQGAGILLVSTDLDEILELSDRIYVMSGGRV 478 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 105 bits (263), Expect = 1e-24 Identities = 70/222 (31%), Positives = 109/222 (49%), Gaps = 3/222 (1%) Query: 2 ATVELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDL 61 A V + + K YGG AV + + GE L+GP+G GKTTT++M++ L T G+ Sbjct: 5 AMVVAEELVKDYGG-FRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEA 63 Query: 62 FIDGARMNDVPPKDRD-IAMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHKAAQ 120 +I G + P R I +V Q+ MS +DN+ ++ P E +R + Sbjct: 64 WIAGYSIVREPGNVRRVIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEARERTREVLD 123 Query: 121 ILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSAL 180 LD+ E R+ SGG R+++ + ++V PKV DEP LD R + + L Sbjct: 124 YLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDL 183 Query: 181 HHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQL 222 R T++ TH EA ++DR+ ++ G I GTP +L Sbjct: 184 -KRSAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEEL 224 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 103 bits (258), Expect = 5e-24 Identities = 69/232 (29%), Positives = 118/232 (50%), Gaps = 8/232 (3%) Query: 17 VTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFIDGA-----RMNDV 71 V AV + I + G+ + LVG SG GKTT R+I LE+ T G +F DG R + Sbjct: 49 VKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGL 108 Query: 72 PPKDRDIAMVFQNY--ALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHKAAQILDIEEL-L 128 R ++FQ+ +L P ++++ +A +K+ ++ + + + + E L Sbjct: 109 KEFRRRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQVGLNETHL 168 Query: 129 ERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSALHHRLGKTM 188 R P E SGGQRQR+A+ R + +P+ + DEP S LD ++ Q+ L L + T Sbjct: 169 YRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTY 228 Query: 189 IYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQLYNHPVNLFVAGFIGSPPM 240 ++++HD M+D I VM G I + G +++ P++ + + S P+ Sbjct: 229 LFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEVFEKPLHPYTKVLLESIPV 280 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 100 bits (248), Expect = 7e-23 Identities = 77/257 (29%), Positives = 127/257 (49%), Gaps = 18/257 (7%) Query: 1 MATVELKNVTKVY---GGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTL----RMIAGL 53 MA ++++++ Y G V AV ++SV GE++ +VG SG GK+T R+I Sbjct: 1 MAVLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPP 60 Query: 54 EDITEGDLFIDGARMNDVPPKD------RDIAMVFQNYALY--PHMSVYDNMAFGLKIRK 105 I G + G + + ++ R+I MVFQ+ Y P+ +V +A L Sbjct: 61 GRIVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHG 120 Query: 106 FPKE--EIDQRVHKAAQILDI-EELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPL 162 E + A +++ I + P +LSGGQRQRVA+ A+ EPK+ + DEP Sbjct: 121 LASSGSEAESMAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPT 180 Query: 163 SNLDAKLRVQMRAELSALHHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQL 222 + LD ++ ++ + L G T++ VTHD A +DRI VM G + +IG + Sbjct: 181 TALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDV 240 Query: 223 YNHPVNLFVAGFIGSPP 239 ++P++ + I S P Sbjct: 241 VSNPIHPYTEMLIKSVP 257 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 99.0 bits (245), Expect = 2e-22 Identities = 78/271 (28%), Positives = 125/271 (46%), Gaps = 45/271 (16%) Query: 15 GKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFIDG--------- 65 G V AV ++S++ GE + +VG SG GKTT + I GL G +FID Sbjct: 25 GYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELEEAV 84 Query: 66 ------ARMNDVPPKD-------------------------RDIAMVFQN--YALYPHMS 92 R +V +D R + MV Q+ +L P M Sbjct: 85 SIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMK 144 Query: 93 VYDNMAFGLKIRKFPK--EEIDQRVHKAAQILDI-EELLERKPKELSGGQRQRVAVGRAI 149 V + + +++ K E + +RV + + + + +E +R P ELSGGQRQRVA+ RA+ Sbjct: 145 VGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIARAL 204 Query: 150 VREPKVFLFDEPLSNLDAKLRVQMRAELSALHHRLGKTMIYVTHDQVEAMTMADRIVVMR 209 PK+ + DEP S LD ++ Q+ L L + G T + +THD M+ +VVM Sbjct: 205 ALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMY 264 Query: 210 DGLIQQIGTPLQLYNHPVNLFVAGFIGSPPM 240 G I + L+ +P++ + + + P+ Sbjct: 265 SGKIMESAPKHILFTNPLHPYTKLLLSAVPI 295 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 98.2 bits (243), Expect = 3e-22 Identities = 61/214 (28%), Positives = 120/214 (56%), Gaps = 8/214 (3%) Query: 4 VELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFI 63 ++L++V+ YG K+ + D ++ + G V+VGP+G GK+T L+ + G + +G + Sbjct: 6 IKLEDVSAGYG-KLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLF 64 Query: 64 DGARMNDVPPKDR---DIAMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHKAAQ 120 + + +PP DR + +FQ ++ ++VY+N+ L P++ R+ + Sbjct: 65 ENTDVTHMPPHDRAKIGMTFIFQLENIFRELTVYENLR--LAGYDLPEDVFRDRLEEVFS 122 Query: 121 ILD-IEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSA 179 + ++E L +K LSGG+RQ +A+ I+R+PKVFL DEP + L KL ++ + + Sbjct: 123 MFPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVRI 182 Query: 180 LHHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLI 213 L ++ G T++ V + ++ + D+ V++ +G I Sbjct: 183 L-NKEGYTVVLVEQNVKASLEIGDKGVLVVNGRI 215 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 97.4 bits (241), Expect = 5e-22 Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 23/231 (9%) Query: 3 TVELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEG--- 59 TVE + + K +GG+ TAV + SV DGE ++GP+G GKTT LRM++G+ + G Sbjct: 4 TVEARGLRKRFGGR-TAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVR 62 Query: 60 ----DLFIDGAR----MNDVPPKDRDIAMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEI 111 D++ DG R + P+D +A + ++ G+ R+ Sbjct: 63 VCGYDVWGDGWREARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARRE------ 116 Query: 112 DQRVHKAAQILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRV 171 + ++L E++L R LSGGQR+ + + A+ P+V + DEP S LD + R Sbjct: 117 ---ARRVLEMLGFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARE 173 Query: 172 QMRAELSALHHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQL 222 + A L G+T+++ +HD EA +DR+++M G + G P +L Sbjct: 174 SLWASLRKAFK--GRTVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPREL 222 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 92.4 bits (228), Expect = 2e-20 Identities = 61/210 (29%), Positives = 109/210 (51%), Gaps = 7/210 (3%) Query: 17 VTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFIDG----ARMNDVP 72 + A+ ++ V G L+GP+G GKTT +++++ L G + G N+V Sbjct: 26 IRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANNV- 84 Query: 73 PKDRDIAMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHKAAQILDIEELLERKP 132 + R ++ ALY +S +DN+ F ++ P E +RV + +I+ +EE + Sbjct: 85 -RSRIGVVLGGERALYWRLSGWDNLWFFSQLYGIPPREAKRRVKELLEIVGLEEWAHVRV 143 Query: 133 KELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSALHHRLGKTMIYVT 192 + S G +QR+ + R ++ +P+V L DEP LD K ++R+ + + R G+T++ T Sbjct: 144 ENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRI-VREGRTVLLTT 202 Query: 193 HDQVEAMTMADRIVVMRDGLIQQIGTPLQL 222 H VEA ++DR+ ++ G I G P L Sbjct: 203 HYMVEAEELSDRVAIISKGRIVAEGPPEDL 232 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 92.0 bits (227), Expect = 2e-20 Identities = 70/229 (30%), Positives = 114/229 (49%), Gaps = 10/229 (4%) Query: 4 VELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFI 63 +E+K++ VY G+ A+ ++ V GE V L+G +G GKTTTL I+GL G + Sbjct: 7 LEVKSID-VYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIW 65 Query: 64 DGARMNDVPPKDR---DIAMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHKAAQ 120 G + +P R I+ V + ++P ++VY+N+ R+ KE + + Sbjct: 66 QGRDITGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRVAASTRR-AKEHFQDSLEQVYT 124 Query: 121 ILDIEELLERKPK---ELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAEL 177 I I L R+ + LSGG++Q +A+ RA+++ P + + DEP L KL + Sbjct: 125 IFPI--LKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLA 182 Query: 178 SALHHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQLYNHP 226 S L LG T++ V + ++ +ADR VM G I G +L P Sbjct: 183 SRLREELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDELALDP 231 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 90.9 bits (224), Expect = 4e-20 Identities = 59/213 (27%), Positives = 113/213 (53%), Gaps = 11/213 (5%) Query: 17 VTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFIDGARMNDVPPKDR 76 V A+K + SV +GE +GP+G GKTTT+R+++ L D G+ + G DV + Sbjct: 25 VEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAGF---DVVKERW 81 Query: 77 DI-----AMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHKAAQILDIEEL--LE 129 ++ M+ Y ++ +N+ + +I P+ E+ R+ + ++ + +L + Sbjct: 82 EVRKRIGVMLSVERGFYWKLTGRENLYYFGRIYGIPQGELKSRIKEVLDLVGLTDLGGAD 141 Query: 130 RKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSALHHRLGKTMI 189 + +E+S G + R+ + R ++++P+V + DEP LD +R + +L G+T+ Sbjct: 142 KPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSLASE-GRTIF 200 Query: 190 YVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQL 222 TH+ VEA ++DR+ ++ G I GTP +L Sbjct: 201 ITTHNMVEAEMISDRVGIIIGGRIAMEGTPDEL 233 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 89.4 bits (220), Expect = 1e-19 Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 15/250 (6%) Query: 5 ELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLED----ITEGD 60 +LK G V AV + ++ GE + + G SG GK+T I GL I G Sbjct: 10 DLKTYFYTLRGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGR 69 Query: 61 LFIDGARMNDVPPKD-------RDIAMVFQNY--ALYPHMSVYDNMAFGLKI-RKFPKEE 110 + IDG + + + + ++MVFQ L P +V + L+I R + E Sbjct: 70 IMIDGMDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHE 129 Query: 111 IDQRVHKAAQILDIEE-LLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKL 169 QRV++ + + + + +R P ELSGGQ+QRV + A+ EP + + DEP + LD + Sbjct: 130 ARQRVYELLESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVV 189 Query: 170 RVQMRAELSALHHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQLYNHPVNL 229 + Q+ L L ++I +THD +A+ +++M G I + G ++ P + Sbjct: 190 QAQILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEYGPSDAVFTKPQHP 249 Query: 230 FVAGFIGSPP 239 + + + P Sbjct: 250 YTQALLKAIP 259 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 89.4 bits (220), Expect = 1e-19 Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 6/219 (2%) Query: 6 LKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFIDG 65 ++++ VY G V A+K S G L+G +G GKTT L+ I G+ +G + +DG Sbjct: 7 VEDLDVVYPGGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDG 66 Query: 66 ARMNDVPPKD---RDIAMVFQNYALYPHMSVYDNMAFGLKI--RKFPKEEIDQRVHKAAQ 120 + P D I M QN +YP + Y+++A L + RK + + +A++ Sbjct: 67 YELRPKGPGDSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAEASE 126 Query: 121 ILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSAL 180 L + +R E+ +RQR+ V +A+ + L DEP ++L + +M E + Sbjct: 127 ALGLNIDPDRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARM-LEAAGR 185 Query: 181 HHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTP 219 G ++ VTH EAM ADR+V++R G+ G P Sbjct: 186 LAASGAAVLLVTHRIGEAMEHADRLVILRKGVKVYEGPP 224 Score = 48.5 bits (114), Expect = 3e-07 Identities = 48/204 (23%), Positives = 92/204 (45%), Gaps = 15/204 (7%) Query: 23 ANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFIDGARMNDVPPKDRD----- 77 A + V GE V + G +G G+ +I GL +G + I G + PP R Sbjct: 273 ARLEVRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRLGLG 332 Query: 78 -IAMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHK--AAQILDIEELLERKPK- 133 I +AL P S+ N+A + + +D R ++ A +++ + P+ Sbjct: 333 VIPEERLGHALVPGESIAFNIALSIHTAR-DGFIVDWRYYEKLAEEMIRDMGIKAVSPRQ 391 Query: 134 ---ELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSALHHRLGKTMIY 190 ELSGG QR+ + R + +P++ + P + LD + + Q AE+ + G ++ Sbjct: 392 MVDELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQ-QAVAEMMRMSSERGGVLV- 449 Query: 191 VTHDQVEAMTMADRIVVMRDGLIQ 214 + D + ++++I V G+++ Sbjct: 450 IDEDLDFLLRVSNKIYVASGGIVK 473 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 89.0 bits (219), Expect = 2e-19 Identities = 56/227 (24%), Positives = 114/227 (50%), Gaps = 11/227 (4%) Query: 4 VELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLED-----ITE 58 + + NV +Y + +K+ ++SVE G L+GP+G GKTT L+ ++G+ +T Sbjct: 5 LNVSNVEIMYHPFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTR 64 Query: 59 GDLFIDGARMNDVPPKD---RDIAMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEIDQRV 115 G + ++G + + P + R + V + ++ ++ +N+ +++I + Sbjct: 65 GSIQLEGEDITNREPDEIARRGVIYVMEGRRIFKELTTEENLVSVAYAAGASRDDIRSVL 124 Query: 116 HKAAQILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRA 175 ++ +E L K LSGG++Q +A+ A++ PK+ + DEP L K+ Q+ A Sbjct: 125 SYFPRL---KERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYA 181 Query: 176 ELSALHHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQL 222 + LH G T++ + +A+ ++D V+ +G I G+ +L Sbjct: 182 TIKMLHREEGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEEL 228 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 88.2 bits (217), Expect = 3e-19 Identities = 73/257 (28%), Positives = 123/257 (47%), Gaps = 24/257 (9%) Query: 6 LKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGL----EDITEGDL 61 LK Y G V A++D + + GE LVG +GCGK+ T R + L I EG + Sbjct: 15 LKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGRIVEGKI 74 Query: 62 FI--DGARMNDVPPKDR---------DIAMVFQN--YALYPHMS----VYDNMAFGLKIR 104 + + R D+ D +IA +FQ+ AL P + V + M ++R Sbjct: 75 YYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETMLAHGRVR 134 Query: 105 KFPKEEIDQRVHKAAQIL--DIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPL 162 +E + + V +L D E+ ++ P ELSGG +QR +G ++ PK+ + DEP Sbjct: 135 SL-REGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLIADEPT 193 Query: 163 SNLDAKLRVQMRAELSALHHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQL 222 + LD ++ Q+ L+ L G T++ +TH+ DR+ VM G I + +L Sbjct: 194 TALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEEAPVDEL 253 Query: 223 YNHPVNLFVAGFIGSPP 239 +++P++ + I + P Sbjct: 254 FSNPLHPYTRALIRAVP 270 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 87.8 bits (216), Expect = 4e-19 Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 19/225 (8%) Query: 3 TVELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLF 62 +V L+ V Y ++ + S++ G V L+GP+G GKTT LR++AG+ + G + Sbjct: 5 SVRLEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVE 64 Query: 63 IDGA------RMNDVPPKDRDI--AMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEIDQR 114 + G+ RM P ++ + AL V + +A+G + + Sbjct: 65 VCGSPPGRVRRMLGYAPASPEVDPRLKAVEVALLYRYGVSEGVAWGRRDW--------EE 116 Query: 115 VHKAAQILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMR 174 V A + + EL R+ ELS GQR+ V + + R P + L DEP S LD ++ Sbjct: 117 VLAALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVT 176 Query: 175 AELSALHHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTP 219 L +L R T++Y THD + AM AD ++++R+GL+ G P Sbjct: 177 LVLRSLRGR--ATIVYTTHDPLAAMA-ADSVIMLREGLLHAQGPP 218 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 86.7 bits (213), Expect = 8e-19 Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 5/220 (2%) Query: 4 VELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFI 63 +E + V K Y G+ + ++ V GE V LVGP+G GKTT +++ GL G + + Sbjct: 5 LEARGVVKKYRGQ-PVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLL 63 Query: 64 DGARMNDVPPKDRDIAMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHKAAQILD 123 +G P + +VF+ L M V + + I +D + A Sbjct: 64 NGLDPWREPRAREGVGVVFERPNLPSSMPVVEFLESAAAIIGSSPSRVDWAIRAAG---- 119 Query: 124 IEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSALHHR 183 +E + +LS G +QR A+ A++ EP+ + DEP SNLD R ++ L+ L+ Sbjct: 120 LEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLNRE 179 Query: 184 LGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQLY 223 G +++ +H VE + +A RI V+ G + G+P L+ Sbjct: 180 HGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDLF 219 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 85.5 bits (210), Expect = 2e-18 Identities = 58/232 (25%), Positives = 113/232 (48%), Gaps = 21/232 (9%) Query: 7 KNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFIDGA 66 +N+T +GG VTA+ + ++ V GE + ++GP+G GKT+ L +I G+ G ++ G Sbjct: 5 ENITLRFGG-VTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGR 63 Query: 67 RMNDVPPKDR---DIAMVFQNYALYPHMSVYDNMAFGLK-------------IRKFPKEE 110 + + P R ++ FQ+ L+ M+V +N+ L + + E Sbjct: 64 DITGLKPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWE 123 Query: 111 IDQRVHKAAQILDIEELLERKPKELSG---GQRQRVAVGRAIVREPKVFLFDEPLSNLDA 167 ++ R +A ++D+ +L E + + G +++V + A+ + P+V L DEP++ L Sbjct: 124 VEAR-ERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSK 182 Query: 168 KLRVQMRAELSALHHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTP 219 + + + + + TM+ + HD + DR+VVM G + G P Sbjct: 183 EEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPP 234 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 82.8 bits (203), Expect = 1e-17 Identities = 63/237 (26%), Positives = 119/237 (50%), Gaps = 7/237 (2%) Query: 4 VELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFI 63 +++++V K +GG + A+K + SV GE V L+GP+G GKTT +I+G+ G + Sbjct: 5 LDVRDVYKRFGG-IEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIY 63 Query: 64 DGARMNDVPPKDRD---IAMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHKAAQ 120 G + P R IA FQ +++V +N+ G +R E +R +A Sbjct: 64 KGVDITGWPAYRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAMEAID 123 Query: 121 ILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSAL 180 ++ + + K+L+ +++R+ + RA+ +P++ L DE + L + + L + Sbjct: 124 MVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLEI 183 Query: 181 HHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQLYNHPVNLFVAGFIGS 237 R G T+I V H M A+R++V+ G GTP ++ ++ L + ++G+ Sbjct: 184 SKR-GITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVASN--KLVIEAYMGT 237 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 81.3 bits (199), Expect = 4e-17 Identities = 58/246 (23%), Positives = 116/246 (47%), Gaps = 24/246 (9%) Query: 4 VELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFI 63 + ++++ K +GG + A+ N+ +E G+ +L+GP+G GKTT + +I+G G + Sbjct: 7 LRVEDLEKRFGG-IVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLF 65 Query: 64 DGARMNDVPPKDRD---IAMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEI--------- 111 G + + P + + FQ + +++V +N+ L P E + Sbjct: 66 KGRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENV---LTAADSPGENVYLAGLARRL 122 Query: 112 -----DQRVHKAAQILD---IEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLS 163 + +A +IL ++ + +R+ ELSGGQ + + + RAI++ ++ + DEP + Sbjct: 123 WLGFEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAA 182 Query: 164 NLDAKLRVQMRAELSALHHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQLY 223 ++ +L + + L G T + + H DR+ M G + G P ++ Sbjct: 183 GVNPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEVL 242 Query: 224 NHPVNL 229 N+PV L Sbjct: 243 NNPVVL 248 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 81.3 bits (199), Expect = 4e-17 Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 12/229 (5%) Query: 4 VELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFI 63 V ++++T Y G+ + N+ V ++GP+G GKTT L+ I GL G +F+ Sbjct: 3 VRVEDLTVAYNGE-PVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFL 61 Query: 64 DGARMNDVPPK-DRDIAMVFQNYA---LYPHMSVYDNMAFGLKIRKFPKEEIDQRVHKAA 119 DG P R V QN + L P M+V + + L++R + +R + Sbjct: 62 DGFEATGRPEMVGRYAGYVPQNPSAPKLSP-MTVREFVETSLRLRGVTRAR--ERAVEVL 118 Query: 120 QILDIE-ELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELS 178 L I E+LE + ELS G QRV + RAI +PK+ + DEPL+++D R+++ ++ Sbjct: 119 HTLGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIA 178 Query: 179 ALHHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTPLQLYNHPV 227 L + ++ +HD + D IVV+ LI G P ++Y V Sbjct: 179 GLARE--RLVLMTSHDPSLLLGHTDIIVVINRDLIAS-GPPEEVYREDV 224 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 78.2 bits (191), Expect = 3e-16 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 12/221 (5%) Query: 4 VELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFI 63 VE + V K GG+ +KD +++V G +VGP+G GKTT R + GL G + + Sbjct: 9 VEAEGVWKRLGGR-WVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVAL 67 Query: 64 DGARMNDVPPKDRDIAMVFQNYALYPHMSV-YDNMAFGLKIRKFPK----EEIDQRVHKA 118 G P +R +F+ A P Y NM +R + E+++ + +A Sbjct: 68 LGE------PVERAGGSLFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLEGYLEEA 121 Query: 119 AQILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELS 178 +++ + L + + S G R+R+ V + +P + + DEP + LD V +R L Sbjct: 122 SRLSGLGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLK 181 Query: 179 ALHHRLGKTMIYVTHDQVEAMTMADRIVVMRDGLIQQIGTP 219 R G T++ +H+ E ++ I ++ G I G+P Sbjct: 182 EYSERHGVTVLLSSHNMYEVESVCSEITMISSGRIVYSGSP 222 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 73.9 bits (180), Expect = 6e-15 Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 13/219 (5%) Query: 1 MATVELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGD 60 M+ V L++V Y G ++ ++ G +L GP+G GK+T LR+ AGL G Sbjct: 1 MSVVRLRDVWYRYPGGGWVLRGVSLEAPRG-ITLLAGPTGGGKSTILRVAAGLATRIYG- 58 Query: 61 LFIDGARMNDVPPKDRDIAMVFQNYALYP-HMSVYDNMAFGLKIRKFPKEEIDQRVHKAA 119 G +V + + + +V Q+Y L+ ++ + + + + P E + + A Sbjct: 59 ----GYLRGEVEARGKPV-LVPQDYDLFILSLTPREELEYCYEASGLPPWEARREAVRLA 113 Query: 120 QILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSA 179 + L IE+LL+R+ +LS G+RQRVA+ A+ +V L DEPL+ D L V+ L Sbjct: 114 EELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQD-PLGVE---SLIR 169 Query: 180 LHHRLGKTMIYVTHDQVE-AMTMADRIVVMRDGLIQQIG 217 L RL + V +V + A + ++ DG +Q+G Sbjct: 170 LLRRLDVEGVVVAEHRVHYLLPAASSVYLVYDGRAKQLG 208 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 72.4 bits (176), Expect = 2e-14 Identities = 59/225 (26%), Positives = 117/225 (52%), Gaps = 17/225 (7%) Query: 4 VELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLE--DITEGDL 61 +E+K +T G KV K + ++ GE ++GP+G GK++ +I G E ++ EGD+ Sbjct: 3 LEVKGLTAKIGEKVVLNK-VDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDI 61 Query: 62 FIDGARMNDVPPKDRDIAMVFQNYALYPHMS---------VYDNMAFGLKIRKFPKE-EI 111 +DG + ++PP++R + +F P + + N G + P + +I Sbjct: 62 LLDGESIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKI 121 Query: 112 DQRVHKAAQILDIE-ELLERKPKE-LSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKL 169 +R+++ A L ++ E+L R+ SGG+++R + +A++ +PK+ + DEP S LD Sbjct: 122 VKRMYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDID- 180 Query: 170 RVQMRAELSALHHRLGKTMIYVTH-DQVEAMTMADRIVVMRDGLI 213 +++ AE G+ ++ +TH ++ DR+ V+ G + Sbjct: 181 GLKIVAEFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGSV 225 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 72.0 bits (175), Expect = 2e-14 Identities = 54/211 (25%), Positives = 106/211 (50%), Gaps = 15/211 (7%) Query: 20 VKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFIDGARMNDVPP------ 73 ++ ++SV+ GE VL G +G GKTT+LR++ GL G+ AR+ V P Sbjct: 30 LRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGE-----ARVLGVDPWGGGFE 84 Query: 74 -KDRDIAMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHKAAQILDI-EELLERK 131 ++ + ++ ++Y ++ +N+ F ++ ++++ V A + E L R+ Sbjct: 85 RVKGEVGYLPEDASVYERLTGMENILFYARLYS-GWRDVEELVENAVFYSGLSREDLARR 143 Query: 132 PKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSALHHRLGKTMIYV 191 S G ++R+ +G ++ +P++ + DEP S +D +++ L L R G+ ++ Sbjct: 144 AGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGL-SREGRAILVT 202 Query: 192 THDQVEAMTMADRIVVMRDGLIQQIGTPLQL 222 THD A +ADR+ ++ G G P +L Sbjct: 203 THDLALAEEIADRVTIIHGGSTVASGPPYRL 233 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 68.6 bits (166), Expect = 2e-13 Identities = 61/267 (22%), Positives = 119/267 (44%), Gaps = 19/267 (7%) Query: 4 VELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFI 63 +E++ + K YG V A++ + SV GE +GP+G GKTTT+R++ G T G + Sbjct: 5 IEVEGLVKRYGS-VEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARV 63 Query: 64 DGARMNDVPPKD--RDIAMVFQNYALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHKAAQI 121 G + + R + V + Y +S + + ++ + + + +A + Sbjct: 64 FGVELYNPGASGVRRRVGYVPGEFEFYGGVSGGRMLDYWCRLVGGCSRGVVRELLEAFPL 123 Query: 122 LDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSALH 181 LER S G +Q +A+ A EP + + DEP + LD R ++ + Sbjct: 124 -----PLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRV-LDFVRSK 177 Query: 182 HRLGKTMIYVTHDQVEAMTMADRIVVMRDGL---IQQIGTPLQLYNHPVNLFVAGFIGSP 238 R G T+ + +H E +ADR+ ++R G+ ++ + + L+ V V+ Sbjct: 178 AREGVTVFFSSHVLSEVQRVADRVGLLRSGVLVALEDVSSLLRKSGKVVKARVS------ 231 Query: 239 PMNFISSTIREEGAHLVADEGDFQIIV 265 N + +G ++ G+ +++V Sbjct: 232 -KNLSPDRLAVDGVRVIRSNGELELVV 257 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 67.8 bits (164), Expect = 4e-13 Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 17/183 (9%) Query: 30 GEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFIDGARMNDVPPKDRDIAMVFQNYALYP 89 GE + + GP+G GKTT +R +AG EG ++ P D+ + ++ + P Sbjct: 383 GEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVY----------PYVEDLRVSYKPQYISP 432 Query: 90 HMSVYDNMAFGLKIRK----FPKEEIDQRVHKAAQILDIEELLERKPKELSGGQRQRVAV 145 + LK P ++ + K ++ ++LLER+ + LSGG+ Q+VAV Sbjct: 433 ESLPDATVEQVLKAANPAILAPGSWLNLELVKRMRL---DKLLERRVRTLSGGELQKVAV 489 Query: 146 GRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSALHHRLGKTMIYVTHDQVEAMTMADRI 205 A+ RE V+L DEP + LD + RV + + + + V HD + ++DRI Sbjct: 490 AAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALVVEHDLMILDYVSDRI 549 Query: 206 VVM 208 +++ Sbjct: 550 MLV 552 Score = 59.7 bits (143), Expect = 1e-10 Identities = 55/226 (24%), Positives = 108/226 (47%), Gaps = 28/226 (12%) Query: 29 DGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFIDGARMNDVPPKDRDIAMVFQNYALY 88 +G+ V L+G +G GKTT LR++AG +L + R+ P+ +I F+ L Sbjct: 105 EGQVVGLLGRNGTGKTTALRILAG-------ELKPNLGRVEGGEPEWDEILKRFRGSELQ 157 Query: 89 PHM-SVYDN---MAFGLKIRKFPKEEIDQRVH-------------KAAQILDIEELLERK 131 + + D +A ++ + + RV + A+ + ++++ +R Sbjct: 158 TYFRKLVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGVALELAEQVGLDKVFDRD 217 Query: 132 PKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSALHHRLGKTMIYV 191 ++LSGG+ Q++ + + R+ V++FDEP S LD + R++M A L A R G ++ V Sbjct: 218 VRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRM-ARLIAGAARPGAYVMVV 276 Query: 192 THDQVEAMTMADRIVVM--RDGLIQQIGTPLQLYNHPVNLFVAGFI 235 HD ++D + ++ G + P +N+F+ G++ Sbjct: 277 EHDLAVLDYVSDLVHILYGEPGAYGIVSKPYST-REGINVFLQGYL 321 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 65.9 bits (159), Expect = 2e-12 Identities = 61/222 (27%), Positives = 113/222 (50%), Gaps = 23/222 (10%) Query: 2 ATVELKNVTKVYGGKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDL 61 A + L+NV K+ GG+ ++ ++++ GE VV+ G +G GKTT LR+ AGL + + G + Sbjct: 3 ALLRLENVWKMLGGR-WVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRV 61 Query: 62 FIDGARMNDVPPKDRDIAMVFQNYALYPHMSVYDNMAF-----GLKIRKFPKEEIDQRVH 116 R P+ + V +Y ++V++N+ F G + +P Sbjct: 62 SWGCPR----GPRGC-VGYVGHTPMVYGDLTVWENVEFFSSLHGGSLGDYPLAA------ 110 Query: 117 KAAQILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAE 176 +A ++L +E+ +LS G R+R+ V RA++ EP++ L DE + LD + A Sbjct: 111 EAWRLLGLEKYGSHLASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLD---QGASEAL 167 Query: 177 LSALHHRLGKTM-IYVTHDQVEA--MTMADRIVVMRDGLIQQ 215 L LG+ + + +T +E + +A R+ ++DGL+ + Sbjct: 168 SRLLRLALGEGLALLMTTPLLEPRYLGLASRVYTLQDGLLAE 209 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 62.4 bits (150), Expect = 2e-11 Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 20/205 (9%) Query: 15 GKVTAVKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFIDGARMNDVPPK 74 G+ A ++ + G VL GP+G GKTT L+ I GL + G++ ++G V P+ Sbjct: 15 GQRYAYRNVEFTFTSGILGVL-GPNGAGKTTLLKTILGLVKPSAGEILVEG-----VNPR 68 Query: 75 DRDIAMVFQNYALYPHMSVY----------DNMAFGLKIRKFPKEEIDQRVHKAAQILDI 124 + P + V + +A ++ + E R +A +++ + Sbjct: 69 SPGFEKLLPRIGYVPELPVVPLWTTPCILLETLA---RLEGYTSVEARVRAREALEVVGL 125 Query: 125 EELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSALHHRL 184 E +LS G R+RV V +A + E ++ + DEP S LD + ++R EL R Sbjct: 126 AGECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVR-ELLRTVARE 184 Query: 185 GKTMIYVTHDQVEAMTMADRIVVMR 209 G T+I +H E +A ++V++ Sbjct: 185 GATVIVSSHILRELEDIATHVLVLK 209 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 52.4 bits (124), Expect = 2e-08 Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 24/201 (11%) Query: 5 ELKNVTKVYGGKVTAV-----KDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEG 59 EL++V + +G + V KD NI+V G +VG SG GKTT LRMI G G Sbjct: 436 ELQDVLRAFGAERRVVERYVLKDVNITVNPGSVAAVVGASGAGKTTLLRMILGKALGIGG 495 Query: 60 DLFIDGARMNDVPPKDRDIAMV-------FQNYALYPHMSVYDNMAFGLKIRKFPKEEID 112 + + + + +P + A++ F L H++ G + + Sbjct: 496 EGYRPDSGVVKIPTNTKAAALLPGELEPSFGGETLLEHVASKLGDP-GAAVEVLSSVGLG 554 Query: 113 QRVHKAAQILDIEELLERKPKELSGGQRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQ 172 + A ELS GQ++R + + P + + DE +++LD + Sbjct: 555 DAIFFRASF-----------GELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLTARR 603 Query: 173 MRAELSALHHRLGKTMIYVTH 193 + +L L G T+I T+ Sbjct: 604 IARKLGKLARSKGITLIVSTN 624 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 49.3 bits (116), Expect = 1e-07 Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 25/199 (12%) Query: 20 VKDANISVEDGEFVVLVGPSGCGKTTTLRMIAGLEDITEGDLFIDGARMNDVPPKDRDIA 79 ++D +S+ G +L G +G GKTT L++ A L G ++G R + Sbjct: 7 LRDVTLSIPRGVTAIL-GANGSGKTTLLKLAARLLKPDRGS--VEGPRR---------VG 54 Query: 80 MVFQN-YALYPHMSVYDNMAFGLKIRKFPKEEIDQRVHKAAQILDIEELLERKPKELSGG 138 QN Y + +V +++A R K + +E ER P LS G Sbjct: 55 AALQNPYLGFLGPTVAEDLARTAGGRG--------EALKLLREAGLEYASERSPYTLSMG 106 Query: 139 QRQRVAVGRAIVREPKVFLFDEPLSNLDAKLRVQMRAELSALHHRLGKTMIYVTHDQVEA 198 + + ++V AI P+ + DEP S LD + L++L RLG ++ HD A Sbjct: 107 EARILSVLMAISWGPEAVVIDEPTSGLDG----SGKRWLASLIARLGVPVLVAGHDIDFA 162 Query: 199 MTMADRIVVMRDGLIQQIG 217 +A V++RDG ++ G Sbjct: 163 AAVAGWAVILRDGRVRVSG 181 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 362,031 Number of Sequences: 1700 Number of extensions: 16080 Number of successful extensions: 183 Number of sequences better than 1.0e-04: 41 Number of HSP's better than 0.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 84 Number of HSP's gapped (non-prelim): 49 length of query: 365 length of database: 492,079 effective HSP length: 78 effective length of query: 287 effective length of database: 359,479 effective search space: 103170473 effective search space used: 103170473 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717914|ref|YP_003873446.1| lipoprotein [Spirochaeta thermophila DSM 6192] (394 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 439,186 Number of Sequences: 1700 Number of extensions: 20673 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 0 length of query: 394 length of database: 492,079 effective HSP length: 79 effective length of query: 315 effective length of database: 357,779 effective search space: 112700385 effective search space used: 112700385 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717915|ref|YP_003873447.1| radical SAM protein [Spirochaeta thermophila DSM 6192] (318 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431496|ref|NP_148004.2| MiaB-like protein [Aeropyrum perni... 42 2e-05 >gi|118431496|ref|NP_148004.2| MiaB-like protein [Aeropyrum pernix K1] Length = 450 Score = 42.4 bits (98), Expect = 2e-05 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 14/185 (7%) Query: 47 CAFCDVEGSRAPYLG-DVRGLEEQVRRA--KGFLKARYGASRFLLYFQAYTNTYGPVEEL 103 C+FC + +R R + E+VR A KG + R + +Y L Sbjct: 168 CSFCITKVARRQVRSYSPRVIVERVREAVEKGAREIRLTGTDVAVYGVDLPGK----PNL 223 Query: 104 RRVYEAGLAADEGEWVGLIVSTRPDCLPDEVLDLLASYKARGLEVWVELGLQSAFDETLR 163 + A L EG++ + PD + + LL Y+ + + L +QS DE L+ Sbjct: 224 ADLVAAILEKVEGDYRIRVGMMTPDQVEPYLDSLLDVYRDERVYKYFHLPVQSGDDEVLK 283 Query: 164 RIRRGHTVAQWE--DXXXXXXXXXXXXXXXXIAGLPGEGREEFWESARFVAESGVEGIKF 221 ++R +TV++++ I G PGE E FW + R V E ++F Sbjct: 284 IMKRNYTVSEYKAIHRRIKSRFPDAMIATDIIVGHPGETWEAFWNTVRLVEE-----LRF 338 Query: 222 HDLHL 226 +HL Sbjct: 339 EKVHL 343 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 358,045 Number of Sequences: 1700 Number of extensions: 16688 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 1 length of query: 318 length of database: 492,079 effective HSP length: 77 effective length of query: 241 effective length of database: 361,179 effective search space: 87044139 effective search space used: 87044139 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717916|ref|YP_003873448.1| methyl-accepting chemotaxis protein [Spirochaeta thermophila DSM 6192] (568 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.134 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 466,181 Number of Sequences: 1700 Number of extensions: 18470 Number of successful extensions: 129 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 129 Number of HSP's gapped (non-prelim): 0 length of query: 568 length of database: 492,079 effective HSP length: 82 effective length of query: 486 effective length of database: 352,679 effective search space: 171401994 effective search space used: 171401994 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717917|ref|YP_003873449.1| aminotransferase [Spirochaeta thermophila DSM 6192] (430 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431794|ref|NP_148487.2| aspartate aminotransferase [Aeropy... 57 7e-10 gi|118431147|ref|NP_147407.2| aspartate aminotransferase [Aeropy... 49 2e-07 >gi|118431794|ref|NP_148487.2| aspartate aminotransferase [Aeropyrum pernix K1] Length = 405 Score = 57.4 bits (137), Expect = 7e-10 Identities = 87/349 (24%), Positives = 150/349 (42%), Gaps = 59/349 (16%) Query: 85 YAPTPGDPELRKL--WQQEILRKNPEVPLDRISLPMVTSGLTGALSQVADLFVNPHDHVL 142 Y T G PELR+ W R +V + + + T+G A+ L++ P D V+ Sbjct: 70 YTETAGIPELREAIAWYLNS-RYGADVSPEEV---IATTGAKTAIFLGMALYLRPGDEVI 125 Query: 143 VSD---FFWGNYRLLFEGRREAQLVTYPLFTEEG---SLNLEAMERTLREIPAKKAVLVL 196 + D + + LF R V P+ E G ++E +ER + E K ++V+ Sbjct: 126 IPDPSYYAYAQVAKLFGARP----VYVPMKFEPGLGFRFDIEGIERAVSE---KTRMIVV 178 Query: 197 NFPNNPTGYTPTVDEAQAMAGLLARCAEEKDLLVVCDDAYFGLFYEEGIYPHSLFNLLAT 256 N P+NPTG D+ +A+ + A + L+++ D+ Y Y E + +L L Sbjct: 179 NNPHNPTGSVFPPDQVEAIHDI----ARRRGLIILADEIYDNFLYTEKPFKSTL--SLPD 232 Query: 257 AHPNLLAVKVDGPTKELYVWGFRIGFLTFGSPVLTAAQFDALNQKLAGSLRATV-SNSNR 315 NL V V+G +K + G+R+G++ V+ A L T+ S Sbjct: 233 WRENL--VYVNGFSKTFSMTGWRLGYVVLRREVIPKAL----------DLAVTIYSCPPS 280 Query: 316 LAQSLLKRALTSAHTPSELAKWADLLKARYQKTRQILSRMGDDVPLVPQPFNSGYFMCF- 374 +AQ AL P + + + ++R + ILS+ P +P+ G F F Sbjct: 281 IAQKAGVAALRGDWGP--VREMVEEFRSRARILYDILSQAEGIEPYLPE----GAFYMFP 334 Query: 375 ------KTRGIDAEALRQTLL-EKGIGTI-------SLGRDVLRVTFAS 409 + G+ E L + LL G+ + S+GR+ +R++FA+ Sbjct: 335 RVAGLLRKTGLSVEQLAEKLLYSYGVLVLPGTSFPESVGREHVRLSFAT 383 >gi|118431147|ref|NP_147407.2| aspartate aminotransferase [Aeropyrum pernix K1] Length = 401 Score = 49.3 bits (116), Expect = 2e-07 Identities = 57/208 (27%), Positives = 100/208 (48%), Gaps = 28/208 (13%) Query: 82 IVSYAPTPGDPELRKLWQQEILRKN-PEVPLDRISLPMVTSGLTGALSQVADLFVNPHDH 140 + SY PTPG ++R+ +++ P + D I +VT+G A+ + P D Sbjct: 66 LYSYTPTPGYADVREAIAEDLAALGGPRMEPDDI---LVTAGGQEAMFATLSTILEPGDK 122 Query: 141 VLVSDFFWGNYRLLFE--GRREAQLVTYPLFTEEGSLNLEAMERTLREIPAK--KAVLVL 196 V++ D + YR + E G R + P SL + E L+E + KAV+++ Sbjct: 123 VILMDPTYFGYRPIVEYLGGRVEWVRAPP------SLGFQPDEERLKEAFTRDVKAVVLV 176 Query: 197 NFPNNPTGYTPTVDEAQAMAGLLARCAEEKDLLVVCDDAYFGLFYE-EGIYPHSLFNLLA 255 + P+NPTG + + A+ +A L A + +V D+AY L +E E +Y + L Sbjct: 177 S-PDNPTGRLLSTESAKLVADL----AVDTGAWIVYDEAYKTLVFEGEHVYLYKL----- 226 Query: 256 TAHPNLLAVKVDGPTKELYVWGFRIGFL 283 A N +++ +K+ G+R+G+L Sbjct: 227 -APDNTISINTF--SKDPGFPGWRLGYL 251 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 418,313 Number of Sequences: 1700 Number of extensions: 18558 Number of successful extensions: 80 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 78 Number of HSP's gapped (non-prelim): 3 length of query: 430 length of database: 492,079 effective HSP length: 79 effective length of query: 351 effective length of database: 357,779 effective search space: 125580429 effective search space used: 125580429 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717918|ref|YP_003873450.1| iron-sulfur protein [Spirochaeta thermophila DSM 6192] (353 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 341,077 Number of Sequences: 1700 Number of extensions: 13813 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 0 length of query: 353 length of database: 492,079 effective HSP length: 78 effective length of query: 275 effective length of database: 359,479 effective search space: 98856725 effective search space used: 98856725 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717919|ref|YP_003873451.1| hypothetical protein STHERM_c02030 [Spirochaeta thermophila DSM 6192] (524 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 512,915 Number of Sequences: 1700 Number of extensions: 22844 Number of successful extensions: 107 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107 Number of HSP's gapped (non-prelim): 0 length of query: 524 length of database: 492,079 effective HSP length: 81 effective length of query: 443 effective length of database: 354,379 effective search space: 156989897 effective search space used: 156989897 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717920|ref|YP_003873452.1| hypothetical protein STHERM_c02050 [Spirochaeta thermophila DSM 6192] (388 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 403,730 Number of Sequences: 1700 Number of extensions: 17934 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 388 length of database: 492,079 effective HSP length: 79 effective length of query: 309 effective length of database: 357,779 effective search space: 110553711 effective search space used: 110553711 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717921|ref|YP_003873453.1| outer membrane protein involved in lipoprotein sorting [Spirochaeta thermophila DSM 6192] (246 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 218,712 Number of Sequences: 1700 Number of extensions: 9178 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 246 length of database: 492,079 effective HSP length: 74 effective length of query: 172 effective length of database: 366,279 effective search space: 62999988 effective search space used: 62999988 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717922|ref|YP_003873454.1| permease involved in lipoprotein release [Spirochaeta thermophila DSM 6192] (417 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.140 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 352,418 Number of Sequences: 1700 Number of extensions: 14104 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 417 length of database: 492,079 effective HSP length: 79 effective length of query: 338 effective length of database: 357,779 effective search space: 120929302 effective search space used: 120929302 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717923|ref|YP_003873455.1| permease, involved in lipoprotein release [Spirochaeta thermophila DSM 6192] (421 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 464,013 Number of Sequences: 1700 Number of extensions: 23050 Number of successful extensions: 92 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92 Number of HSP's gapped (non-prelim): 0 length of query: 421 length of database: 492,079 effective HSP length: 79 effective length of query: 342 effective length of database: 357,779 effective search space: 122360418 effective search space used: 122360418 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717924|ref|YP_003873456.1| ATP-binding/permease MacB [Spirochaeta thermophila DSM 6192] (229 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 174 2e-45 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 165 8e-43 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 150 2e-38 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 150 3e-38 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 137 3e-34 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 135 1e-33 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 133 4e-33 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 113 5e-27 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 110 2e-26 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 108 9e-26 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 104 2e-24 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 103 4e-24 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 102 1e-23 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 100 3e-23 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 100 4e-23 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 100 5e-23 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 99 1e-22 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 99 1e-22 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 96 8e-22 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 94 4e-21 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 91 2e-20 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 91 2e-20 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 90 6e-20 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 89 7e-20 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 89 9e-20 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 88 2e-19 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 86 1e-18 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 84 3e-18 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 84 4e-18 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 76 6e-16 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 76 6e-16 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 75 1e-15 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 73 5e-15 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 69 1e-13 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 67 5e-13 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 64 4e-12 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 63 7e-12 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 62 9e-12 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 59 8e-11 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 58 2e-10 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 55 2e-09 gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad5... 42 1e-05 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 174 bits (441), Expect = 2e-45 Identities = 101/220 (45%), Positives = 137/220 (62%), Gaps = 5/220 (2%) Query: 4 VELSGVKKDYHT-GETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEG 62 V + GV K Y + GE +V ALR V L V GE LAI GPSGSGKTTLLNI+ +D + G Sbjct: 11 VVVEGVVKIYESRGERIV-ALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAG 69 Query: 63 TVIIDHTDIPSLDPKERARFRRGKIGFVFQTFNLIPVLTAYENVAFALDLLDLPEREVRE 122 VI+D ++ S +E RFR ++G+VFQ NLIP LTA EN+ + L + R Sbjct: 70 RVIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIPTLTALENILLPMALAG---KANRL 126 Query: 123 RTMQILKDVGLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAI 182 R ++L+ VGL G E R P +LSGG+QQR+A+A AL +P +++ADEPT LD TGE I Sbjct: 127 RGQELLRRVGLGGKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERI 186 Query: 183 VHLMQELNEKYGTTFIFSTHDKMVMDHARRLVLLHDGLIQ 222 V ++ E G T + +THD V A R+ ++ DG ++ Sbjct: 187 VRILLEEAHSRGKTVVLTTHDPRVARMADRVAVIEDGRLR 226 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 165 bits (418), Expect = 8e-43 Identities = 95/224 (42%), Positives = 139/224 (62%), Gaps = 11/224 (4%) Query: 1 MAIVELSGVKKDYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSAD 60 MA V+L GV K + V A+R V+L +E EF++I GPSGSGKTTLL ++ + Sbjct: 1 MASVKLEGVWKVFGN----VVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPS 56 Query: 61 EGTVIIDHTDIPSLDPKERARFRRGKIGFVFQTFNLIPVLTAYENVAFALDLLDLPEREV 120 G + + D+ L P +R IG VFQ + L P +T YEN+AF L L + E + Sbjct: 57 RGRIYFNDVDVTDLPPNKR------NIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAI 110 Query: 121 RERTMQILKDVGLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGE 180 +E+ + + K +G+EG+ DR PAQLSGGQQQRVA+ARALVK P ++L DEP +NLD+ Sbjct: 111 KEKVLSVAKLLGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRI 170 Query: 181 AIVHLMQELNEKYGTTFIFSTHDKM-VMDHARRLVLLHDGLIQE 223 I +++L ++ G T I+ THD+ + A R+ ++ G+IQ+ Sbjct: 171 KIRSELKKLQKELGITAIYVTHDQSEALAMADRIAIIASGVIQQ 214 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 150 bits (380), Expect = 2e-38 Identities = 89/224 (39%), Positives = 135/224 (60%), Gaps = 11/224 (4%) Query: 1 MAIVELSGVKKDYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSAD 60 MA V L G+ K + G+TV AL+G+DL+++ GE + + GPSG GKTT L IV L+ D Sbjct: 1 MAGVRLEGIVKRF--GKTV--ALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPD 56 Query: 61 EGTVIIDHTDIPSLDPKERARFRRGKIGFVFQTFNLIPVLTAYENVAFALDLLDLPEREV 120 G V D D+ L PK+R + VFQ++ L P + ++N+AF L + LP E+ Sbjct: 57 AGRVYFDGRDVTGLPPKDR------NVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEI 110 Query: 121 RERTMQILKDVGLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGE 180 R + + ++ + DR P QLSGGQQQRVA+ARA+V P ++L DEP +NLD+ Sbjct: 111 VRRVRWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRI 170 Query: 181 AIVHLMQELNEKYGTTFIFSTHDKM-VMDHARRLVLLHDGLIQE 223 + +++L + G T I+ THD++ M R+V+++ G IQ+ Sbjct: 171 KMRSEIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQ 214 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 150 bits (379), Expect = 3e-38 Identities = 86/226 (38%), Positives = 134/226 (59%), Gaps = 15/226 (6%) Query: 1 MAIVELSGVKKDYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSAD 60 MA + L GV K + V H VDL ++ GEF + GPSG GKTT L ++ L+ D Sbjct: 1 MAEIRLEGVVKRFGKVVAVDH----VDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPD 56 Query: 61 EGTVIIDHTDIPSLDPKERARFRRGKIGFVFQTFNLIPVLTAYENVAFALDL----LDLP 116 EG ++ID D+ DPK+R + VFQ + L P ++ ++N+AF L L + L Sbjct: 57 EGRILIDGEDVTFKDPKDR------NVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLT 110 Query: 117 EREVRERTMQILKDVGLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDS 176 + ++R R +++ K + +E + DR+P QLSGGQQQRVA+ARALV+ P + L DEP +NLD+ Sbjct: 111 KDDIRRRVIEVAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDA 170 Query: 177 ETGEAIVHLMQELNEKYGTTFIFSTHDKM-VMDHARRLVLLHDGLI 221 A+ +++L + T ++ THD+ M A R+ +++ G + Sbjct: 171 LLRLAMRAELKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRV 216 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 137 bits (344), Expect = 3e-34 Identities = 82/224 (36%), Positives = 130/224 (58%), Gaps = 8/224 (3%) Query: 3 IVELSGVKKDYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEG 62 ++E+ G+ Y +GE V L+GVD+ + GE L I GPSGSGK+TLL + L D G Sbjct: 4 LLEVRGLVVSY-SGEKV---LKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSG 59 Query: 63 TVIIDHTDIPSLDPKERARFRRGKIGFVFQTFNLIPVLTAYENVAFALD-LLDLPEREVR 121 +++ D+ L + RR KIG++ Q+++L P +T N+ + L+ L L R+ Sbjct: 60 SIVFRGVDVTRLSGSQLRMVRR-KIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAE 118 Query: 122 ERTMQILKDVGLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEA 181 ER ++ L +G+E + R PA+LSGGQQQR A+ARAL P ++L DEPT+ LD E+ Sbjct: 119 ERAVKYLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRAD 178 Query: 182 IVHLMQELNEKYGTTFIFSTHD-KMVMDHARRLVLLHDGLIQED 224 ++ + + G I TH+ + A R+ + DG+++E+ Sbjct: 179 VLEALFRV-ATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEE 221 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 135 bits (339), Expect = 1e-33 Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 11/224 (4%) Query: 1 MAIVELSGVKKDYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSAD 60 MA + L V K + G TV AL V L + GE + GPSG GKTT L ++ ++ D Sbjct: 1 MAGIRLESVTKRF--GNTV--ALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPD 56 Query: 61 EGTVIIDHTDIPSLDPKERARFRRGKIGFVFQTFNLIPVLTAYENVAFALDLLDLPEREV 120 EG V I D+ L P ER VFQ + L P + ++N+A+ L L LP E+ Sbjct: 57 EGRVYIGSRDVTMLKPYER------NTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEI 110 Query: 121 RERTMQILKDVGLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGE 180 R + + ++ + DR P QLSGGQQQRVA+ARA+V P ++L DEP +NLD+ Sbjct: 111 VRRVRWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRL 170 Query: 181 AIVHLMQELNEKYGTTFIFSTHD-KMVMDHARRLVLLHDGLIQE 223 + + L ++ G T ++ THD + + + R+ +++ G +++ Sbjct: 171 KMREEIVRLQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQ 214 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 133 bits (334), Expect = 4e-33 Identities = 82/212 (38%), Positives = 112/212 (52%), Gaps = 10/212 (4%) Query: 14 HTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIIDHTDIPS 73 H V ALRGV A+ GPSG GKTT+L ++ L G V D Sbjct: 12 HASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFGGVDYTG 71 Query: 74 LDPKERARFRRGKIGFVFQTFNLIPVLTAYENVAFALDLLDLPEREVRERTMQILKDVGL 133 L P+ R+ +GFVFQ L P +T Y+NVAF L EVR + L+ VGL Sbjct: 72 LPPERRS------VGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWALETVGL 125 Query: 134 EGMED---RRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVHLMQELN 190 + RR LSGGQQQRVA+ARA+ P ++L DEP ++LD + + ++ ++ L Sbjct: 126 TPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQ 185 Query: 191 EKYGTTFIFSTHDKM-VMDHARRLVLLHDGLI 221 K G+T I+ THD+ M+ A LV++ DG I Sbjct: 186 RKLGSTMIYVTHDQWEAMELADTLVIMRDGRI 217 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 113 bits (282), Expect = 5e-27 Identities = 80/231 (34%), Positives = 128/231 (55%), Gaps = 10/231 (4%) Query: 3 IVELSGVKKDYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLL-NIVGTLDSADE 61 ++ + +K ++T +V A+ GV + GE L IAG SGSGK+TL +I+G + Sbjct: 5 LLVVEDLKTYFYTLRGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGR 64 Query: 62 ---GTVIIDHTDIPSLDPKE-RARFRRGKIGFVFQ-TFNLI-PVLTAYENVAFALDL-LD 114 G ++ID D+ S+ E R + R K+ VFQ N++ PV T + L + Sbjct: 65 IVGGRIMIDGMDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRG 124 Query: 115 LPEREVRERTMQILKDVGLE-GMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTAN 173 + E R+R ++L+ VGL + DR P +LSGGQ+QRV IA AL P +V+ADEPT Sbjct: 125 VGRHEARQRVYELLESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTA 184 Query: 174 LDSETGEAIVHLMQELNEKYGTTFIFSTHD-KMVMDHARRLVLLHDGLIQE 223 LD I++L+++L + + I THD ++ + A +++++ G I E Sbjct: 185 LDVVVQAQILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAE 235 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 110 bits (276), Expect = 2e-26 Identities = 83/235 (35%), Positives = 126/235 (53%), Gaps = 14/235 (5%) Query: 1 MAIVELSGVKKDYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSAD 60 MA++++ +K Y+T +V A+ GV L V GE+++I G SGSGK+TL + L Sbjct: 1 MAVLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPP 60 Query: 61 E----GTVIIDHTDIPSLDPKERARFRRGKIGFVFQ--TFNLIPVLTAYENVAFALDLLD 114 G ++ D+ SL +E R+R +IG VFQ T L P T +A +L Sbjct: 61 GRIVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHG 120 Query: 115 LPEREVRERTM--QILKDVGLEGMEDRR---PAQLSGGQQQRVAIARALVKNPILVLADE 169 L +M L+ VG+ DR P QLSGGQ+QRVAIA A+ P +++ADE Sbjct: 121 LASSGSEAESMAGDALELVGIP--RDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADE 178 Query: 170 PTANLDSETGEAIVHLMQELNEKYGTTFIFSTHD-KMVMDHARRLVLLHDGLIQE 223 PT LD I+ LM++L E+ G T + THD + +++ R+ +++ G + E Sbjct: 179 PTTALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVE 233 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 108 bits (271), Expect = 9e-26 Identities = 80/216 (37%), Positives = 117/216 (54%), Gaps = 12/216 (5%) Query: 17 ETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIIDHTDIPSLDP 76 + VV A+ GVDL + GE LAI G SG GKTTL + ++ +G + L P Sbjct: 32 DAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGE---LLTP 88 Query: 77 KERARFRR--GKIGFVFQT--FNLIPVLTAYENVAFALDLLDLPE-REVRERTMQILKDV 131 AR RR K+ VFQ +L P++ + VA L + L E R R +++L+ V Sbjct: 89 HRLARDRRLRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETV 148 Query: 132 GLEGMED---RRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVHLMQE 188 GL + R+P QLSGGQ+QRVAIAR LV P +++ADEP + +D +I+ L+ + Sbjct: 149 GLTPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMD 208 Query: 189 LNEKYGTTFIFSTHDKMVMDH-ARRLVLLHDGLIQE 223 + + G T + THD V A R+ +++ G I E Sbjct: 209 YHRRTGATIVLITHDIAVARAVADRIAVMYLGKIVE 244 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 104 bits (260), Expect = 2e-24 Identities = 76/215 (35%), Positives = 116/215 (53%), Gaps = 16/215 (7%) Query: 21 HALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTL-----DSADEGTVIIDHTDIPSLD 75 H L+G+ + +PG AI GPSGSGK+TL+ ++ L + EG V I++ ++ D Sbjct: 19 HILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVMKED 78 Query: 76 PKERARFRRGKIGFVFQTFNLIPVLTAYENVAFALDLLDLPE--REVRERTMQILKDVGL 133 P R+ G VFQ N P +T YENVA L L + +E+ E LK L Sbjct: 79 PYNIRRYT----GMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEIVEWALKMAHL 134 Query: 134 -EGMEDRR---PAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVHLMQEL 189 + ++DR P QLSGGQ+QR+++ARAL P ++L DEPTAN+D + I + E Sbjct: 135 WDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEY 194 Query: 190 NEKYGTTFIFSTH-DKMVMDHARRLVLLHDGLIQE 223 ++ T I TH + + +++ L++G + E Sbjct: 195 AKEEMATVIIVTHTPQQAARISDQILFLYEGRVIE 229 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 103 bits (257), Expect = 4e-24 Identities = 72/201 (35%), Positives = 102/201 (50%), Gaps = 5/201 (2%) Query: 20 VHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIIDHTDIPSLDPKER 79 + AL+GV V GE + + GP+G+GKTTL NI+ + D G VI DI R Sbjct: 17 IEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYKGVDITGWPAYRR 76 Query: 80 ARFRRGKIGFVFQTFNLIPVLTAYENVAFALDLLDLPEREVRERTMQILKDVGLEGMEDR 139 +R I FQ + LT NV L RE RER M+ + VGL G ED Sbjct: 77 SR---AGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAMEAIDMVGLAGKEDI 133 Query: 140 RPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVHLMQELNEKYGTTFIF 199 L+ +++R+ +ARAL P L+L DE A L + +V+ + E++ K G T I Sbjct: 134 LAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLEIS-KRGITIIM 192 Query: 200 STH-DKMVMDHARRLVLLHDG 219 H + VM+ A R+++LH G Sbjct: 193 VEHVMRAVMNFAERVIVLHFG 213 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 102 bits (253), Expect = 1e-23 Identities = 73/203 (35%), Positives = 108/203 (53%), Gaps = 20/203 (9%) Query: 3 IVELSGVKKDYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEG 62 ++E GV K Y G+ V L VDL+V GE + + GP+G+GKTTL+ + L D G Sbjct: 4 VLEARGVVKKYR-GQPV---LDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGG 59 Query: 63 TVIIDHTDIPSLDPKERARFRRGKIGFVFQTFNL---IPVLTAYENVAFALDLLDLPERE 119 V+++ LDP R R G +G VF+ NL +PV+ E+ A + Sbjct: 60 RVLLN-----GLDPWREPRAREG-VGVVFERPNLPSSMPVVEFLESAAAIIG-------S 106 Query: 120 VRERTMQILKDVGLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETG 179 R ++ GLEG E + QLS G +QR AIA AL+ P ++ADEPT+NLD Sbjct: 107 SPSRVDWAIRAAGLEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLER 166 Query: 180 EAIVHLMQELNEKYGTTFIFSTH 202 ++ L+ LN ++G + + S+H Sbjct: 167 REVLRLLARLNREHGLSLLVSSH 189 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 100 bits (249), Expect = 3e-23 Identities = 81/245 (33%), Positives = 121/245 (49%), Gaps = 42/245 (17%) Query: 20 VHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIID------------ 67 V A+ GV L ++ GE L + G SGSGKTTL + L G V ID Sbjct: 27 VKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELEEAVSI 86 Query: 68 -----------HTDIPS------------LDPKERARFRRGKIGFVFQT--FNLIPVLTA 102 DI +D +FRR K+ V Q +L P + Sbjct: 87 YEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRR-KVQMVQQDPYSSLNPRMKV 145 Query: 103 YENVAFALDL--LDLPEREVRERTMQILKDVGL-EGMEDRRPAQLSGGQQQRVAIARALV 159 E + + + ++ V+ R +++L+ VGL + DR P +LSGGQ+QRVAIARAL Sbjct: 146 GEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIARALA 205 Query: 160 KNPILVLADEPTANLDSETGEAIVHLMQELNEKYGTTFIFSTHDKMVMDH-ARRLVLLHD 218 NP +++ DEPT+ LD I+ L++EL +KYG T++ THD V+ + + +V+++ Sbjct: 206 LNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMYS 265 Query: 219 GLIQE 223 G I E Sbjct: 266 GKIME 270 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 100 bits (248), Expect = 4e-23 Identities = 67/209 (32%), Positives = 108/209 (51%), Gaps = 9/209 (4%) Query: 3 IVELSGVKKDYHTGE-----TVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLD 57 +VE G+KK + V A+ V + + G+ L + G SGSGKTT ++ L+ Sbjct: 27 LVETVGLKKYFPVKSLFFTRAYVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLE 86 Query: 58 SADEGTVIIDHTDIPSLDPKERARFRRGKIGFVFQT--FNLIPVLTAYENVAFALDLLDL 115 G + D D+ L + FRR + +FQ +L P T + +A + + + Sbjct: 87 EPTGGRIFFDGIDVMKLRGRGLKEFRR-RAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGI 145 Query: 116 PEREVRERTMQILKDVGL-EGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANL 174 +++E + +L VGL E R P + SGGQ+QR+AIAR L P ++ DEPT+ L Sbjct: 146 KVGDLQEYIVSLLYQVGLNETHLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSAL 205 Query: 175 DSETGEAIVHLMQELNEKYGTTFIFSTHD 203 D I++L+++L KY T++F +HD Sbjct: 206 DVSVQAQILNLLKDLQRKYSLTYLFISHD 234 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 99.8 bits (247), Expect = 5e-23 Identities = 71/236 (30%), Positives = 123/236 (52%), Gaps = 18/236 (7%) Query: 3 IVELSGVKKDYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSA--- 59 ++ + + +Y+T + VV+AL GV+L V GE LAI G SG GK+TL + + + Sbjct: 5 VLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAV 64 Query: 60 -DEGTVIID-----HTDIPSLDPKERARFRRGKIGFVFQ--TFNLIPVLTAYENVAFALD 111 ++G++I++ D+ L E + R + +FQ + L PV + V D Sbjct: 65 IEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVT---D 121 Query: 112 LLDLPEREVRERTMQILKDVGLEGME---DRRPAQLSGGQQQRVAIARALVKNPILVLAD 168 + +R V + +ILK + + ++ P +LSGG +QR+ IA +L+ P +++AD Sbjct: 122 HVSGEKRRVEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIAD 181 Query: 169 EPTANLDSETGEAIVHLMQELNEKYGTTFIFSTHDKMV-MDHARRLVLLHDGLIQE 223 EPT LD I+ ++ L E+ TT I TH+ V + A R+ +++ G + E Sbjct: 182 EPTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVVE 237 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 98.6 bits (244), Expect = 1e-22 Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 12/205 (5%) Query: 4 VELSGVKKDYHTG-----ETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDS 58 VE + K+Y G + AL GVDL+V G ++ GP+G+GKTTL+ I+ TL Sbjct: 5 VEAEALVKEYRMGLLPWRARTIRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLL 64 Query: 59 ADEGTVIIDHTDIPSLDPKERARFRRGKIGFVFQTFN-LIPVLTAYENVAFALDLLDLPE 117 D G + D A R +IG V L L+ ++N+ F L +P Sbjct: 65 PDSGWA-----RVAGFDVVREANNVRSRIGVVLGGERALYWRLSGWDNLWFFSQLYGIPP 119 Query: 118 REVRERTMQILKDVGLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSE 177 RE + R ++L+ VGLE R S G +QR+ IAR L+ +P ++L DEPT LD + Sbjct: 120 REAKRRVKELLEIVGLEEWAHVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPK 179 Query: 178 TGEAIVHLMQELNEKYGTTFIFSTH 202 + +++ + + G T + +TH Sbjct: 180 AAREVRSIIRRI-VREGRTVLLTTH 203 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 98.6 bits (244), Expect = 1e-22 Identities = 68/197 (34%), Positives = 100/197 (50%), Gaps = 21/197 (10%) Query: 22 ALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIIDHTDIPSLDPKERAR 81 AL V+L++E G+ + GP+GSGKTTL+N++ D G V+ DI + P E + Sbjct: 21 ALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLFKGRDITGMSPHEIS- 79 Query: 82 FRRGKIGFV--FQTFNLIPVLTAYENVAFALD-------LLDLP-------EREVRERTM 125 K+G V FQ LT ENV A D L L E+ R Sbjct: 80 ----KLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWLGFEKRAAARAF 135 Query: 126 QILKDVGLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVHL 185 +IL VGL+ M DRR +LSGGQ + + IARA++K +++ DEP A ++ +I+ Sbjct: 136 EILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVNPRLAGSIMER 195 Query: 186 MQELNEKYGTTFIFSTH 202 ++ L + G TF+ H Sbjct: 196 IKYLAREKGITFLIIEH 212 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 95.9 bits (237), Expect = 8e-22 Identities = 66/217 (30%), Positives = 114/217 (52%), Gaps = 10/217 (4%) Query: 11 KDYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIIDHTD 70 +D G + L V L++ G I GP+G+GK+TLL + + +G V+ ++TD Sbjct: 9 EDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLFENTD 68 Query: 71 IPSLDPKERARFRRGKIG--FVFQTFNLIPVLTAYENVAFALDLLDLPEREVRERTMQIL 128 + + P +RA KIG F+FQ N+ LT YEN+ A DLPE R+R ++ Sbjct: 69 VTHMPPHDRA-----KIGMTFIFQLENIFRELTVYENLRLA--GYDLPEDVFRDRLEEVF 121 Query: 129 KDV-GLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVHLMQ 187 L+ ++ LSGG++Q +A+A +++ P + L DEPTA L + + ++ ++ Sbjct: 122 SMFPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVR 181 Query: 188 ELNEKYGTTFIFSTHDKMVMDHARRLVLLHDGLIQED 224 LN++ T + + K ++ + VL+ +G I D Sbjct: 182 ILNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFD 218 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 93.6 bits (231), Expect = 4e-21 Identities = 72/217 (33%), Positives = 112/217 (51%), Gaps = 11/217 (5%) Query: 4 VELSGVKKDYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGT 63 VE G++K + G T A+ GV V GE I GP+GSGKTTLL +V + G+ Sbjct: 5 VEARGLRKRFG-GRT---AVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGS 60 Query: 64 VIIDHTDIPSLDPKERARFRRGKIGFVFQTFNLIPVLTAYENVAFALDLLDLPEREVRER 123 V + D+ + R RG IGF Q + +T E + LL L R Sbjct: 61 VRVCGYDVWG----DGWREARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARRE 116 Query: 124 TMQILKDVGLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIV 183 ++L+ +G E + R A+LSGGQ++ + IA AL NP +V+ DEP + LD E++ Sbjct: 117 ARRVLEMLGFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLW 176 Query: 184 HLMQELNEKYGTTFIFSTHDKMVMD-HARRLVLLHDG 219 +++ + G T +FS+HD + + R++++H G Sbjct: 177 ASLRKAFK--GRTVLFSSHDPQEAEAESDRVLIMHRG 211 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 91.3 bits (225), Expect = 2e-20 Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 12/208 (5%) Query: 2 AIVELSGVKKDYHTGET---VVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDS 58 A++E G+ K + +G VV AL+GV V GE + GP+G+GKTT + I+ TL Sbjct: 4 AMIEARGLVKRFVSGRIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLD 63 Query: 59 ADEGTVIIDHTDIPSLDPKERARFRRGKIGFVFQT-FNLIPVLTAYENVAFALDLLDLPE 117 D G + D+ KER R+ +IG + LT EN+ + + +P+ Sbjct: 64 PDGGEARVAGFDV----VKERWEVRK-RIGVMLSVERGFYWKLTGRENLYYFGRIYGIPQ 118 Query: 118 REVRERTMQILKDVGLE--GMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLD 175 E++ R ++L VGL G D+ ++S G + R+ +AR L+K+P +++ DEPT LD Sbjct: 119 GELKSRIKEVLDLVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLD 178 Query: 176 SETGEAIVHLMQELNEKYGTTFIFSTHD 203 + I +++ L + G T +TH+ Sbjct: 179 PASARTIRGVIRSLASE-GRTIFITTHN 205 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 91.3 bits (225), Expect = 2e-20 Identities = 70/218 (32%), Positives = 101/218 (46%), Gaps = 19/218 (8%) Query: 20 VHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIIDHTDIPSLDPKER 79 V AL V ++V GE L I GP+G+GKT+LLN++ + G V DI L P +R Sbjct: 14 VTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDITGLKPHQR 73 Query: 80 ARFRRGKIGFVFQTFNLIPVLTAYENVAFAL------DLLDLP---------EREVRERT 124 + FQ L +T EN+ L +L+ E E RER Sbjct: 74 ITLGLSR---TFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWEVEARERA 130 Query: 125 MQILKDVGLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVH 184 ++ + L L G Q++V +A AL +NP +VL DEP A L E E IV Sbjct: 131 EHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEKEDIVR 190 Query: 185 LMQELNEKYGTTFIFSTHD-KMVMDHARRLVLLHDGLI 221 + E +E TT + HD ++V D R+V++ G + Sbjct: 191 AIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKV 228 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 89.7 bits (221), Expect = 6e-20 Identities = 72/230 (31%), Positives = 111/230 (48%), Gaps = 11/230 (4%) Query: 4 VELSGVKKDYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGT 63 V + G+ K Y G V AL VD + GE A+ G +G+GKTTL+ I+ G Sbjct: 13 VAMRGIVKVYPDG---VKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGE 69 Query: 64 VIIDHTDIPSLDPKERARFRRGKIGFVFQTFNLIPVLTAYENVAFALDLLDLPEREVRER 123 + + + P + R I V+Q F L+ +T EN+A L L L E R R Sbjct: 70 IYVWGRKVSWRGPWDAIR---NGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRR 126 Query: 124 TMQILKDVGLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIV 183 T++ + +GLE + A L G +QRV I +AL +++ DEPT+NL E + Sbjct: 127 TLETAERLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLF 186 Query: 184 HLMQELNEKYGTTFIFSTHD-KMVMDHARRLVLLHDGLIQ---EDIRRES 229 ++ L + G + ++ TH V+ A R+ +L G + ED+ R S Sbjct: 187 STLRLLKD-MGVSVVYITHKLGEVVRVADRVTVLRRGRVSAVIEDVGRTS 235 Score = 54.7 bits (130), Expect = 2e-09 Identities = 53/216 (24%), Positives = 99/216 (45%), Gaps = 14/216 (6%) Query: 20 VHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIIDHTDIP-SLDPKE 78 V +R V L+V GE + IAG +G+G+ L++ + L G++ + I SLD Sbjct: 275 VERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEVQGRRIEGSLD--- 331 Query: 79 RARFRRGKIGFVFQTFNLIPVL--TAYENVAF----ALDLLDLPEREVRERTMQILKDVG 132 F R G++ + + + EN+AF A L L + + ++++ Sbjct: 332 ---FYRAGGGYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRRSRLEDLFRRLVERFR 388 Query: 133 LEGMEDRRPA-QLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVHLMQELNE 191 L P +LSGG QQ+V + +++ L++A PT LD T + +L+ EL Sbjct: 389 LVARSPWTPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTSFVRNLLSELAR 448 Query: 192 KYGTTFIFSTHDKMVMDHARRLVLLHDGLIQEDIRR 227 + + ST +++ + R+ ++ G + + R Sbjct: 449 QGAGILLVSTDLDEILELSDRIYVMSGGRVTGVLER 484 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 89.4 bits (220), Expect = 7e-20 Identities = 76/236 (32%), Positives = 109/236 (46%), Gaps = 28/236 (11%) Query: 20 VHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVI----------IDHT 69 V A+ GV + GE + G SG GKTT + L A G V ++ Sbjct: 47 VKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERR 106 Query: 70 DIPSLD---------PKERARFRRGKIGFVFQT--FNLIPVLTAYENVAFALDLLDLPER 118 + SL P+ + + R ++ V+Q +L P T + L + + Sbjct: 107 GVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNA 166 Query: 119 EVRE----RTMQILKDVGLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANL 174 RE R ++ +K DR P QLSGGQ+QRVAIARA + NP LV+ADEP + L Sbjct: 167 REREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSML 226 Query: 175 DSETGEAIVHLMQELNEKYGTTFIFSTHDKMVMDH-ARRLVLLHDGLIQE--DIRR 227 D I+ L+ EK GT+ +F THD V + R+ +++ G I E D RR Sbjct: 227 DVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDARR 282 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 89.0 bits (219), Expect = 9e-20 Identities = 64/192 (33%), Positives = 94/192 (48%), Gaps = 15/192 (7%) Query: 12 DYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIIDHTDI 71 D + GE AL GV L+V GE +A+ G +G+GKTT L + L G++I DI Sbjct: 13 DVYYGE--FQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIWQGRDI 70 Query: 72 PSLDPKERARFRRGKIGFVFQTFNLIPVLTAYENVAFALDLLDLPEREVRERTMQILKDV 131 L +R I V + + P LT YEN+ A R +E L+ V Sbjct: 71 TGLPAFKRVE---EGISHVPEGRGIFPRLTVYENLRVAAST-----RRAKEHFQDSLEQV 122 Query: 132 G-----LEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVHLM 186 L+ + LSGG+QQ +AIARAL++ PIL++ DEP+ L + +++L Sbjct: 123 YTIFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLA 182 Query: 187 QELNEKYGTTFI 198 L E+ G T + Sbjct: 183 SRLREELGVTIL 194 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 87.8 bits (216), Expect = 2e-19 Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 10/201 (4%) Query: 2 AIVELSGVKKDYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADE 61 A+V + KDY A+ GV ++ GE ++ GP+G+GKTT + ++ TL Sbjct: 5 AMVVAEELVKDYGG----FRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTS 60 Query: 62 GTVIIDHTDIPSLDPKERARFRRGKIGFVFQTFNLIPVLTAYENVAFALDLLDLPEREVR 121 G I I +E RR IG V Q ++ ++NV L LP E R Sbjct: 61 GEAWIAGYSIV----REPGNVRR-VIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEAR 115 Query: 122 ERTMQILKDVGLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEA 181 ERT ++L + L RR A SGG ++++ IA +LV +P ++ DEPT LD + + Sbjct: 116 ERTREVLDYLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRS 175 Query: 182 IVHLMQELNEKYGTTFIFSTH 202 + +++L ++ T + +TH Sbjct: 176 LWRYIEDL-KRSAVTILLTTH 195 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 85.5 bits (210), Expect = 1e-18 Identities = 72/240 (30%), Positives = 117/240 (48%), Gaps = 19/240 (7%) Query: 3 IVELSGVKKDYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTT----LLNIVGTLDS 58 I+E+ +K ++T +V A+ V ++ GE + G +G GK+ L ++ Sbjct: 9 IIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGR 68 Query: 59 ADEGTVII-----DHTDIPSLDPKERARFRRGKIGFVFQ--TFNLIPVLTAYENVAFALD 111 EG + DI SLD KE R R +I ++FQ + L P+ T V + Sbjct: 69 IVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETM- 127 Query: 112 LLDLPEREVRE---RTMQILKDVGLEGMEDR---RPAQLSGGQQQRVAIARALVKNPILV 165 L R +RE R + +LK V + E R P +LSGG +QR I +L P L+ Sbjct: 128 LAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLL 187 Query: 166 LADEPTANLDSETGEAIVHLMQELNEKYGTTFIFSTHD-KMVMDHARRLVLLHDGLIQED 224 +ADEPT LD I+ L+ +L ++G T + TH+ +V ++ R+ +++ G I E+ Sbjct: 188 IADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEE 247 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 84.0 bits (206), Expect = 3e-18 Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 19/220 (8%) Query: 1 MAIVELSGVKKDYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSAD 60 M++V L V Y G V LRGV L+ G L +AGP+G GK+T+L + L + Sbjct: 1 MSVVRLRDVWYRYPGGGWV---LRGVSLEAPRGITL-LAGPTGGGKSTILRVAAGLATRI 56 Query: 61 EGTVIIDHTDIPSLDPKERARFRRGKIGFVFQTFNL-IPVLTAYENVAFALDLLDLPERE 119 G + + RGK V Q ++L I LT E + + + LP E Sbjct: 57 YGGYLRGEVEA------------RGKPVLVPQDYDLFILSLTPREELEYCYEASGLPPWE 104 Query: 120 VRERTMQILKDVGLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETG 179 R +++ +++G+E + DRR ++LS G++QRVAIA AL ++L DEP A D Sbjct: 105 ARREAVRLAEELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGV 164 Query: 180 EAIVHLMQELNEKYGTTFIFSTHDKMVMDHARRLVLLHDG 219 E+++ L++ L+ + H ++ A + L++DG Sbjct: 165 ESLIRLLRRLDVEGVVVAEHRVH--YLLPAASSVYLVYDG 202 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 83.6 bits (205), Expect = 4e-18 Identities = 67/223 (30%), Positives = 109/223 (48%), Gaps = 21/223 (9%) Query: 4 VELSGVKKDYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGT 63 V L GV+ Y+T V LRGV ++PG +A+ GP+GSGKTTLL ++ + G Sbjct: 6 VRLEGVEARYNTSPPV---LRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGR 62 Query: 64 VIIDHTDIPSLDPKERARFRRGKIGFVFQTFNLIPVLTAYENVAFALDLLDLPE-----R 118 V ++ P R RR +G+ + + P L A E L + E R Sbjct: 63 V-----EVCGSPP---GRVRR-MLGYAPASPEVDPRLKAVE--VALLYRYGVSEGVAWGR 111 Query: 119 EVRERTMQILKDVGLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSET 178 E + L ++G+ + RR +LS GQ++ V +A L + P L L DEP + LD Sbjct: 112 RDWEEVLAALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSN 171 Query: 179 GEAIVHLMQELNEKYGTTFIFSTHDKMVMDHARRLVLLHDGLI 221 + +++ L + T +++THD + A +++L +GL+ Sbjct: 172 MRRVTLVLRSLRGR--ATIVYTTHDPLAAMAADSVIMLREGLL 212 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 76.3 bits (186), Expect = 6e-16 Identities = 66/204 (32%), Positives = 94/204 (46%), Gaps = 17/204 (8%) Query: 23 LRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIIDHTDIPSLDPKERARF 82 LRGV L + PGE + ++G +GSGKTTLL + L G V P R Sbjct: 20 LRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRV---SWGCP--------RG 68 Query: 83 RRGKIGFVFQTFNLIPVLTAYENVAFALDLL--DLPEREVRERTMQILKDVGLEGMEDRR 140 RG +G+V T + LT +ENV F L L + + ++L GLE Sbjct: 69 PRGCVGYVGHTPMVYGDLTVWENVEFFSSLHGGSLGDYPLAAEAWRLL---GLEKYGSHL 125 Query: 141 PAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVHLMQ-ELNEKYGTTFIF 199 +QLS G ++R+ + RAL+ P L+L DE LD EA+ L++ L E Sbjct: 126 ASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLLRLALGEGLALLMTT 185 Query: 200 STHDKMVMDHARRLVLLHDGLIQE 223 + + A R+ L DGL+ E Sbjct: 186 PLLEPRYLGLASRVYTLQDGLLAE 209 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 76.3 bits (186), Expect = 6e-16 Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 5/203 (2%) Query: 20 VHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIIDHTDIPSLDPKER 79 VHAL+GV G A+ G +G+GKTTLL + + +G +++D + L PK Sbjct: 18 VHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYE---LRPKGP 74 Query: 80 ARFRRGKIGFVFQTFNLIPVLTAYENVAFALDLLDLPE--REVRERTMQILKDVGLEGME 137 R I Q + P + AYE++A L + R+ R + + +GL Sbjct: 75 GDSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAEASEALGLNIDP 134 Query: 138 DRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVHLMQELNEKYGTTF 197 DR ++ ++QR+ + +AL VL DEPT +L E ++ L Sbjct: 135 DRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAASGAAVL 194 Query: 198 IFSTHDKMVMDHARRLVLLHDGL 220 + + M+HA RLV+L G+ Sbjct: 195 LVTHRIGEAMEHADRLVILRKGV 217 Score = 74.3 bits (181), Expect = 2e-15 Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 5/181 (2%) Query: 23 LRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIIDHTDIPSLDPKERARF 82 LR L+V GE + +AG +G+G+ L ++ L +G ++I D+ P R R Sbjct: 270 LRMARLEVRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRL 329 Query: 83 RRGKIGFVFQTFNLIPVLTAYENVAFAL----DLLDLPEREVRERTMQILKDVGLEGMED 138 G I L+P + N+A ++ D + R + ++++D+G++ + Sbjct: 330 GLGVIPEERLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGIKAVSP 389 Query: 139 RRPA-QLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVHLMQELNEKYGTTF 197 R+ +LSGG QR+ +AR L P L++A P A LD E +A+ +M+ +E+ G Sbjct: 390 RQMVDELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRMSSERGGVLV 449 Query: 198 I 198 I Sbjct: 450 I 450 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 75.1 bits (183), Expect = 1e-15 Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 10/200 (5%) Query: 23 LRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIIDHTDIPSLDPKERARF 82 LRGV L V+ GE +AG +G+GKTT L ++ L S D G + D P ER Sbjct: 30 LRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVD-PWGGGFERV-- 86 Query: 83 RRGKIGFVFQTFNLIPVLTAYENVAFALDLLDLPEREVRERTMQILKDVGLEGMED--RR 140 +G++G++ + ++ LT EN+ F L R+V E + GL ED RR Sbjct: 87 -KGEVGYLPEDASVYERLTGMENILFYARLYS-GWRDVEELVENAVFYSGL-SREDLARR 143 Query: 141 PAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVHLMQELNEKYGTTFIFS 200 S G ++R+ + L+ P LV+ DEPT+ +D I +++ L+ + G + + Sbjct: 144 AGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSRE-GRAILVT 202 Query: 201 THDKMVMDH-ARRLVLLHDG 219 THD + + A R+ ++H G Sbjct: 203 THDLALAEEIADRVTIIHGG 222 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 73.2 bits (178), Expect = 5e-15 Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 20/206 (9%) Query: 3 IVELSGVKKDYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEG 62 ++ +S V+ YH + ++ + L VE G + GP+G+GKTTLL V + + G Sbjct: 4 LLNVSNVEIMYHP---FILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERG 60 Query: 63 TVI-----IDHTDIPSLDPKERARFRRGKIGFVFQTFNLIPVLTAYEN---VAFALDLLD 114 V ++ DI + +P E AR RG I +V + + LT EN VA+A Sbjct: 61 RVTRGSIQLEGEDITNREPDEIAR--RGVI-YVMEGRRIFKELTTEENLVSVAYAAGASR 117 Query: 115 LPEREVRERTMQILKDVGLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANL 174 R V ++ + +G + LSGG+QQ +AIA AL+ P L++ DEP+ L Sbjct: 118 DDIRSVLSYFPRLKERLG------EKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGL 171 Query: 175 DSETGEAIVHLMQELNEKYGTTFIFS 200 + I ++ L+ + G T + + Sbjct: 172 APKITSQIYATIKMLHREEGLTILLA 197 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 68.9 bits (167), Expect = 1e-13 Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 13/184 (7%) Query: 23 LRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIIDHTDIPSLDPKERAR- 81 L+ V L V G + GP+G+GKTTL + L AD G V + +P ERA Sbjct: 24 LKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALLG------EPVERAGG 77 Query: 82 --FRRGKIGFVFQTFNLIPVLTAYENVAFALDLLDLPEREVRERTMQILKDVGLEGMEDR 139 FRR + ++ + +T +E + + + + E L GL G Sbjct: 78 SLFRR--VAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLEGYLEEASRLS--GLGGRLGE 133 Query: 140 RPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVHLMQELNEKYGTTFIF 199 R S G ++R+ +A L P L + DEPTA LD I L++E +E++G T + Sbjct: 134 RVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERHGVTVLL 193 Query: 200 STHD 203 S+H+ Sbjct: 194 SSHN 197 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 66.6 bits (161), Expect = 5e-13 Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 20/223 (8%) Query: 14 HTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIIDHTDIPS 73 + GE V L GV+L+ + I GP+G+GKTT L + L G V +D + Sbjct: 12 YNGEPV---LSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLDGFEATG 68 Query: 74 LDPKERARFRRGKIGFVFQTFNL--IPVLTAYENVAFALDLLDLPEREVRERTMQILKDV 131 P+ R+ G+V Q + + +T E V +L L + RER +++L + Sbjct: 69 R-PEMVGRYA----GYVPQNPSAPKLSPMTVREFVETSLRLRGVTR--ARERAVEVLHTL 121 Query: 132 GLEG-MEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVHLMQELN 190 G+ G + + R +LS G QRV IARA+ +P +++ DEP A++D I ++ L Sbjct: 122 GIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAGLA 181 Query: 191 EKYGTTFIFSTHD-KMVMDHARRLVLLHDGLI----QEDIRRE 228 + + ++HD +++ H +V+++ LI E++ RE Sbjct: 182 RE--RLVLMTSHDPSLLLGHTDIIVVINRDLIASGPPEEVYRE 222 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 63.5 bits (153), Expect = 4e-12 Identities = 56/216 (25%), Positives = 108/216 (50%), Gaps = 13/216 (6%) Query: 16 GETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSAD--EGTVIIDHTDIPS 73 GE VV L VD ++ GE A+ GP+GSGK++L ++ + + EG +++D I Sbjct: 13 GEKVV--LNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDILLDGESIKE 70 Query: 74 LDPKERAR---FRRGKIGFVFQTFNLIPVLTAYENVAF-ALDLLDLPEREVRERTMQILK 129 L P+ERA F + L ++ A+ N A DL + ++ +R + Sbjct: 71 LPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKIVKRMYEYAT 130 Query: 130 DVGLEGMEDRRPAQL--SGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVHLMQ 187 +GL+ R + SGG+++R + +A++ +P +V+ DEP + LD + + + ++ Sbjct: 131 KLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGLKIVAEFIK 190 Query: 188 ELNEKYGTTFIFSTHDKMVMDHAR--RLVLLHDGLI 221 +L + G + TH +++ R+ +L+ G + Sbjct: 191 QLRDS-GRGVMLITHYARLLNFVEPDRVTVLYRGSV 225 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 62.8 bits (151), Expect = 7e-12 Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 15/187 (8%) Query: 33 GEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIIDHTDIPSLDPKERARFRRGKIGFVFQ 92 GE + +AGP+G GKTT + + EG V D+ R ++ I Sbjct: 383 GEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYVEDL-------RVSYKPQYI----- 430 Query: 93 TFNLIPVLTAYENVAFALDLLDLPEREVRERTMQILKDVGLEGMEDRRPAQLSGGQQQRV 152 + +P T + + A + P + ++++K + L+ + +RR LSGG+ Q+V Sbjct: 431 SPESLPDATVEQVLKAANPAILAPGSWLN---LELVKRMRLDKLLERRVRTLSGGELQKV 487 Query: 153 AIARALVKNPILVLADEPTANLDSETGEAIVHLMQELNEKYGTTFIFSTHDKMVMDHARR 212 A+A AL + + L DEP+A LD E + ++ + E + HD M++D+ Sbjct: 488 AVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALVVEHDLMILDYVSD 547 Query: 213 LVLLHDG 219 ++L G Sbjct: 548 RIMLVTG 554 Score = 50.4 bits (119), Expect = 4e-08 Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 23/195 (11%) Query: 33 GEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIIDHTDIPSLDPKERARFRRGKIGFVFQ 92 G+ + + G +G+GKTT L I+ + G V P D + RFR ++ F+ Sbjct: 106 GQVVGLLGRNGTGKTTALRILAGELKPNLGRV---EGGEPEWDEILK-RFRGSELQTYFR 161 Query: 93 TFNLIPVLTAYENVAFALDLLDLPEREVRERTMQILK-------------DVGLEGMEDR 139 ++ VA + ++L R ++ R +LK VGL+ + DR Sbjct: 162 K-----LVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGVALELAEQVGLDKVFDR 216 Query: 140 RPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVHLMQELNEKYGTTFIF 199 QLSGG+ Q++ I L ++ + + DEP++ LD + L+ + G + Sbjct: 217 DVRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGA-ARPGAYVMV 275 Query: 200 STHDKMVMDHARRLV 214 HD V+D+ LV Sbjct: 276 VEHDLAVLDYVSDLV 290 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 62.4 bits (150), Expect = 9e-12 Identities = 55/186 (29%), Positives = 91/186 (48%), Gaps = 14/186 (7%) Query: 21 HALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIIDHTDIPSLDPKERA 80 +A R V+ G L + GP+G+GKTTLL + L G ++++ + P E+ Sbjct: 18 YAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVEGVN-PRSPGFEKL 75 Query: 81 RFRRGKIGFVFQTFNLIPVLTAYENVAFALDLLDLPER----EVRERTMQILKDVGLEGM 136 R IG+V + +PV+ + L+ L E E R R + L+ VGL G Sbjct: 76 LPR---IGYVPE----LPVVPLWTTPCILLETLARLEGYTSVEARVRAREALEVVGLAGE 128 Query: 137 EDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVHLMQELNEKYGTT 196 + +LS G ++RV +A+A + L++ DEP + LD E + L++ + + G T Sbjct: 129 CETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTV-AREGAT 187 Query: 197 FIFSTH 202 I S+H Sbjct: 188 VIVSSH 193 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 59.3 bits (142), Expect = 8e-11 Identities = 63/217 (29%), Positives = 94/217 (43%), Gaps = 35/217 (16%) Query: 5 ELSGVKKDYHTGETVV--HALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIV--------G 54 EL V + + VV + L+ V++ V PG A+ G SG+GKTTLL ++ G Sbjct: 436 ELQDVLRAFGAERRVVERYVLKDVNITVNPGSVAAVVGASGAGKTTLLRMILGKALGIGG 495 Query: 55 TLDSADEGTVIID-HTDIPSLDPKERARFRRGKIGFVFQTFNLIPVLTAYENVAFALDLL 113 D G V I +T +L P E G+ T E+VA L Sbjct: 496 EGYRPDSGVVKIPTNTKAAALLPGELEPSFGGE--------------TLLEHVASKLG-- 539 Query: 114 DLPEREVRERTMQILKDVGLEGMEDRRPA--QLSGGQQQRVAIARALVKNPILVLADEPT 171 +++L VGL R + +LS GQ++R +A L + P L++ DE Sbjct: 540 ------DPGAAVEVLSSVGLGDAIFFRASFGELSTGQKERAKLASLLAERPNLLVIDEFM 593 Query: 172 ANLDSETGEAIVHLMQELNEKYGTTFIFSTHDKMVMD 208 A+LD T I + +L G T I ST+ ++D Sbjct: 594 AHLDPLTARRIARKLGKLARSKGITLIVSTNRPEILD 630 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 58.2 bits (139), Expect = 2e-10 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 15/220 (6%) Query: 3 IVELSGVKKDYHTGETVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEG 62 ++E+ G+ K Y + V ALRGV V GE GP+G+GKTT + ++ G Sbjct: 4 VIEVEGLVKRYGS----VEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSG 59 Query: 63 TVIIDHTDIPSLDPKERARFRRGKIGFVFQTFNLIPVLTAYENVAFALDLLDLPEREVRE 122 + + ++ + A R ++G+V F ++ + + L+ R V Sbjct: 60 SARVFGVELYN----PGASGVRRRVGYVPGEFEFYGGVSGGRMLDYWCRLVGGCSRGVVR 115 Query: 123 RTMQILKDVGLEGMEDRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAI 182 ++ + LE R S G +Q +A+ A P LV+ DEPT LD + Sbjct: 116 ELLEAF-PLPLE----RAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRV 170 Query: 183 VHLMQELNEKYGTTFIFSTHD-KMVMDHARRLVLLHDGLI 221 + ++ + G T FS+H V A R+ LL G++ Sbjct: 171 LDFVRS-KAREGVTVFFSSHVLSEVQRVADRVGLLRSGVL 209 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 55.1 bits (131), Expect = 2e-09 Identities = 61/209 (29%), Positives = 91/209 (43%), Gaps = 36/209 (17%) Query: 18 TVVHALRGVDLQVEPGEFLAIAGPSGSGKTTLLNIVGTLDSADEGTVIIDHTDIPSLDPK 77 TV LR V L + G AI G +GSGKTTLL + L D G+V Sbjct: 2 TVRGRLRDVTLSIPRG-VTAILGANGSGKTTLLKLAARLLKPDRGSV------------- 47 Query: 78 ERARFRRGKIGFVFQTFNLIPVLTAYENVAFALDLLDLPEREVRERTMQILKDVGLEGME 137 E R ++G Q P L + A DL R +++L++ GLE Sbjct: 48 EGPR----RVGAALQN----PYL-GFLGPTVAEDLARTAGG--RGEALKLLREAGLEYAS 96 Query: 138 DRRPAQLSGGQQQRVAIARALVKNPILVLADEPTANLDSETGEAIVHLMQELNEKYGTTF 197 +R P LS G+ + +++ A+ P V+ DEPT+ LD + L+ L G Sbjct: 97 ERSPYTLSMGEARILSVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLIARL----GVPV 152 Query: 198 IFSTHDKMVMDHARRL----VLLHDGLIQ 222 + + HD +D A + V+L DG ++ Sbjct: 153 LVAGHD---IDFAAAVAGWAVILRDGRVR 178 >gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1] Length = 919 Score = 42.0 bits (97), Expect = 1e-05 Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 8/129 (6%) Query: 96 LIPVLTAYENVAFALDLLDLPEREVRERTMQILKDVGLEGMEDRRPAQ-LSGGQQQRVAI 154 L+ VL N + LD+ E+RE+ + ++ + G RP + +SGG++ +A+ Sbjct: 778 LLAVLEDEMNDILSRFNLDVAGVEIREKAAREIEVKAIGGNGAYRPLEAVSGGERTVLAL 837 Query: 155 ARALVKNPIL------VLADEPTANLDSETGEAIVHLMQELN-EKYGTTFIFSTHDKMVM 207 + L N + + DEPTANLD + ++V +++ ++ E + TH + V Sbjct: 838 SFVLALNKAVGGKLGFLALDEPTANLDEDRRRSLVEVLRGISVEGLVRQLVVVTHHEDVR 897 Query: 208 DHARRLVLL 216 D+A + L+ Sbjct: 898 DYADTICLV 906 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 226,070 Number of Sequences: 1700 Number of extensions: 9865 Number of successful extensions: 167 Number of sequences better than 1.0e-04: 42 Number of HSP's better than 0.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 71 Number of HSP's gapped (non-prelim): 51 length of query: 229 length of database: 492,079 effective HSP length: 74 effective length of query: 155 effective length of database: 366,279 effective search space: 56773245 effective search space used: 56773245 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717925|ref|YP_003873457.1| transcriptional activator [Spirochaeta thermophila DSM 6192] (239 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 236,468 Number of Sequences: 1700 Number of extensions: 10275 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 239 length of database: 492,079 effective HSP length: 74 effective length of query: 165 effective length of database: 366,279 effective search space: 60436035 effective search space used: 60436035 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717926|ref|YP_003873458.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Spirochaeta thermophila DSM 6192] (305 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600884|ref|NP_147409.1| 3-methyl-2-oxobutanoate hydroxymeth... 186 8e-49 >gi|14600884|ref|NP_147409.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Aeropyrum pernix K1] Length = 274 Score = 186 bits (471), Expect = 8e-49 Identities = 110/254 (43%), Positives = 144/254 (56%), Gaps = 5/254 (1%) Query: 48 LARKRQGKKISMVTCYDASFARVLNETEVDCLLVGDSLAMVIYGYPTTVHATLEMMVRHT 107 + + + + I VT YD A + +E VD +LVGDSL MV+ GYP+T+ TL+ MVRHT Sbjct: 11 ILKMKGSRPIVAVTAYDYPTAWIADEAGVDVILVGDSLGMVVLGYPSTLQVTLDDMVRHT 70 Query: 108 EAVRRGAPDKMIIADMPFLSMQQGKAHAVHAAGELIRAGADAVKVEGWKGIEEEIAHLVQ 167 AV R A +I+ADMPF S + + AV +A L R GA+AVK+EG + + +V Sbjct: 71 AAVARAAKRPLIVADMPFGSYEPSSSAAVESAVALARVGAEAVKLEGGSEYADRVKAIVD 130 Query: 168 AGIPVMGHLGLTPQFYYAFGGF--RVQGRDEASRTYILEGAGRLEALGCFGIVLECIPSG 225 AGIPVMGHLGLTPQ GG+ R +GRDEA R +L A L G F IVLE + Sbjct: 131 AGIPVMGHLGLTPQRAMRIGGYRPRARGRDEARR--LLLDAESLVEAGVFSIVLEFVSEE 188 Query: 226 LARVVTERISIPTIGIGAGSDTDXXXXXXXXXXXXXXEKPFRFVRRYAEVGLAVKEAVDR 285 A +VT R+ +PTI IG+G D P F ++Y + + EAV R Sbjct: 189 AAEMVTRRVPVPTICIGSGRRCDGQIIVFHDIVGLSRHTP-PFAKKYVDARRIMVEAVTR 247 Query: 286 FVEDVVEGRFPTRE 299 + EDV GRFP E Sbjct: 248 YAEDVRNGRFPGEE 261 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 296,954 Number of Sequences: 1700 Number of extensions: 12826 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 1 length of query: 305 length of database: 492,079 effective HSP length: 76 effective length of query: 229 effective length of database: 362,879 effective search space: 83099291 effective search space used: 83099291 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717927|ref|YP_003873459.1| pantothenate metabolism flavoprotein [Spirochaeta thermophila DSM 6192] (179 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431662|ref|NP_148288.2| coenzyme A biosynthesis bifunction... 58 2e-10 >gi|118431662|ref|NP_148288.2| coenzyme A biosynthesis bifunctional protein CoaBC [Aeropyrum pernix K1] Length = 412 Score = 57.8 bits (138), Expect = 2e-10 Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 7/156 (4%) Query: 3 KRILLHLTGSVACFKAAALASMLVKDGYEVQATATERALRFIGPATFEGITGRPVLTDMF 62 K I+L +T SVA +++ LA L++ G V T A + + P F +G PV T Sbjct: 23 KTIVLGVTASVALYRSLDLARWLLRRGARVITVMTPEAAKLVSPEMFHWASGGPVYTGFT 82 Query: 63 AGRPDFIPHITLAQEWADLLLVYPASANCIXXXXXXXXXXXXXXIFLA-NNFQRPVWLAP 121 G + HI++A+ A ++V PA+ + + ++ + +PV P Sbjct: 83 GG----VEHISIARA-ASAMVVAPATLSTLAKIAHGVVDNPVALAAVSIMGYGKPVIAVP 137 Query: 122 AMNTQMYLHPATQRNLKVLEEWGVVILAP-VEGRLA 156 AM+ MY P + + L GV+++ P +EG +A Sbjct: 138 AMHGNMYESPQAREVVDRLRSQGVLVVDPKIEGGVA 173 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.138 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 155,256 Number of Sequences: 1700 Number of extensions: 5366 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 1 length of query: 179 length of database: 492,079 effective HSP length: 71 effective length of query: 108 effective length of database: 371,379 effective search space: 40108932 effective search space used: 40108932 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717928|ref|YP_003873460.1| DNA / pantothenate metabolism flavoprotein [Spirochaeta thermophila DSM 6192] (228 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 186,588 Number of Sequences: 1700 Number of extensions: 6968 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 228 length of database: 492,079 effective HSP length: 74 effective length of query: 154 effective length of database: 366,279 effective search space: 56406966 effective search space used: 56406966 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717929|ref|YP_003873461.1| aspartate 1-decarboxylase [Spirochaeta thermophila DSM 6192] (120 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 126,390 Number of Sequences: 1700 Number of extensions: 4964 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 120 length of database: 492,079 effective HSP length: 66 effective length of query: 54 effective length of database: 379,879 effective search space: 20513466 effective search space used: 20513466 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717930|ref|YP_003873462.1| methionine synthase [Spirochaeta thermophila DSM 6192] (1213 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,246,542 Number of Sequences: 1700 Number of extensions: 59988 Number of successful extensions: 230 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 230 Number of HSP's gapped (non-prelim): 0 length of query: 1213 length of database: 492,079 effective HSP length: 87 effective length of query: 1126 effective length of database: 344,179 effective search space: 387545554 effective search space used: 387545554 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717931|ref|YP_003873463.1| hypothetical protein STHERM_c02160 [Spirochaeta thermophila DSM 6192] (252 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431651|ref|NP_148267.2| hypothetical protein APE_1937.1 [A... 208 1e-55 >gi|118431651|ref|NP_148267.2| hypothetical protein APE_1937.1 [Aeropyrum pernix K1] Length = 262 Score = 208 bits (529), Expect = 1e-55 Identities = 121/250 (48%), Positives = 155/250 (62%), Gaps = 6/250 (2%) Query: 4 EIPPDHPRYRSLLYRERLIEGMEKKVTAPAGLIAHGRGEAFDYLLGERTHPHAHTAIRQA 63 +IP HPRY SL+ RE+L+E EK V P GLIAHGRGE FDYLLGE++H A A R A Sbjct: 6 DIPRSHPRYESLVAREKLVEMFEKGVVVPQGLIAHGRGECFDYLLGEKSHDFALEAERVA 65 Query: 64 AFLFLTSRHPVVSVNGNVAALCPEELVRLSKVTG--APLEVNLFYRSREREEAITRVLRE 121 A L S+ PV+SVNGN AAL E+ RLS+ G A +EVN+FYR+ ER I VL Sbjct: 66 AAYLLLSKRPVISVNGNYAALAAGEIARLSEALGGRAVVEVNIFYRTEERVRRIHEVLAS 125 Query: 122 HGAERVLGVGAEAV-IPELSSERRRVDPEGILEADCVFVPLEDGDRTEALVRLGKKVITV 180 G + +L E +P L S R V EGI AD V + +EDGDRTEALV+ GK+V + Sbjct: 126 AGVKGLLPPDCEKTRVPGLESPRGIVCVEGIASADFVLLAIEDGDRTEALVKWGKRVAAI 185 Query: 181 DLNPLSRTARTATVTIVDNIVRA---LPLFIEVIERHRDDPSSLAVPDYDNKRILAEALS 237 DLNP SRTA+ A+VTIVD VRA + F++ + ++ V Y N+ L+ A Sbjct: 186 DLNPFSRTAQKASVTIVDEAVRATRNITRFVDELSGASEEELRSIVAGYSNRETLSRAFK 245 Query: 238 AIVRHLTAIA 247 AI+ L++ A Sbjct: 246 AILDRLSSAA 255 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 259,698 Number of Sequences: 1700 Number of extensions: 11784 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 1 length of query: 252 length of database: 492,079 effective HSP length: 75 effective length of query: 177 effective length of database: 364,579 effective search space: 64530483 effective search space used: 64530483 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717932|ref|YP_003873464.1| kinase [Spirochaeta thermophila DSM 6192] (301 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431652|ref|NP_148268.2| hypothetical protein APE_1939.1 [A... 61 4e-11 gi|14602065|ref|NP_148611.1| mevalonate kinase [Aeropyrum pernix... 42 2e-05 >gi|118431652|ref|NP_148268.2| hypothetical protein APE_1939.1 [Aeropyrum pernix K1] Length = 279 Score = 60.8 bits (146), Expect = 4e-11 Identities = 57/233 (24%), Positives = 90/233 (38%), Gaps = 22/233 (9%) Query: 9 PGHVTGLFHVPPQPDDLLSQGSLGAGFSIDRGVRTTVSIEKGEGIEVYIGGTEAEDPQLS 68 P H+T LF P P S GS+G G +++ R + G + +P Sbjct: 8 PHHITALFRPVPGPGPGYS-GSIGVGLAVEPRAR-------------FCPGLDGWEPGYD 53 Query: 69 VQTVAAFARAAGGLPEGKVVVRHEPEVPVGAGLGTSGAAAVGIALGLNALVGGKLSEEEV 128 + A G P G++V +P G G S A+A+ AL G + Sbjct: 54 LPQFNEAAELLGSRPGGRLVY----PLPPGRGYAVSAASAILGALAAAMERGAGVFR--A 107 Query: 129 YQVAHKAEILAQTGLGTVLGLYAG-GCKVSVTMGAPGRGEARTIEAPETIRVVIGVAGPF 187 Y+ AH+ E+ TGLG V + G G + + G PG I P + ++ G AG Sbjct: 108 YRAAHEVEVRRSTGLGDVASIACGVGLVLRYSPGPPGEALVDCIPTPPGLYIIAGEAGSM 167 Query: 188 PTQTALQDEGVRARVXXXXXXXXXXXXXXPTFERFLDLSREFSRRVDLFSPAV 240 T ++ + R P+ +RF + + +R + L S V Sbjct: 168 DTSRLIEMYSSQ-RFVDEVSRSLSRIFREPSLDRFFEEAERVTRLLSLDSRLV 219 >gi|14602065|ref|NP_148611.1| mevalonate kinase [Aeropyrum pernix K1] Length = 324 Score = 42.0 bits (97), Expect = 2e-05 Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 14/125 (11%) Query: 28 QGSLGAGFSIDRGVRTTVSIEKGEGIEVYI-------------GGTEAEDPQLSVQTVAA 74 +GSL +I R +R TV G+GI + G P L Sbjct: 23 RGSLAIVAAIGRRLRVTVR-SGGKGIVLESSMLGRHSAPLPGQGAAAKVSPVLEPYIAVL 81 Query: 75 FARAAGGLPEGKVVVRHEPEVPVGAGLGTSGAAAVGIALGLNALVGGKLSEEEVYQVAHK 134 + AA G + E +P AGLG+S A+ V AL +A+ G LS E++Y VA + Sbjct: 82 RSLAARGYSVVPHTILVESGIPPRAGLGSSAASMVAYALSYSAMHGDPLSAEDLYSVAME 141 Query: 135 AEILA 139 E +A Sbjct: 142 GEKIA 146 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 332,805 Number of Sequences: 1700 Number of extensions: 16257 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 2 length of query: 301 length of database: 492,079 effective HSP length: 76 effective length of query: 225 effective length of database: 362,879 effective search space: 81647775 effective search space used: 81647775 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717933|ref|YP_003873465.1| ureidoglycolate dehydrogenase [Spirochaeta thermophila DSM 6192] (338 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 379,866 Number of Sequences: 1700 Number of extensions: 17361 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 0 length of query: 338 length of database: 492,079 effective HSP length: 77 effective length of query: 261 effective length of database: 361,179 effective search space: 94267719 effective search space used: 94267719 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717934|ref|YP_003873466.1| hypothetical protein STHERM_c02190 [Spirochaeta thermophila DSM 6192] (128 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.333 0.148 0.489 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 142,566 Number of Sequences: 1700 Number of extensions: 5892 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 0 length of query: 128 length of database: 492,079 effective HSP length: 67 effective length of query: 61 effective length of database: 378,179 effective search space: 23068919 effective search space used: 23068919 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717935|ref|YP_003873467.1| chemotaxis methyl-accepting receptor [Spirochaeta thermophila DSM 6192] (172 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.133 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,622 Number of Sequences: 1700 Number of extensions: 2881 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 172 length of database: 492,079 effective HSP length: 71 effective length of query: 101 effective length of database: 371,379 effective search space: 37509279 effective search space used: 37509279 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717936|ref|YP_003873468.1| chemotaxis protein [Spirochaeta thermophila DSM 6192] (414 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 299,943 Number of Sequences: 1700 Number of extensions: 11517 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 414 length of database: 492,079 effective HSP length: 79 effective length of query: 335 effective length of database: 357,779 effective search space: 119855965 effective search space used: 119855965 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717937|ref|YP_003873469.1| histidine kinase [Spirochaeta thermophila DSM 6192] (900 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 890,106 Number of Sequences: 1700 Number of extensions: 40618 Number of successful extensions: 171 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 171 Number of HSP's gapped (non-prelim): 0 length of query: 900 length of database: 492,079 effective HSP length: 85 effective length of query: 815 effective length of database: 347,579 effective search space: 283276885 effective search space used: 283276885 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717938|ref|YP_003873470.1| major facilitator superfamily MFS-1 [Spirochaeta thermophila DSM 6192] (407 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.143 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 399,194 Number of Sequences: 1700 Number of extensions: 18031 Number of successful extensions: 79 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79 Number of HSP's gapped (non-prelim): 0 length of query: 407 length of database: 492,079 effective HSP length: 79 effective length of query: 328 effective length of database: 357,779 effective search space: 117351512 effective search space used: 117351512 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717939|ref|YP_003873471.1| hypothetical protein STHERM_c02240 [Spirochaeta thermophila DSM 6192] (195 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.131 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 155,476 Number of Sequences: 1700 Number of extensions: 5423 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 195 length of database: 492,079 effective HSP length: 72 effective length of query: 123 effective length of database: 369,679 effective search space: 45470517 effective search space used: 45470517 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717940|ref|YP_003873472.1| 5-formyltetrahydrofolate cyclo-ligase [Spirochaeta thermophila DSM 6192] (184 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.142 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 119,917 Number of Sequences: 1700 Number of extensions: 3410 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 184 length of database: 492,079 effective HSP length: 72 effective length of query: 112 effective length of database: 369,679 effective search space: 41404048 effective search space used: 41404048 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717941|ref|YP_003873473.1| endoribonuklease [Spirochaeta thermophila DSM 6192] (124 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431481|ref|NP_147983.2| ribonuclease UK114 [Aeropyrum pern... 110 1e-26 >gi|118431481|ref|NP_147983.2| ribonuclease UK114 [Aeropyrum pernix K1] Length = 133 Score = 110 bits (274), Expect = 1e-26 Identities = 54/118 (45%), Positives = 78/118 (66%), Gaps = 1/118 (0%) Query: 4 VHAEGAPEAIGPYSQAVRAGEMVFCSGQIGLDPATGSLVSGSIEAEVRRALENLTAVLEA 63 V E AP+ +GPYSQAV +G +F SGQI ++P TG+L G + +RAL+NL A++E Sbjct: 9 VFVETAPKPVGPYSQAVESGCFMFVSGQIPINPETGALEEGGFKESAKRALDNLKAIVEG 68 Query: 64 AGCTREDVVKTTIFLVDMADFEAVNRIYGGYFPH-RPARSTVAVKALPRGARVEVECI 120 AG + +D+VK T+++ D++ F N +Y YF PAR+ V V ALP GA +EVE + Sbjct: 69 AGYSMDDIVKVTVYITDISRFSEFNEVYREYFNRPYPARAVVGVAALPLGAPLEVEAV 126 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 125,644 Number of Sequences: 1700 Number of extensions: 4896 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 1 length of query: 124 length of database: 492,079 effective HSP length: 67 effective length of query: 57 effective length of database: 378,179 effective search space: 21556203 effective search space used: 21556203 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717942|ref|YP_003873474.1| hypothetical protein STHERM_c02270 [Spirochaeta thermophila DSM 6192] (214 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.138 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 190,798 Number of Sequences: 1700 Number of extensions: 7365 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 0 length of query: 214 length of database: 492,079 effective HSP length: 73 effective length of query: 141 effective length of database: 367,979 effective search space: 51885039 effective search space used: 51885039 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717943|ref|YP_003873475.1| anti-anti sigma factor [Spirochaeta thermophila DSM 6192] (173 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 152,732 Number of Sequences: 1700 Number of extensions: 5957 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 173 length of database: 492,079 effective HSP length: 71 effective length of query: 102 effective length of database: 371,379 effective search space: 37880658 effective search space used: 37880658 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717944|ref|YP_003873476.1| hypothetical protein STHERM_c02290 [Spirochaeta thermophila DSM 6192] (181 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.144 0.481 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 232,904 Number of Sequences: 1700 Number of extensions: 11844 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 181 length of database: 492,079 effective HSP length: 71 effective length of query: 110 effective length of database: 371,379 effective search space: 40851690 effective search space used: 40851690 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717945|ref|YP_003873477.1| hypothetical protein STHERM_c02300 [Spirochaeta thermophila DSM 6192] (266 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.140 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 275,354 Number of Sequences: 1700 Number of extensions: 12217 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 266 length of database: 492,079 effective HSP length: 75 effective length of query: 191 effective length of database: 364,579 effective search space: 69634589 effective search space used: 69634589 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717946|ref|YP_003873478.1| hypothetical protein STHERM_c02310 [Spirochaeta thermophila DSM 6192] (309 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 370,587 Number of Sequences: 1700 Number of extensions: 17760 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 0 length of query: 309 length of database: 492,079 effective HSP length: 77 effective length of query: 232 effective length of database: 361,179 effective search space: 83793528 effective search space used: 83793528 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717947|ref|YP_003873479.1| efflux carrier [Spirochaeta thermophila DSM 6192] (312 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.147 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 319,685 Number of Sequences: 1700 Number of extensions: 15009 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 0 length of query: 312 length of database: 492,079 effective HSP length: 77 effective length of query: 235 effective length of database: 361,179 effective search space: 84877065 effective search space used: 84877065 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717948|ref|YP_003873480.1| methylated-DNA-[protein]-cysteine S-methyltransferase, active site [Spirochaeta thermophila DSM 6192] (180 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601102|ref|NP_147629.1| methylated-DNA-protein-cysteine met... 40 5e-05 >gi|14601102|ref|NP_147629.1| methylated-DNA-protein-cysteine methyltransferase [Aeropyrum pernix K1] Length = 175 Score = 39.7 bits (91), Expect = 5e-05 Identities = 29/80 (36%), Positives = 34/80 (42%), Gaps = 3/80 (3%) Query: 101 LAVWDALRGIPAGQVRTYGEXXXXXXXXXXXXXXXXXXXXXXXXXLVPCHRVVGAGGSLG 160 L V+ L IP G+V TY VPCHRVV + GS+G Sbjct: 59 LIVYTLLHLIPPGKVTTYSSLARASGLSPRAVGRILARNPSPIA--VPCHRVVRSDGSIG 116 Query: 161 GYRWGVWR-KRVLLEREGWR 179 GY G R K LL+ EG R Sbjct: 117 GYSMGGPRVKAALLKLEGVR 136 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.143 0.486 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 168,545 Number of Sequences: 1700 Number of extensions: 5317 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 1 length of query: 180 length of database: 492,079 effective HSP length: 71 effective length of query: 109 effective length of database: 371,379 effective search space: 40480311 effective search space used: 40480311 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717949|ref|YP_003873481.1| vitamin B12-dependent ribonucleotide reductase NrdJ [Spirochaeta thermophila DSM 6192] (1120 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431711|ref|NP_148354.2| ribonucleotide reductase, B12-depe... 100 3e-22 >gi|118431711|ref|NP_148354.2| ribonucleotide reductase, B12-dependent [Aeropyrum pernix K1] Length = 979 Score = 99.8 bits (247), Expect = 3e-22 Identities = 59/169 (34%), Positives = 83/169 (49%), Gaps = 2/169 (1%) Query: 397 ARDLWNEIVLAAWRCADPGLQFDTTINEWHTCPADGRIRASNPCSEYMFLDDTACNLASL 456 AR++W EIV AAW DPGL + N+W P G + A+NPCSE CNL SL Sbjct: 424 AREIWREIVEAAWGGGDPGLVYFDNHNKWSPTPWLGAVNATNPCSEQTLYPFEPCNLGSL 483 Query: 457 NLLAFYDEEEGRFDVESFVHAVDIWTLILEISVVMAQFPSAEVARRSYLYRTLGLGFANL 516 ++ + GRFD+E F + V+ T ++ + + + P + R +GLG L Sbjct: 484 SVDKYV--AGGRFDLERFANDVEFLTEAMDAVIDLNRHPDERQDTANKFTRKIGLGIMGL 541 Query: 517 GSLLMVMGLPYDSEEGRAVAGAIAAIMTGRAYHMSARMAAEWGPFPRFE 565 L +G PYDSEE A + A + ++ S M A G P FE Sbjct: 542 ADALAGLGYPYDSEEAVAFTTILMAGLEVFSWKRSWEMGARLGHAPAFE 590 Score = 56.6 bits (135), Expect = 3e-09 Identities = 29/78 (37%), Positives = 42/78 (53%) Query: 828 HILMMAAVQPFVSGAISKTINMPQSATVRDVEEAYLLSWRSMLKAVALYRDGSKLSQPLV 887 H+ A Q +V AISKT+N+P++AT DVE +YL +W LK +YRD SK Q +V Sbjct: 851 HLAHQIAAQLYVDQAISKTVNLPRTATPDDVEASYLAAWLGGLKGFTVYRDESKGRQVIV 910 Query: 888 GAGSARDRAAEVIAETER 905 R ++ + Sbjct: 911 FGAQEGGRRGRLLRRARK 928 Score = 56.2 bits (134), Expect = 4e-09 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%) Query: 170 ACFILDVEDDLVGEGGIMDALHREARIFKYGSGTGSNFSKIRAEGEPXXXXXXXXXX-XX 228 AC++ V DD+ IMDA +A+ FK+G G G +FS++R + Sbjct: 145 ACYVTPVYDDM---DSIMDAATVQAKTFKWGGGQGFSFSELRPRWDVVRGTSGYSSGPMS 201 Query: 229 FLKVFDRSAAAIKSGGTTRRAAKMVVLDVDHPDILT 264 F++++D +K GG RR A M ++ V HPDI T Sbjct: 202 FMRLYDTVTELVKQGG-KRRGANMGIMHVWHPDIYT 236 Score = 47.0 bits (110), Expect = 3e-06 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 19/132 (14%) Query: 591 EGLSVTPMGLD-PDHTPGYLLETARRVWDEALEWGERHGF---RNAQVSAIAPTGTIGLL 646 E L++ P ++ P H + W E+G R G RN + IAPTGTI +L Sbjct: 688 EALNMGPAAVESPRHLLALAVYKPMEAWRLLREYGRRLGAKAPRNTVTTTIAPTGTISIL 747 Query: 647 MDCDTTGIEPDYALVKFKKLAGGGYFKIINRSVPPALRRLGYSAEQVEEIVRYCVGRGTL 706 ++GIEP +ALV +++A G + ++++R + + ++ ++ VGR L Sbjct: 748 AGT-SSGIEPYFALVYKRQVAVGTFLEVVSR----------FREDLLKAAEKHGVGRDVL 796 Query: 707 KGAPGVSYEALR 718 + + YE +R Sbjct: 797 E----IVYEEVR 804 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,174,657 Number of Sequences: 1700 Number of extensions: 54038 Number of successful extensions: 175 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 168 Number of HSP's gapped (non-prelim): 5 length of query: 1120 length of database: 492,079 effective HSP length: 87 effective length of query: 1033 effective length of database: 344,179 effective search space: 355536907 effective search space used: 355536907 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717950|ref|YP_003873482.1| 50S ribosomal protein L28 [Spirochaeta thermophila DSM 6192] (63 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.134 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,520 Number of Sequences: 1700 Number of extensions: 1025 Number of successful extensions: 1 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 63 length of database: 492,079 effective HSP length: 35 effective length of query: 28 effective length of database: 432,579 effective search space: 12112212 effective search space used: 12112212 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717951|ref|YP_003873483.1| neelaredoxin [Spirochaeta thermophila DSM 6192] (131 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.135 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 139,383 Number of Sequences: 1700 Number of extensions: 5190 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 131 length of database: 492,079 effective HSP length: 68 effective length of query: 63 effective length of database: 376,479 effective search space: 23718177 effective search space used: 23718177 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717952|ref|YP_003873484.1| phoH family protein [Spirochaeta thermophila DSM 6192] (428 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431883|ref|NP_148629.2| hypothetical protein APE_2464.1 [A... 51 5e-08 >gi|118431883|ref|NP_148629.2| hypothetical protein APE_2464.1 [Aeropyrum pernix K1] Length = 387 Score = 51.2 bits (121), Expect = 5e-08 Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 17/181 (9%) Query: 217 VKPRNREQEMVFDLLLDDEVQLVTLVXXXXXXXXXXXXXXXXXXVLEEKAYKRLLVTRPV 276 ++P++ Q + + LL D V LV V + E ++R+++ RPV Sbjct: 14 LEPKSEGQRELKEALLSD-VDLVG-VFGPTGTGKSLFSIVYGVSMTAEGRFRRVVLARPV 71 Query: 277 VPM--GKDIGFLPGDKEEKLSHWMQPIFDNLDYLVSVYSRGHV--KSVEELLAQDVIEME 332 + + G+++ + + + +YL+ + S G + + V E+L+ D + + Sbjct: 72 IDVVTGRELTVMTDAQSYRRLA--------AEYLMDILS-GFLGEERVREILSSDSLVLV 122 Query: 333 ALSFIRGRSLPYQYIIIDEAQNLSPHEIKTIVSRAGHHTKMVLTGDP-FQIDS-PYLDAN 390 F+RGR+ II+D++Q++ P I I++R G +K+++ GDP FQ S P LD Sbjct: 123 DPHFLRGRTFDNSVIIVDDSQSMPPEAIVEIITRLGTGSKLIVIGDPVFQRTSEPGLDGA 182 Query: 391 S 391 S Sbjct: 183 S 183 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 401,548 Number of Sequences: 1700 Number of extensions: 16873 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 1 length of query: 428 length of database: 492,079 effective HSP length: 79 effective length of query: 349 effective length of database: 357,779 effective search space: 124864871 effective search space used: 124864871 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717953|ref|YP_003873485.1| polysaccharide deacetylase family protein [Spirochaeta thermophila DSM 6192] (760 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 864,317 Number of Sequences: 1700 Number of extensions: 43068 Number of successful extensions: 119 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 119 Number of HSP's gapped (non-prelim): 0 length of query: 760 length of database: 492,079 effective HSP length: 84 effective length of query: 676 effective length of database: 349,279 effective search space: 236112604 effective search space used: 236112604 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717954|ref|YP_003873486.1| flagellar protein FliS [Spirochaeta thermophila DSM 6192] (131 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.132 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 109,663 Number of Sequences: 1700 Number of extensions: 3761 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 131 length of database: 492,079 effective HSP length: 68 effective length of query: 63 effective length of database: 376,479 effective search space: 23718177 effective search space used: 23718177 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717955|ref|YP_003873487.1| hypothetical protein STHERM_c02400 [Spirochaeta thermophila DSM 6192] (154 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.133 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 120,600 Number of Sequences: 1700 Number of extensions: 4524 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 154 length of database: 492,079 effective HSP length: 70 effective length of query: 84 effective length of database: 373,079 effective search space: 31338636 effective search space used: 31338636 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] (897 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|77640971|ref|NP_146975.2| flap endonuclease-1 [Aeropyrum pern... 50 3e-07 >gi|77640971|ref|NP_146975.2| flap endonuclease-1 [Aeropyrum pernix K1] Length = 350 Score = 49.7 bits (117), Expect = 3e-07 Identities = 66/262 (25%), Positives = 105/262 (40%), Gaps = 43/262 (16%) Query: 7 IDAYGLIYRAYFALIR---APMRTKDGRNTSAIYGFFRMLFRFVKE-YDPVYCGVVLDSL 62 +DAY ++Y+ A+ + P+ ++GR TS + G F V+E PVY V D Sbjct: 29 LDAYNMLYQFLTAIRQPDGTPLLDREGRVTSHLSGLFYRTINLVEEGIKPVY---VFDGK 85 Query: 63 TPTFREKTFEAYKATRQKTPEDLHPQIPVIEEILEALGFATVRMN--------GFEADDV 114 P + + E + R+ E + + E+ EA +A + E D Sbjct: 86 PPEMKSREVEE-RLRRKAEAEARYRRAVEAGEVEEARKYAMMAARLTSDMVEESKELLDA 144 Query: 115 MGTLAAMAQAEGRPCFV---------VSGDKDLAQLVTKGVKIVRM----------DKDD 155 MG A AEG +G +D L+ ++VR +D Sbjct: 145 MGMPWVQAPAEGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQ 204 Query: 156 FV-----VLDEEGVKEKWGVRADQIVDFLALVGDASDNIPGVEGIGEKTAQRLLAEYGSL 210 +V +++ E + K G+ +Q++ L+G N GV G G KTA RL+ G Sbjct: 205 YVEIKPEIIELEPLLSKLGITREQLIAVGILLG-TDYNPGGVRGYGPKTALRLVKSLGDP 263 Query: 211 EGVYAHL--DELSPSLRRKLEE 230 V A + E P RK+ E Sbjct: 264 MKVLASVPRGEYDPDYLRKVYE 285 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 956,485 Number of Sequences: 1700 Number of extensions: 46374 Number of successful extensions: 201 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 200 Number of HSP's gapped (non-prelim): 1 length of query: 897 length of database: 492,079 effective HSP length: 85 effective length of query: 812 effective length of database: 347,579 effective search space: 282234148 effective search space used: 282234148 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717957|ref|YP_003873489.1| kinase [Spirochaeta thermophila DSM 6192] (205 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.143 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 178,180 Number of Sequences: 1700 Number of extensions: 5894 Number of successful extensions: 77 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77 Number of HSP's gapped (non-prelim): 0 length of query: 205 length of database: 492,079 effective HSP length: 73 effective length of query: 132 effective length of database: 367,979 effective search space: 48573228 effective search space used: 48573228 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717958|ref|YP_003873490.1| hypothetical protein STHERM_c02430 [Spirochaeta thermophila DSM 6192] (224 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 152,201 Number of Sequences: 1700 Number of extensions: 4539 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 0 length of query: 224 length of database: 492,079 effective HSP length: 74 effective length of query: 150 effective length of database: 366,279 effective search space: 54941850 effective search space used: 54941850 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717959|ref|YP_003873491.1| serine acetyltransferase [Spirochaeta thermophila DSM 6192] (307 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.139 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 343,280 Number of Sequences: 1700 Number of extensions: 16196 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 307 length of database: 492,079 effective HSP length: 77 effective length of query: 230 effective length of database: 361,179 effective search space: 83071170 effective search space used: 83071170 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717960|ref|YP_003873492.1| patatin family protein [Spirochaeta thermophila DSM 6192] (317 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.143 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 362,462 Number of Sequences: 1700 Number of extensions: 17133 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 0 length of query: 317 length of database: 492,079 effective HSP length: 77 effective length of query: 240 effective length of database: 361,179 effective search space: 86682960 effective search space used: 86682960 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717961|ref|YP_003873493.1| chemotaxisprotein [Spirochaeta thermophila DSM 6192] (38 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.149 0.468 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,595 Number of Sequences: 1700 Number of extensions: 735 Number of successful extensions: 2 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 38 length of database: 492,079 effective HSP length: 12 effective length of query: 26 effective length of database: 471,679 effective search space: 12263654 effective search space used: 12263654 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717962|ref|YP_003873494.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (766 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 730,183 Number of Sequences: 1700 Number of extensions: 31438 Number of successful extensions: 111 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111 Number of HSP's gapped (non-prelim): 0 length of query: 766 length of database: 492,079 effective HSP length: 84 effective length of query: 682 effective length of database: 349,279 effective search space: 238208278 effective search space used: 238208278 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717963|ref|YP_003873495.1| methyl-accepting chemotaxis protein [Spirochaeta thermophila DSM 6192] (707 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aero... 57 2e-09 gi|14601261|ref|NP_147796.1| surface layer protein [Aeropyrum pe... 49 4e-07 gi|118431124|ref|NP_147358.2| surface layer protein [Aeropyrum p... 44 1e-05 >gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aeropyrum pernix K1] Length = 791 Score = 57.0 bits (136), Expect = 2e-09 Identities = 68/353 (19%), Positives = 146/353 (41%), Gaps = 42/353 (11%) Query: 375 MGALEHTGITLEEIAEETSTAVEQIQRTMEQLTQHAHSQTTSVVETSAAMEQMAKN---- 430 + L I + E+ EE T ++ + Q + ++++ ++++ A++ Sbjct: 403 LAELTEVEIEIGELMEELETLQQKAASANQGEVQEILDEAGALIDRASSLLAEARSLLDE 462 Query: 431 --IETLTRAIEHHTSTIEVSSASIEELVANIDSLAEVANRLMKGVEDLHQASDTGKEKLS 488 I I + +E + + ++ A ++ + E A R + +E+ +A + KL Sbjct: 463 GRIAEAKEKIAQAEAALEKADSKLDTAEAILEVVEEYAERAREAIEEAEEALAKAEAKLQ 522 Query: 489 SLIDLTG--LVQEASAKLQDANTVIATIASQTNLLAMNAAI----EAAHAGERGKGFAVV 542 L+G V+EA +L++A + + AI EAA E K A Sbjct: 523 LAAQLSGSEAVEEALNRLEEAKEKLEAAKEAYSNGRYGEAIVLAEEAASIAEEAKELAEK 582 Query: 543 A--------DEIRKLAEEAGSHSKRIRLQIKDITGAIEQMAAASGEADTAFGTILGRINE 594 A E+ EE K ++ +I+DI + + E A +LG++++ Sbjct: 583 AIEAAQEAVSEVLNQVEELLDRVKDLQEEIEDIAEKAREAGVLTEEIQAAIDEVLGKLDQ 642 Query: 595 LTGLIQEIQAAL-------TQQRTG-SQEIVSSLVEM-KDLTHQVRSGAREMEQGNRQIL 645 L++E + +Q+ G +++++ V M +D+ V ++ R+++ Sbjct: 643 ARSLLEEADSLAKEGDIDGARQKLGEARDVIEEAVSMVRDIRSMVEQAIGDLIDELRRLI 702 Query: 646 E------ATTNLKEITEEVK-------QAIREVEEGTSRIVDSILKVRAQSEE 685 E A N + E K +A+R +EE S I ++I K++ +++ Sbjct: 703 EELREKAAELNTEAAMLEAKARRMGDREALRLIEEARSNIEEAIEKLQDATDK 755 >gi|14601261|ref|NP_147796.1| surface layer protein [Aeropyrum pernix K1] Length = 533 Score = 48.9 bits (115), Expect = 4e-07 Identities = 57/264 (21%), Positives = 106/264 (40%), Gaps = 32/264 (12%) Query: 377 ALEHTGITLEEIAEETSTAVEQIQRTMEQLTQHAHSQTTSVVETSAAMEQMAKNIETLTR 436 A+E G+ L+ + E V ++ +E LT Q +S+ A+E +IE Sbjct: 252 AVEDLGLALDSLEER----VGDLEFAVEDLTL----QLSSLDSRVGALEDRVADIEGRLE 303 Query: 437 AIEHHTSTIEVSSASIEELVANIDSLAEVANRLMKGVEDLHQASDTGKEKLS-------- 488 A+E ++E S +++ + + +LAE L VEDL + +++LS Sbjct: 304 AVE---GSLEDLSGAVDAMSQQLQALAEDLESLSSRVEDLEARVGSVEDRLSQAEEDIDS 360 Query: 489 ----------SLIDLTGLVQEASAKLQDANTVIATIASQTNLLAMNAAIEAAHAGERGKG 538 L DL+ + EA A L+D NT + +AS L A + Sbjct: 361 LTTSLDSLRTELEDLSTRLAEAQASLEDLNTRLDQVASTLQQLQQRLATAEESLQALTED 420 Query: 539 FAVVADEIRKLAEEAGSHSKR---IRLQIKDITGAIEQMAAASGEADTAFGTILGRINEL 595 A + E+ L + +R +R + + +E + +A+ I + Sbjct: 421 LASLQAEVETLQQSIVEIDRRLGQLRSTVDAVRLEVESLGEKLVQAEEKNQRQDASIEDF 480 Query: 596 TGLIQEIQAALTQQRTGSQEIVSS 619 IQE++ L ++ +Q+ S+ Sbjct: 481 QSQIQELRTQLDEKTREAQQTAST 504 Score = 47.4 bits (111), Expect = 1e-06 Identities = 65/284 (22%), Positives = 126/284 (44%), Gaps = 34/284 (11%) Query: 421 SAAMEQMAKNIETLTRAIEHHTSTIEVSSASIEELVANIDSLAEVANRLMKGVEDLHQAS 480 +AA ++A + T+ A E EV+SA + L + SL E A VEDL A Sbjct: 211 AAAEVEVADGVATIGGARE---IAEEVASAYVAPLEERL-SLVEQA------VEDLGLAL 260 Query: 481 DTGKEKLSSLIDLTGLVQEASAKLQDANTVIATIASQTNLLAMNAAIEAAHAGERGKGFA 540 D+ +E++ DL V++ + +L ++ + + + + + +EA A Sbjct: 261 DSLEERVG---DLEFAVEDLTLQLSSLDSRVGAL--EDRVADIEGRLEAVEGSLEDLSGA 315 Query: 541 V--VADEIRKLAEEAGSHSKRIRLQIKDITGAIEQMAAASGEADTAFGTILGRINELTGL 598 V ++ +++ LAE+ S S R+ E + A G + I+ LT Sbjct: 316 VDAMSQQLQALAEDLESLSSRV-----------EDLEARVGSVEDRLSQAEEDIDSLTTS 364 Query: 599 IQEIQAALTQQRTGSQEIVSSLVEMKDLTHQVRSGAREMEQGNRQILEATTNLKEITEEV 658 + ++ L T E +SL ++ QV S ++++Q ++ A +L+ +TE++ Sbjct: 365 LDSLRTELEDLSTRLAEAQASLEDLNTRLDQVASTLQQLQQ---RLATAEESLQALTEDL 421 Query: 659 KQAIREVEEGTSRIVD---SILKVRAQSEENRTHIQALSQALSQ 699 EVE IV+ + ++R+ + R +++L + L Q Sbjct: 422 ASLQAEVETLQQSIVEIDRRLGQLRSTVDAVRLEVESLGEKLVQ 465 Score = 43.5 bits (101), Expect = 2e-05 Identities = 50/309 (16%), Positives = 120/309 (38%), Gaps = 24/309 (7%) Query: 391 ETSTAVEQIQRTMEQLTQHAHSQTTSVVETSAAMEQMAKNIETLTRAIEHHTSTIEVSSA 450 E + V I E + A + + E + +EQ +++ ++E +E + Sbjct: 216 EVADGVATIGGAREIAEEVASAYVAPLEERLSLVEQAVEDLGLALDSLEERVGDLEFAVE 275 Query: 451 SIEELVANIDSLAEVANRLMKGVEDLHQASDTGKEKLSSLIDLTGLVQEASAKLQDANTV 510 + ++++DS + +E +A + E LS +D + Q+ A +D Sbjct: 276 DLTLQLSSLDSRVGALEDRVADIEGRLEAVEGSLEDLSGAVD--AMSQQLQALAED---- 329 Query: 511 IATIASQTNLLAMNAAIEAAHAGERGKGFAVVADEIRKLAEEAGSHSKRIRLQIKDITGA 570 L ++++ +E A V D + + E+ S + + + Sbjct: 330 ---------LESLSSRVEDLEA-----RVGSVEDRLSQAEEDIDS----LTTSLDSLRTE 371 Query: 571 IEQMAAASGEADTAFGTILGRINELTGLIQEIQAALTQQRTGSQEIVSSLVEMKDLTHQV 630 +E ++ EA + + R++++ +Q++Q L Q + L ++ + Sbjct: 372 LEDLSTRLAEAQASLEDLNTRLDQVASTLQQLQQRLATAEESLQALTEDLASLQAEVETL 431 Query: 631 RSGAREMEQGNRQILEATTNLKEITEEVKQAIREVEEGTSRIVDSILKVRAQSEENRTHI 690 + E+++ Q+ ++ E + + + + EE R SI ++Q +E RT + Sbjct: 432 QQSIVEIDRRLGQLRSTVDAVRLEVESLGEKLVQAEEKNQRQDASIEDFQSQIQELRTQL 491 Query: 691 QALSQALSQ 699 ++ Q Sbjct: 492 DEKTREAQQ 500 >gi|118431124|ref|NP_147358.2| surface layer protein [Aeropyrum pernix K1] Length = 1550 Score = 43.9 bits (102), Expect = 1e-05 Identities = 59/313 (18%), Positives = 132/313 (42%), Gaps = 29/313 (9%) Query: 397 EQIQRTMEQLTQHAHSQTTSVVETSAAMEQMAKNIETLTRAIEHHTSTIEVSSASIEELV 456 + I T+ + A S+V+ S+ E +++ ++++ AI+ + I+ SIE V Sbjct: 1146 DTIDYTLGVVRLGADGGVLSIVDLSSVEEGISE-VKSIVLAIQDDLTVIDTKLDSIEATV 1204 Query: 457 ANIDS----LAEVANRLMKGVEDLHQA-SDTGKEKLSSLIDLTGLVQEASAKLQDANTVI 511 I+ L L V++L + TG+E L +++G + E S + + Sbjct: 1205 TEINEGVAILQTDLGNLQASVDELTELLQQTGEEITMKLDEISGDLAEISNGVATIQGDV 1264 Query: 512 ATIASQTNLLAMNAAIEAAHAGERGKGFAVVADEIRKLAEEAGSHSKRIRLQIKDITGAI 571 ATI + AMNA + + ++ ++ AG+ I + ++D+ + Sbjct: 1265 ATILELLD--AMNATL------------TTIQGDVAEIKTTAGT----ILVSVQDLQTIV 1306 Query: 572 EQMAAASGEA-DTAFGTILGRINELTGLIQEIQAALTQQRTGSQEIVSSL----VEMKDL 626 A +A + +L + + + A +T G E+ + L V ++DL Sbjct: 1307 ADSTDAVIKAVEDNVALVLDGQQLILESLDTLDAKITAVSDGVAEVQTILGDVSVSLEDL 1366 Query: 627 THQVRSGAREMEQGNRQILEATTNLKEITEEVKQAIREVEEGTSRIVDSILKVRAQSEEN 686 + + + N+ + TT++ +T ++ +E G + +D +L+ + + Sbjct: 1367 VEANATIEEVVVENNQLLATITTSMGTLTADMSTLKDLIESGVNVKLDQVLEDLSTISDQ 1426 Query: 687 RTHIQALSQALSQ 699 + A ++A++Q Sbjct: 1427 NAQLAAQAEAIAQ 1439 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.130 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 588,632 Number of Sequences: 1700 Number of extensions: 23965 Number of successful extensions: 151 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 130 Number of HSP's gapped (non-prelim): 13 length of query: 707 length of database: 492,079 effective HSP length: 83 effective length of query: 624 effective length of database: 350,979 effective search space: 219010896 effective search space used: 219010896 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717964|ref|YP_003873496.1| hypothetical protein STHERM_c02490 [Spirochaeta thermophila DSM 6192] (359 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.308 0.127 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 230,742 Number of Sequences: 1700 Number of extensions: 7842 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 359 length of database: 492,079 effective HSP length: 78 effective length of query: 281 effective length of database: 359,479 effective search space: 101013599 effective search space used: 101013599 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717965|ref|YP_003873497.1| beta-mannosidase [Spirochaeta thermophila DSM 6192] (809 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 895,499 Number of Sequences: 1700 Number of extensions: 42626 Number of successful extensions: 88 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88 Number of HSP's gapped (non-prelim): 0 length of query: 809 length of database: 492,079 effective HSP length: 84 effective length of query: 725 effective length of database: 349,279 effective search space: 253227275 effective search space used: 253227275 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717966|ref|YP_003873498.1| transcriptional regulator [Spirochaeta thermophila DSM 6192] (399 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 372,529 Number of Sequences: 1700 Number of extensions: 15370 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 0 length of query: 399 length of database: 492,079 effective HSP length: 79 effective length of query: 320 effective length of database: 357,779 effective search space: 114489280 effective search space used: 114489280 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717967|ref|YP_003873499.1| hypothetical protein STHERM_c02520 [Spirochaeta thermophila DSM 6192] (398 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.140 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 403,383 Number of Sequences: 1700 Number of extensions: 18426 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 398 length of database: 492,079 effective HSP length: 79 effective length of query: 319 effective length of database: 357,779 effective search space: 114131501 effective search space used: 114131501 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717968|ref|YP_003873500.1| glycosyltransferase [Spirochaeta thermophila DSM 6192] (346 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 329,511 Number of Sequences: 1700 Number of extensions: 15201 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 346 length of database: 492,079 effective HSP length: 78 effective length of query: 268 effective length of database: 359,479 effective search space: 96340372 effective search space used: 96340372 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717969|ref|YP_003873501.1| peptidase [Spirochaeta thermophila DSM 6192] (391 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 319,236 Number of Sequences: 1700 Number of extensions: 11905 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 391 length of database: 492,079 effective HSP length: 79 effective length of query: 312 effective length of database: 357,779 effective search space: 111627048 effective search space used: 111627048 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717970|ref|YP_003873502.1| aldose 1-epimerase [Spirochaeta thermophila DSM 6192] (375 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 448,997 Number of Sequences: 1700 Number of extensions: 22694 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 375 length of database: 492,079 effective HSP length: 78 effective length of query: 297 effective length of database: 359,479 effective search space: 106765263 effective search space used: 106765263 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717971|ref|YP_003873503.1| phosphofruktokinase [Spirochaeta thermophila DSM 6192] (393 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 445,897 Number of Sequences: 1700 Number of extensions: 21677 Number of successful extensions: 81 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81 Number of HSP's gapped (non-prelim): 0 length of query: 393 length of database: 492,079 effective HSP length: 79 effective length of query: 314 effective length of database: 357,779 effective search space: 112342606 effective search space used: 112342606 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717972|ref|YP_003873504.1| glucosamine--fructose-6-phosphate aminotransferase [Spirochaeta thermophila DSM 6192] (329 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431362|ref|NP_147783.2| isomerizing glucosamine--fructose-... 45 2e-06 >gi|118431362|ref|NP_147783.2| isomerizing glucosamine--fructose-6-phosphate aminotransferase [Aeropyrum pernix K1] Length = 617 Score = 45.4 bits (106), Expect = 2e-06 Identities = 71/292 (24%), Positives = 105/292 (35%), Gaps = 54/292 (18%) Query: 71 AMQAREYT--LDGWGVFVA-SNSGKTAEGVRLLASLREXXXXXXXXXXXXXXXSPIGRGA 127 A + + YT +DG V VA S SG+T + + + R S + R A Sbjct: 335 ASEHKVYTPGVDGETVVVAVSQSGETYDTLEAVREWR--GRGARVIGVTNVVGSALDREA 392 Query: 128 DAVYELRCGPEEAVAATKSVVEQAFFYDV----------------------VLRGEKAAA 165 D LR GPE VAATK+ + Q VL G AA Sbjct: 393 DVTLYLRAGPEIGVAATKTFLAQTILLQTLSIAAAGEAGRLTSGETRELTGVLEGAPDAA 452 Query: 166 RRDELAALIEEVFWMDLPEELVRPLVGAPVLYFAGRNNG--VAEELTLKTNEITRKKSDY 223 RR LA+ E L GA +Y GR G +A E LK E++ ++ Sbjct: 453 RRAILAS-------EGAAREAASLLKGAGSMYIIGRGLGGRLAMEAALKVKEVSYIHAEA 505 Query: 224 LEGTYAVHGIEEVMSPEEVVVLIDPFEEEEDKFASVLEEGVGVKVLAIAHRETRFPT--- 280 + HG ++ P V ++ + E ++ + G V +A + + T Sbjct: 506 YPAGESKHGPIALVEPGFKVYVVATSDSPEVMGNAIEMKARGASVTVVAPSDLQLDTPEG 565 Query: 281 ---ILLPQV-------EQGCAPYLQLVAGWNLLVEVGVRSGIHLDKPQRARK 322 + +P PY QL+A + V G DKP+ K Sbjct: 566 IEVLKMPPTGGETLLDPYSLTPYFQLLA-----YHLAVARGYDPDKPRNLAK 612 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 312,997 Number of Sequences: 1700 Number of extensions: 13521 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 1 length of query: 329 length of database: 492,079 effective HSP length: 77 effective length of query: 252 effective length of database: 361,179 effective search space: 91017108 effective search space used: 91017108 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717973|ref|YP_003873505.1| deacetylase [Spirochaeta thermophila DSM 6192] (269 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 299,575 Number of Sequences: 1700 Number of extensions: 13710 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 269 length of database: 492,079 effective HSP length: 75 effective length of query: 194 effective length of database: 364,579 effective search space: 70728326 effective search space used: 70728326 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717974|ref|YP_003873506.1| aldose-epimerase [Spirochaeta thermophila DSM 6192] (309 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.146 0.493 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 394,280 Number of Sequences: 1700 Number of extensions: 20627 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 309 length of database: 492,079 effective HSP length: 77 effective length of query: 232 effective length of database: 361,179 effective search space: 83793528 effective search space used: 83793528 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717975|ref|YP_003873507.1| sugar ABC transporter sugar-binding protein [Spirochaeta thermophila DSM 6192] (428 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430849|ref|NP_146914.2| ABC transporter substrate-binding ... 67 1e-12 >gi|118430849|ref|NP_146914.2| ABC transporter substrate-binding protein [Aeropyrum pernix K1] Length = 468 Score = 66.6 bits (161), Expect = 1e-12 Identities = 58/271 (21%), Positives = 117/271 (43%), Gaps = 16/271 (5%) Query: 33 TLDVLAYGDAANVEGQQWINIVEGFMSENPNIEIKYELLYDEAYHQKRTARIAAGDVPDL 92 TL V+ G + E + ++ +E FM ENPN+ IKY + E + + + AG P Sbjct: 91 TLTVI--GPWSGKEQEYFMTALEKFMEENPNVTIKYVPMRAEEVARTLSVQFEAGVTPAD 148 Query: 93 AYLGADARWGKDWMEAGLLVDHREWLDPEYYDLSLIPSMGPNGEVWYVPLGTSNITTVLY 152 + A W + + G +++ ++ + Y ++ ++ N ++W VP T + + Sbjct: 149 VVITPWAWWIVEMAQKGHVIEVTGLINEDEYVGGILDNVKWNNKLWGVPF-TMWLKPGFW 207 Query: 153 MNRALVEQLGFSAPKTYEDLVAMVPAARAKGL----NVVEIAGADGWVWGSCLMSGIVGR 208 ++ + G S P ++E+ + ++ + KG+ N + + GW I+ Sbjct: 208 YKKSFFAKHGLSEPNSWEEFLQLLD--QIKGIEGIKNPIVSGDSVGWPLSDVTEHFII-- 263 Query: 209 VTGDPAWVQKAVKGEKKFTDPEFVASLALLKKMVDDGVLSSKSLLVNYGTALSNFNNQKA 268 G P K + GE FTDP+ V L +++ G S + + +A+ + ++ Sbjct: 264 AFGGPELQYKLITGEVSFTDPQVVEIFEKLAMLIEQGYFSEP---IEWTSAVEKWWAEEY 320 Query: 269 LFMIDGQWRAGGIDPTLAENVELLPIPTLPG 299 G W G ++ ++ P+P G Sbjct: 321 ALYFMGTWITGMVED--PNDLAFFPLPGARG 349 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 431,254 Number of Sequences: 1700 Number of extensions: 18903 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 1 length of query: 428 length of database: 492,079 effective HSP length: 79 effective length of query: 349 effective length of database: 357,779 effective search space: 124864871 effective search space used: 124864871 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717976|ref|YP_003873508.1| permease [Spirochaeta thermophila DSM 6192] (304 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 75 3e-15 gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyru... 74 5e-15 gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum... 67 4e-13 gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 40 1e-04 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 74.7 bits (182), Expect = 3e-15 Identities = 51/198 (25%), Positives = 95/198 (47%), Gaps = 3/198 (1%) Query: 68 WHAFKNNLIVVAVSVFGQIPIGFVLAYILYRKMIRSPRFFQSVIFLPQFLSTIVVGILWK 127 W A +N+I +A+ + +G LAY+L K ++++F+ + +V G++ + Sbjct: 74 WGALIHNIIWMALHIPLVTFLGLFLAYLL--KYTFGSSIVKTIVFIGMVIPMVVGGLIVR 131 Query: 128 RLFEADGPVARLIQWFTRDPSAQFDYMLRPETVMYPIAFVLLWMYTGFYMVVFLANLQKL 187 +F+ V L+ + P+ + + +W++TGF + V+ A L + Sbjct: 132 FMFDEYVGVVPLVFKALGVDFLAKTWTNYPQLSLLSLILGSVWLWTGFSLTVYSAALGSI 191 Query: 188 DAQLIEAAKIDGATEPQIFVKIIMPLLSGTILVSSILAIAGSLKSFDLIFAITDRGL-TR 246 + IEAA+IDGA IF KI+ PL+ ++ ++ + LK FD+++ T G Sbjct: 192 PSSFIEAARIDGAGHWHIFWKIVFPLVRPATIIVVVMTMLWDLKIFDIVYVATLGGPGGS 251 Query: 247 QNALVLSIYMYQVGFHNY 264 N L L +Y Y +Y Sbjct: 252 SNVLALVMYQYMARALDY 269 >gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyrum pernix K1] Length = 314 Score = 73.9 bits (180), Expect = 5e-15 Identities = 76/299 (25%), Positives = 140/299 (46%), Gaps = 15/299 (5%) Query: 16 VGPALLLYTLILAYPVVFSLGLSFTDY-NPNVEG-TGKFVGVSHYLRMVR----DPLFWH 69 +GPALL+ P++ ++ SFT+ N NV+ VG+ +Y +V DP+F + Sbjct: 13 LGPALLIVITFFFLPLLLTVYTSFTNMRNWNVDAYLFDIVGLYNYKVLVHFAKYDPMFRN 72 Query: 70 AFKNNLIVVAVSVFGQIPIGFVLAYILYRKMIRSPRFFQSVIFLPQFLSTIVVGILWKRL 129 A ++ VAV++ + G LA + + R ++ + LP+ V +LW Sbjct: 73 ALITTVVFVAVTLVVNVLGGLTLAILTFFLEERISIHYRLLWLLPRMTPVAVYSLLWYYF 132 Query: 130 FEAD--GPVAR--LIQWFTRDPSAQFDYMLRPETVMYPIAFVLLWMYTGFYMVVFLANLQ 185 F +D G + R L+ P YML P + + FV + F M+VF + ++ Sbjct: 133 FHSDAIGTLNRILLLAGVIDKPINWGSYML-PLGTWWILIFVNGLVGVSFGMIVFYSAIR 191 Query: 186 KLDAQLIEAAKIDGATEPQIFVKIIMPLLSGTILVSSILAIAGSLKSFDLIFAITDRGLT 245 + + I AA++DGA+ I +II+P++ +L ++ + L ++ IF + + G+ Sbjct: 192 SIPWEYIAAARVDGASNLVIIRRIIVPMIRWHLLFVTVWQMLSLLTTYTHIFLLYEWGVV 251 Query: 246 -RQNALVLSIYMYQVGFHNYDDPLRFAYGATIANSIIFIS--VGLILLANFISRRFASR 301 R S+ ++ + F + LR A A ++ I +GL+ L +R +R Sbjct: 252 DRTWGQTWSLLVFNLAFLPVGE-LRQGLAAAAATVLVVIGAILGLVTLRILGFQRMITR 309 >gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum pernix K1] Length = 288 Score = 67.4 bits (163), Expect = 4e-13 Identities = 64/283 (22%), Positives = 122/283 (43%), Gaps = 21/283 (7%) Query: 15 LVGPALLLYTLILAYPVVFSLGLSFTDYNPNVEGTGKFVGVSHYLRMVRDPL--FWHAFK 72 L+ P +L + +AYP++ S ++F G+ F V L PL FW A K Sbjct: 17 LLSPTILYLAVFIAYPIIDSFRIAFVK-----NGSISFEAVDFLLY---SPLSEFWSALK 68 Query: 73 NNLIVVAVSVFGQIPIGFVLAYILYRKMIRSPRFFQSVIFLPQFLSTIVVGILWKRLFEA 132 ++ A+ V + + A IL K R V+ +P LS + G++W + Sbjct: 69 YTFLL-AILVIPTETLLALTAVILLFKRFRGRDAVIYVLVMPLALSDLAAGLIWYSMLTG 127 Query: 133 DGPVARLI--QWFTRDPSAQFDYMLRPETVMYPIAFVLLWMYTGFYMVVFLANLQKLDAQ 190 G + +L+ DP F Y R T + + +W T V+ A Q ++ + Sbjct: 128 KGFLNKLLLNMGLISDPIIFFGYENRWLTFL-AVYLAEVWRSTAIVFVILFAGAQLINKE 186 Query: 191 LIEAAKIDGATEPQIFVKIIMPLLSGTILVSSILAIAGSLKSFDLIFAITDRGLTRQNAL 250 + EAA++ GA+ I++P++ ++ + ++ + + F +++ + R + L Sbjct: 187 VFEAAEVFGASFYVKLRHILIPMIKPSLQAALLIRTLFAFQVFAVVWILAGRDIP---VL 243 Query: 251 VLSIYMYQVGFHNYDDPLRFAYGATIANSIIFISVGLILLANF 293 Y V H YD +A I +++ S+G++ + F Sbjct: 244 AGEAYYSIVELHKYDVAALYA----IVIALLSASIGVVYIRVF 282 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 39.7 bits (91), Expect = 1e-04 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 7/85 (8%) Query: 157 PETVMYPIAFVLLWMYTGFYMVVFLANLQKLDAQLIEAAKIDGATEPQIFVKIIMPLLSG 216 P ++ A+ + W+ F+M F L + ++ EAA++DGA++ +IF KI++P+ Sbjct: 149 PGIILVHSAWGMAWII--FFMKNFFDILPR---EVEEAARVDGASDFRIFYKIVLPMSLP 203 Query: 217 TILVSSILAIAGSLKS--FDLIFAI 239 IL +S+L S F+LIF I Sbjct: 204 GILSASVLQFTWVWSSFFFELIFLI 228 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.145 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 299,204 Number of Sequences: 1700 Number of extensions: 13223 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 4 length of query: 304 length of database: 492,079 effective HSP length: 76 effective length of query: 228 effective length of database: 362,879 effective search space: 82736412 effective search space used: 82736412 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717977|ref|YP_003873509.1| permease [Spirochaeta thermophila DSM 6192] (378 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 83 1e-17 gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyru... 55 3e-09 gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum... 54 6e-09 gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 45 2e-06 gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease... 44 5e-06 gi|14601089|ref|NP_147615.1| spermidine/putrescine ABC transport... 40 7e-05 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 83.2 bits (204), Expect = 1e-17 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 3/163 (1%) Query: 157 NYISAISYG--KLAGKFVNSVIYAGVSTVLIVLLSIMVGFGLSKFPFRRLSQIIXXXXXX 214 NYI A SY ++G ++NS+I A +TV+ V + +G S+F F L + Sbjct: 64 NYIKAWSYDPYSVSGGYINSLIVALPATVIPVAAASFAAYGFSRFSFP-LKSYLFLVTIL 122 Query: 215 XXXXXXXXXXXXXXXXMRSLHLVDTRIGVILVYTAFGLPLGVMLSTQFISGLPSSLVESA 274 +++L L++T G+ILV++A+G+ + F LP + E+A Sbjct: 123 LMALPQQIVVVPLFLLLKNLGLINTFPGIILVHSAWGMAWIIFFMKNFFDILPREVEEAA 182 Query: 275 AIDGASVFRTFWSVILPMSMPVAVTIAIINGLGIWNEFVLVLV 317 +DGAS FR F+ ++LPMS+P ++ +++ +W+ F L+ Sbjct: 183 RVDGASDFRIFYKIVLPMSLPGILSASVLQFTWVWSSFFFELI 225 >gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyrum pernix K1] Length = 302 Score = 55.1 bits (131), Expect = 3e-09 Identities = 28/89 (31%), Positives = 42/89 (47%) Query: 243 VILVYTAFGLPLGVMLSTQFISGLPSSLVESAAIDGASVFRTFWSVILPMSMPVAVTIAI 302 +IL A +P+ + L F +P L SA +DGAS R +WS+++P+ P + I Sbjct: 167 IILARAALEVPMAIWLFKGFFDKIPWELEWSALVDGASRVRVWWSILVPLVKPGIAAVLI 226 Query: 303 INGLGIWNEFVLVLVLASSEATKSLPVAV 331 L W EF+ V SLP + Sbjct: 227 FTFLAGWEEFIYFYVFLKPFGIDSLPTFI 255 >gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum pernix K1] Length = 270 Score = 53.9 bits (128), Expect = 6e-09 Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 1/148 (0%) Query: 171 FVNSVIYAGVSTVLIVLLSIMVGFGLSKFPFRRLSQIIXXXXXXXXXXXXXXXXXXXXXX 230 F+ SV ++ + LL + G+ L+++ F + Sbjct: 69 FLRSVAVGAMTVGISFLLGLPGGYALARYVFPG-RDAVKLAIIATRMFPIIVISVSLLKT 127 Query: 231 MRSLHLVDTRIGVILVYTAFGLPLGVMLSTQFISGLPSSLVESAAIDGASVFRTFWSVIL 290 +L L DT IG+ L +TA LP V+++ G+P L E+ I G S F + L Sbjct: 128 FFNLGLNDTLIGLALAHTAMALPFVVIITGSIFGGIPRDLEEAGMIFGLSSIMVFLRITL 187 Query: 291 PMSMPVAVTIAIINGLGIWNEFVLVLVL 318 P++ P + L WNE + VL Sbjct: 188 PLAAPGLTAAGMFTFLLSWNEVFMASVL 215 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 45.4 bits (106), Expect = 2e-06 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%) Query: 234 LHLVDTRIGVILVYTAFGLPLGVMLSTQFISGLPSSLVESAAIDGASVFRTFWSVILPMS 293 L L+ +G + ++T F L + + + +PSS +E+A IDGA + FW ++ P+ Sbjct: 163 LSLLSLILGSVWLWTGFSLTV----YSAALGSIPSSFIEAARIDGAGHWHIFWKIVFPLV 218 Query: 294 MPVAVTIAIINGLGIWNEFVLVLV 317 P + + ++ L F +V V Sbjct: 219 RPATIIVVVMTMLWDLKIFDIVYV 242 >gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease ModB [Aeropyrum pernix K1] Length = 261 Score = 44.3 bits (103), Expect = 5e-06 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 2/101 (1%) Query: 243 VILVYTAFGLPLGVMLSTQFISGLPSSLVESAAIDGASVFRTFWSVILPMSMPVAVTIAI 302 VIL P+ V + T S +P L E+A GA + ++LP+S+P ++ Sbjct: 129 VILAQLLVTTPIAVSMLTGVFSMVPRELEEAAEAYGAGRLQILIRIVLPLSLPGILSALA 188 Query: 303 INGLGIWNEFVLVLVLASS--EATKSLPVAVYAFTSLTSTQ 341 + EF LVLA + T++LP+A+Y SL + Sbjct: 189 VTFFRALGEFGATLVLAGNIPGRTETLPLALYNAISLADVE 229 >gi|14601089|ref|NP_147615.1| spermidine/putrescine ABC transporter permease [Aeropyrum pernix K1] Length = 257 Score = 40.4 bits (93), Expect = 7e-05 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 7/96 (7%) Query: 233 SLHLVDTRIGVILVYTAF-------GLPLGVMLSTQFISGLPSSLVESAAIDGASVFRTF 285 S+ LV T +GV +TA LPLG++ + +SG+ SLVE+A GA + Sbjct: 114 SIKLVLTLVGVKPGWTATFIGLVYENLPLGILFAFAGVSGVSRSLVEAARTLGAGRLEVY 173 Query: 286 WSVILPMSMPVAVTIAIINGLGIWNEFVLVLVLASS 321 SV+ P+++P ++ L + ++V+ +L + Sbjct: 174 RSVVAPLALPWLAAGFVVVFLISFTDYVVPSLLGGT 209 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.140 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 332,908 Number of Sequences: 1700 Number of extensions: 13331 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 6 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 6 length of query: 378 length of database: 492,079 effective HSP length: 78 effective length of query: 300 effective length of database: 359,479 effective search space: 107843700 effective search space used: 107843700 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717978|ref|YP_003873510.1| glycoside hydrolase family protein [Spirochaeta thermophila DSM 6192] (601 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 678,209 Number of Sequences: 1700 Number of extensions: 33766 Number of successful extensions: 99 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99 Number of HSP's gapped (non-prelim): 0 length of query: 601 length of database: 492,079 effective HSP length: 82 effective length of query: 519 effective length of database: 352,679 effective search space: 183040401 effective search space used: 183040401 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717979|ref|YP_003873511.1| protein involved in chemotaxis signal transduction [Spirochaeta thermophila DSM 6192] (620 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601261|ref|NP_147796.1| surface layer protein [Aeropyrum pe... 41 1e-04 >gi|14601261|ref|NP_147796.1| surface layer protein [Aeropyrum pernix K1] Length = 533 Score = 40.8 bits (94), Expect = 1e-04 Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 5/153 (3%) Query: 463 IRKLAESSSQYASRIEGSLRKIVEEVSLALKQSEGSEQAYHEVSDLMRRVEDALGEIMEA 522 + L S SR+ G+L V ++ L+ EGS + D M + AL E +E+ Sbjct: 274 VEDLTLQLSSLDSRV-GALEDRVADIEGRLEAVEGSLEDLSGAVDAMSQQLQALAEDLES 332 Query: 523 ----IHQLADSTGTVHEVLRLFSEGARRITEGVRTITKETEGIHVAAQDARSRAETLSRG 578 + L G+V + L E +T + ++ E E + +A++ E L+ Sbjct: 333 LSSRVEDLEARVGSVEDRLSQAEEDIDSLTTSLDSLRTELEDLSTRLAEAQASLEDLNTR 392 Query: 579 MDEIALGGREILQAVTHTRELAQQTATVVASLR 611 +D++A +++ Q + E Q +ASL+ Sbjct: 393 LDQVASTLQQLQQRLATAEESLQALTEDLASLQ 425 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.130 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 464,349 Number of Sequences: 1700 Number of extensions: 18034 Number of successful extensions: 118 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 114 Number of HSP's gapped (non-prelim): 5 length of query: 620 length of database: 492,079 effective HSP length: 82 effective length of query: 538 effective length of database: 352,679 effective search space: 189741302 effective search space used: 189741302 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717980|ref|YP_003873512.1| glycoside hydrolase, family 9 [Spirochaeta thermophila DSM 6192] (557 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 623,229 Number of Sequences: 1700 Number of extensions: 30204 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 0 length of query: 557 length of database: 492,079 effective HSP length: 82 effective length of query: 475 effective length of database: 352,679 effective search space: 167522525 effective search space used: 167522525 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717981|ref|YP_003873513.1| diphosphate--fructose-6-phosphate 1-phosphotransferase [Spirochaeta thermophila DSM 6192] (451 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 430,889 Number of Sequences: 1700 Number of extensions: 18253 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 0 length of query: 451 length of database: 492,079 effective HSP length: 80 effective length of query: 371 effective length of database: 356,079 effective search space: 132105309 effective search space used: 132105309 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717982|ref|YP_003873514.1| hydrolase [Spirochaeta thermophila DSM 6192] (134 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 141,763 Number of Sequences: 1700 Number of extensions: 6160 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 134 length of database: 492,079 effective HSP length: 68 effective length of query: 66 effective length of database: 376,479 effective search space: 24847614 effective search space used: 24847614 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717983|ref|YP_003873515.1| hypothetical protein STHERM_c02690 [Spirochaeta thermophila DSM 6192] (388 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.131 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 344,796 Number of Sequences: 1700 Number of extensions: 13418 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 388 length of database: 492,079 effective HSP length: 79 effective length of query: 309 effective length of database: 357,779 effective search space: 110553711 effective search space used: 110553711 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717984|ref|YP_003873516.1| peroxiredoxin [Spirochaeta thermophila DSM 6192] (217 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601964|ref|NP_148509.1| thioredoxin peroxidase [Aeropyrum p... 287 1e-79 gi|14600438|ref|NP_146952.1| thiol peroxidase [Aeropyrum pernix K1] 81 2e-17 gi|14600604|ref|NP_147121.1| thiol peroxidase [Aeropyrum pernix K1] 60 3e-11 gi|118431740|ref|NP_148402.2| thiol peroxidase [Aeropyrum pernix... 52 1e-08 >gi|14601964|ref|NP_148509.1| thioredoxin peroxidase [Aeropyrum pernix K1] Length = 250 Score = 287 bits (735), Expect = 1e-79 Identities = 128/212 (60%), Positives = 169/212 (79%), Gaps = 4/212 (1%) Query: 7 GRFPLIGEAFPEMEVQTTHGPKRLPSDY--KGKWVVLFSHPADFTPVCTTEFVAFAKRYD 64 G PLIGE FPEMEV T HG +LP Y +GKW VLFSHPADFTPVCTTEFV+FA+RY+ Sbjct: 3 GSIPLIGERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYE 62 Query: 65 QFKELNAELVGLSIDQVFSHIKWVEWIEEKLGVQIPFPIIADDQGRVAQRLGMLHLEAGS 124 F+ L +L+GLS+D VFSHIKW EWIE +GV+IPFPIIAD QG VA+RLG+LH E+ + Sbjct: 63 DFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESAT 122 Query: 125 NTVRAVFLIDPEGTVRLVLYYPPEVGRNIDEVVRVIRAFQLSDKLKVAIPANWPNNELIG 184 +TVR VF++D G +R +LYYP E+GR +DE++R+++A +L D LK A+PA+WPNNE+IG Sbjct: 123 HTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNEIIG 182 Query: 185 DKVIVPPPTSQKEAKERLK--KYEGYDWWFCY 214 + +IVPPPT++ +A+ R++ +Y DWWFC+ Sbjct: 183 EGLIVPPPTTEDQARARMESGQYRCLDWWFCW 214 >gi|14600438|ref|NP_146952.1| thiol peroxidase [Aeropyrum pernix K1] Length = 163 Score = 80.9 bits (198), Expect = 2e-17 Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 9/165 (5%) Query: 10 PLIGEAFPEMEVQTTHGPKRLPSDYKGKWVVLFSHPADFTPVCTTEFVAFAKRYDQFKEL 69 P +GE P+ E G K SD++G+ VVL+ +P TP CT E V F + D+F++L Sbjct: 2 PGVGEQAPDFEGIAHTGEKIRLSDFRGRIVVLYFYPRAMTPGCTREGVRFNELLDEFEKL 61 Query: 70 NAELVGLSIDQVFSHIKWVEWIEEKLGVQIPFPIIADDQGRVAQRLGMLHLEAGSNTV-- 127 A ++G+S D V + K+ EK G + F +++D++G + + G++ E GSN Sbjct: 62 GAVVIGVSTDSVEKNRKFA----EKHGFR--FKLVSDEKGEIGMKYGVVRGE-GSNLAAE 114 Query: 128 RAVFLIDPEGTVRLVLYYPPEVGRNIDEVVRVIRAFQLSDKLKVA 172 R F+ID EG +R +L ++ D + ++ L K + A Sbjct: 115 RVTFIIDREGNIRAILRNIRPAEKHADLALEEVKKLVLGKKAERA 159 >gi|14600604|ref|NP_147121.1| thiol peroxidase [Aeropyrum pernix K1] Length = 110 Score = 60.5 bits (145), Expect = 3e-11 Identities = 27/68 (39%), Positives = 44/68 (64%) Query: 12 IGEAFPEMEVQTTHGPKRLPSDYKGKWVVLFSHPADFTPVCTTEFVAFAKRYDQFKELNA 71 +G+ P++E+Q G S +G+ VVL+ +P FTP CT E + F Y++FK+L A Sbjct: 4 VGDPAPDIEIQLIDGSTIRLSQLRGRSVVLYFYPKAFTPGCTREAIGFNGLYEEFKKLGA 63 Query: 72 ELVGLSID 79 E++G+S+D Sbjct: 64 EVIGVSMD 71 >gi|118431740|ref|NP_148402.2| thiol peroxidase [Aeropyrum pernix K1] Length = 161 Score = 52.0 bits (123), Expect = 1e-08 Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 9/108 (8%) Query: 35 KGKWVVLFSHPADFTPVCTTEFVAFAKRYDQFKELNAELVGLSIDQVFSHIKWVEWIEEK 94 +G+ VL PA F+PVCT E F + Q ++ NAE++ +S+D + K+ + E + Sbjct: 29 RGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKD--ENR 86 Query: 95 LGVQIPFPIIADDQGRVAQRLGMLHLE-AGSNTV--RAVFLIDPEGTV 139 L F +++D V + + H + G V RAVF++ P+GTV Sbjct: 87 LA----FNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTV 130 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 236,742 Number of Sequences: 1700 Number of extensions: 10179 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 4 length of query: 217 length of database: 492,079 effective HSP length: 73 effective length of query: 144 effective length of database: 367,979 effective search space: 52988976 effective search space used: 52988976 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717985|ref|YP_003873517.1| sensor protein [Spirochaeta thermophila DSM 6192] (134 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 137,025 Number of Sequences: 1700 Number of extensions: 5542 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 134 length of database: 492,079 effective HSP length: 68 effective length of query: 66 effective length of database: 376,479 effective search space: 24847614 effective search space used: 24847614 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717986|ref|YP_003873518.1| transcriptional regulator protein [Spirochaeta thermophila DSM 6192] (709 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 698,414 Number of Sequences: 1700 Number of extensions: 30582 Number of successful extensions: 100 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100 Number of HSP's gapped (non-prelim): 0 length of query: 709 length of database: 492,079 effective HSP length: 83 effective length of query: 626 effective length of database: 350,979 effective search space: 219712854 effective search space used: 219712854 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717987|ref|YP_003873519.1| prolyl-tRNA synthetase [Spirochaeta thermophila DSM 6192] (577 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601997|ref|NP_148542.1| prolyl-tRNA synthetase [Aeropyrum p... 64 1e-11 >gi|14601997|ref|NP_148542.1| prolyl-tRNA synthetase [Aeropyrum pernix K1] Length = 485 Score = 63.9 bits (154), Expect = 1e-11 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 10/136 (7%) Query: 407 TPMQEERAVEIGHIFKLGDFYSQRMGLSFVDERGREIHPYMGSYGIGMGRLISMIVETNS 466 T M + RA++IG + LG +++ R HP+ SYG+ R+++ ++ + Sbjct: 219 TIMPDGRALQIGTVHHLGQSFTRAFDFRIQMRDERLDHPWQTSYGVS-DRVVASLIAVHG 277 Query: 467 DEHGIVWPPQVAPFMVFLMSI--------GNSLSMKRKVEALAEALGDRALLDDRHLS-P 517 D+ G+V PP VAP V ++ I G L+ K E G R +DDR P Sbjct: 278 DDRGLVIPPSVAPIQVVVIPITPGDEEKRGKVLTYTAKAAEALEKAGLRVHVDDREWERP 337 Query: 518 GRKFLDADLLGIPYRI 533 G KF + G+P R+ Sbjct: 338 GAKFYYWEAKGVPIRV 353 Score = 62.0 bits (149), Expect = 4e-11 Identities = 47/204 (23%), Positives = 92/204 (45%), Gaps = 14/204 (6%) Query: 11 TRMRYSQLFPHTLRTLPREHEGTPYGLLVKGGYVRGLGQGLYSFLPLGLRVFYKLKRLIA 70 +R ++S FP + E YG V+G+G ++P G ++ ++ ++ Sbjct: 6 SREKWSSDFPRWFDWVIETAEVYDYGRYP----VKGMGV----WMPYGFQIRRRVLEVVR 57 Query: 71 GEMKRLGGQEVLAPLVNPMELWERSGRDLLVGGDLVKFSDRAGRQ-----MVISPTHEEA 125 G + G +EVL PL+ P L R + V + GR+ + + PT E + Sbjct: 58 GLLDSTGHEEVLFPLLIPEHLLRRESEHIRGFEGEVYWVTHGGREELDVKLALRPTSETS 117 Query: 126 MVELLRQSMRSYRMLPVFLYQFQTKYRDEERVRIGLLRSREF-IMKDGYSFHRTYADLNN 184 + + ++SYR LP YQ + +R E + ++R RE K+ ++ H ++ D Sbjct: 118 ITYMETFWIKSYRQLPKKYYQVVSIFRYETKATRPMIRLREVTTFKEAHTVHESFEDAER 177 Query: 185 FFPKVFHAYERVFRTCNVPYIVAE 208 + Y+ +F +PY++++ Sbjct: 178 QVLEAIEVYKAIFDRLLIPYVISK 201 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 617,422 Number of Sequences: 1700 Number of extensions: 29325 Number of successful extensions: 103 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 100 Number of HSP's gapped (non-prelim): 2 length of query: 577 length of database: 492,079 effective HSP length: 82 effective length of query: 495 effective length of database: 352,679 effective search space: 174576105 effective search space used: 174576105 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717988|ref|YP_003873520.1| hypothetical protein STHERM_c02740 [Spirochaeta thermophila DSM 6192] (298 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 285,823 Number of Sequences: 1700 Number of extensions: 11527 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 298 length of database: 492,079 effective HSP length: 76 effective length of query: 222 effective length of database: 362,879 effective search space: 80559138 effective search space used: 80559138 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717989|ref|YP_003873521.1| glycerol-3-phosphate O-acyltransferase [Spirochaeta thermophila DSM 6192] (298 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 323,235 Number of Sequences: 1700 Number of extensions: 14591 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 0 length of query: 298 length of database: 492,079 effective HSP length: 76 effective length of query: 222 effective length of database: 362,879 effective search space: 80559138 effective search space used: 80559138 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717990|ref|YP_003873522.1| oligopeptide ABC transporter periplasmic oligopeptide-binding protein [Spirochaeta thermophila DSM 6192] (526 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601949|ref|NP_148494.1| dipeptide ABC transporter dipeptide... 139 1e-34 gi|118430987|ref|NP_147134.2| ABC transporter substrate-binding ... 103 8e-24 gi|118431437|ref|NP_147915.2| ABC transporter substrate-binding ... 67 1e-12 >gi|14601949|ref|NP_148494.1| dipeptide ABC transporter dipeptide-binding protein DppA [Aeropyrum pernix K1] Length = 515 Score = 139 bits (351), Expect = 1e-34 Identities = 129/483 (26%), Positives = 215/483 (44%), Gaps = 43/483 (8%) Query: 26 KEAKAVEFILNNGAEPESLDPHLISGVPEHRIYMALFEGLVAYDPETARAVPGLAESWEF 85 ++ A ++ + LDP + + GLV YD + VP LAE WE Sbjct: 29 RQQAANVIVIGTTDDVTELDPATSYDFFTWEVLSNVMAGLVTYDQQ-GNIVPYLAERWES 87 Query: 86 SPDRTSITFKLRKTT-WSDGTPITAQTVKDSWIRMLDPETAAPYAWFPAMFLKGAAEYNS 144 F LR+ + DGTP A V S R++ + +W F++ Sbjct: 88 QEGGKVWIFYLRQDAKFPDGTPCDADVVVRSIKRVMTIQ--GDPSWLVTEFVEN------ 139 Query: 145 GEAGPEALGVEVIDDYTLKVDLVGPLPYALDAFAHYSFAVVPLHAIEKYGNEWTRPE-NF 203 VE +D +T+K L P Y L A + P+H Y + P+ + Sbjct: 140 ---------VEALDQWTVKFTLKQPTGYFLAVVATPPY--YPVHP--NYPEDQPAPDATW 186 Query: 204 VGNGPFVLEAWNPQEKITCVPNEKYWDRDAVKLDRVAFLPIDDNNTSYNMYLNGELD--W 261 G GP++++ + + + PN ++ + K D V + + + GE+D W Sbjct: 187 GGCGPYMIDEFVRDQYLRLKPNPNFFGEEP-KNDGVIIRFYEGSEDLRSALEAGEIDVAW 245 Query: 262 QTTVPTDRIKEAQLRADYHVN--PILATYYYIFNNKRKPLDDPRVRKALSMAVNRKELVE 319 +T P+D E Y++ P L Y + + PLD+ VR+AL+ A++R+++V+ Sbjct: 246 RTLNPSDL--EDLRSKGYNIKEVPGLFIRYLVLRVSQPPLDNVAVRQALAAAIDRQDIVD 303 Query: 320 RVTQAGQIPAYGIVPP-MEG-YAGVK---GLGEDLERAKALLAEAGYPNGEGFPELTILY 374 RV + P Y +VP M G Y K G G +++ A+ LL++AGY ++ + Y Sbjct: 304 RVFRGTMEPLYSMVPSGMWGHYPAFKEKYGEGPNIDLARQLLSQAGYSESNKL-QVELWY 362 Query: 375 NTS---EGHKKIAEFIQQQWKVNLGIEVKLMNQEWKTYLATRRAGDFEIARAGWVGDYQD 431 + +A I++QW+ I V++ + EW TY+ +G I+ GW DY D Sbjct: 363 TPEHYGDTEAALAAVIKEQWEATGMISVEIKSSEWGTYVDQLSSGQMMISLLGWYPDYLD 422 Query: 432 PNTFLDMFV--TGGDMNDAFYSNPEYDALIHKAATMEPGPERFDVLMQAEELLITQDHAI 489 P+ FL F+ T Y+NP+ D L+ KA T ER + Q +E+L ++ Sbjct: 423 PDNFLTPFLLSTANSWTGTGYANPQVDDLLRKAMTSSDMNERAQLYKQVQEIL-AEEAPF 481 Query: 490 MPL 492 +PL Sbjct: 482 IPL 484 >gi|118430987|ref|NP_147134.2| ABC transporter substrate-binding protein precursor [Aeropyrum pernix K1] Length = 799 Score = 103 bits (258), Expect = 8e-24 Identities = 125/519 (24%), Positives = 215/519 (41%), Gaps = 60/519 (11%) Query: 40 EPESLDPHLISGVPEHRIYMALFEGLVAYDPETARAVPGLAESWEFSPDRTSITFKLRK- 98 EP+ LDP I ++E LV P LAE WE + T+ F +RK Sbjct: 281 EPQGLDPAFAHDTASAEIIDNVYERLVWTTKNFKEIKPWLAERWEIKDNGTTYIFYIRKG 340 Query: 99 TTWSDGTPITAQTVKDSWIRMLDPETAAPYAWFPAMFLKGAAEYNSGEAGPEAL--GVEV 156 + +G +TA V+ S+ R+L + P ++ + E P+ + + Sbjct: 341 VKFHNGEELTAYDVEYSFKRLLVLD-------LPQGHVRQIKPFLIDEWDPDQIDQAIRA 393 Query: 157 IDDYTLKVDLVGPL-PYALDAFAHYSFAVVPLHAIEKYG--------NEWTR-------- 199 ID YT+ L P P+ + Y+F ++ ++G +EW++ Sbjct: 394 IDKYTVVFKLKKPFAPFLRILASDYAFVIINKKWAIEHGDWDPSLPKSEWSKFRGKINDY 453 Query: 200 -PENFVGNGPFVLEAWNPQEKITCVPNEKYWDRDAVKLDRVAFLPIDDNNTSYNMYLNGE 258 N +G GP+ + W P ++I E YW A RV + + + +T M NG+ Sbjct: 454 IMRNPMGTGPYKMVEWVPGQRIVLERFEDYWQGPA-PTKRVVIMFVPELSTRLLMLKNGD 512 Query: 259 LDWQTTVPTDRIKEAQLRADYHVNPILAT-----YYYIFNNKRKP---------LDDPRV 304 +D +P + + + AT + FN + P D V Sbjct: 513 VD-IADIPVSYKSQVENVPGITIFTGAATNVVEFIQFNFNISKIPEGDTIWPDFFTDVNV 571 Query: 305 RKALSMAVNRKELVERVTQAGQIPAYGIVPP-MEGYAGVKGLGEDLERAKALLAEA--GY 361 RKA + A +E +E+ Q I A VPP GY D E+A +A G Sbjct: 572 RKAFAYAFPYEEFIEKAYQGLAIRARACVPPGWPGYVEAYNYEYDPEKAAEYFKKAWGGR 631 Query: 362 PNGEGFPELTILYNTSEGHKKIA-EFIQQQ-WKVNLGIEVKLMNQEWKTYLATRRAGDFE 419 EGF +T YN ++IA E + + K+N ++++ +W YL + +FE Sbjct: 632 VWEEGF-VITAFYNAGNEQRRIALELLAESLQKINPKFKLRVQALDWPVYL--EKMENFE 688 Query: 420 I---ARAGWVGDYQDPNTFLDMFVTGGDMNDAF---YSNPEYDALIHKAATMEPGPERFD 473 + A W+ +Y DP+ ++ + + + YSNP+ D LI K A +E P++ + Sbjct: 689 LPLFAIGDWI-NYLDPHIAVEQQLASYSLFQSLGGGYSNPKVDELI-KQAALETDPQKRE 746 Query: 474 VLMQAEELLITQDHAIMPLYFYVTINLIDTDKWGGWYPN 512 L + +L+ ++ Y T+ ++ D G++ N Sbjct: 747 ELYKQIQLIALREDVPQIYTVYPTVFVVMRDWIQGYFYN 785 >gi|118431437|ref|NP_147915.2| ABC transporter substrate-binding protein precursor [Aeropyrum pernix K1] Length = 748 Score = 67.0 bits (162), Expect = 1e-12 Identities = 64/269 (23%), Positives = 115/269 (42%), Gaps = 40/269 (14%) Query: 204 VGNGPFVLEAWNPQEKITCVPNEKYWDR---------DAVKLDRVAFLPIDDNNTSYNMY 254 + GP+ ++ + I N YW++ D + + FL DD + Sbjct: 468 IATGPYYVKDYKEGSYIILEYNPYYWNKELWQDLYGQDKPQHELAIFLINDDAVSRIETM 527 Query: 255 LNGELDWQTTVPTDRIKEAQLRA-----------DYHVNPILATYYYIFNNKRKPLDDPR 303 +G+ D +P DR+++ + A + ++P++ + + N ++P ++ + Sbjct: 528 KSGQAD-TGAIPLDRLEDIKGYALEGTNFQIIVEEKGLSPVIV--FIVLNAMKEPFNNTK 584 Query: 304 VRKALSMAVNRKELVERVTQAGQIPAYGIVPPMEGYAGVKGLGEDLE--------RAKAL 355 VR+AL A+ ++ V AG I V P AG G +D+ +A+ L Sbjct: 585 VRQALMYAIPFDQIKTSV-YAGYIERLNGVLP----AGFLGHNDDIVTQYEFNIVKAREL 639 Query: 356 LAEAGYPNGEGFPELTILYNTSEGHK-KIAEFIQQQWKVNLGIEVKLMNQEWKTYLATRR 414 + E+G + + I YN + K+A ++ W NLG V + EW T L+ Sbjct: 640 IKESGINPSDY--TIKIWYNKGNTQREKVANMLKTIWG-NLGFNVVVEPLEWPTLLSRTE 696 Query: 415 AGDFEIARAGWVGDYQDPNTFLDMFVTGG 443 GDF++ GW DY DP+ + GG Sbjct: 697 KGDFDVWIVGWAPDYLDPDNYAGPLFYGG 725 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 571,638 Number of Sequences: 1700 Number of extensions: 26751 Number of successful extensions: 77 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 5 length of query: 526 length of database: 492,079 effective HSP length: 81 effective length of query: 445 effective length of database: 354,379 effective search space: 157698655 effective search space used: 157698655 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717991|ref|YP_003873523.1| oligopeptide ABC transporter permease [Spirochaeta thermophila DSM 6192] (311 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431438|ref|NP_147917.2| ABC transporter permease [Aeropyru... 179 6e-47 gi|14601950|ref|NP_148495.1| dipeptide ABC transporter permease ... 156 7e-40 gi|14600616|ref|NP_147133.1| ABC transporter permease [Aeropyrum... 149 1e-37 gi|14601499|ref|NP_148038.1| peptide ABC transporter permease [A... 91 4e-20 gi|118430986|ref|NP_147132.2| ABC transporter permease [Aeropyru... 49 2e-07 gi|14601382|ref|NP_147918.1| ABC transporter permease [Aeropyrum... 45 3e-06 >gi|118431438|ref|NP_147917.2| ABC transporter permease [Aeropyrum pernix K1] Length = 332 Score = 179 bits (455), Expect = 6e-47 Identities = 108/332 (32%), Positives = 181/332 (54%), Gaps = 30/332 (9%) Query: 3 KYIVRRFLGLIPTLFIIVTLSFFIIRFAPGGPFD----AEKALPKQILENIEKKYHMDET 58 +++VRR L IPTL + ++F I PG P EKA P +++E I ++Y +D Sbjct: 6 RFLVRRLLTFIPTLVGVTFVTFLIATVVPGNPAKLWAGGEKASP-EVVEQIVREYRLDRP 64 Query: 59 ILMQYLRYMGDLVLRGDLGPSFKYQDHDVNYYIFTSLPNSLILGAVSLLIAVVLGMGTGA 118 QY +M L+ + P D+ I LP ++ L ++ + ++LG+ G Sbjct: 65 FWEQYFFFMYKLLTNTMISPVTSNYVWDM---IVERLPVTIQLTLLAFVFIILLGIPLGI 121 Query: 119 VSALYRNTWVDYTSMSIAIIGISVPLFVTGPVLMYFLAIKWKVLPTSGW------ITGRE 172 +SAL R+T +D +A++GISVP+F +L++ K++++ +G ITG Sbjct: 122 ISALTRDTIIDAAIRIMALVGISVPIFWLAYLLIFVFYTKYRLITLAGTPEPPYSITGIP 181 Query: 173 GLKTLIM---------------PALTLAFPYYANIARLFRASVLEVLQSDYIRTARAKGL 217 + ++IM PA TLA+P +ARL R S L+ + DY+ A+GL Sbjct: 182 LIDSIIMLDAATFEDVLRRYTIPAFTLAYPSIGFVARLVRNSFLDAMSGDYVEFMDARGL 241 Query: 218 STPVILFRHVFKGASIPVVSYLGPAFAGIVTGSVVVETIFRIPGLGRYFVQSAFNRDYTL 277 + +RH+ + +SIP+V+ LG F G++TG+ + ETIF +PGLG++ + S N DY Sbjct: 242 PS-TWKYRHILRNSSIPIVTVLGLIFGGLLTGAPITETIFGLPGLGKFLLDSINNYDYLS 300 Query: 278 ILGTVIVYSVILVLMNFVVDIIYGLLDPRISY 309 ++G V+ +I + +N +VDI Y ++DPR+ Y Sbjct: 301 LMGGVLFVGIIYLTVNLLVDITYAIIDPRVRY 332 >gi|14601950|ref|NP_148495.1| dipeptide ABC transporter permease DppB [Aeropyrum pernix K1] Length = 339 Score = 156 bits (394), Expect = 7e-40 Identities = 104/334 (31%), Positives = 170/334 (50%), Gaps = 30/334 (8%) Query: 3 KYIVRRFLGLIPTLFIIVTLSFFIIRFAPGGPFDAE---KALPKQILENIEKKYHMDETI 59 +Y V R L ++PT+ I+ T+ F ++R PG P A +++P + LE I ++ +D+ + Sbjct: 9 RYAVTRALAIVPTVLILYTVVFIVLRVIPGDPVTAALGTRSIPPEELEAIRERLGLDQPL 68 Query: 60 LMQYLRYMGDLVLRGDLGPSFKYQDHDVNYYIFTSLPNSLILGAVSLLIAVVLGMGTGAV 119 QY+ Y+ V+RGD G S V I P +L L +++VVLG+G+G V Sbjct: 69 WRQYIDYLLG-VMRGDFGESMTLYGRPVARDIMERFPATLELTIFGFIVSVVLGVGSGVV 127 Query: 120 SALYRNTWVDYTSMSIAIIGISVPLFVTGPVLMYFLAIKWKVLPTSGWITGREGLKT--- 176 +A +R VD + +I+ ++ + G +L Y +IK +LPT G I R L Sbjct: 128 AA-FRGGLVDRLLRTSSIVAYTLFIPWLGLMLKYVFSIKLGILPTGGRIDPRVNLDVVTG 186 Query: 177 ---------------------LIMPALTLAFPYYANIARLFRASVLEVLQSDYIRTARAK 215 LI+P+LTL RL R V E L+S+ RA+ Sbjct: 187 LYVLDSIITANPAALVSAVEHLILPSLTLGIVLSGVYTRLVRIHVAEALRSEVAVAYRAR 246 Query: 216 GLSTPVILFRHVFKGASIPVVSYLGPAFAGIVTGSVVVETIFRIPGLGRYFVQSAFNRDY 275 GL I H+ + + IP ++ +G FA ++ G+V+ E F PGLG V+ RDY Sbjct: 247 GLRESRIAV-HMLRISLIPTITMMGLQFAILLGGAVLTEATFSWPGLGSLLVERISYRDY 305 Query: 276 TLILGTVIVYSVILVLMNFVVDIIYGLLDPRISY 309 + I G + ++ ++ L++ +VDIIY +++PR+ Y Sbjct: 306 STIQGVTVFFAFMVGLVSLIVDIIYAIVNPRVRY 339 >gi|14600616|ref|NP_147133.1| ABC transporter permease [Aeropyrum pernix K1] Length = 342 Score = 149 bits (375), Expect = 1e-37 Identities = 98/341 (28%), Positives = 174/341 (51%), Gaps = 37/341 (10%) Query: 3 KYIVRRFLGLIPTLFIIVTLSFFIIRFA--PGGPFDAEKALPKQILENIEKKYHMDETIL 60 KYI+ RFL IPTLF + L F + R P + P+ + + + + YH D+ + Sbjct: 4 KYIIYRFLSAIPTLFGLSILVFILTRLVGDPAAIYIHPDMTPEDV-QRVRELYHFDDPLY 62 Query: 61 MQYLRYMGDLVLRGDLGPSFKYQDHDVNYYIFTSLPNSLILGAVSLLIAVVLGMGTGAVS 120 +QY+ ++ VL+GDLG S + V I + LP +L L + +++++G+ G + Sbjct: 63 VQYIYWLKG-VLQGDLGYSVT-ANMPVTEAIKSFLPATLELALYAFTLSIIVGVYLGTKA 120 Query: 121 ALYRNTWVDYTSMSIAIIGISVPLFVTGPVLMYF--------------LAIKWKVLPTSG 166 A ++ +D+ + +A+ G S+P+F +L+Y L +++K +P G Sbjct: 121 AANKDKLIDHLTRLLALSGYSMPVFWLALMLLYLFYNVLDFVGPGRLSLEVRFKYMPPYG 180 Query: 167 ---WITGR---------------EGLKTLIMPALTLAFPYYANIARLFRASVLEVLQSDY 208 + TG + +K LI P LT + + A R+ R+S++E + +Y Sbjct: 181 DFKFYTGLLTIDALLNRNIEVFIDAVKHLIPPVLTQTYIHIAIFIRVLRSSMIEEMNKEY 240 Query: 209 IRTARAKGLSTPVILFRHVFKGASIPVVSYLGPAFAGIVTGSVVVETIFRIPGLGRYFVQ 268 + A +KGL V+L +V + + I +V+ G F G+++G V+ ET+F PGLGR+ Sbjct: 241 VDFALSKGLRREVVLKDYVRRNSYISLVNVAGLQFVGLMSGVVLTETVFNWPGLGRFAAN 300 Query: 269 SAFNRDYTLILGTVIVYSVILVLMNFVVDIIYGLLDPRISY 309 +A D ++G + + +++N VDI+ LDPRI Y Sbjct: 301 AAIQLDPAAVVGFTLFVGTLFIVVNLAVDILLAYLDPRIRY 341 >gi|14601499|ref|NP_148038.1| peptide ABC transporter permease [Aeropyrum pernix K1] Length = 363 Score = 90.9 bits (224), Expect = 4e-20 Identities = 65/291 (22%), Positives = 127/291 (43%), Gaps = 26/291 (8%) Query: 43 KQILENIEKKYHMDETILMQYLRYMGDLV---LRGDLGP---SFKYQDHDVNYYIFTSLP 96 +Q+ EN+ ++Y + + + L+ + D G S+ + + + ++ Sbjct: 68 RQLYENLMERYGLTGNFVQDVATWTVKLIKSNITFDFGVTQYSYIGGTNVIGDILLLAMK 127 Query: 97 NSLILGAVSLLIAVVLGMGTGAVSALYRNTWVDYTSMSIAIIGISVPLFVTGPVLMYFLA 156 N+ IL + LI +G+ G A + D +I S P + +++ + Sbjct: 128 NTAILFLTATLITFAIGIILGFQMARKPGSIFDRGLSVFGMISWSFPTWWVAIIMILIFS 187 Query: 157 IKWKVLPTSGWITGRE--------------------GLKTLIMPALTLAFPYYANIARLF 196 ++ P E LK + MP +T+ + + L Sbjct: 188 FYLRLFPAQAQYVYFELSKLPPDLPLFEKIVEQAKIWLKYMTMPVMTIVLVSFGGASYLI 247 Query: 197 RASVLEVLQSDYIRTARAKGLSTPVILFRHVFKGASIPVVSYLGPAFAGIVTGSVVVETI 256 R VL +LQ D++ ARA+GL +++ HV + +S P+V+YL + G G+++ E + Sbjct: 248 RNIVLGILQEDFVTAARARGLPERRVIYGHVLRTSSPPIVTYLALSIVGAFGGAIITEAV 307 Query: 257 FRIPGLGRYFVQSAFNRDYTLILGTVIVYSVILVLMNFVVDIIYGLLDPRI 307 F PG+G + + D +++ + V +V +L ++D IY LLDPR+ Sbjct: 308 FGWPGMGLVYWIAIQQSDAKVLVASTWVLTVFFILTILILDFIYSLLDPRV 358 >gi|118430986|ref|NP_147132.2| ABC transporter permease [Aeropyrum pernix K1] Length = 301 Score = 48.5 bits (114), Expect = 2e-07 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 26/190 (13%) Query: 74 GDLGPSFKYQDHDVNYYIFTSLPNSLILGAVSLLIAVVLGMGTGAVSALYRNTWVDYTSM 133 G GP Y D+ Y + SL + + + +AV +G+ G++SA + +D M Sbjct: 75 GTSGPPGYY---DIYYGVIWGTRISLRISLIVVGVAVAIGVVVGSISAYFGGI-IDNILM 130 Query: 134 SIAIIGISVPLFVTGPVLMYFLAIKWKVLPTSGWITGREGLKTLIMPALTLAFPYYANIA 193 I + +S+P G +L +A + L+ +I+ + + +P YA Sbjct: 131 RITEVFLSLP----GLILAMAIASMME-----------RSLQNMILALIAVWWPAYA--- 172 Query: 194 RLFRASVLEVLQSDYIRTARAKGLSTPVILFRHVFKGASIPVVSYLGPAFAGIVTGSVVV 253 R+ RA VL V Y+ A+ GL+T I+ RH+ SI V + G+V V+V Sbjct: 173 RIVRAEVLRVKNEPYVEAAKILGLNTYRIIARHILPN-SIYTVLVIASMDLGLV---VLV 228 Query: 254 ETIFRIPGLG 263 + GLG Sbjct: 229 ASGLGFLGLG 238 >gi|14601382|ref|NP_147918.1| ABC transporter permease [Aeropyrum pernix K1] Length = 387 Score = 44.7 bits (104), Expect = 3e-06 Identities = 62/251 (24%), Positives = 102/251 (40%), Gaps = 51/251 (20%) Query: 93 TSLPNSLILGAVSLLIAVVLGMGTGAVSALYRNTWVDYTSMSIAIIGISVPLFVTGPVLM 152 TS +++ AV I ++LG+ +G YR VD M + V +F+ P L+ Sbjct: 147 TSFIVVILVMAVGPWIGILLGLFSG-----YRGGVVDEVIMRV------VDVFLAFPGLI 195 Query: 153 YFLAIKWKVLPTS------------GWITGREGLKT--------LIMPALTLAFPYYANI 192 +A+ VLP+ G + LK L++ + L ++ Sbjct: 196 LAIALS-AVLPSRLDPIIINNELLLGTLLRLFALKPEDALPMVRLVVVVIALWIVWWPVY 254 Query: 193 ARLFRASVLEVLQSDYIRTARAKGLSTPVILFRHVFKGASIPVVSYLGPAFAGIVTGSVV 252 ARL R VL ++ Y+ ARA G+ T IL H+ PV+ YL F + ++ Sbjct: 255 ARLVRGMVLSARENTYVEAARALGIPTHSILLGHILPNILGPVLVYLTLDFGAV----IL 310 Query: 253 VETIFRIPGLGR-----------YFVQSAFNRDYTLIL--GTVIVYSVILVLMNFVVDII 299 VE GLG Y + + L+ G I+++V+ N + D + Sbjct: 311 VEAGLSFLGLGAVPPIADWGRIIYDGAQYYPNAWWLVFFPGLAILFTVL--GFNLLGDAL 368 Query: 300 YGLLDPRISYR 310 ++DPR R Sbjct: 369 RDIMDPRTRRR 379 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.146 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 326,741 Number of Sequences: 1700 Number of extensions: 14692 Number of successful extensions: 81 Number of sequences better than 1.0e-04: 6 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 6 length of query: 311 length of database: 492,079 effective HSP length: 77 effective length of query: 234 effective length of database: 361,179 effective search space: 84515886 effective search space used: 84515886 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717992|ref|YP_003873524.1| oligopeptide ABC transporter permease, inner membrane component [Spirochaeta thermophila DSM 6192] (367 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601382|ref|NP_147918.1| ABC transporter permease [Aeropyrum... 171 2e-44 gi|118430986|ref|NP_147132.2| ABC transporter permease [Aeropyru... 157 4e-40 gi|118431518|ref|NP_148037.2| peptide ABC transporter permease [... 137 3e-34 gi|14601951|ref|NP_148496.1| dipeptide ABC transporter permease ... 137 4e-34 gi|14601499|ref|NP_148038.1| peptide ABC transporter permease [A... 43 1e-05 >gi|14601382|ref|NP_147918.1| ABC transporter permease [Aeropyrum pernix K1] Length = 387 Score = 171 bits (434), Expect = 2e-44 Identities = 96/262 (36%), Positives = 140/262 (53%), Gaps = 31/262 (11%) Query: 137 INPHTRVYVLGTDYLGRDMLARIIYGGQISIAIGVIGTLTSVLIGILVGAIAGYLGGRVD 196 I P T LG D GRD+L+RI+YG + S + ++ IGIL+G +GY GG VD Sbjct: 119 IEPGTYKLWLGADEYGRDLLSRILYGARTSFIVVILVMAVGPWIGILLGLFSGYRGGVVD 178 Query: 197 YILMRIVDVMYGLPYMLIVIILMAIFGNNM--------------FNLF------------ 230 ++MR+VDV P +++ I L A+ + + LF Sbjct: 179 EVIMRVVDVFLAFPGLILAIALSAVLPSRLDPIIINNELLLGTLLRLFALKPEDALPMVR 238 Query: 231 -----FALALVSWLTVARVVRGQIISLKNAEFVEAARAMGAPTSRIIFRHLVPNTLGVII 285 AL +V W AR+VRG ++S + +VEAARA+G PT I+ H++PN LG ++ Sbjct: 239 LVVVVIALWIVWWPVYARLVRGMVLSARENTYVEAARALGIPTHSILLGHILPNILGPVL 298 Query: 286 VFSSLRIPSFIMMEAFLSFLGLGISAPYASWGSLIRDGVEGMTLYPWRLFFPALAMTLFL 345 V+ +L + I++EA LSFLGLG P A WG +I DG + W +FFP LA+ + Sbjct: 299 VYLTLDFGAVILVEAGLSFLGLGAVPPIADWGRIIYDGAQYYPNAWWLVFFPGLAILFTV 358 Query: 346 FAMNFLGDGLRDAFDPKSKNAL 367 N LGD LRD DP+++ + Sbjct: 359 LGFNLLGDALRDIMDPRTRRRI 380 >gi|118430986|ref|NP_147132.2| ABC transporter permease [Aeropyrum pernix K1] Length = 301 Score = 157 bits (397), Expect = 4e-40 Identities = 77/212 (36%), Positives = 133/212 (62%), Gaps = 1/212 (0%) Query: 154 DMLARIIYGGQISIAIGVIGTLTSVLIGILVGAIAGYLGGRVDYILMRIVDVMYGLPYML 213 D+ +I+G +IS+ I +I +V IG++VG+I+ Y GG +D ILMRI +V LP ++ Sbjct: 84 DIYYGVIWGTRISLRISLIVVGVAVAIGVVVGSISAYFGGIIDNILMRITEVFLSLPGLI 143 Query: 214 IVIILMAIFGNNMFNLFFALALVSWLTVARVVRGQIISLKNAEFVEAARAMGAPTSRIIF 273 + + + ++ ++ N+ AL V W AR+VR +++ +KN +VEAA+ +G T RII Sbjct: 144 LAMAIASMMERSLQNMILALIAVWWPAYARIVRAEVLRVKNEPYVEAAKILGLNTYRIIA 203 Query: 274 RHLVPNTLGVIIVFSSLRIPSFIMMEAFLSFLGLGISAPYASWGSLIRDGVEGMTLYP-W 332 RH++PN++ ++V +S+ + +++ + L FLGLG A WG +I +G + W Sbjct: 204 RHILPNSIYTVLVIASMDLGLVVLVASGLGFLGLGAQPGTAEWGIMISEGRNWLLQGAWW 263 Query: 333 RLFFPALAMTLFLFAMNFLGDGLRDAFDPKSK 364 +FFP +A+ L++ + LGDGLRD DP+++ Sbjct: 264 PVFFPGIAIFLWVLGWSLLGDGLRDVLDPRTR 295 >gi|118431518|ref|NP_148037.2| peptide ABC transporter permease [Aeropyrum pernix K1] Length = 521 Score = 137 bits (346), Expect = 3e-34 Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 4/223 (1%) Query: 145 VLGTDYLGRDMLARIIYGGQISIAIGVIGTLTSVLIGILVGAIAGYLGGRVDYILMRIVD 204 +LGTD GRD+ ++YG + ++ +G++ + +V+ G L G ++GYLGG D +++R Sbjct: 299 LLGTDDQGRDLFQGLLYGTRWALIVGLLTSAITVVFGSLYGIVSGYLGGIADEVMLRFAQ 358 Query: 205 VMYGLPYMLIVIILMAIFGNNMFNLFFALALVSWLTVARVVRGQIISLKNAEFVEAARAM 264 ++Y LP + ++I+ AI G N++ + F + SW +A V R +K+ +VEAA A Sbjct: 359 IIYSLPALPLLILFAAIIGGNIWVIIFLIVAFSWPGIAFVTRSMAFQIKSEPYVEAAIAS 418 Query: 265 GAPTSRIIFRHLVPNTLGVIIVFSSLRIPSFIMMEAFLSFLGLGISAPYASWGSLI---R 321 GA T RI+ +L P L + +L +P ++ EA LSFL LG +WG ++ + Sbjct: 419 GAGTVRIVLLYLAPQVLPYMFASMALSVPGAVIAEASLSFLNLG-DPDLVTWGKILFEAQ 477 Query: 322 DGVEGMTLYPWRLFFPALAMTLFLFAMNFLGDGLRDAFDPKSK 364 D + Y W + P LA+ + F+G+ L +PK K Sbjct: 478 DAGAALNGYWWWVIPPGLAIAVVGMTFVFIGNALDAILNPKLK 520 >gi|14601951|ref|NP_148496.1| dipeptide ABC transporter permease DppC [Aeropyrum pernix K1] Length = 280 Score = 137 bits (345), Expect = 4e-34 Identities = 69/234 (29%), Positives = 129/234 (55%), Gaps = 1/234 (0%) Query: 127 HDRIVVDGKEINPHTRVYVLGTDYLGRDMLARIIYGGQISIAIGVIGTLTSVLIGILVGA 186 H ++ + +P + + GT+ +G DM +R++ G +I + + ++ ++ + +G+ +G Sbjct: 42 HSKVSDVPEHPSPPSLKHPFGTNEIGYDMFSRVVLGTRIVLKVVLLSSVMGLAVGVPLGL 101 Query: 187 IAGYLGGRVDYILMRIVDVMYGLPYMLIVIILMAIFGNNMFNLFFALALVSWLTVARVVR 246 ++GY GG VD +L ++D +Y P +++ I + ++ G ++ N AL +V R+ R Sbjct: 102 VSGYFGGPVDRVLSVVMDSLYAFPGIVLAIAIASVLGPSVLNAAIALMVVYVPAYFRMTR 161 Query: 247 GQIISLKNAEFVEAARAMGAPTSRIIFRHLVPNTLGVIIVFSSLRIPSFIMMEAFLSFLG 306 ++I +K +++ A R +GAP SRI+FRH++P + ++V L I+ EA LSF G Sbjct: 162 ARVIEIKTQDYIVALRVLGAPHSRIMFRHVLPGVMPTVLVVYGLASADAILTEAGLSFFG 221 Query: 307 LGISAPYASWGSLIRDGVEGMTLYPWRL-FFPALAMTLFLFAMNFLGDGLRDAF 359 L ++ P WG I G++ W L FP LA+ +G+GL + F Sbjct: 222 LVVTYPAPDWGLDISYGIKQFLSGSWWLTLFPGLAILTLALGFAMIGEGLAERF 275 >gi|14601499|ref|NP_148038.1| peptide ABC transporter permease [Aeropyrum pernix K1] Length = 363 Score = 43.1 bits (100), Expect = 1e-05 Identities = 35/173 (20%), Positives = 73/173 (42%), Gaps = 15/173 (8%) Query: 194 RVDYILMRIVDVMYGLPYMLIVIILMAIFGNNMFNLFFALALVSWLTVARVVRGQIISLK 253 + Y+ + + LP ++ I+ M + LVS+ + ++R ++ + Sbjct: 196 QAQYVYFELSKLPPDLPLFEKIVEQAKIWLKYMTMPVMTIVLVSFGGASYLIRNIVLGIL 255 Query: 254 NAEFVEAARAMGAPTSRIIFRHLVPNTLGVIIVFSSLRI----PSFIMMEAFLSFLGLGI 309 +FV AARA G P R+I+ H++ + I+ + +L I I+ EA + G+G+ Sbjct: 256 QEDFVTAARARGLPERRVIYGHVLRTSSPPIVTYLALSIVGAFGGAIITEAVFGWPGMGL 315 Query: 310 SAPYASWGSLIRDGVEGMTLYPWRLFFPALAMTLFLFAMNFLGDGLRDAFDPK 362 W ++ + + + W +T+F + D + DP+ Sbjct: 316 ----VYWIAIQQSDAKVLVASTW-------VLTVFFILTILILDFIYSLLDPR 357 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.143 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 364,467 Number of Sequences: 1700 Number of extensions: 16633 Number of successful extensions: 95 Number of sequences better than 1.0e-04: 5 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 86 Number of HSP's gapped (non-prelim): 6 length of query: 367 length of database: 492,079 effective HSP length: 78 effective length of query: 289 effective length of database: 359,479 effective search space: 103889431 effective search space used: 103889431 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717993|ref|YP_003873525.1| oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein [Spirochaeta thermophila DSM 6192] (328 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 314 2e-87 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 302 7e-84 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 285 1e-78 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 263 3e-72 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 226 5e-61 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 220 4e-59 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 219 1e-58 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 201 2e-53 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 110 6e-26 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 108 2e-25 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 108 2e-25 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 105 1e-24 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 102 1e-23 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 102 1e-23 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 99 1e-22 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 97 4e-22 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 90 7e-20 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 90 7e-20 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 87 7e-19 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 82 1e-17 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 80 7e-17 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 79 2e-16 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 76 1e-15 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 76 1e-15 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 75 2e-15 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 72 2e-14 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 71 4e-14 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 69 1e-13 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 69 1e-13 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 69 2e-13 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 69 2e-13 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 67 6e-13 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 66 1e-12 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 65 3e-12 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 62 2e-11 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 58 3e-10 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 46 1e-06 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 44 7e-06 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 314 bits (804), Expect = 2e-87 Identities = 164/323 (50%), Positives = 217/323 (67%), Gaps = 7/323 (2%) Query: 1 MSDTVLQVEDLRTYFRTDDGVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVP 60 M+ +L VEDL+TYF T G+VKAVDGVSF++R GE++GI GESG GKS + S++ LVP Sbjct: 1 MAQELLVVEDLKTYFYTLRGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVP 60 Query: 61 SPPGKIVGGRILFQGKDLLELPEKEMRG-IRGKDISMIFQDPMTSLNPFLRISTQMIETI 119 PPG+IVGGRI+ G D+ + E E+R +R K +SM+FQ M L P + Q+ E + Sbjct: 61 -PPGRIVGGRIMIDGMDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVL 119 Query: 120 RLHQGLEAKAAREKAVEMLSLVGIPSPHKRI-DAYPHQFSGGMRQRVMIAMALSCNPKIL 178 ++H+G+ AR++ E+L VG+ H+ I D YPH+ SGG +QRV+IAMAL+ P I+ Sbjct: 120 QIHRGVGRHEARQRVYELLESVGL---HRSIADRYPHELSGGQKQRVVIAMALALEPDIV 176 Query: 179 IADEPTTALDVTIQAQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEE 238 IADEPTTALDV +QAQIL+L+K LA S+ILITHDL V+A + V +MY G+I E Sbjct: 177 IADEPTTALDVVVQAQILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEY 236 Query: 239 APVDRLFASAAHPYTSALINSVPRLDKPRGRRLFSIPGQPPNLIDLPECCPFYPRCPKAM 298 P D +F HPYT AL+ ++P+L P RL IPG PP+L + P C F+PRCPKA Sbjct: 237 GPSDAVFTKPQHPYTQALLKAIPKLRGPID-RLAYIPGSPPDLRNPPPGCRFHPRCPKAF 295 Query: 299 DVCKRAYPPETVLEDGHTVKCWL 321 D C R PP + DGH CWL Sbjct: 296 DRCSREEPPLFRVGDGHLSACWL 318 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 302 bits (774), Expect = 7e-84 Identities = 161/324 (49%), Positives = 216/324 (66%), Gaps = 8/324 (2%) Query: 3 DTVLQVEDLRTYFRTDDGVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSP 62 D +++VE+L+ YF T G+VKA++ VSF + GE +VGE+GCGKSVTS ++ RL+ P Sbjct: 7 DPIIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLI-YP 65 Query: 63 PGKIVGGRILFQGK-----DLLELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIE 117 PG+IV G+I + + D++ L EKE+R IRG++I+ IFQDP +L+P I Q+ E Sbjct: 66 PGRIVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGE 125 Query: 118 TIRLHQGLEA-KAAREKAVEMLSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPK 176 T+ H + + + +AV +L V +P P KR+ +YPH+ SGGM+QR +I ++LS PK Sbjct: 126 TMLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPK 185 Query: 177 ILIADEPTTALDVTIQAQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIV 236 +LIADEPTTALDVTIQAQI+DL+ L G +++LITH+LG+VA C+RV VMYAG IV Sbjct: 186 LLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIV 245 Query: 237 EEAPVDRLFASAAHPYTSALINSVPRLDKPRGRRLFSIPGQPPNLIDLPECCPFYPRCPK 296 EEAPVD LF++ HPYT ALI +VP + L IPG PNLI P C F+PRCP Sbjct: 246 EEAPVDELFSNPLHPYTRALIRAVPN-PLAKIENLEHIPGTVPNLITPPPGCRFHPRCPL 304 Query: 297 AMDVCKRAYPPETVLEDGHTVKCW 320 A D C R P GH CW Sbjct: 305 AFDRCSREKPLLKEYSPGHKAACW 328 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 285 bits (729), Expect = 1e-78 Identities = 153/317 (48%), Positives = 205/317 (64%), Gaps = 8/317 (2%) Query: 5 VLQVEDLRTYFRTDDGVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPG 64 VL ++DL+ ++ T G+V+AVDGVS SV GE + IVGESG GKS +LS+ RL+ PPG Sbjct: 3 VLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLI-MPPG 61 Query: 65 KIVGGRILFQGKDLLELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQG 124 +IVGGRIL+ G DLL L +E+R RG++I M+FQDP L+P+ + +Q+ E++ L G Sbjct: 62 RIVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESL-LEHG 120 Query: 125 LEAKA--AREKAVEMLSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADE 182 L + A A + L LVGIP R YPHQ SGG RQRV IA A++ PKILIADE Sbjct: 121 LASSGSEAESMAGDALELVGIP--RDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADE 178 Query: 183 PTTALDVTIQAQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPVD 242 PTTALDV +QA+I+DLMK L G +V+L+THD+G+ A +R+ VMYAG +VE P + Sbjct: 179 PTTALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAE 238 Query: 243 RLFASAAHPYTSALINSVPRLDKPRGRRLFSIPGQPPNLIDLPECCPFYPRCPKAMDVCK 302 + ++ HPYT LI SVP D R + IPG PP+L + P C F+PRCP +C Sbjct: 239 DVVSNPIHPYTEMLIKSVP--DPWEDREVKPIPGSPPDLRNPPPGCRFHPRCPLRQPLCT 296 Query: 303 RAYPPETVLEDGHTVKC 319 P +++ G C Sbjct: 297 NTRPSLRMVDGGRGHSC 313 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 263 bits (673), Expect = 3e-72 Identities = 148/326 (45%), Positives = 197/326 (60%), Gaps = 12/326 (3%) Query: 1 MSDTVLQVEDLRTYFRTDDGVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVP 60 MS+ VL + DL + T GVV A+DGV V GEI+ IVGESGCGKS + S+ R++P Sbjct: 1 MSEIVLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILP 60 Query: 61 SPPGKIVGGRILFQGK----DLLELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMI 116 S G IL G DL+ L E E+ IRGK +SMIFQDP +L+P ++ Q+ Sbjct: 61 SNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVT 120 Query: 117 ETIRLHQGLEAKAAREKAVEMLSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPK 176 + H E + + A E+L + +P+PH ++ YPH+ SGGM+QR++IA +L P+ Sbjct: 121 D----HVSGEKRRVEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPR 176 Query: 177 ILIADEPTTALDVTIQAQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIV 236 I+IADEPTTALDVT+QAQIL ++ L T++ILITH+L V A + +R+ VMYAG +V Sbjct: 177 IIIADEPTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVV 236 Query: 237 EEAPVDRLFASAAHPYTSALINSVPRLDKPR-GRRLFSIPGQPPNLIDLPECCPFYPRCP 295 E A V LF HPYT L+ S+P KP + I G+PP+L D P C F+PRCP Sbjct: 237 EVADVFSLFERPLHPYTKGLLKSIP---KPHVDEEIEPIRGEPPSLADPPPGCRFHPRCP 293 Query: 296 KAMDVCKRAYPPETVLEDGHTVKCWL 321 MDVC R P G V C L Sbjct: 294 YVMDVCMRIKPRLEERAPGRLVACHL 319 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 226 bits (577), Expect = 5e-61 Identities = 132/361 (36%), Positives = 193/361 (53%), Gaps = 49/361 (13%) Query: 5 VLQVEDLRTYFRTDDGV-----------VKAVDGVSFSVRAGEIVGIVGESGCGKSVTSL 53 VL+VEDLR +F + VKAVDGVSFS+ GE+ +VGESGCGK+ T Sbjct: 19 VLRVEDLRVWFPLRRSITELITMKPQRFVKAVDGVSFSIARGEVFCLVGESGCGKTTTGK 78 Query: 54 SVMRLVPSPPGKIVGGRILFQGK--------------------DLLELPEKEMRGIRGKD 93 +++RLV K GGR+ F+ K DLL +P ++ + +R ++ Sbjct: 79 AILRLV-----KATGGRVFFKPKKEVLEELERRGVKSLGDGFVDLLAVPRRKFKPLR-RE 132 Query: 94 ISMIFQDPMTSLNPFLRISTQMIETIRLHQGLEAKAAREKAVEMLSLVGIPSPHKRIDAY 153 + +++QDP SLNP I + + + +H A+ E ML V + +D Y Sbjct: 133 LQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNAREREEMVARMLEAVKLTPASDFMDRY 192 Query: 154 PHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQILDLMKDLAHRFGTSVILI 213 PHQ SGG RQRV IA A NP +++ADEP + LDV+I+A+IL+L+ + GTS++ I Sbjct: 193 PHQLSGGQRQRVAIARAFILNPSLVVADEPVSMLDVSIRAEILELLLGFREKLGTSLLFI 252 Query: 214 THDLGVVAGMCNRVHVMYAGRIVEEAPVDRLFASAAHPYTSALINSVPRLDKPRGRRLFS 273 THDL V +C+R+ VMY G+IVE R+ HPYT AL+ ++P D ++L Sbjct: 253 THDLAVARYICDRIAVMYLGKIVETGDARRIIERPIHPYTKALVAAIPEPDPSNRKKLRE 312 Query: 274 IP--GQPPNLIDLPECCPFYPRC-------PKAMDVCKRAYPP---ETVLEDGHTVKCWL 321 +P G+ P+ +P C F+PRC + ++C PP T E+ V CW Sbjct: 313 VPIKGEIPSAAAIPPGCRFHPRCVEYEQDMDRLREMCPVKEPPLKRPTEGEEDRRVSCWR 372 Query: 322 Y 322 Y Sbjct: 373 Y 373 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 220 bits (560), Expect = 4e-59 Identities = 124/301 (41%), Positives = 178/301 (59%), Gaps = 12/301 (3%) Query: 22 VKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRILFQGKDLLEL 81 VKAVD V+ + G+ +G+VGESG GK+ ++RL GGRI F G D+++L Sbjct: 49 VKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEP-----TGGRIFFDGIDVMKL 103 Query: 82 PEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQGLEAKAAREKAVEMLSLV 141 + ++ R + +IFQDP SLNP I + E I++H G++ +E V +L V Sbjct: 104 RGRGLKEFRRR-AQIIFQDPYGSLNPRKTIFNLIAEPIKVH-GIKVGDLQEYIVSLLYQV 161 Query: 142 GIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQILDLMKD 201 G+ H + YPH+FSGG RQR+ IA L+ P+ ++ DEPT+ALDV++QAQIL+L+KD Sbjct: 162 GLNETH--LYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKD 219 Query: 202 LAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPVDRLFASAAHPYTSALINSVP 261 L ++ + + I+HDLGVV M + + VMY G+IVE + +F HPYT L+ S+P Sbjct: 220 LQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEVFEKPLHPYTKVLLESIP 279 Query: 262 RLDK--PRGRRLFSIPGQPPNLIDLPECCPFYPRCPKAMDVCKRAYPPETVLEDGHTVKC 319 D + R I G+PP+ I+ P C F RCP A+D C PP +E GH V C Sbjct: 280 VPDPEVAKRRSRIRIKGEPPSPINPPSGCRFRTRCPIAVDKCLEE-PPLEEVERGHWVAC 338 Query: 320 W 320 W Sbjct: 339 W 339 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 219 bits (557), Expect = 1e-58 Identities = 123/310 (39%), Positives = 179/310 (57%), Gaps = 10/310 (3%) Query: 19 DGVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLV-PSPPGKIVGGRILFQGKD 77 D VV+AVDGV +R GE++ IVGESGCGK+ +++ + PS G I ++G+ Sbjct: 32 DAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSD------GAIYYRGEL 85 Query: 78 LLELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQGLEAKAAREKAVEM 137 L R +R K + M+FQDP SL+P + + Q+ E + +H + AR +AVEM Sbjct: 86 LTPHRLARDRRLRRK-LQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEM 144 Query: 138 LSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQILD 197 L VG+ + PHQ SGG RQRV IA L P++++ADEP + +DV+++A ILD Sbjct: 145 LETVGLTPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILD 204 Query: 198 LMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPVDRLFASAAHPYTSALI 257 L+ D R G +++LITHD+ V + +R+ VMY G+IVE + + HPYT+AL+ Sbjct: 205 LIMDYHRRTGATIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVIENPRHPYTAALV 264 Query: 258 NSVPRLDKPRGRRLFSIPGQPPNLIDLPECCPFYPRCPKAMDVCKRAYPPETVLEDGHTV 317 S P + + R R F I G+ P+ + +P C F+PRCP A +C R+ P V E G Sbjct: 265 TSTPSISRRRPPR-FPISGEVPSAVAIPPGCRFHPRCPLASSLC-RSREPALVEEGGRLY 322 Query: 318 KCWLYAEEGS 327 C E GS Sbjct: 323 ACHHPLEPGS 332 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 201 bits (511), Expect = 2e-53 Identities = 129/337 (38%), Positives = 192/337 (56%), Gaps = 45/337 (13%) Query: 6 LQVEDLRTYFRTDD-------GVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRL 58 L + D+R YF G VKAVDGVS S++ GEI+G+VGESG GK+ + +++ L Sbjct: 4 LALHDVRVYFPITTFYLKKVIGYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGL 63 Query: 59 VPSPPGKIVGGRILFQGKDLLELPEKEMRG--IRGKDIS--------------------- 95 G + + ++ + + E RG ++ +DI Sbjct: 64 HRPFTGHVFIDIDKGELEEAVSIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKK 123 Query: 96 ------MIFQDPMTSLNPFLRISTQMIETIRLHQGLE--AKAAREKAVEMLSLVGIPSPH 147 M+ QDP +SLNP +++ + E +R+H G+E ++ + + +E+L VG+ Sbjct: 124 FRRKVQMVQQDPYSSLNPRMKVGEIIGEPVRVH-GIEKSSEGVKRRVIEVLEAVGLGKEF 182 Query: 148 KRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQILDLMKDLAHRFG 207 D YP++ SGG RQRV IA AL+ NPKIL+ DEPT+ALDV+IQAQIL L+++L ++G Sbjct: 183 A--DRYPYELSGGQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYG 240 Query: 208 TSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPVDRLFASAAHPYTSALINSVPRLDKPR 267 + +LITHD+ VV M + V VMY+G+I+E AP LF + HPYT L+++VP + PR Sbjct: 241 LTYLLITHDISVVRYMSSSVVVMYSGKIMESAPKHILFTNPLHPYTKLLLSAVP-IPDPR 299 Query: 268 GRRL--FSIPGQPPNLIDLPECCPFYPRCPKA-MDVC 301 RR+ F G+PPN P C F RCP A ++C Sbjct: 300 SRRIKEFKDIGEPPNPAKPPVGCRFVTRCPIASREIC 336 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 110 bits (274), Expect = 6e-26 Identities = 79/233 (33%), Positives = 127/233 (54%), Gaps = 15/233 (6%) Query: 3 DTVLQVEDLRTYFRTDDGVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSP 62 D + VE + + + + A+ VS SV GE++ I+G SG GK+ T L+++ V P Sbjct: 8 DLAVVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKT-TLLNIIAGVDRP 66 Query: 63 PGKIVGGRILFQGKDLLELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLH 122 GR++ G ++ +E+R R + + +FQ +L P L +E I L Sbjct: 67 NA----GRVIVDGFEVSSAGGEELRRFRLERVGYVFQQH--NLIPTLTA----LENILLP 116 Query: 123 QGLEAKAAREKAVEMLSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADE 182 L KA R + E+L VG+ +R YP + SGG +QR+ +A+AL+ +P I++ADE Sbjct: 117 MALAGKANRLRGQELLRRVGLGGKERR---YPEELSGGEQQRLAVAVALANDPPIIVADE 173 Query: 183 PTTALDVTIQAQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRI 235 PT LD+ +I+ ++ + AH G +V+L THD VA M +RV V+ GR+ Sbjct: 174 PTGELDIATGERIVRILLEEAHSRGKTVVLTTHD-PRVARMADRVAVIEDGRL 225 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 108 bits (270), Expect = 2e-25 Identities = 77/270 (28%), Positives = 141/270 (52%), Gaps = 32/270 (11%) Query: 19 DGVVK------AVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRIL 72 +G+VK A+ G+ ++ GE V ++G SGCGK+ T+L ++ + P GR+ Sbjct: 7 EGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKT-TTLRIVAGLERPDA----GRVY 61 Query: 73 FQGKDLLELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQGLEAKAARE 132 F G+D+ LP K+ ++++M+FQ +L P +R+ + +++ + + R Sbjct: 62 FDGRDVTGLPPKD------RNVAMVFQS--YALWPHMRVFDNIAFPLKIKKLPRDEIVRR 113 Query: 133 K--AVEMLSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVT 190 A E+L + + +D YPHQ SGG +QRV +A A+ P++L+ DEP + LD Sbjct: 114 VRWAAELLEIDHL------LDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAI 167 Query: 191 IQAQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPVDRLFASAAH 250 ++ ++ +K L R G ++I +THD + +R+ VM G I + ++ A+ Sbjct: 168 LRIKMRSEIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDVYHRPAN 227 Query: 251 PYTSALINSVPRLD----KPRGRRLFSIPG 276 + + I S P+++ K G RL ++ G Sbjct: 228 TFVATFIGS-PQMNLFSGKVAGGRLEALGG 256 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 108 bits (269), Expect = 2e-25 Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 19/247 (7%) Query: 17 TDDGVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRILFQGK 76 TD ++K G+SF + G + I+G SG GKS + RL+ PG V G + Sbjct: 16 TDKHILK---GISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNM 72 Query: 77 DLLELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQGLEAKAAREKAVE 136 ++++ +R G M+FQ+P NPF ++ + E + + L A +K ++ Sbjct: 73 NVMKEDPYNIRRYTG----MVFQEP----NPFPHMT--IYENVAIGPKLHGLAKNKKELD 122 Query: 137 MLSLVGIPSPH------KRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVT 190 + + H R+ YPHQ SGG RQR+ +A AL+ P++L+ DEPT +D Sbjct: 123 EIVEWALKMAHLWDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPV 182 Query: 191 IQAQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPVDRLFASAAH 250 +I + + A +VI++TH A + +++ +Y GR++E P L H Sbjct: 183 STVKIEQSIVEYAKEEMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELVLRPRH 242 Query: 251 PYTSALI 257 T + Sbjct: 243 ELTKKFL 249 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 105 bits (263), Expect = 1e-24 Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 19/245 (7%) Query: 20 GVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRILFQGKDLL 79 G V AVD V S++ GE ++G SGCGK+ T+L ++ + P GRIL G+D+ Sbjct: 14 GKVVAVDHVDLSIKDGEFFVLLGPSGCGKT-TTLRLIAGLEYPDE----GRILIDGEDVT 68 Query: 80 ELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQ---GLEAKAAREKAVE 136 K+ ++++M+FQ+ +L P + + + T+ L + GL R + +E Sbjct: 69 FKDPKD------RNVAMVFQN--YALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIE 120 Query: 137 MLSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQIL 196 + L+ I +D P Q SGG +QRV +A AL PK+ + DEP + LD ++ + Sbjct: 121 VAKLLRIED---LLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMR 177 Query: 197 DLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPVDRLFASAAHPYTSAL 256 +K L + + +THD M +R+ VM GR+V+ + ++ H + + Sbjct: 178 AELKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEVYMRPKHTFVATF 237 Query: 257 INSVP 261 I + P Sbjct: 238 IGAPP 242 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 102 bits (255), Expect = 1e-23 Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 12/222 (5%) Query: 23 KAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRILFQGKDLLELP 82 K + GV S+ GE + I+G SG GKS ++ RLV G IV F+G D+ L Sbjct: 18 KVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIV-----FRGVDVTRLS 72 Query: 83 EKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQGLEAKAAREKAVEMLSLVG 142 ++R +R K + + SL P + + + + GL + A E+AV+ LS++G Sbjct: 73 GSQLRMVRRK---IGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAEERAVKYLSMLG 129 Query: 143 IPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQILDLMKDL 202 I R +P + SGG +QR +A AL+ P IL+ DEPT+ALD +A +L+ + + Sbjct: 130 IEDLAHR---HPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEALFRV 186 Query: 203 AHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPVDRL 244 A G ++I++TH+ + +R+ M G + EE L Sbjct: 187 A-TLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSEL 227 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 102 bits (254), Expect = 1e-23 Identities = 71/246 (28%), Positives = 120/246 (48%), Gaps = 17/246 (6%) Query: 20 GVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRILFQGKDLL 79 G V+A+ GVSFS I ++G SGCGK+ T L V+ + P GR+ F G D Sbjct: 16 GEVEALRGVSFSFPESSITAVLGPSGCGKT-TMLKVIAGLLKPRR----GRVFFGGVDYT 70 Query: 80 ELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQGLEAKAAREKAVEMLS 139 LP + + + +FQD +L P + + + +R +G R + L Sbjct: 71 GLPPER------RSVGFVFQD--LALFPHMTVYDNVAFGLRA-RGFSGGEVRRQVEWALE 121 Query: 140 LVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQILDLM 199 VG+ P + + SGG +QRV +A A++ P +L+ DEP + LD I+ ++L + Sbjct: 122 TVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAEL 181 Query: 200 KDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPVDRLFASAAHPYTSALI-- 257 K L + G+++I +THD + + + +M GRIV+ ++ A+ Y + Sbjct: 182 KRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEVYTRPANVYVATFFGD 241 Query: 258 -NSVPR 262 N +P+ Sbjct: 242 ANIIPK 247 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 99.0 bits (245), Expect = 1e-22 Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 21/247 (8%) Query: 20 GVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRILFQGKDLL 79 G A+D VS ++ GEI ++G SGCGK+ T+L V+ +P GR+ +D+ Sbjct: 14 GNTVALDRVSLNISDGEIFTLLGPSGCGKT-TTLRVIAGFETPDE----GRVYIGSRDVT 68 Query: 80 ELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQGLEAKAAREK--AVEM 137 L E ++ +M+FQ+ +L P +R+ + ++L + ++ R A E+ Sbjct: 69 MLKPYE------RNTAMVFQN--YALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWAAEL 120 Query: 138 LSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQILD 197 L + + +D YPHQ SGG +QRV +A A+ P++L+ DEP + LD ++ ++ + Sbjct: 121 LEIDHL------LDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMRE 174 Query: 198 LMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPVDRLFASAAHPYTSALI 257 + L R G +++ +THD + +RV VM GR+ + ++ A + + I Sbjct: 175 EIVRLQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVYEKPATYFVATFI 234 Query: 258 NSVPRLD 264 LD Sbjct: 235 GRSTVLD 241 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 97.4 bits (241), Expect = 4e-22 Identities = 75/261 (28%), Positives = 127/261 (48%), Gaps = 21/261 (8%) Query: 20 GVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRILFQGKDLL 79 G V AV V+ + E V I+G SG GK+ T L ++ + P GRI F D+ Sbjct: 14 GNVVAVRDVNLYIEDKEFVSILGPSGSGKT-TLLYLIAGIYKPSR----GRIYFNDVDVT 68 Query: 80 ELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQGLEAKAAREKAVEMLS 139 +LP + ++I ++FQ+ +L P + + + +RL E A +EK + + Sbjct: 69 DLPPNK------RNIGLVFQN--YALYPHMTVYENIAFPLRLRNFGEP-AIKEKVLSVAK 119 Query: 140 LVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQILDLM 199 L+GI +D YP Q SGG +QRV +A AL P++L+ DEP + LD ++ +I + Sbjct: 120 LLGIEG---LLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSEL 176 Query: 200 KDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPVDRLFASAAHPYTSALINS 259 K L G + I +THD M +R+ ++ +G I + ++ + + ++ I + Sbjct: 177 KKLQKELGITAIYVTHDQSEALAMADRIAIIASGVIQQVGKPWDVYYKPRNVFVASFIGT 236 Query: 260 VP----RLDKPRGRRLFSIPG 276 P + RR +PG Sbjct: 237 PPANLVSVPLDSSRRCLLLPG 257 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 90.1 bits (222), Expect = 7e-20 Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 19/230 (8%) Query: 18 DDGVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRILFQGKD 77 D G +AVDGVSF + GE+ ++G +G GK+ T + L+ + G G Sbjct: 15 DYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLL-----RPTSGEAWIAGYS 69 Query: 78 LLELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQGLEAKAAREKAVEM 137 ++ P R I + D M+ + + RL+ GL + ARE+ E+ Sbjct: 70 IVREPGNVRRVIGLVPQDLTADDEMSGWD-------NVYIQARLY-GLPSSEARERTREV 121 Query: 138 LSLVGI-PSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQIL 196 L + + + H+R+ Y SGGMR+++ IAM+L +PK+L DEPT LDV + + Sbjct: 122 LDYLDLMEAAHRRVATY----SGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLW 177 Query: 197 DLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPVDRLFA 246 ++DL R +++L TH + + +RV ++ GRIV E + L A Sbjct: 178 RYIEDL-KRSAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEELKA 226 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 90.1 bits (222), Expect = 7e-20 Identities = 69/231 (29%), Positives = 119/231 (51%), Gaps = 19/231 (8%) Query: 20 GVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRILFQGKDLL 79 G V A+D VS VR GEI+GI+G +G GK+ + L+V+ V P GR+ F+G+D+ Sbjct: 12 GGVTALDNVSVEVRRGEILGIIGPNGAGKT-SLLNVITGVYKPQR----GRVYFKGRDIT 66 Query: 80 ELPEKEM------RGIRGKDI---SMIFQDPMTSLNPFLRISTQMIETIRLHQGLEAKAA 130 L + R + ++ + ++ M L+P+ R S A Sbjct: 67 GLKPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWEVEA 126 Query: 131 REKAVEMLSLVGIPSP-HKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDV 189 RE+A ++ L+ + H I A P G++++V +A AL+ NP++++ DEP L Sbjct: 127 RERAEHVIDLLDLHEHRHSPIGALPP----GIQKKVDLAGALAQNPEVVLMDEPMAGLSK 182 Query: 190 TIQAQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAP 240 + I+ + + + T+++LI HD+ VV +C+RV VM G+++ E P Sbjct: 183 EEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGP 233 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 86.7 bits (213), Expect = 7e-19 Identities = 70/254 (27%), Positives = 124/254 (48%), Gaps = 28/254 (11%) Query: 3 DTVLQVEDLRTYFRTDDGVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSP 62 D +L+VEDL F G + A+D V+ + G++ ++G +G GK+ T ++V+ P Sbjct: 4 DIILRVEDLEKRF----GGIVALDKVNLEIERGKVTLLIGPNGSGKT-TLVNVISGFYKP 58 Query: 63 PGKIVGGRILFQGKDLLELPEKEMRGIRGKDISMIFQDP-----MTSLNPFLRISTQMIE 117 G GR+LF+G+D+ + E+ + + FQ P +T L L + E Sbjct: 59 DG----GRVLFKGRDITGMSPHEISKL---GLVRTFQIPKPFTNLTVLENVLTAADSPGE 111 Query: 118 TI-------RLHQGLEAKAAREKAVEMLSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMA 170 + RL G E +AA +A E+L VG+ R + SGG + + IA A Sbjct: 112 NVYLAGLARRLWLGFEKRAAA-RAFEILGWVGLDHMWDRRSG---ELSGGQMKLLEIARA 167 Query: 171 LSCNPKILIADEPTTALDVTIQAQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVM 230 + +++I DEP ++ + I++ +K LA G + ++I H +G+V +RV+ M Sbjct: 168 IMKGAEMIIMDEPAAGVNPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAM 227 Query: 231 YAGRIVEEAPVDRL 244 G+++ D + Sbjct: 228 SMGKVIASGKPDEV 241 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 82.4 bits (202), Expect = 1e-17 Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 30/250 (12%) Query: 1 MSDTVLQVEDLRTYFRTDDGVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVP 60 M++ +L+V+ + Y+ G +A+ GVS V GEIV ++G +G GK+ T L++ L+ Sbjct: 2 MAEPLLEVKSIDVYY----GEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLL- 56 Query: 61 SPPGKIVGGRILFQGKDLLELP--EKEMRGI----RGKDISMIFQDPMTSLNPFLRISTQ 114 K G I++QG+D+ LP ++ GI G+ I P ++ LR++ Sbjct: 57 ----KPRNGSIIWQGRDITGLPAFKRVEEGISHVPEGRGIF-----PRLTVYENLRVAAS 107 Query: 115 MIETIRLHQGLEAKAAREKAVEMLSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCN 174 AK + ++E + + P R SGG +Q + IA AL Sbjct: 108 T---------RRAKEHFQDSLEQVYTI-FPILKARRSQLAGTLSGGEQQMLAIARALIQR 157 Query: 175 PKILIADEPTTALDVTIQAQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGR 234 P +L+ DEP+ L + ++ L L G +++L+ ++G+ + +R +VM GR Sbjct: 158 PILLMMDEPSLGLAPKLARDVIYLASRLREELGVTILLVEQNVGLSLKVADRGYVMETGR 217 Query: 235 IVEEAPVDRL 244 IV E D L Sbjct: 218 IVLEGASDEL 227 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 80.1 bits (196), Expect = 7e-17 Identities = 82/271 (30%), Positives = 122/271 (45%), Gaps = 45/271 (16%) Query: 22 VKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRILFQGKDLLEL 81 VKA+D V F++RAGE+ ++GE+G GK+ ++MR++ +G ++ K Sbjct: 26 VKALDNVDFTLRAGEVHALLGENGAGKT----TLMRILYGEIKPTMGEIYVWGRKVSWRG 81 Query: 82 PEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMI-ETIRLH---QGLEAKAAREKAVEM 137 P +R I+M++Q F + + + E I ++ GL AR + +E Sbjct: 82 PWDAIR----NGIAMVYQQ-------FRLVESMTVEENIAIYLSSLGLGRSEARRRTLET 130 Query: 138 LSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPT---TALDVTIQAQ 194 +G+ + A G RQRV I ALS K+LI DEPT T L+ Sbjct: 131 AERLGLEIDLAKTVA---DLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFS 187 Query: 195 ILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRI---------VEEAPVDRLF 245 L L+KD+ G SV+ ITH LG V + +RV V+ GR+ E + RL Sbjct: 188 TLRLLKDM----GVSVVYITHKLGEVVRVADRVTVLRRGRVSAVIEDVGRTSEEELARLM 243 Query: 246 ASAAHPYTSALINSVPRLDKPRGRRLFSIPG 276 P T PR GR L S+ G Sbjct: 244 VGTLPPPT-------PRPPGKVGRELLSVRG 267 Score = 67.0 bits (162), Expect = 6e-13 Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 18/223 (8%) Query: 20 GVVKAVDGV------SFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKI-VGGRIL 72 GV VDGV S VR GEIVGI G +G G+ +++ L G I V GR + Sbjct: 267 GVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEVQGRRI 326 Query: 73 FQGKDLLELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQGLEAKAARE 132 D + G RGK ++M + + FL + +T+ L + R Sbjct: 327 EGSLDFYRAGGGYIAGDRGKVLAMDYS--VAENIAFLYYTAS--KTLLLRRSRLEDLFR- 381 Query: 133 KAVEMLSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQ 192 + VE LV SP + + SGG +Q+V++ + K+L+A PT LD+ Sbjct: 382 RLVERFRLVA-RSPWTPVG----RLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATT 436 Query: 193 AQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRI 235 + + +L+ +LA R G ++L++ DL + + +R++VM GR+ Sbjct: 437 SFVRNLLSELA-RQGAGILLVSTDLDEILELSDRIYVMSGGRV 478 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 79.0 bits (193), Expect = 2e-16 Identities = 69/247 (27%), Positives = 107/247 (43%), Gaps = 27/247 (10%) Query: 3 DTVLQVEDLRTYFRTDDGVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSP 62 DTVL+ + +R +D V V GE VG+VG +G GK+ + L Sbjct: 2 DTVLEARGVVKKYRGQP----VLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRD 57 Query: 63 PGKIVGGRILFQGKDLLELPEKEMRGIRGKDISMIFQDP-MTSLNPFLRISTQMIETIRL 121 GGR+L G D P +E R G + ++F+ P + S P + I Sbjct: 58 -----GGRVLLNGLD----PWREPRAREG--VGVVFERPNLPSSMPVVEFLESAAAIIGS 106 Query: 122 HQGLEAKAAREKAVEMLSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIAD 181 A R +E P Q S G++QR IA AL P+ L+AD Sbjct: 107 SPSRVDWAIRAAGLEGHEWKTFP-----------QLSAGLKQRAAIAHALLGEPRFLVAD 155 Query: 182 EPTTALDVTIQAQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPV 241 EPT+ LD + ++L L+ L G S+++ +H + + + R++V+ GR+ E Sbjct: 156 EPTSNLDPLERREVLRLLARLNREHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSP 215 Query: 242 DRLFASA 248 + LF A Sbjct: 216 EDLFRRA 222 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 75.9 bits (185), Expect = 1e-15 Identities = 59/226 (26%), Positives = 108/226 (47%), Gaps = 22/226 (9%) Query: 22 VKAVDGVSFSVRAGEIVGIVGESGCGKS--VTSLSVMRLVPSPPGKIVGGRILFQGKDLL 79 ++A+DGV V G + ++G +G GK+ V LS + L S ++ G ++ + ++ Sbjct: 26 IRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANNVR 85 Query: 80 ELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQGLEAKAAREKAVEMLS 139 + G R + D + + G+ + A+ + E+L Sbjct: 86 SRIGVVLGGERALYWRLSGWDNLWFFSQLY--------------GIPPREAKRRVKELLE 131 Query: 140 LVGIPS-PHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQILDL 198 +VG+ H R++ Y S GM+QR+ IA L +P++L+ DEPT LD ++ + Sbjct: 132 IVGLEEWAHVRVENY----SKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSI 187 Query: 199 MKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPVDRL 244 ++ + R G +V+L TH + + +RV ++ GRIV E P + L Sbjct: 188 IRRIV-REGRTVLLTTHYMVEAEELSDRVAIISKGRIVAEGPPEDL 232 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 75.9 bits (185), Expect = 1e-15 Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 26/225 (11%) Query: 19 DGVVKAVDG------VSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRIL 72 +GV K + G VS +V G + G+VG +G GK+ +++ L + G++ Sbjct: 12 EGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVA----- 66 Query: 73 FQGKDLLELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQGLEAKAARE 132 LL P + G + ++ + +D P+ ++ E +RL+ + E Sbjct: 67 -----LLGEPVERAGGSLFRRVAYLPEDG----EPYRNMTGH--EFLRLYASIYGVEDLE 115 Query: 133 KAVEMLS-LVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTI 191 +E S L G+ R+ +S GMR+R+++A L+ P + + DEPT LD Sbjct: 116 GYLEEASRLSGLGG---RLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVY 172 Query: 192 QAQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIV 236 I L+K+ + R G +V+L +H++ V +C+ + ++ +GRIV Sbjct: 173 SVGIRRLLKEYSERHGVTVLLSSHNMYEVESVCSEITMISSGRIV 217 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 75.1 bits (183), Expect = 2e-15 Identities = 71/215 (33%), Positives = 105/215 (48%), Gaps = 23/215 (10%) Query: 24 AVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRILFQGKDLLELPE 83 AV GVSFSV GE I+G +G GK+ T L ++ V P G G + G D+ Sbjct: 19 AVAGVSFSVGDGERACIMGPNGSGKT-TLLRMVSGVLRPSG----GSVRVCGYDVWGDGW 73 Query: 84 KEMRGIRGKDISMIFQDPMTSLNPFLRIST--QMIETIRLHQGLEAKAAREKAVEMLSLV 141 +E RG+ I QDP P R T + I + GL AR +A +L ++ Sbjct: 74 REARGL----IGFAPQDP-----PMARRMTGAEYITVVGGLLGLSPGVARREARRVLEML 124 Query: 142 GIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQILDLMKD 201 G R+ A + SGG R+ + IA+AL+ NP++++ DEP + LDV + L Sbjct: 125 GFEDVLGRVVA---RLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARE---SLWAS 178 Query: 202 LAHRF-GTSVILITHDLGVVAGMCNRVHVMYAGRI 235 L F G +V+ +HD +RV +M+ GR+ Sbjct: 179 LRKAFKGRTVLFSSHDPQEAEAESDRVLIMHRGRL 213 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 71.6 bits (174), Expect = 2e-14 Identities = 64/234 (27%), Positives = 116/234 (49%), Gaps = 19/234 (8%) Query: 5 VLQVEDLRTYFRTDDGVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPG 64 +L V D+ F G ++A+ GVSFSVR GE VG++G +G GK+ T +++ + P Sbjct: 4 ILDVRDVYKRF----GGIEALKGVSFSVRRGERVGLIGPNGAGKT-TLFNIISGIYMPD- 57 Query: 65 KIVGGRILFQGKDLLELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQG 124 GR++++G D+ P R G I+ FQ N L + +I L Sbjct: 58 ---RGRVIYKGVDITGWPAYR-RSRAG--IARTFQIVRPLAN--LTVLNNVIVGALLRTN 109 Query: 125 LEAKAAREKAVEMLSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPT 184 + + ARE+A+E + +VG+ + D + ++R+ +A AL+ P++L+ DE Sbjct: 110 -DIREARERAMEAIDMVGLAG---KEDILAKDLNLIEKKRLELARALATQPELLLLDEIA 165 Query: 185 TALDVTIQAQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEE 238 L ++ + +++ R G ++I++ H + V RV V++ G + E Sbjct: 166 AGLRPREVDDLVYTLLEISKR-GITIIMVEHVMRAVMNFAERVIVLHFGEKIAE 218 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 70.9 bits (172), Expect = 4e-14 Identities = 61/247 (24%), Positives = 116/247 (46%), Gaps = 22/247 (8%) Query: 1 MSDTVLQVEDLRTYFRTDDGVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVP 60 M D ++++ED+ + G ++ + VS + G I IVG +G GKS ++ Sbjct: 1 MGDWIIKLEDVSAGY----GKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTT 56 Query: 61 SPPGKIVGGRILFQGKDLLELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIR 120 + GR+LF+ D+ +P + I ++ IFQ L R T + E +R Sbjct: 57 -----VYKGRVLFENTDVTHMPPHDRAKI---GMTFIFQ-----LENIFRELT-VYENLR 102 Query: 121 LH-QGLEAKAAREKAVEMLSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILI 179 L L R++ E+ S+ P +R+ SGG RQ + +A+ + PK+ + Sbjct: 103 LAGYDLPEDVFRDRLEEVFSM--FPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFL 160 Query: 180 ADEPTTALDVTIQAQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEA 239 DEPT L + ++L ++ + ++ G +V+L+ ++ + ++ ++ GRI + Sbjct: 161 IDEPTAGLSPKLAKEVLSYVR-ILNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDG 219 Query: 240 PVDRLFA 246 P + L A Sbjct: 220 PAEELLA 226 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 69.3 bits (168), Expect = 1e-13 Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 21/218 (9%) Query: 28 VSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRILFQGKDLLELPEKEMR 87 V F ++ GE+ ++G +G GKS +M ++V G IL G+ + ELP +E R Sbjct: 21 VDFDLKYGEVHAVMGPNGSGKSSLGYVIMG---REIYEVVEGDILLDGESIKELPPEE-R 76 Query: 88 GIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQGLE--AKAAREKAV----EMLSLV 141 ++G I M QDP P +R+S+ +I + G + +K A K V E + + Sbjct: 77 ALKG--IFMAQQDPPQI--PGVRLSSLIIAFVNKRLGAQDLSKPADPKIVKRMYEYATKL 132 Query: 142 GIPSP--HKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQILDLM 199 G+ ++ ++ FSGG ++R + A+ +PKI+I DEP + LD+ + + + Sbjct: 133 GLDREILNREVNV---GFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGLKIVAEFI 189 Query: 200 KDLAHRFGTSVILITHDLGVVAGM-CNRVHVMYAGRIV 236 K L G V+LITH ++ + +RV V+Y G ++ Sbjct: 190 KQLRDS-GRGVMLITHYARLLNFVEPDRVTVLYRGSVL 226 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 69.3 bits (168), Expect = 1e-13 Identities = 63/236 (26%), Positives = 115/236 (48%), Gaps = 23/236 (9%) Query: 6 LQVEDLRTYFRTDDGVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGK 65 ++VEDL + + + GV+ R +V I+G +G GK+ +++ L+ K Sbjct: 3 VRVEDLTVAYNGEP----VLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLI-----K 53 Query: 66 IVGGRILFQGKDLLELPEKEMRGIRGKDISMIFQDPMT-SLNPFLRISTQMIETIRLHQG 124 GR+ G + PE + G+ + Q+P L+P + +ET +G Sbjct: 54 PARGRVFLDGFEATGRPE-----MVGRYAGYVPQNPSAPKLSPMT--VREFVETSLRLRG 106 Query: 125 LEAKAAREKAVEMLSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPT 184 + ARE+AVE+L +GI + +++ + S GM QRV IA A++ +PK+L+ DEP Sbjct: 107 VTR--ARERAVEVLHTLGIRG--EVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPL 162 Query: 185 TALDVTIQAQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAP 240 ++D + +I ++ LA V++ +HD ++ G + + V+ I P Sbjct: 163 ASVDPAGRMEIARIIAGLARE--RLVLMTSHDPSLLLGHTDIIVVINRDLIASGPP 216 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 68.9 bits (167), Expect = 2e-13 Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 24/229 (10%) Query: 21 VVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRILFQGKDLLE 80 VV+A+ GVSFSV GEI +G +G GK+ T++ ++ + P G G G D+++ Sbjct: 24 VVEALKGVSFSVYEGEIYSFLGPNGAGKT-TTVRILSTLLDPDG----GEARVAGFDVVK 78 Query: 81 LPEKEMRGIRGKDISMI--FQDPMT---SLNPFLRISTQMIETIRLHQGLEAKAAREKAV 135 E+R G +S+ F +T +L F RI G+ + + Sbjct: 79 -ERWEVRKRIGVMLSVERGFYWKLTGRENLYYFGRI-----------YGIPQGELKSRIK 126 Query: 136 EMLSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQI 195 E+L LVG+ + D + S GM+ R+ +A L +P++LI DEPT LD I Sbjct: 127 EVLDLVGL-TDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTI 185 Query: 196 LDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPVDRL 244 +++ LA G ++ + TH++ + +RV ++ GRI E D L Sbjct: 186 RGVIRSLASE-GRTIFITTHNMVEAEMISDRVGIIIGGRIAMEGTPDEL 233 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 68.9 bits (167), Expect = 2e-13 Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 12/223 (5%) Query: 22 VKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRILFQGKDLLEL 81 + + +S SV G I ++G +G GK+ +V ++ G++ G I +G+D+ Sbjct: 18 ILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITN- 76 Query: 82 PEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQGLEAKAAREKAVEMLSLV 141 +E I + + + M F ++T E + A A+R+ +LS Sbjct: 77 --REPDEIARRGVIYV----MEGRRIFKELTT---EENLVSVAYAAGASRDDIRSVLSY- 126 Query: 142 GIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQILDLMKD 201 P +R+ SGG +Q + IAMAL PK+L+ DEP+ L I +QI +K Sbjct: 127 -FPRLKERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKM 185 Query: 202 LAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPVDRL 244 L G +++L + + + +V+ GRIV E + L Sbjct: 186 LHREEGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEEL 228 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 67.0 bits (162), Expect = 6e-13 Identities = 72/239 (30%), Positives = 114/239 (47%), Gaps = 24/239 (10%) Query: 6 LQVEDLRTYFRTDDGVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGK 65 L VEDL + G V A+ GV+ S AG + ++GE+G GK+ ++M +V P K Sbjct: 5 LAVEDLDVVY---PGGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVV--KPRK 59 Query: 66 IVGGRILFQGKDLLELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRL---H 122 GRIL G +L P+ +R I M Q+P + P ++ + T+ + Sbjct: 60 ---GRILVDGYEL--RPKGPGDSLR-SGIYMASQNP--PVYPGIKAYEDLAVTLMVAGRK 111 Query: 123 QGL-EAKAAREKAVEMLSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIAD 181 GL +A+ +A E L L P D Y + RQR+ + AL+ + ++ D Sbjct: 112 AGLRQARTMLAEASEALGLNIDP------DRYLGEMGFSERQRLEVIKALALGSRAVLLD 165 Query: 182 EPTTALDVTIQAQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAP 240 EPTT L A++L+ LA G +V+L+TH +G +R+ ++ G V E P Sbjct: 166 EPTTHLTPEEAARMLEAAGRLA-ASGAAVLLVTHRIGEAMEHADRLVILRKGVKVYEGP 223 Score = 61.2 bits (147), Expect = 3e-11 Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 20/208 (9%) Query: 32 VRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRILFQGKDLLELPEKEMRGIRG 91 VR GE+VG+ G +G G+ ++ L P K GRIL G D+ P R + Sbjct: 277 VRQGEVVGVAGVAGNGQEELFEVIVGL--RKPAK---GRILIAGVDVTRAPPLARRRL-- 329 Query: 92 KDISMIFQDPMT-SLNPFLRISTQM---IETIRLHQGLEAKAAREKAVEMLSLVGIP--S 145 + +I ++ + +L P I+ + I T R ++ + + A EM+ +GI S Sbjct: 330 -GLGVIPEERLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGIKAVS 388 Query: 146 PHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQILDLMKDLAHR 205 P + +D + SGG QR+++A L P++L+A P LD+ Q + ++M+ + R Sbjct: 389 PRQMVD----ELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRMSSER 444 Query: 206 FGTSVILITHDLGVVAGMCNRVHVMYAG 233 G V++I DL + + N+++V G Sbjct: 445 GG--VLVIDEDLDFLLRVSNKIYVASGG 470 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 66.2 bits (160), Expect = 1e-12 Identities = 67/242 (27%), Positives = 108/242 (44%), Gaps = 29/242 (11%) Query: 5 VLQVEDLRTYFRTDDGVVKAVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPG 64 V++VE L + G V+A+ GVSFSV +GE+ G +G +G GK+ T +M G Sbjct: 4 VIEVEGLVKRY----GSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSG 59 Query: 65 --KIVGGRILFQGKDLLELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLH 122 ++ G +EL G+R + + + + + RL Sbjct: 60 SARVFG----------VELYNPGASGVRRR---VGYVPGEFEFYGGVSGGRMLDYWCRLV 106 Query: 123 QGLEAKAAREKAVEMLSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADE 182 G RE L P P +R +S GM+Q + + MA S P +++ DE Sbjct: 107 GGCSRGVVREL------LEAFPLPLERAVG---TYSRGMKQMLALVMAFSHEPDLVVMDE 157 Query: 183 PTTALDVTIQAQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPVD 242 PTT LD + ++LD ++ A R G +V +H L V + +RV ++ +G +V V Sbjct: 158 PTTGLDPLARGRVLDFVRSKA-REGVTVFFSSHVLSEVQRVADRVGLLRSGVLVALEDVS 216 Query: 243 RL 244 L Sbjct: 217 SL 218 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 64.7 bits (156), Expect = 3e-12 Identities = 58/210 (27%), Positives = 105/210 (50%), Gaps = 30/210 (14%) Query: 33 RAGEIVGIVGESGCGKSVTSLSVMRLVPSPP-GKIVGGRILFQGKDLLELPEKE--MRGI 89 R G++VG++G +G GK+ T+L ++ P G++ GG PE + ++ Sbjct: 104 REGQVVGLLGRNGTGKT-TALRILAGELKPNLGRVEGGE-----------PEWDEILKRF 151 Query: 90 RGKDISMIFQDPMTSLNPFLRIS--TQMIETI------RLHQGLEAKAAREKAVEMLSLV 141 RG ++ F+ + LR++ Q +E + R+ L+ R A+E+ V Sbjct: 152 RGSELQTYFRKLVDGK---LRVAHKIQYVELVPRRLKGRVRDLLKRADERGVALELAEQV 208 Query: 142 GIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQILDLMKD 201 G+ K D Q SGG Q+++I LS + + I DEP++ LD+ + ++ L+ Sbjct: 209 GLD---KVFDRDVRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAG 265 Query: 202 LAHRFGTSVILITHDLGVVAGMCNRVHVMY 231 A R G V+++ HDL V+ + + VH++Y Sbjct: 266 AA-RPGAYVMVVEHDLAVLDYVSDLVHILY 294 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 62.0 bits (149), Expect = 2e-11 Identities = 58/231 (25%), Positives = 110/231 (47%), Gaps = 22/231 (9%) Query: 20 GVVKAVDG------VSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRILF 73 GV K+V G VS SV+ GEI + G +G GK+ + ++ L+ G+ R+L Sbjct: 19 GVAKSVKGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGE---ARVL- 74 Query: 74 QGKDLLELPEKEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQGLEAKAAREK 133 G D + ++G ++ + +D S+ L ++ RL+ G + Sbjct: 75 -GVDPWGGGFERVKG----EVGYLPED--ASVYERLTGMENILFYARLYSGWRDVEELVE 127 Query: 134 AVEMLSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQA 193 S + +R Y S GM++R+++ + L P++++ DEPT+ +D Sbjct: 128 NAVFYSGLSREDLARRAGGY----SKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASN 183 Query: 194 QILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPVDRL 244 +I +++ L+ R G ++++ THDL + + +RV +++ G V P RL Sbjct: 184 RIKKILRGLS-REGRAILVTTHDLALAEEIADRVTIIHGGSTVASGPPYRL 233 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 58.2 bits (139), Expect = 3e-10 Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 26/237 (10%) Query: 24 AVDGVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRILFQGKDLLELPE 83 A V F+ +G I+G++G +G GK+ +++ LV G+I L+E Sbjct: 19 AYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEI-----------LVEGVN 66 Query: 84 KEMRGIRGKDISMIFQDPMTSLNPFLRISTQMIETIRLHQGLEAKAAREKAVEMLSLVGI 143 G K + I P + P ++ET+ +G + AR +A E L +VG+ Sbjct: 67 PRSPGFE-KLLPRIGYVPELPVVPLWTTPCILLETLARLEGYTSVEARVRAREALEVVGL 125 Query: 144 PSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQILDLMKDLA 203 + + S G R+RV++A A ++L+ DEP + LD ++ +L++ +A Sbjct: 126 AG---ECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVA 182 Query: 204 HRFGTSVILITHDLGVVAGMCNRVHVMYAGRI----VEE-----APVDRLFASAAHP 251 R G +VI+ +H L + + V V+ ++ +EE + R+ S A P Sbjct: 183 -REGATVIVSSHILRELEDIATHVLVLKTDQLFYGSIEELRAWLSGTPRIILSVAEP 238 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 45.8 bits (107), Expect = 1e-06 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 32/217 (14%) Query: 27 GVSFSVRAGEIVGIVGESGCGKSVTSLSVMRLVPSPPGKIVGGRILFQGKDLLELPEKEM 86 GVS G I + G +G GKS +++R+ +I GG + + + Sbjct: 22 GVSLEAPRG-ITLLAGPTGGGKS----TILRVAAGLATRIYGGYLRGEVE---------- 66 Query: 87 RGIRGKDISMIFQDP---MTSLNPFLRISTQMIETIRLHQGLEAKAAREKAVEMLSLVGI 143 RGK + ++ QD + SL P + +E GL AR +AV + +GI Sbjct: 67 --ARGKPV-LVPQDYDLFILSLTP-----REELEYCYEASGLPPWEARREAVRLAEELGI 118 Query: 144 PSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVTIQAQILDLMKDLA 203 +D + S G RQRV IA AL+ ++L+ DEP D ++ L++ L Sbjct: 119 ED---LLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVESLIRLLRRLD 175 Query: 204 HRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAP 240 V++ H + + + V+++Y GR + P Sbjct: 176 VE---GVVVAEHRVHYLLPAASSVYLVYDGRAKQLGP 209 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 43.5 bits (101), Expect = 7e-06 Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 7/114 (6%) Query: 131 REKAVEMLSLVGIPSPHKRIDAYPHQFSGGMRQRVMIAMALSCNPKILIADEPTTALDVT 190 R +A+++L G+ +R P+ S G + + + MA+S P+ ++ DEPT+ LD + Sbjct: 80 RGEALKLLREAGLEYASERS---PYTLSMGEARILSVLMAISWGPEAVVIDEPTSGLDGS 136 Query: 191 IQAQILDLMKDLAHRFGTSVILITHDLGVVAGMCNRVHVMYAGRIVEEAPVDRL 244 + + L+ R G V++ HD+ A + ++ GR+ ++R+ Sbjct: 137 GKRWLASLIA----RLGVPVLVAGHDIDFAAAVAGWAVILRDGRVRVSGDMERV 186 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 345,776 Number of Sequences: 1700 Number of extensions: 15777 Number of successful extensions: 161 Number of sequences better than 1.0e-04: 38 Number of HSP's better than 0.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 48 length of query: 328 length of database: 492,079 effective HSP length: 77 effective length of query: 251 effective length of database: 361,179 effective search space: 90655929 effective search space used: 90655929 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717994|ref|YP_003873526.1| oligopeptide/dipeptide ABC transporter ATPase [Spirochaeta thermophila DSM 6192] (353 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 306 7e-85 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 264 3e-72 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 258 2e-70 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 240 4e-65 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 216 7e-58 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 213 4e-57 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 202 1e-53 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 201 2e-53 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 135 1e-33 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 132 1e-32 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 125 2e-30 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 120 7e-29 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 118 2e-28 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 111 2e-26 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 107 6e-25 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 102 1e-23 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 94 4e-21 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 94 7e-21 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 92 3e-20 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 90 7e-20 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 86 1e-18 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 83 9e-18 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 82 2e-17 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 81 3e-17 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 81 4e-17 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 77 6e-16 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 74 7e-15 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 73 9e-15 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 71 4e-14 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 66 1e-12 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 65 3e-12 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 63 1e-11 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 63 1e-11 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 63 1e-11 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 60 1e-10 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 57 9e-10 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 51 4e-08 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 44 5e-06 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 306 bits (783), Expect = 7e-85 Identities = 158/329 (48%), Positives = 214/329 (65%), Gaps = 10/329 (3%) Query: 5 ESLLTVENLKVHFPLQEGIIVKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRA 64 E L+ LK +FP++ + Y++AVD V+ + G+TLGLVGESG GK+T R Sbjct: 25 ELLVETVGLKKYFPVKSLFFTR---AYVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRV 81 Query: 65 INQLYRPTAGKVIFEGXXXXXXXXXXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLE 124 I +L PT G++ F+G R+ Q+IFQDPY SLNPR + ++IAEP++ Sbjct: 82 ILRLEEPTGGRIFFDGIDVMKLRGRGLKEFRRRAQIIFQDPYGSLNPRKTIFNLIAEPIK 141 Query: 125 IYVQRGLLSMSKKEIDERVEGLMDRVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRL 184 ++ + ++ E + L+ +VGL+ + RYPHEFSGGQRQRI IAR LAL P Sbjct: 142 VH------GIKVGDLQEYIVSLLYQVGLNETHLYRYPHEFSGGQRQRIAIARVLALKPEF 195 Query: 185 ILADEPVSALDVSIQSQILNLLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIME 244 I+ DEP SALDVS+Q+QILNLLKDLQ +Y L+YLFI+HDL V+ Y+S +AVMYLGKI+E Sbjct: 196 IVLDEPTSALDVSVQAQILNLLKDLQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVE 255 Query: 245 VARSEELYRNPLHPYTQALLSAIPIPDPQVEAKRKRIILSGDVPSPDVERKGCYFYDRCP 304 +EE++ PLHPYT+ LL +IP+PDP+V +R RI + G+ PSP GC F RCP Sbjct: 256 FGEAEEVFEKPLHPYTKVLLESIPVPDPEVAKRRSRIRIKGEPPSPINPPSGCRFRTRCP 315 Query: 305 RRMDVCRERIPRLVDREEGHQVACFLYGD 333 +D C E P L + E GH VAC+ G+ Sbjct: 316 IAVDKCLEE-PPLEEVERGHWVACWRPGE 343 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 264 bits (674), Expect = 3e-72 Identities = 152/360 (42%), Positives = 215/360 (59%), Gaps = 40/360 (11%) Query: 7 LLTVENLKVHFPLQEGI---IVKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIR 63 +L VE+L+V FPL+ I I K +++AVDGVSFS+ GE LVGESGCGK+TT + Sbjct: 19 VLRVEDLRVWFPLRRSITELITMKPQRFVKAVDGVSFSIARGEVFCLVGESGCGKTTTGK 78 Query: 64 AINQLYRPTAGKVIFE------------GXXXXXXXXXXXXAV--------RKDIQMIFQ 103 AI +L + T G+V F+ G AV R+++Q+++Q Sbjct: 79 AILRLVKATGGRVFFKPKKEVLEELERRGVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQ 138 Query: 104 DPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERVEGLMDRVGLSPL--YKNRYP 161 DPY SLNPR ++ I+ +PL I+ + +E +E V +++ V L+P + +RYP Sbjct: 139 DPYGSLNPRFTIKRILEDPLLIHSIG-----NAREREEMVARMLEAVKLTPASDFMDRYP 193 Query: 162 HEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILNLLKDLQEEYGLSYLFIA 221 H+ SGGQRQR+ IARA LNP L++ADEPVS LDVSI+++IL LL +E+ G S LFI Sbjct: 194 HQLSGGQRQRVAIARAFILNPSLVVADEPVSMLDVSIRAEILELLLGFREKLGTSLLFIT 253 Query: 222 HDLAVIEYVSHRVAVMYLGKIMEVARSEELYRNPLHPYTQALLSAIPIPDPQVEAKRKRI 281 HDLAV Y+ R+AVMYLGKI+E + + P+HPYT+AL++AIP PDP K + + Sbjct: 254 HDLAVARYICDRIAVMYLGKIVETGDARRIIERPIHPYTKALVAAIPEPDPSNRKKLREV 313 Query: 282 ILSGDVPSPDVERKGCYFYDRC---PRRMDVCRERIP-------RLVDREEGHQVACFLY 331 + G++PS GC F+ RC + MD RE P R + EE +V+C+ Y Sbjct: 314 PIKGEIPSAAAIPPGCRFHPRCVEYEQDMDRLREMCPVKEPPLKRPTEGEEDRRVSCWRY 373 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 258 bits (659), Expect = 2e-70 Identities = 146/332 (43%), Positives = 198/332 (59%), Gaps = 41/332 (12%) Query: 8 LTVENLKVHFPLQEGIIVKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQ 67 L + +++V+FP+ +KK +GY++AVDGVS SL GE LG+VGESG GK+T + I Sbjct: 4 LALHDVRVYFPITT-FYLKKVIGYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIG 62 Query: 68 LYRPTAGKVIF--------EGXXXXXXXXXXXXAVRKDI--------------------- 98 L+RP G V E R+DI Sbjct: 63 LHRPFTGHVFIDIDKGELEEAVSIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYK 122 Query: 99 ------QMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERVEGLMDRVGL 152 QM+ QDPY+SLNPRM V +II EP+ ++ + S + + RV +++ VGL Sbjct: 123 KFRRKVQMVQQDPYSSLNPRMKVGEIIGEPVRVHG----IEKSSEGVKRRVIEVLEAVGL 178 Query: 153 SPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILNLLKDLQEE 212 + +RYP+E SGGQRQR+ IARALALNP++++ DEP SALDVSIQ+QIL LL++L ++ Sbjct: 179 GKEFADRYPYELSGGQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKK 238 Query: 213 YGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEELYRNPLHPYTQALLSAIPIPDP 272 YGL+YL I HD++V+ Y+S V VMY GKIME A L+ NPLHPYT+ LLSA+PIPDP Sbjct: 239 YGLTYLLITHDISVVRYMSSSVVVMYSGKIMESAPKHILFTNPLHPYTKLLLSAVPIPDP 298 Query: 273 QVEAKRKRIILSGDVPSPDVERKGCYFYDRCP 304 + + K G+ P+P GC F RCP Sbjct: 299 R-SRRIKEFKDIGEPPNPAKPPVGCRFVTRCP 329 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 240 bits (612), Expect = 4e-65 Identities = 137/330 (41%), Positives = 197/330 (59%), Gaps = 20/330 (6%) Query: 7 LLTVENLKVHFPLQEGIIVKKTVG----YIRAVDGVSFSLGSGETLGLVGESGCGKSTTI 62 ++++ LKVH+P+ ++ K+ +G +RAVDGV + GE L +VGESGCGK+T Sbjct: 7 IVSIRGLKVHYPVYYSLL-KRILGRPDAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLG 65 Query: 63 RAINQLYRPTAGKVIFEGXXXXXXXXXXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEP 122 +AI + P+ G + + G +R+ +QM+FQDPY SL+P M V D +AEP Sbjct: 66 KAIVGIEEPSDGAIYYRGELLTPHRLARDRRLRRKLQMVFQDPYKSLDPLMPVGDQVAEP 125 Query: 123 LEIY-VQRGLLSMSKKEIDERVEGLMDRVGLSP--LYKNRYPHEFSGGQRQRIGIARALA 179 L I+ + RG +E R +++ VGL+P + R PH+ SGGQRQR+ IAR L Sbjct: 126 LVIHGLARG------EEARRRAVEMLETVGLTPGREFYWRKPHQLSGGQRQRVAIARTLV 179 Query: 180 LNPRLILADEPVSALDVSIQSQILNLLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYL 239 L P +I+ADEPVS +DVS+++ IL+L+ D G + + I HD+AV V+ R+AVMYL Sbjct: 180 LEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTGATIVLITHDIAVARAVADRIAVMYL 239 Query: 240 GKIMEVARSEELYRNPLHPYTQALLSAIPIPDPQVEAKR-KRIILSGDVPSPDVERKGCY 298 GKI+EV + NP HPYT AL+++ P + +R R +SG+VPS GC Sbjct: 240 GKIVEVGEPRSVIENPRHPYTAALVTS----TPSISRRRPPRFPISGEVPSAVAIPPGCR 295 Query: 299 FYDRCPRRMDVCRERIPRLVDREEGHQVAC 328 F+ RCP +CR R P LV+ E G AC Sbjct: 296 FHPRCPLASSLCRSREPALVE-EGGRLYAC 324 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 216 bits (550), Expect = 7e-58 Identities = 125/326 (38%), Positives = 188/326 (57%), Gaps = 23/326 (7%) Query: 6 SLLTVENLKVHFPLQEGIIVKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAI 65 ++L +++LKVH+ GI+ RAVDGVS S+ GE + +VGESG GKST +I Sbjct: 2 AVLDIQDLKVHYYTLTGIV--------RAVDGVSLSVNKGEWISIVGESGSGKSTLALSI 53 Query: 66 NQLYRP----TAGKVIFEGXXXXXXXXXXXXAVR-KDIQMIFQDPYASLNPRMVVRDIIA 120 +L P G++++ G R ++I M+FQDP A L+P V IA Sbjct: 54 PRLIMPPGRIVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIA 113 Query: 121 EPLEIYVQRGLLSMSKKEIDERVEGLMDRVGLSPLYKNRYPHEFSGGQRQRIGIARALAL 180 E L ++ GL S S E + ++ VG+ + YPH+ SGGQRQR+ IA A+AL Sbjct: 114 ESL---LEHGLAS-SGSEAESMAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVAL 169 Query: 181 NPRLILADEPVSALDVSIQSQILNLLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLG 240 P++++ADEP +ALDV +Q++I++L+K LQEE GL+ + + HD+ + S R+AVMY G Sbjct: 170 EPKILIADEPTTALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAG 229 Query: 241 KIMEVARSEELYRNPLHPYTQALLSAIPIPDPQVEAKRKRIILSGDVPSPDVERKGCYFY 300 +++E+ +E++ NP+HPYT+ L+ ++P P E K + G P GC F+ Sbjct: 230 ELVEIGPAEDVVSNPIHPYTEMLIKSVPDPWEDREVKP----IPGSPPDLRNPPPGCRFH 285 Query: 301 DRCPRRMDVCRERIP--RLVDREEGH 324 RCP R +C P R+VD GH Sbjct: 286 PRCPLRQPLCTNTRPSLRMVDGGRGH 311 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 213 bits (543), Expect = 4e-57 Identities = 137/333 (41%), Positives = 184/333 (55%), Gaps = 22/333 (6%) Query: 4 SESLLTVENLKVHFPLQEGIIVKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIR 63 ++ LL VE+LK +F GI+ +AVDGVSF+L GE LG+ GESG GKST Sbjct: 2 AQELLVVEDLKTYFYTLRGIV--------KAVDGVSFTLRRGEVLGIAGESGSGKSTLAW 53 Query: 64 AINQLYRP----TAGKVIFEGXXXXXXXXXXXXA-VR-KDIQMIFQDPYASLNPRMVVRD 117 +I L P G+++ +G VR K + M+FQ L P V Sbjct: 54 SILGLVPPPGRIVGGRIMIDGMDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGR 113 Query: 118 IIAEPLEIYVQRGLLSMSKKEIDERVEGLMDRVGLSPLYKNRYPHEFSGGQRQRIGIARA 177 I E L+I+ RG+ + E +RV L++ VGL +RYPHE SGGQ+QR+ IA A Sbjct: 114 QIEEVLQIH--RGV---GRHEARQRVYELLESVGLHRSIADRYPHELSGGQKQRVVIAMA 168 Query: 178 LALNPRLILADEPVSALDVSIQSQILNLLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVM 237 LAL P +++ADEP +ALDV +Q+QILNLLK L E LS + I HDL+VI ++ V +M Sbjct: 169 LALEPDIVIADEPTTALDVVVQAQILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIM 228 Query: 238 YLGKIMEVARSEELYRNPLHPYTQALLSAIPIPDPQVEAKRKRIILSGDVPSPDVERKGC 297 Y GKI E S+ ++ P HPYTQALL AIP ++ + + G P GC Sbjct: 229 YGGKIAEYGPSDAVFTKPQHPYTQALLKAIPKLRGPID---RLAYIPGSPPDLRNPPPGC 285 Query: 298 YFYDRCPRRMDVCRERIPRLVDREEGHQVACFL 330 F+ RCP+ D C P L +GH AC+L Sbjct: 286 RFHPRCPKAFDRCSREEPPLFRVGDGHLSACWL 318 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 202 bits (513), Expect = 1e-53 Identities = 126/341 (36%), Positives = 189/341 (55%), Gaps = 37/341 (10%) Query: 4 SESLLTVENLKVHFPLQEGIIVKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIR 63 SE +L++ +L V++ ++G++ A+DGV + GE L +VGESGCGKST R Sbjct: 2 SEIVLSIRDLTVNYYTRQGVV--------NALDGVELDVYQGEILAIVGESGCGKSTLAR 53 Query: 64 AINQLYRPTA----GKVIFE---GXXXXXXXXXXXXAVR---KDIQMIFQDPYASLNPRM 113 +I ++ A G +I G V+ K + MIFQDP A+L+P Sbjct: 54 SIARILPSNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAALSPVH 113 Query: 114 VVRDIIAEPLEIYVQRGLLSMSKKEIDERVEGLMDRVGLSP--LYKNRYPHEFSGGQRQR 171 V+ + + + S K+ +++ + ++ ++ + + +YPHE SGG +QR Sbjct: 114 KVKKQVTDHV---------SGEKRRVEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQR 164 Query: 172 IGIARALALNPRLILADEPVSALDVSIQSQILNLLKDLQEEYGLSYLFIAHDLAVIEYVS 231 I IA +L PR+I+ADEP +ALDV++Q+QIL +L L+EE + + I H+LAV ++ Sbjct: 165 IVIAASLITRPRIIIADEPTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIA 224 Query: 232 HRVAVMYLGKIMEVARSEELYRNPLHPYTQALLSAIPIP--DPQVEAKRKRIILSGDVPS 289 R+AVMY G ++EVA L+ PLHPYT+ LL +IP P D ++E R G+ PS Sbjct: 225 DRIAVMYAGHVVEVADVFSLFERPLHPYTKGLLKSIPKPHVDEEIEPIR------GEPPS 278 Query: 290 PDVERKGCYFYDRCPRRMDVCRERIPRLVDREEGHQVACFL 330 GC F+ RCP MDVC PRL +R G VAC L Sbjct: 279 LADPPPGCRFHPRCPYVMDVCMRIKPRLEERAPGRLVACHL 319 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 201 bits (512), Expect = 2e-53 Identities = 129/338 (38%), Positives = 188/338 (55%), Gaps = 29/338 (8%) Query: 5 ESLLTVENLKVHFPLQEGIIVKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRA 64 + ++ VENLKV+F GI+ +A++ VSF + GET LVGE+GCGKS T RA Sbjct: 7 DPIIEVENLKVYFYTYAGIV--------KAIEDVSFRICRGETYCLVGETGCGKSVTSRA 58 Query: 65 INQLYRPTA----GKVIF--EGXXXXXXXXXXXXAVRK----DIQMIFQDPYASLNPRMV 114 + +L P GK+ + E +R+ +I IFQDP A+L+P Sbjct: 59 LTRLIYPPGRIVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYT 118 Query: 115 VRDIIAEPLEIYVQRGLLSMSKKEIDERVEGLMDRVGLSPLYKNR---YPHEFSGGQRQR 171 + + E + + + S +E R G++ V L P + R YPHE SGG +QR Sbjct: 119 IGYQVGETMLAHGR----VRSLREGVRRAVGVLKTV-LMPDPEKRVKSYPHELSGGMKQR 173 Query: 172 IGIARALALNPRLILADEPVSALDVSIQSQILNLLKDLQEEYGLSYLFIAHDLAVIEYVS 231 I +L+ P+L++ADEP +ALDV+IQ+QI++LL L+ E+GL+ L I H+L ++ Sbjct: 174 GVIGISLSNRPKLLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYC 233 Query: 232 HRVAVMYLGKIMEVARSEELYRNPLHPYTQALLSAIPIPDPQVEAKRKRIILSGDVPSPD 291 RVAVMY G I+E A +EL+ NPLHPYT+AL+ A+P P ++E + G VP+ Sbjct: 234 DRVAVMYAGNIVEEAPVDELFSNPLHPYTRALIRAVPNPLAKIENLEH---IPGTVPNLI 290 Query: 292 VERKGCYFYDRCPRRMDVCRERIPRLVDREEGHQVACF 329 GC F+ RCP D C P L + GH+ AC+ Sbjct: 291 TPPPGCRFHPRCPLAFDRCSREKPLLKEYSPGHKAACW 328 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 135 bits (341), Expect = 1e-33 Identities = 82/246 (33%), Positives = 133/246 (54%), Gaps = 16/246 (6%) Query: 21 EGIIVKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEG 80 EGI+ K G A+ G+ + GE + L+G SGCGK+TT+R + L RP AG+V F+G Sbjct: 7 EGIV--KRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFDG 64 Query: 81 XXXXXXXXXXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEID 140 +++ M+FQ YA L P M V D IA PL+I + + EI Sbjct: 65 RDVTGLPPKD-----RNVAMVFQS-YA-LWPHMRVFDNIAFPLKIK------KLPRDEIV 111 Query: 141 ERVEGLMDRVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQS 200 RV + + + L +RYPH+ SGGQ+QR+ +ARA+ P ++L DEP+S LD ++ Sbjct: 112 RRVRWAAELLEIDHLL-DRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRI 170 Query: 201 QILNLLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEELYRNPLHPYT 260 ++ + +K LQ G++ +++ HD + R+ VM G+I +V ++Y P + + Sbjct: 171 KMRSEIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDVYHRPANTFV 230 Query: 261 QALLSA 266 + + Sbjct: 231 ATFIGS 236 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 132 bits (333), Expect = 1e-32 Identities = 84/249 (33%), Positives = 140/249 (56%), Gaps = 12/249 (4%) Query: 21 EGIIVKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEG 80 EG++ K G + AVD V S+ GE L+G SGCGK+TT+R I L P G+++ +G Sbjct: 7 EGVV--KRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILIDG 64 Query: 81 XXXXXXXXXXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEID 140 +++ M+FQ+ YA L P M V D IA ++++R + ++K +I Sbjct: 65 EDVTFKDPKD-----RNVAMVFQN-YA-LYPHMSVFDNIA--FTLHLRRKEMGLTKDDIR 115 Query: 141 ERVEGLMDRVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQS 200 RV + + + L +R P + SGGQ+QR+ +ARAL P++ L DEP+S LD ++ Sbjct: 116 RRVIEVAKLLRIEDLL-DRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRL 174 Query: 201 QILNLLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEELYRNPLHPYT 260 + LK LQ++ ++ +++ HD A ++ R+AVM G++++V EE+Y P H + Sbjct: 175 AMRAELKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEVYMRPKHTFV 234 Query: 261 QALLSAIPI 269 + A P+ Sbjct: 235 ATFIGAPPM 243 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 125 bits (313), Expect = 2e-30 Identities = 82/250 (32%), Positives = 128/250 (51%), Gaps = 14/250 (5%) Query: 25 VKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXX 84 V K G A+D VS ++ GE L+G SGCGK+TT+R I P G+V Sbjct: 9 VTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYI-----G 63 Query: 85 XXXXXXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERVE 144 ++ M+FQ+ YA L P M V D IA L+ L + + EI RV Sbjct: 64 SRDVTMLKPYERNTAMVFQN-YA-LWPHMRVFDNIAYGLK------LRKLPRSEIVRRVR 115 Query: 145 GLMDRVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILN 204 + + + L +RYPH+ SGGQ+QR+ +ARA+ P ++L DEP+S LD ++ ++ Sbjct: 116 WAAELLEIDHLL-DRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMRE 174 Query: 205 LLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEELYRNPLHPYTQALL 264 + LQ+ G++ +++ HD +SHRVAVM G++ +V E+Y P + + Sbjct: 175 EIVRLQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVYEKPATYFVATFI 234 Query: 265 SAIPIPDPQV 274 + D +V Sbjct: 235 GRSTVLDGRV 244 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 120 bits (300), Expect = 7e-29 Identities = 78/263 (29%), Positives = 143/263 (54%), Gaps = 16/263 (6%) Query: 25 VKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXX 84 V K G + AV V+ + E + ++G SG GK+T + I +Y+P+ G++ F Sbjct: 9 VWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFNDVDVT 68 Query: 85 XXXXXXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERVE 144 +++I ++FQ+ YA L P M V + IA PL L + + I E+V Sbjct: 69 DLPPN-----KRNIGLVFQN-YA-LYPHMTVYENIAFPLR------LRNFGEPAIKEKVL 115 Query: 145 GLMDRVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILN 204 + +G+ L +RYP + SGGQ+QR+ +ARAL P ++L DEP+S LD ++ +I + Sbjct: 116 SVAKLLGIEGLL-DRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRS 174 Query: 205 LLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEELYRNPLHPYTQALL 264 LK LQ+E G++ +++ HD + ++ R+A++ G I +V + ++Y P + + + + Sbjct: 175 ELKKLQKELGITAIYVTHDQSEALAMADRIAIIASGVIQQVGKPWDVYYKPRNVFVASFI 234 Query: 265 SAIP--IPDPQVEAKRKRIILSG 285 P + +++ R+ ++L G Sbjct: 235 GTPPANLVSVPLDSSRRCLLLPG 257 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 118 bits (296), Expect = 2e-28 Identities = 78/237 (32%), Positives = 123/237 (51%), Gaps = 15/237 (6%) Query: 25 VKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXX 84 V + G + A+ GVSFS ++G SGCGK+T ++ I L +P G+V F G Sbjct: 11 VHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFGGVDYT 70 Query: 85 XXXXXXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERVE 144 R+ + +FQD +L P M V D +A L RG S E+ +VE Sbjct: 71 GLPPE-----RRSVGFVFQD--LALFPHMTVYDNVAFGLRA---RGF---SGGEVRRQVE 117 Query: 145 GLMDRVGLSPL--YKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQI 202 ++ VGL+P + R SGGQ+QR+ +ARA+A P ++L DEP+S LD I+ ++ Sbjct: 118 WALETVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRL 177 Query: 203 LNLLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEELYRNPLHPY 259 L LK LQ + G + +++ HD ++ + +M G+I++ E+Y P + Y Sbjct: 178 LAELKRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEVYTRPANVY 234 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 111 bits (278), Expect = 2e-26 Identities = 74/219 (33%), Positives = 113/219 (51%), Gaps = 9/219 (4%) Query: 33 RAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXXXXXXXXXX 92 + + GV SL GE L ++G SG GKST ++AI +L P +G ++F G Sbjct: 18 KVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVFRGVDVTRLSGSQLR 77 Query: 93 AVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERVEGLMDRVGL 152 VR+ I + Q SL P M V I PLE L +S+++ +ER + +G+ Sbjct: 78 MVRRKIGYLPQS--YSLFPHMTVLRNITYPLE-----KALGLSRRDAEERAVKYLSMLGI 130 Query: 153 SPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILNLLKDLQEE 212 L +R+P SGGQ+QR +ARALA+ P ++L DEP SALD ++ +L L + Sbjct: 131 EDL-AHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEALFRV-AT 188 Query: 213 YGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEEL 251 G + + + H+ V+ R+A M G + E + EL Sbjct: 189 LGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSEL 227 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 107 bits (266), Expect = 6e-25 Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 13/234 (5%) Query: 37 GVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXXXXXXXXXXA--- 93 G+SF G ++G SG GKST IR IN+L G + EG Sbjct: 23 GISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARV-EGEVWINNMNVMKEDPYN 81 Query: 94 VRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERVEGLMDRVGLS 153 +R+ M+FQ+P P M + + +A +++ L+ +KKE+DE VE + L Sbjct: 82 IRRYTGMVFQEPNPF--PHMTIYENVAIGPKLHG----LAKNKKELDEIVEWALKMAHLW 135 Query: 154 PLYKNR---YPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILNLLKDLQ 210 K+R YPH+ SGGQRQR+ +ARALAL PR++L DEP + +D +I + + Sbjct: 136 DEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYA 195 Query: 211 EEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEELYRNPLHPYTQALL 264 +E + + + H +S ++ +Y G+++E ++EL P H T+ L Sbjct: 196 KEEMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELVLRPRHELTKKFL 249 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 102 bits (254), Expect = 1e-23 Identities = 69/225 (30%), Positives = 112/225 (49%), Gaps = 14/225 (6%) Query: 27 KTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXXXX 86 K G RAVDGVSF + GE L+G +G GK+TTI+ ++ L RPT+G+ G Sbjct: 14 KDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWIAGYSIVRE 73 Query: 87 XXXXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERVEGL 146 VR+ I ++ QD + D ++ +Y+Q L + E ER + Sbjct: 74 PGN----VRRVIGLVPQD--------LTADDEMSGWDNVYIQARLYGLPSSEARERTREV 121 Query: 147 MDRVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILNLL 206 +D + L R +SGG R+++ IA +L +P+++ DEP LDV + + + Sbjct: 122 LDYLDLMEAAHRRVA-TYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYI 180 Query: 207 KDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEEL 251 +DL+ ++ L H + E +S RVA++ G+I+ EEL Sbjct: 181 EDLKRS-AVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEEL 224 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 94.4 bits (233), Expect = 4e-21 Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 14/215 (6%) Query: 32 IRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXXXXXXXXX 91 I A+ VS S+ GE L ++G SG GK+T + I + RP AG+VI +G Sbjct: 27 IVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGEEL 86 Query: 92 XAVRKD-IQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERVEGLMDRV 150 R + + +FQ +L P + + I P+ + + L R + L+ RV Sbjct: 87 RRFRLERVGYVFQQH--NLIPTLTALENILLPMALAGKANRL---------RGQELLRRV 135 Query: 151 GLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILNLLKDLQ 210 GL + RYP E SGG++QR+ +A ALA +P +I+ADEP LD++ +I+ +L + Sbjct: 136 GLGGK-ERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEA 194 Query: 211 EEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEV 245 G + + HD V ++ RVAV+ G++ V Sbjct: 195 HSRGKTVVLTTHDPRVAR-MADRVAVIEDGRLRGV 228 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 93.6 bits (231), Expect = 7e-21 Identities = 62/236 (26%), Positives = 110/236 (46%), Gaps = 5/236 (2%) Query: 25 VKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXX 84 ++K G I A+D V+ + G+ L+G +G GK+T + I+ Y+P G+V+F+G Sbjct: 12 LEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLFKGRDIT 71 Query: 85 XXXXXXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMS----KKEID 140 + P+ +L V P E GL +K Sbjct: 72 GMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWLGFEKRAA 131 Query: 141 ERVEGLMDRVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQS 200 R ++ VGL ++ R E SGGQ + + IARA+ +I+ DEP + ++ + Sbjct: 132 ARAFEILGWVGLDHMWDRR-SGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVNPRLAG 190 Query: 201 QILNLLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEELYRNPL 256 I+ +K L E G+++L I H + +++ RV M +GK++ + +E+ NP+ Sbjct: 191 SIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEVLNNPV 246 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 91.7 bits (226), Expect = 3e-20 Identities = 72/261 (27%), Positives = 128/261 (49%), Gaps = 14/261 (5%) Query: 24 IVKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXX 83 IVK ++A+D V F+L +GE L+GE+G GK+T +R + +PT G++ G Sbjct: 18 IVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYVWG--R 75 Query: 84 XXXXXXXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERV 143 A+R I M++Q R+V + E + IY+ L + + E R Sbjct: 76 KVSWRGPWDAIRNGIAMVYQ------QFRLVESMTVEENIAIYLSS--LGLGRSEARRRT 127 Query: 144 EGLMDRVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQIL 203 +R+GL + + + G RQR+ I +AL+ ++++ DEP S L ++ Sbjct: 128 LETAERLGLE-IDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLF 186 Query: 204 NLLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEELYRNPLHPYTQAL 263 + L+ L ++ G+S ++I H L + V+ RV V+ G++ V E++ R + + Sbjct: 187 STLR-LLKDMGVSVVYITHKLGEVVRVADRVTVLRRGRVSAVI--EDVGRTSEEELARLM 243 Query: 264 LSAIPIPDPQVEAKRKRIILS 284 + +P P P+ K R +LS Sbjct: 244 VGTLPPPTPRPPGKVGRELLS 264 Score = 55.1 bits (131), Expect = 3e-09 Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 13/224 (5%) Query: 25 VKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXX 84 V V + V VS + GE +G+ G +G G+ + AI L RP G + +G Sbjct: 268 VSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEVQGRRIE 327 Query: 85 XXXXXXXXAVRKDIQMIFQDPYASLNPRMVVRDI-IAEPLEI--YVQRGLLSMSKKEIDE 141 D A +++ D +AE + Y L + + +++ Sbjct: 328 GSL---------DFYRAGGGYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRRSRLED 378 Query: 142 RVEGLMDRVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQ 201 L++R L SGG +Q++ + + +L++A P LD++ S Sbjct: 379 LFRRLVERFRLVARSPWTPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTSF 438 Query: 202 ILNLLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEV 245 + NLL +L + G L ++ DL I +S R+ VM G++ V Sbjct: 439 VRNLLSELARQ-GAGILLVSTDLDEILELSDRIYVMSGGRVTGV 481 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 90.1 bits (222), Expect = 7e-20 Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 14/227 (6%) Query: 25 VKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXX 84 ++K G AV GVSFS+G GE ++G +G GK+T +R ++ + RP+ G V G Sbjct: 10 LRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVCGYDVW 69 Query: 85 XXXXXXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERVE 144 + +A +P M R AE I V GLL +S Sbjct: 70 GDGWREARGL---------IGFAPQDPPMARRMTGAE--YITVVGGLLGLSPGVARREAR 118 Query: 145 GLMDRVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILN 204 +++ +G + R SGGQR+ +GIA ALA NP +++ DEP S LDV + + Sbjct: 119 RVLEMLGFEDVL-GRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWA 177 Query: 205 LLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEEL 251 L+ + G + LF +HD E S RV +M+ G++ + EL Sbjct: 178 SLRKAFK--GRTVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPREL 222 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 86.3 bits (212), Expect = 1e-18 Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 19/230 (8%) Query: 24 IVKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXX 83 +VKK G +D V +G GE +GLVG +G GK+T I+ L R G+V+ G Sbjct: 10 VVKKYRGQ-PVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLLNGLDP 68 Query: 84 XXXXXXXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERV 143 R+ + ++F+ P +L M V + + I + S +D + Sbjct: 69 WREPRA-----REGVGVVFERP--NLPSSMPVVEFLESAAAI------IGSSPSRVDWAI 115 Query: 144 EGLMDRVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQIL 203 GL +P + S G +QR IA AL PR ++ADEP S LD + ++L Sbjct: 116 RA----AGLEGHEWKTFP-QLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVL 170 Query: 204 NLLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEELYR 253 LL L E+GLS L +H + + V+ R+ V+ G++ E+L+R Sbjct: 171 RLLARLNREHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDLFR 220 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 83.2 bits (204), Expect = 9e-18 Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 18/225 (8%) Query: 30 GYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXXXXXXX 89 G + A+D VS + GE LG++G +G GK++ + I +Y+P G+V F+G Sbjct: 12 GGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDITGLKPH 71 Query: 90 XXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMS---------KKEID 140 + + FQ ++ L M V + I L + + +L + + E Sbjct: 72 QRITL--GLSRTFQ--HSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWEVEAR 127 Query: 141 ERVEGLMDRVGLSPLYKNRYPH--EFSGGQRQRIGIARALALNPRLILADEPVSALDVSI 198 ER E ++D L L+++R+ G ++++ +A ALA NP ++L DEP++ L Sbjct: 128 ERAEHVID---LLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEE 184 Query: 199 QSQILNLLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIM 243 + I+ + + E + + I HD+ V+ V RV VM GK++ Sbjct: 185 KEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVI 229 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 82.0 bits (201), Expect = 2e-17 Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 19/226 (8%) Query: 32 IRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXXXXXXXXX 91 + A+ GVSFS+ GE +G +G GK+TT+R ++ L P G E Sbjct: 25 VEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGG----EARVAGFDVVKER 80 Query: 92 XAVRKDIQMIF---QDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERVEGLMD 148 VRK I ++ + Y L R +Y + + + E+ R++ ++D Sbjct: 81 WEVRKRIGVMLSVERGFYWKLTGRE----------NLYYFGRIYGIPQGELKSRIKEVLD 130 Query: 149 RVGLSPLYKNRYP-HEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILNLLK 207 VGL+ L P E S G + R+G+AR L +P +++ DEP LD + I +++ Sbjct: 131 LVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIR 190 Query: 208 DLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEELYR 253 L E G + H++ E +S RV ++ G+I +EL R Sbjct: 191 SLASE-GRTIFITTHNMVEAEMISDRVGIIIGGRIAMEGTPDELKR 235 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 81.3 bits (199), Expect = 3e-17 Identities = 67/256 (26%), Positives = 122/256 (47%), Gaps = 31/256 (12%) Query: 4 SESLLTVENLKVHFPLQEGIIVKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIR 63 +E LL V+++ V++ G +A+ GVS + GE + L+G +G GK+TT+ Sbjct: 3 AEPLLEVKSIDVYY------------GEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLL 50 Query: 64 AINQLYRPTAGKVIFEGXXXXXXXXXXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPL 123 I+ L +P G +I++G V + I + + + PR+ V + + Sbjct: 51 TISGLLKPRNGSIIWQG--RDITGLPAFKRVEEGISHVPEG--RGIFPRLTVYENLR--- 103 Query: 124 EIYVQRGLLSMSKKEIDERVEGLMDRV-GLSPLYKNRYPH---EFSGGQRQRIGIARALA 179 ++ S + E + +++V + P+ K R SGG++Q + IARAL Sbjct: 104 --------VAASTRRAKEHFQDSLEQVYTIFPILKARRSQLAGTLSGGEQQMLAIARALI 155 Query: 180 LNPRLILADEPVSALDVSIQSQILNLLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYL 239 P L++ DEP L + ++ L L+EE G++ L + ++ + V+ R VM Sbjct: 156 QRPILLMMDEPSLGLAPKLARDVIYLASRLREELGVTILLVEQNVGLSLKVADRGYVMET 215 Query: 240 GKIMEVARSEELYRNP 255 G+I+ S+EL +P Sbjct: 216 GRIVLEGASDELALDP 231 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 80.9 bits (198), Expect = 4e-17 Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 16/234 (6%) Query: 25 VKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXX 84 V K G I A+ GVSFS+ GE +GL+G +G GK+T I+ +Y P G+VI++G Sbjct: 10 VYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYKGVDIT 69 Query: 85 X--XXXXXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDER 142 + + Q++ P A+L V+ ++I L L + +E ER Sbjct: 70 GWPAYRRSRAGIARTFQIV--RPLANLT---VLNNVIVGAL-------LRTNDIREARER 117 Query: 143 VEGLMDRVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQI 202 +D VGL+ ++ + + +++R+ +ARALA P L+L DE + L + Sbjct: 118 AMEAIDMVGLAG-KEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDL 176 Query: 203 LNLLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEELYRNPL 256 + L ++ + G++ + + H + + + RV V++ G+ + E+ N L Sbjct: 177 VYTLLEISKR-GITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVASNKL 229 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 77.0 bits (188), Expect = 6e-16 Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 13/220 (5%) Query: 32 IRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXXXXXXXXX 91 IRA+DGV +G G L+G +G GK+T ++ ++ L P +G G Sbjct: 26 IRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANN-- 83 Query: 92 XAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERVEGLMDRVG 151 VR I ++ A L R+ D ++ L + +E RV+ L++ VG Sbjct: 84 --VRSRIGVVLGGERA-LYWRLSGWD------NLWFFSQLYGIPPREAKRRVKELLEIVG 134 Query: 152 LSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILNLLKDLQE 211 L R + +S G +QR+ IAR L +P ++L DEP LD ++ ++++ + Sbjct: 135 LEEWAHVRVEN-YSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVR 193 Query: 212 EYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEEL 251 E G + L H + E +S RVA++ G+I+ E+L Sbjct: 194 E-GRTVLLTTHYMVEAEELSDRVAIISKGRIVAEGPPEDL 232 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 73.6 bits (179), Expect = 7e-15 Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 27/232 (11%) Query: 18 PLQEGIIVKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVI 77 P E V K +G + VS ++ G G+VG +G GK+T R + LYR G+V Sbjct: 7 PAVEAEGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVA 66 Query: 78 FEGXXXXXXXXXXXXAVRKDIQMIFQD--PYASLNPRMVVRDIIA----EPLEIYVQRGL 131 G ++ + + + +D PY ++ +R + E LE Y++ Sbjct: 67 LLGEPVERAGG----SLFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLEGYLEEA- 121 Query: 132 LSMSKKEIDERVEGLMDRVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPV 191 R+ GL R+G +S G R+R+ +A LAL P L + DEP Sbjct: 122 ---------SRLSGLGGRLG-------ERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPT 165 Query: 192 SALDVSIQSQILNLLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIM 243 + LD I LLK+ E +G++ L +H++ +E V + ++ G+I+ Sbjct: 166 AGLDPVYSVGIRRLLKEYSERHGVTVLLSSHNMYEVESVCSEITMISSGRIV 217 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 73.2 bits (178), Expect = 9e-15 Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 26/236 (11%) Query: 21 EGIIVKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEG 80 EG++ K G + A+ GVSFS+ SGE G +G +G GK+TTIR + RPT+G G Sbjct: 8 EGLV--KRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARVFG 65 Query: 81 XXXXXXXXXXXXAVRKDIQMI---FQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKK 137 VR+ + + F+ RM+ Y R + S+ Sbjct: 66 ---VELYNPGASGVRRRVGYVPGEFEFYGGVSGGRML----------DYWCRLVGGCSRG 112 Query: 138 EIDERVEGLMDRVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVS 197 + E +E PL R +S G +Q + + A + P L++ DEP + LD Sbjct: 113 VVRELLEAF-------PLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPL 165 Query: 198 IQSQILNLLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEELYR 253 + ++L+ ++ E G++ F +H L+ ++ V+ RV ++ G ++ + L R Sbjct: 166 ARGRVLDFVRSKARE-GVTVFFSSHVLSEVQRVADRVGLLRSGVLVALEDVSSLLR 220 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 71.2 bits (173), Expect = 4e-14 Identities = 64/238 (26%), Positives = 114/238 (47%), Gaps = 23/238 (9%) Query: 8 LTVENLKVHFPLQEGIIVKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQ 67 L VE+L V +P G + A+ GV+ S +G L+GE+G GK+T ++AI Sbjct: 5 LAVEDLDVVYP-----------GGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMG 53 Query: 68 LYRPTAGKVIFEGXXXXXXXXXXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYV 127 + +P G+++ +G ++R I M Q+P + P + + +A L + Sbjct: 54 VVKPRKGRILVDG--YELRPKGPGDSLRSGIYMASQNP--PVYPGIKAYEDLAVTLMVAG 109 Query: 128 QRGLLSMSKKEIDERVEGLMDRVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILA 187 ++ L ++ + E E L GL+ + +RY E +RQR+ + +ALAL R +L Sbjct: 110 RKAGLRQARTMLAEASEAL----GLN-IDPDRYLGEMGFSERQRLEVIKALALGSRAVLL 164 Query: 188 DEPVSALDVSIQSQILNLLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEV 245 DEP + L +++L L G + L + H + E + H ++ L K ++V Sbjct: 165 DEPTTHLTPEEAARMLEAAGRLAAS-GAAVLLVTHRIG--EAMEHADRLVILRKGVKV 219 Score = 59.3 bits (142), Expect = 1e-10 Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 9/194 (4%) Query: 45 GETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXXXXXXXXXXAVRKDIQMIFQD 104 GE +G+ G +G G+ I L +P G+++ G R + +I Sbjct: 280 GEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARR--RLGLGVI--- 334 Query: 105 PYASLNPRMVVRDIIAE--PLEIYVQRGLLSMSKKEIDERVEGLMDRVGLSPLYKNRYPH 162 P L +V + IA L I+ R + + ++ E ++ +G+ + + Sbjct: 335 PEERLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGIKAVSPRQMVD 394 Query: 163 EFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILNLLKDLQEEYGLSYLFIAH 222 E SGG QR+ +AR L L PRL++A P + LD+ Q + +++ E G+ L I Sbjct: 395 ELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRMSSERGGV--LVIDE 452 Query: 223 DLAVIEYVSHRVAV 236 DL + VS+++ V Sbjct: 453 DLDFLLRVSNKIYV 466 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 66.2 bits (160), Expect = 1e-12 Identities = 59/216 (27%), Positives = 102/216 (47%), Gaps = 13/216 (6%) Query: 25 VKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXX 84 V K+V + GVS S+ GE L G +G GK+T++R + L +G+ G Sbjct: 20 VAKSVKGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPW 79 Query: 85 XXXXXXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERVE 144 V+ ++ + +D AS+ R+ + I +Y ++++E VE Sbjct: 80 GGGFER---VKGEVGYLPED--ASVYERLTGMENILFYARLY-------SGWRDVEELVE 127 Query: 145 GLMDRVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILN 204 + GLS R +S G ++R+ + L PRL++ DEP S +D ++I Sbjct: 128 NAVFYSGLSREDLARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKK 187 Query: 205 LLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLG 240 +L+ L E G + L HDLA+ E ++ RV +++ G Sbjct: 188 ILRGLSRE-GRAILVTTHDLALAEEIADRVTIIHGG 222 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 64.7 bits (156), Expect = 3e-12 Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 33/208 (15%) Query: 45 GETLGLVGESGCGKSTTIRAINQLYRPTAGKV---------IFEGXXXXXXXXXXXXAVR 95 G+ +GL+G +G GK+T +R + +P G+V I + V Sbjct: 106 GQVVGLLGRNGTGKTTALRILAGELKPNLGRVEGGEPEWDEILKRFRGSELQTYFRKLVD 165 Query: 96 KDIQMIFQDPYASLNPRMV---VRDIIAEPLEIYVQRGLLSMSKKEIDER--VEGLMDRV 150 +++ + Y L PR + VRD++ K DER L ++V Sbjct: 166 GKLRVAHKIQYVELVPRRLKGRVRDLL-----------------KRADERGVALELAEQV 208 Query: 151 GLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILNLLKDLQ 210 GL ++ +R + SGG+ Q++ I L+ + + + DEP S LD+ + ++ L+ Sbjct: 209 GLDKVF-DRDVRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAA 267 Query: 211 EEYGLSYLFIAHDLAVIEYVSHRVAVMY 238 G + + HDLAV++YVS V ++Y Sbjct: 268 RP-GAYVMVVEHDLAVLDYVSDLVHILY 294 Score = 63.9 bits (154), Expect = 6e-12 Identities = 52/209 (24%), Positives = 96/209 (45%), Gaps = 28/209 (13%) Query: 34 AVDGVSFSLGSG-----ETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXXXXXX 88 A+DG + + G G E +G+ G +G GK+T +R + +P G V Sbjct: 367 ALDGFTLTSGEGALYGGEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVY----------- 415 Query: 89 XXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERVEGLMD 148 +D+++ ++ Y S P + + + L+ L S ++ L+ Sbjct: 416 ----PYVEDLRVSYKPQYIS--PESLPDATVEQVLKAANPAILAPGSWLNLE-----LVK 464 Query: 149 RVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILNLLKD 208 R+ L L + R SGG+ Q++ +A ALA + L DEP + LDV + + ++ Sbjct: 465 RMRLDKLLERRV-RTLSGGELQKVAVAAALAREADVYLLDEPSAYLDVEERVGVARAIRR 523 Query: 209 LQEEYGLSYLFIAHDLAVIEYVSHRVAVM 237 + E + L + HDL +++YVS R+ ++ Sbjct: 524 IVETREAAALVVEHDLMILDYVSDRIMLV 552 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 63.2 bits (152), Expect = 1e-11 Identities = 62/235 (26%), Positives = 98/235 (41%), Gaps = 37/235 (15%) Query: 31 YIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXXXXXXXX 90 +I + +S S+ G L+G +G GK+T ++A++ + + G+V Sbjct: 17 FILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRV-------------- 62 Query: 91 XXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERVEGLMDRV 150 R IQ+ +D + P D IA IYV G + +E + + Sbjct: 63 ---TRGSIQLEGED-ITNREP-----DEIARRGVIYVMEGRRIFKELTTEENLVSVAYAA 113 Query: 151 GLS-----------PLYKNRYPHE---FSGGQRQRIGIARALALNPRLILADEPVSALDV 196 G S P K R + SGG++Q + IA AL P+L++ DEP L Sbjct: 114 GASRDDIRSVLSYFPRLKERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAP 173 Query: 197 SIQSQILNLLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEEL 251 I SQI +K L E GL+ L + +S V+ G+I+ +EEL Sbjct: 174 KITSQIYATIKMLHREEGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEEL 228 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 63.2 bits (152), Expect = 1e-11 Identities = 54/221 (24%), Positives = 107/221 (48%), Gaps = 19/221 (8%) Query: 35 VDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXXXXXXXXXXAV 94 + GV+ + ++G +G GK+T ++AI L +P G+V +G V Sbjct: 18 LSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLDGFEATGRPEM----V 73 Query: 95 RKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDE-RVEGLMDRVGLS 153 + + Q+P A M VR+ + L + RG+ ++ ++ G+ V S Sbjct: 74 GRYAGYVPQNPSAPKLSPMTVREFVETSLRL---RGVTRARERAVEVLHTLGIRGEVLES 130 Query: 154 PLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILNLLKDLQEEY 213 L+ E S G QR+ IARA+A +P++++ DEP++++D + + +I ++ L E Sbjct: 131 RLW------ELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAGLARE- 183 Query: 214 GLSYLFIAHDLAVIEYVSHRVAVMYLGK-IMEVARSEELYR 253 L +HD +++ + H ++ + + ++ EE+YR Sbjct: 184 -RLVLMTSHDPSLL--LGHTDIIVVINRDLIASGPPEEVYR 221 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 62.8 bits (151), Expect = 1e-11 Identities = 60/231 (25%), Positives = 106/231 (45%), Gaps = 13/231 (5%) Query: 29 VGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAI--NQLYRPTAGKVIFEGXXXXXX 86 +G ++ V F L GE ++G +G GKS+ I ++Y G ++ +G Sbjct: 12 IGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDILLDGESIKEL 71 Query: 87 XXXXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERVEGL 146 K I M QDP R+ IIA + + L + +I +R+ Sbjct: 72 PPEERAL--KGIFMAQQDPPQIPGVRLSSL-IIAFVNKRLGAQDLSKPADPKIVKRMYEY 128 Query: 147 MDRVGLSPLYKNRYPHE-FSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILNL 205 ++GL NR + FSGG+++R + +A+ +P++++ DEP S LD+ + Sbjct: 129 ATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGLKIVAEF 188 Query: 206 LKDLQEEYGLSYLFIAHDLAVIEYVS-HRVAVMYLGKIM-----EVARSEE 250 +K L++ G + I H ++ +V RV V+Y G ++ E+AR E Sbjct: 189 IKQLRDS-GRGVMLITHYARLLNFVEPDRVTVLYRGSVLARGGAELARQVE 238 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 59.7 bits (143), Expect = 1e-10 Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 20/184 (10%) Query: 37 GVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXXXXXXXXXXAVRK 96 GVSFSL G + L+G +G GK+T +R + + +P+ G+V G VR+ Sbjct: 24 GVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEVCG--------SPPGRVRR 75 Query: 97 DIQMIFQDPYASLNPRMVVRDIIAEPLEIY---VQRGLLSMSKKEIDERVEGLMDRVGLS 153 + YA +P + R E +Y V G ++ +++ +E V + +G+ Sbjct: 76 ML------GYAPASPEVDPRLKAVEVALLYRYGVSEG-VAWGRRDWEE-VLAALGEMGVG 127 Query: 154 PLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILNLLKDLQEEY 213 L R+ E S GQR+ + +A LA P L L DEP S LDVS ++ +L+ L+ Sbjct: 128 ELAWRRW-GELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRSLRGRA 186 Query: 214 GLSY 217 + Y Sbjct: 187 TIVY 190 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 56.6 bits (135), Expect = 9e-10 Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 14/213 (6%) Query: 25 VKKTVGYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXX 84 + K G A V F+ SG LG++G +G GK+T ++ I L +P+AG+++ EG Sbjct: 10 LSKRFGQRYAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVEG---- 64 Query: 85 XXXXXXXXAVRKDIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERVE 144 K + I P + P I+ E L L + E R Sbjct: 65 --VNPRSPGFEKLLPRIGYVPELPVVPLWTTPCILLETL-----ARLEGYTSVEARVRAR 117 Query: 145 GLMDRVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILN 204 ++ VGL+ + + S G R+R+ +A+A L++ DEP S LD ++ Sbjct: 118 EALEVVGLAGECETPI-GKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRE 176 Query: 205 LLKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVM 237 LL+ + E G + + +H L +E ++ V V+ Sbjct: 177 LLRTVARE-GATVIVSSHILRELEDIATHVLVL 208 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 51.2 bits (121), Expect = 4e-08 Identities = 47/226 (20%), Positives = 98/226 (43%), Gaps = 21/226 (9%) Query: 30 GYIRAVDGVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXXXXXXX 89 G ++ + VS + G +VG +G GKST ++ + G+V+FE Sbjct: 16 GKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLFENTDVTHMPPH 75 Query: 90 XXXAVRK----DIQMIFQDPYASLNPRMVVRDIIAEPLEIYVQRGLLSMSKKEIDERVEG 145 + ++ IF++ N R+ D+ P +++ R +E+ Sbjct: 76 DRAKIGMTFIFQLENIFRELTVYENLRLAGYDL---PEDVFRDR------LEEVFSMFPR 126 Query: 146 LMDRVGLSPLYKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILNL 205 L +R+G + SGG+RQ + +A + P++ L DEP + L + ++L+ Sbjct: 127 LKERLG-------QKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSY 179 Query: 206 LKDLQEEYGLSYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSEEL 251 ++ L +E G + + + ++ + + ++ G+I +EEL Sbjct: 180 VRILNKE-GYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDGPAEEL 224 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 44.3 bits (103), Expect = 5e-06 Identities = 58/214 (27%), Positives = 86/214 (40%), Gaps = 25/214 (11%) Query: 37 GVSFSLGSGETLGLVGESGCGKSTTIRAINQLYRPTAGKVIFEGXXXXXXXXXXXXAVRK 96 GVS G TL L G +G GKST +R L G + V + Sbjct: 22 GVSLEAPRGITL-LAGPTGGGKSTILRVAAGLATRIYGGYL----RGEVEARGKPVLVPQ 76 Query: 97 DIQMIFQDPYASLNPRMVVRDIIAEPLEI-YVQRGLLSMSKKEIDERVEGLMDRVGLSPL 155 D + SL PR E LE Y GL + R L + +G+ L Sbjct: 77 DYDLFI----LSLTPR--------EELEYCYEASGLPPWEARREAVR---LAEELGIEDL 121 Query: 156 YKNRYPHEFSGGQRQRIGIARALALNPRLILADEPVSALDVSIQSQILNLLKDLQEEYGL 215 R + S G+RQR+ IA ALAL ++L DEP++ D ++ LL+ L E Sbjct: 122 LDRRVS-KLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVESLIRLLRRLDVE--- 177 Query: 216 SYLFIAHDLAVIEYVSHRVAVMYLGKIMEVARSE 249 + H + + + V ++Y G+ ++ E Sbjct: 178 GVVVAEHRVHYLLPAASSVYLVYDGRAKQLGPGE 211 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 362,461 Number of Sequences: 1700 Number of extensions: 16471 Number of successful extensions: 176 Number of sequences better than 1.0e-04: 38 Number of HSP's better than 0.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 76 Number of HSP's gapped (non-prelim): 49 length of query: 353 length of database: 492,079 effective HSP length: 78 effective length of query: 275 effective length of database: 359,479 effective search space: 98856725 effective search space used: 98856725 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717995|ref|YP_003873527.1| hypothetical protein STHERM_c02810 [Spirochaeta thermophila DSM 6192] (170 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.140 0.475 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 154,781 Number of Sequences: 1700 Number of extensions: 5326 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 170 length of database: 492,079 effective HSP length: 71 effective length of query: 99 effective length of database: 371,379 effective search space: 36766521 effective search space used: 36766521 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717996|ref|YP_003873528.1| hydrolase, haloacid dehalogenase-like family [Spirochaeta thermophila DSM 6192] (224 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 227,383 Number of Sequences: 1700 Number of extensions: 9543 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 0 length of query: 224 length of database: 492,079 effective HSP length: 74 effective length of query: 150 effective length of database: 366,279 effective search space: 54941850 effective search space used: 54941850 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717997|ref|YP_003873529.1| glutamine synthetase [Spirochaeta thermophila DSM 6192] (474 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431747|ref|NP_148412.2| glutamine synthetase [Aeropyrum pe... 281 2e-77 >gi|118431747|ref|NP_148412.2| glutamine synthetase [Aeropyrum pernix K1] Length = 458 Score = 281 bits (719), Expect = 2e-77 Identities = 181/454 (39%), Positives = 256/454 (56%), Gaps = 22/454 (4%) Query: 26 FMDFPGLWQHFSIPARELSEKTFEEGLGFDGSSIRGWQAINESDMLVIPVLESAFLDPFT 85 + D G + +P R + EK F FDGSS+ G+ + +SD+L+ V E+ P+ Sbjct: 22 YTDIAGYLRQVEVPLRNV-EKEFVAS--FDGSSVYGFTPVEDSDLLLKHVPETLVSVPWR 78 Query: 86 QHKTLVLICNIHDPVTHEAYTKDPRNIARKAEAYLKSSGIGTTAYFGPEAEFFVFDDIRF 145 V I +++ T E +DPR A AE + S G A G E EFF+FD I Sbjct: 79 SGLWRV-IATVYN-ATRERSPRDPRLAAETAEKIMSSMGYRVKA--GAEIEFFIFDKIGV 134 Query: 146 DQTVNA-GYYYIDSMEGRWNSGREENPNLGYKPRYKEGYFPVPPTDSLQDLRSEMTLILE 204 D A G YI +E R G ++ G + K+ Y P DSL D R +T L+ Sbjct: 135 DVLNPARGLGYI--VESREQPGGQD----GIFGQVKKSYHMPEPPDSLLDYRLMLTETLQ 188 Query: 205 SIGVPIEAQHHEVATGGQCEIDMRF-DSLVTMADKLLKYKYAIKNTARKYNKTVTFMPKP 263 V + HHEVA Q E+ + SL + D ++ K+ K AR + TFMPKP Sbjct: 189 RFKVDVAVSHHEVAVS-QVEVSIGSRTSLARLGDDIMTVKWVSKVLARMDGRVATFMPKP 247 Query: 264 LFGDNGSGMHVHVSIWKDD-KNLFAGNGYAGLSETALYAIGGILKHAPAILAFTNPTTNS 322 +FGDNGSGMH+H+S+W +NLFAG+G + LSETAL+ I GIL+HA ++ A +PTTNS Sbjct: 248 IFGDNGSGMHIHLSLWSPGGENLFAGHGDSDLSETALHFIAGILEHARSLSAILSPTTNS 307 Query: 323 YKRLVPGFEAPVNLAYSSRNRSAAVRIPMYSDSPKAKRIEFRCPDPSCNPYLAFSAILMA 382 Y+RLV G+EAPV +A+ RNRSA +RIP + + A RIE R PDP+ NPYLA +A+ MA Sbjct: 308 YRRLVAGYEAPVYVAWGWRNRSAMIRIPASAGNIDAVRIEVRSPDPTANPYLALAALFMA 367 Query: 383 AIDGIQNKIDPGQPLDKNIYDLPPEEAAQ--VPQTPGSLREALKALEEDHDFLLKGDVFT 440 +DG++ K+ P P + N+Y + PEE + + P +L EAL LE D+D+L FT Sbjct: 368 GLDGVKKKLAPPDPYEGNLYKISPEELREKGIKTLPRNLDEALDELESDNDYL--KPAFT 425 Query: 441 EDVIETWISYKMQNEVLAVETRPHPWEFALYYDI 474 +++E++I K + E PHP E Y ++ Sbjct: 426 REMLESYIEVK-RKESEDTRLYPHPIEVYKYLNL 458 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 498,173 Number of Sequences: 1700 Number of extensions: 22341 Number of successful extensions: 75 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 1 length of query: 474 length of database: 492,079 effective HSP length: 80 effective length of query: 394 effective length of database: 356,079 effective search space: 140295126 effective search space used: 140295126 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717998|ref|YP_003873530.1| ABC transporter permease [Spirochaeta thermophila DSM 6192] (330 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 353,164 Number of Sequences: 1700 Number of extensions: 15967 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 330 length of database: 492,079 effective HSP length: 77 effective length of query: 253 effective length of database: 361,179 effective search space: 91378287 effective search space used: 91378287 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307717999|ref|YP_003873531.1| peptidase T [Spirochaeta thermophila DSM 6192] (428 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.137 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 465,792 Number of Sequences: 1700 Number of extensions: 21981 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 0 length of query: 428 length of database: 492,079 effective HSP length: 79 effective length of query: 349 effective length of database: 357,779 effective search space: 124864871 effective search space used: 124864871 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718000|ref|YP_003873532.1| hypothetical protein STHERM_c02860 [Spirochaeta thermophila DSM 6192] (443 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 495,554 Number of Sequences: 1700 Number of extensions: 24818 Number of successful extensions: 48 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48 Number of HSP's gapped (non-prelim): 0 length of query: 443 length of database: 492,079 effective HSP length: 80 effective length of query: 363 effective length of database: 356,079 effective search space: 129256677 effective search space used: 129256677 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718001|ref|YP_003873533.1| hypothetical protein STHERM_c02870 [Spirochaeta thermophila DSM 6192] (449 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 447,602 Number of Sequences: 1700 Number of extensions: 20436 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 449 length of database: 492,079 effective HSP length: 80 effective length of query: 369 effective length of database: 356,079 effective search space: 131393151 effective search space used: 131393151 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718002|ref|YP_003873534.1| hypothetical protein STHERM_c02880 [Spirochaeta thermophila DSM 6192] (433 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.133 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 414,044 Number of Sequences: 1700 Number of extensions: 17367 Number of successful extensions: 72 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72 Number of HSP's gapped (non-prelim): 0 length of query: 433 length of database: 492,079 effective HSP length: 79 effective length of query: 354 effective length of database: 357,779 effective search space: 126653766 effective search space used: 126653766 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718003|ref|YP_003873535.1| hypothetical protein STHERM_c02890 [Spirochaeta thermophila DSM 6192] (225 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 182,756 Number of Sequences: 1700 Number of extensions: 7497 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 225 length of database: 492,079 effective HSP length: 74 effective length of query: 151 effective length of database: 366,279 effective search space: 55308129 effective search space used: 55308129 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718004|ref|YP_003873536.1| hypothetical protein STHERM_c02900 [Spirochaeta thermophila DSM 6192] (486 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 389,159 Number of Sequences: 1700 Number of extensions: 14120 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 486 length of database: 492,079 effective HSP length: 80 effective length of query: 406 effective length of database: 356,079 effective search space: 144568074 effective search space used: 144568074 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718005|ref|YP_003873537.1| tRNA modification GTPase [Spirochaeta thermophila DSM 6192] (449 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601780|ref|NP_148321.1| GTP-binding protein HflX [Aeropyrum... 58 5e-10 >gi|14601780|ref|NP_148321.1| GTP-binding protein HflX [Aeropyrum pernix K1] Length = 372 Score = 57.8 bits (138), Expect = 5e-10 Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 25/173 (14%) Query: 221 RVVLAGRTNAGKSSLFNLFMREDRAIVSEVHGTTRDYLEGWISLKGVP-VLLYDTAGIRD 279 +V + G +AGK+SLFNL EDR + E + TT I+ GV VL DT G Sbjct: 185 QVSIVGYASAGKTSLFNLLTGEDRPVGPE-YFTTLQPKHSRITWGGVEGVLAADTVGFIR 243 Query: 280 GGDPVETEGIRRTREILSHADAVIYLVDGTEGFS-------XXXXXXXXXXXXXRPLIPV 332 P E T + H+DA+++++D E S P++ Sbjct: 244 DVPPEIVEAFHATLAEVKHSDAIVFVIDAAEPPSDIEEKLHAGIDTLARIGALSAPMVIA 303 Query: 333 WNKVDA----------------SAVLPPPEGFIPLSCRTGEGFARLEETLHRV 369 NK+DA +++LP IP+S +TG G RL ++ ++ Sbjct: 304 ANKIDALQPPEIGERIALIEREASILPHSPPVIPISAKTGYGVDRLVRSIIKI 356 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 489,677 Number of Sequences: 1700 Number of extensions: 23860 Number of successful extensions: 118 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 116 Number of HSP's gapped (non-prelim): 1 length of query: 449 length of database: 492,079 effective HSP length: 80 effective length of query: 369 effective length of database: 356,079 effective search space: 131393151 effective search space used: 131393151 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718006|ref|YP_003873538.1| glucose-inhibited division protein A [Spirochaeta thermophila DSM 6192] (619 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 647,900 Number of Sequences: 1700 Number of extensions: 30937 Number of successful extensions: 103 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103 Number of HSP's gapped (non-prelim): 0 length of query: 619 length of database: 492,079 effective HSP length: 82 effective length of query: 537 effective length of database: 352,679 effective search space: 189388623 effective search space used: 189388623 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718007|ref|YP_003873539.1| methyltransferase [Spirochaeta thermophila DSM 6192] (214 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 221,079 Number of Sequences: 1700 Number of extensions: 9886 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 214 length of database: 492,079 effective HSP length: 73 effective length of query: 141 effective length of database: 367,979 effective search space: 51885039 effective search space used: 51885039 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718008|ref|YP_003873540.1| hypothetical protein STHERM_c02940 [Spirochaeta thermophila DSM 6192] (482 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 423,920 Number of Sequences: 1700 Number of extensions: 16589 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 482 length of database: 492,079 effective HSP length: 80 effective length of query: 402 effective length of database: 356,079 effective search space: 143143758 effective search space used: 143143758 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718009|ref|YP_003873541.1| sensory box/GGDEF family protein [Spirochaeta thermophila DSM 6192] (478 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 509,179 Number of Sequences: 1700 Number of extensions: 24720 Number of successful extensions: 91 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91 Number of HSP's gapped (non-prelim): 0 length of query: 478 length of database: 492,079 effective HSP length: 80 effective length of query: 398 effective length of database: 356,079 effective search space: 141719442 effective search space used: 141719442 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718010|ref|YP_003873542.1| hypothetical protein STHERM_c02960 [Spirochaeta thermophila DSM 6192] (155 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 154,552 Number of Sequences: 1700 Number of extensions: 6042 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 155 length of database: 492,079 effective HSP length: 70 effective length of query: 85 effective length of database: 373,079 effective search space: 31711715 effective search space used: 31711715 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718011|ref|YP_003873543.1| 3-dehydroquinate dehydratase [Spirochaeta thermophila DSM 6192] (491 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431110|ref|NP_147334.2| shikimate dehydrogenase [Aeropyrum... 79 2e-16 >gi|118431110|ref|NP_147334.2| shikimate dehydrogenase [Aeropyrum pernix K1] Length = 273 Score = 79.3 bits (194), Expect = 2e-16 Identities = 72/257 (28%), Positives = 110/257 (42%), Gaps = 13/257 (5%) Query: 231 VLFGVIGNPVLHSRSPHLHNPVYRREGMDAVYLPIQVDE--LASFMDLADELPLQGLSVT 288 + + G+ V S SP ++ + G+ Y + LA + +A EL G +VT Sbjct: 2 IRLALFGSGVSSSLSPAIYRGFAAKRGLRLEYRVYEAGPGGLAPALRMAGEL--HGFNVT 59 Query: 289 IPHKEGVIPFLTVCDPVVQAVGSCNTMVRRDGGWFGTSTDVEGFLRPLREEIARGGDPVM 348 P K + + D +A+G+ NTMV + GW G +TD +GFL L+ A D + Sbjct: 60 KPLKREALSLASTLDSHARAIGAVNTMVAGEEGWEGFNTDWKGFLDSLKLYTASPPDTAL 119 Query: 349 KXXXXXXXXXXXXXXXXXXXQEGFRVLVLNRTEERARVLAGE---FGVDWGALSPESAER 405 RVL+ +RT AR A + G + + P E Sbjct: 120 VIGAGGAGRAAAYALATWGAG---RVLIASRTGLTARRAAQDLAGLGAEVEPVPPGGLED 176 Query: 406 MREFRGLIVQTTSVGMEGKEPASPVPWYRFEGDEICYDIVYTPRITPFLEAARRAGCRII 465 ++V T +G +G ++PV EG I D+VY P TPFL A +GC + Sbjct: 177 AAAASDVVVNATPLGWDG--VSTPVERGFREGC-IAVDMVYRPLATPFLRRAAASGCTPV 233 Query: 466 TGDRMLEAQAEEQMRLF 482 G ML QA E + ++ Sbjct: 234 DGLWMLAIQAAENIAVW 250 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 546,342 Number of Sequences: 1700 Number of extensions: 26591 Number of successful extensions: 83 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81 Number of HSP's gapped (non-prelim): 1 length of query: 491 length of database: 492,079 effective HSP length: 81 effective length of query: 410 effective length of database: 354,379 effective search space: 145295390 effective search space used: 145295390 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718012|ref|YP_003873544.1| saccharopine dehydrogenase [Spirochaeta thermophila DSM 6192] (397 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 442,267 Number of Sequences: 1700 Number of extensions: 20683 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61 Number of HSP's gapped (non-prelim): 0 length of query: 397 length of database: 492,079 effective HSP length: 79 effective length of query: 318 effective length of database: 357,779 effective search space: 113773722 effective search space used: 113773722 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718013|ref|YP_003873545.1| carboxynorspermidine decarboxylase [Spirochaeta thermophila DSM 6192] (385 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 463,484 Number of Sequences: 1700 Number of extensions: 24009 Number of successful extensions: 76 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76 Number of HSP's gapped (non-prelim): 0 length of query: 385 length of database: 492,079 effective HSP length: 78 effective length of query: 307 effective length of database: 359,479 effective search space: 110360053 effective search space used: 110360053 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718014|ref|YP_003873546.1| agmatinase [Spirochaeta thermophila DSM 6192] (291 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430993|ref|NP_147142.2| hypothetical protein APE_0316.1 [A... 110 4e-26 gi|118431540|ref|NP_148071.2| agmatinase [Aeropyrum pernix K1] 108 2e-25 >gi|118430993|ref|NP_147142.2| hypothetical protein APE_0316.1 [Aeropyrum pernix K1] Length = 218 Score = 110 bits (275), Expect = 4e-26 Identities = 69/195 (35%), Positives = 107/195 (54%), Gaps = 15/195 (7%) Query: 92 LRSGRVPVLLGGEHTVSVGAWEALKEVYGPGQVGIVQIDAHADLRDTYEGSRFSHACVMR 151 LR GR+ + LGG+H+++ AL+ Y G++G+V +DAH DL D YEG R+SHAC +R Sbjct: 23 LRGGRLFIFLGGDHSITYATLRALRSFYR-GRLGLVYLDAHPDLYDEYEGDRYSHACTLR 81 Query: 152 RALDHGF----SIFQAGVRSLSPGEVALRRELAGRQVFWKDAPELRRTGAPLALPPDFPS 207 R ++ GF + AGVR+ +P ++ E AG V + E +P Sbjct: 82 RIVEEGFVDPRDVILAGVRAATPSQLDF-AEKAGITVLGVEEAEDLAAYLKEGMP----- 135 Query: 208 NVYLTIDVDGFDPSVVWETGTPEPGGLFWYEVLDFIERVAEAHTVVGFDVVELAPAKG-S 266 Y++ D+D DP+ G PEPGGL E++ I+ + E V+ FDVVE +P S Sbjct: 136 -YYISYDLDVLDPAYAPGVGNPEPGGLSTREMVRIIKSLPE--DVLAFDVVEASPPHDPS 192 Query: 267 HVGAFVAARLVYQVM 281 + F AA+++ + + Sbjct: 193 GLTLFTAAKIIRETL 207 >gi|118431540|ref|NP_148071.2| agmatinase [Aeropyrum pernix K1] Length = 312 Score = 108 bits (270), Expect = 2e-25 Identities = 93/261 (35%), Positives = 122/261 (46%), Gaps = 21/261 (8%) Query: 15 SPEEAFFHVIPVPYERTTSFGKGAARGPSAILEASGQLEV--WDGRGIPAEVGIHTGGPV 72 S EE+ F VI VPY+ T+SF G P I AS +LE + G V I G V Sbjct: 25 SREESLFSVIGVPYDSTSSFRPGQRFAPREIRRASIELESNGYYVEGDIDRVPIADEGDV 84 Query: 73 KA--RTXXXXXXXXXXXXXXXLRSGRVPVLLGGEHTVSVGAWEALKEVYGPGQVGIVQID 130 A + R G+VPV+LGGEH V++GA L + +V +D Sbjct: 85 AAVPGSTLLTLERVARVVEDLAREGKVPVVLGGEHLVTLGALRGLAAA--GVKPCVVVLD 142 Query: 131 AHADLRDTYEGSRFSHACVMRRALDH-GFSIFQAGVRSLSPGEVALRRELAGRQVFWKDA 189 AH DLR+ Y G RFSHA V RR L+ G + GVR+ GE L E D Sbjct: 143 AHFDLRNDYLGERFSHATVFRRVLEELGVKLLYIGVRAYEAGEERLAVESG-----LIDY 197 Query: 190 PELRR------TGAPLALP--PDFPSNVYLTIDVDGFDPSVVWETGTPEPGGLFWYEVLD 241 +RR GA LA +Y++ID+D +DP+ G PEPGG E L Sbjct: 198 VPMRRMDIVGVDGAVLAARRFTGDCEKIYISIDMDFYDPAYAPGVGNPEPGGASSREGLA 257 Query: 242 FIERVAEAHTVVGFDVVELAP 262 ++ + V G DVVE++P Sbjct: 258 LASQLGD-RRVCGIDVVEVSP 277 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 348,029 Number of Sequences: 1700 Number of extensions: 17128 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 2 length of query: 291 length of database: 492,079 effective HSP length: 76 effective length of query: 215 effective length of database: 362,879 effective search space: 78018985 effective search space used: 78018985 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718015|ref|YP_003873547.1| AMP-binding protein [Spirochaeta thermophila DSM 6192] (607 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431813|ref|NP_148513.2| long-chain-fatty-acid--CoA ligase ... 146 2e-36 gi|14601325|ref|NP_147860.1| fatty-acid--CoA ligase [Aeropyrum p... 129 2e-31 gi|118431020|ref|NP_147199.2| medium-chain-fatty-acid--CoA ligas... 101 5e-23 gi|14601327|ref|NP_147862.1| fatty-acid--CoA ligase [Aeropyrum p... 66 3e-12 gi|118431417|ref|NP_147884.2| acetyl-coenzyme A synthetase [Aero... 60 2e-10 >gi|118431813|ref|NP_148513.2| long-chain-fatty-acid--CoA ligase [Aeropyrum pernix K1] Length = 550 Score = 146 bits (368), Expect = 2e-36 Identities = 156/558 (27%), Positives = 228/558 (40%), Gaps = 88/558 (15%) Query: 51 ASVLRDLGVGPGDRVMILAENRPGWPVAYFGISLAGGISVPVLLDFSTDQVREVASHAGV 110 A LR GVG GD V + N P + +A++G +AG I P+ + +S ++R S Sbjct: 53 AGYLRSRGVGKGDVVGLFLPNSPQFAIAFYGALIAGAIVSPMNVLYSPREIRHQLSDNKA 112 Query: 111 RVVCATERSLEKLREAGLLEGDLPVLLIDRMDD-AGLEVL------------EGGDRKHR 157 RV+ A + +++ AGL VL D GL+ L +GG K Sbjct: 113 RVLVALDMFKDRVL-AGLPSSVEEVLWTGIQDYLPGLKALLYKLFKKPPSPPKGGIHKKF 171 Query: 158 EYAPDFTPVFPDP-----DETASLIYTSGTTGHSKGVMLSHASLIFEVEASRSIFK--VY 210 A P+ P ++ A+L+YT GTTG KG ML+H +L+ V + FK V Sbjct: 172 TDALKHEPIDSKPEINPHEDVAALMYTGGTTGTPKGAMLTHRNLLANVLQIDAWFKRGVR 231 Query: 211 PRDRFFSVLPLAHTYECTIGMLIATASGARTTYLGRPPTASVLLPALREVRPTVMLTVPL 270 +D F LP H Y T +L + A T + P ++ + + TV VP Sbjct: 232 GKDVFVGALPWFHIYGLT-AVLNSGVQKAATIIVYARPNIEEIMRDIERYKATVFHGVPT 290 Query: 271 IIEKIYRTKVKPSLESHPLYRFPLTRPLATKIAGRKLLASXXXXXXXXXXXXXXXXPDVE 330 + I +HP R L I+G + L E Sbjct: 291 LYRMII---------NHPKVEKFNLRSLEVCISGAEPLPKAV----------------AE 325 Query: 331 AFLKASGFPYAIGYGLTETAPLV-AGSSVGKTVLRSTGPALKGVEVRIVDQEGRVVGGVG 389 F++ +G GYGLTET+P+ +G+ S G + + D E Sbjct: 326 RFMEITGAKLREGYGLTETSPVTHVNPIMGEARYGSIGIPVPSTVAAVADPE-------- 377 Query: 390 APRDARPGAEGEIQVRGPNVMKGYYRDPERTREAFTED---GWFRTGDLGAMDRKGRLFI 446 +P PG GE+ V GP VMKGYY PE + F E W RTGD+ MD G +I Sbjct: 378 SPAILEPGQVGELVVSGPQVMKGYYNRPEENEKVFFECCGLRWLRTGDMARMDEDGYFYI 437 Query: 447 KGRLKSVIVGPSGENIYPEEIESLLNLSDYVEESLVYEGEKGELVALIVLSERAKTLYAA 506 R K I+ G +++P EIE +L + V E+ V E + A Sbjct: 438 VDRKKD-IIKYKGYSVFPREIEEVLYRHECVREAAVIGVPHPEY-------NEVPKAFVA 489 Query: 507 LEDGIKEAGRAAQEGVHEVTREVGELVQQVASAAKEGTEQVRKGVEDVVKELVAMVNRRL 566 L D K G+ E + E R + +A ++R ED+ K V + RR+ Sbjct: 490 LRDECK--GKVKPEDIIEFAR------KHLAPYKVPKEVEIR---EDLPKSGVGKILRRV 538 Query: 567 PGFSRIRKVEIREEPLEK 584 +REE L+K Sbjct: 539 ----------LREEELKK 546 >gi|14601325|ref|NP_147860.1| fatty-acid--CoA ligase [Aeropyrum pernix K1] Length = 651 Score = 129 bits (325), Expect = 2e-31 Identities = 138/594 (23%), Positives = 244/594 (41%), Gaps = 78/594 (13%) Query: 39 TYAQLGARSAGVASVLRDLGVGPGDRVMILAENRPGWPVAYFGISLAGGISVPVLLDFST 98 T+ R A A L +LG+GPGD + NRP W + G+ L GG ++ + D + Sbjct: 52 TWRDYYLRVAYAALALENLGLGPGDTGAFITFNRPSWVIYEVGVQLLGGRAMGIYRDSLS 111 Query: 99 DQVREVASHAGVRVVCAT-ERSLEKLREAGLLEGDLPVLLIDRMDD-------AGLEVL- 149 D+V + + V + L+++ ++G+ D+ +++D G +++ Sbjct: 112 DEVGYLLDSGDAKFVLVEGQEQLDRVLDSGV---DVDKIIVDEAKGLHQYRGMVGSKLVT 168 Query: 150 -------------EGGDRKHREYAPDFTPVFPDPDETASLIYTSGTTGHSKGVMLSHASL 196 +GGD++ ++ + +PD L TSGTTG K M+S ++ Sbjct: 169 FGDVMRLGRKLYSDGGDQQVKKLMGEL-----EPDMVCGLFTTSGTTGLPKLAMISFKNM 223 Query: 197 IFEVEASRSIFKVYPRDRFFSVLPLAHTYECTIGMLIATASGARTTYLGRPPTASVLLPA 256 + ++ V + S LP A E + + G + + P T L Sbjct: 224 LAMAHQLNTVDPVREDWEYVSFLPTAWIGEQMMSIPYHMIGGFKVNF---PETPHTLWRD 280 Query: 257 LREVRPTVMLTVPLIIEKIYRTKVKPSLESHPLYR--FPLTRPLATKIAGRKLLASXXXX 314 RE+ P M + P + E+I + + ++ P+ R F L + + A R+L+ Sbjct: 281 FREIAPHFMFSPPRVWERIAKDIMARVDDADPIKRAAFRLAYKIGYEAARRRLVKGRSRP 340 Query: 315 XXXXXXXXXXXX-PDVEAFLKASGFPYAI----GYGLTETAPLVAGSSVGKTVLRSTGPA 369 + A L +G + G + ++ S+G + + G Sbjct: 341 PTLWRALYYLAYWLALRAVLDKAGLKRIVRAYTGGAMIGEDYVIFYHSLGVNLKQIYGQT 400 Query: 370 -LKGVEVRIVDQEGRVVGGVGAP---RDARPGAEGEIQVRGPNVMKGYYRDPERTREAFT 425 + G+ V D + R VG P + + +GEI +R P +MKGYY++ E T + Sbjct: 401 EVAGIAVVHPDDDVRP-DTVGKPLPLTEVKIAEDGEILMRSPAMMKGYYKNEEATAKTIV 459 Query: 426 EDGWFRTGDLGAMDRKGRLFIKGRLKSVIVGPSGENIYPEEIESLLNLSDYVEESLVYEG 485 DGW RTGD+G + G L + R K +I+ G + P+ I++ L S Y+ E+ + Sbjct: 460 -DGWLRTGDVGVLTEDGHLKVLDRAKEIIILSDGTKVAPQVIQNKLKFSPYIGEAAIVGS 518 Query: 486 EKGELVALIVLSERAKTLYAALEDGIKEAGRAAQEGVHEVTREVGELVQQVASAAKEGTE 545 K L AL+ + + +A E R ++++ Sbjct: 519 GKPYLAALVNIDFEIVSRWA-------ERRRIPFTSYSDLSQ------------------ 553 Query: 546 QVRKGVEDVVKELVAMVNRRLPGFSRIRKV-----EIREEPLEKTATHKIRRFL 594 + V ++K + VNRRLP RIR+ E + E T T K+RR + Sbjct: 554 --KPEVLQLLKREIEKVNRRLPEKERIRRFVSLFKEFHPDDEEMTRTRKLRRMV 605 >gi|118431020|ref|NP_147199.2| medium-chain-fatty-acid--CoA ligase [Aeropyrum pernix K1] Length = 555 Score = 101 bits (252), Expect = 5e-23 Identities = 121/456 (26%), Positives = 194/456 (42%), Gaps = 58/456 (12%) Query: 36 EPVTYAQLGARSAGVASVLRDLGVGPGDRVMILAENRPGWPVAYFGISLAGGISVPVLLD 95 E T++ R +A+ LR LGV DRV + N YF + G + P+ + Sbjct: 42 ERYTFSDAARRIESLANALRALGVSGLDRVATMDWNTHWHYETYFAAPMMGAVLHPLNVR 101 Query: 96 FSTDQVREVASHAGVRVVCATERSLEKLREAGLLEGDLP--VLLID---RMDDAGLEVLE 150 + +++ + +HA +V+ L KL EA L V+++D D L Sbjct: 102 LAPNEIAYIMNHAEDKVLIVHSDFL-KLAEAILPHAPSVEHVVIVDAESHPDRIAGRRLH 160 Query: 151 GGDRKHREYAPDFTPVFPDPDETASLIYTSGTTGHSKGVMLSHASLIFEVE------ASR 204 + +E+ F D + A++ YTSGTTG KGV SH ++ A+R Sbjct: 161 NYEDLIKEHGGRFEWPELDENRPAAMGYTSGTTGLPKGVYHSHRMIVVHALSGALALATR 220 Query: 205 SIFKVYPRDRFFSVLPLAHTYECTIGMLIATASGARTTYLGRPPTASVLLPALREVRPTV 264 +V D ++P+ H + + AT +G + + GR VLL + + TV Sbjct: 221 GRRRVTGDDTLLHIVPMFHVLAWGLPYM-ATLTGMKQVFPGRLDP-KVLLDLIVGEKVTV 278 Query: 265 MLTVPLIIEKIYRTKVKPSLESHPLY-RFPLTRPLATKIAGRKLLASXXXXXXXXXXXXX 323 VP I+ + SHP ++ L+ L + G + L Sbjct: 279 TAGVPTILYMLL---------SHPESGKYDLSGLLF--VNGGQALPKGLADAA------- 320 Query: 324 XXXPDVEAFLKASGFPYAIGYGLTETAPLVAGSSVGKTVLR-------STGPALKGVEVR 376 + G +GYG+TETAP++ ++V + + +TG + VE+ Sbjct: 321 ----------RKRGIEVIVGYGMTETAPILTLANVPQKYMDRSEELSLTTGWPVPLVELM 370 Query: 377 IVDQEGRVVGGVGAPRDARPGAEGEIQVRGPNVMKGYYRDPERTREAFTEDGWFRTGDLG 436 + D E P+D + GEI VR P V YY+DPE+T +A+ GWF TGD+ Sbjct: 371 VADPETLEP----VPKDGK--TMGEIVVRTPWVTPEYYKDPEKTEKAW-RGGWFHTGDIA 423 Query: 437 AMDRKGRLFIKGRLKSVIVGPSGENIYPEEIESLLN 472 +G + I R K +I GE I +ESL++ Sbjct: 424 VWTPEGYIQIVDRDKDIIKS-GGEWISSLRLESLIS 458 >gi|14601327|ref|NP_147862.1| fatty-acid--CoA ligase [Aeropyrum pernix K1] Length = 529 Score = 65.9 bits (159), Expect = 3e-12 Identities = 105/469 (22%), Positives = 183/469 (39%), Gaps = 58/469 (12%) Query: 39 TYAQLGARSAGVASVLRDLGVGPGDRVMILAENRPGWPVAYFGISLAGGISVPVL--LDF 96 T+ L + + L+ GV G +V + +EN +A+ LA G + ++ L Sbjct: 69 TWKSLASFIERIGGWLQSKGVSHGAQVAVASENLIE-AIAFSLAVLASGARLVLIDPLTV 127 Query: 97 STDQVREVASHAGVRVVCATERSLEKLREAGLLEGDLPVLLIDRMDDAGLEVLEGGDRKH 156 D ++ G+ + A+ LE+ REA ++ ++ + LEV G + Sbjct: 128 GEDLEWQLEGRRGLETLAASRGFLERNREAVSRIDNISTVIELSSNPQPLEV-GGVEVLG 186 Query: 157 REYAPDFTPVFPD---PDETASLIYTSGTTGHSKGVMLSHASLIFEVEASRSIFKVYPRD 213 T D PD+ + IY +G G + + SH L + + + Sbjct: 187 LNEVLSSTAALEDDVEPDDDSFSIYYAGIAGRTMQAIHSHLGLWMGSKVFAATAGIDRET 246 Query: 214 RFFSVLPLAHTYECTIGMLIATASGARTTYLGR--PPTASVLLPALREVRPTVMLTVPLI 271 P H ++ G L R P A+ L+ +LR + VPL+ Sbjct: 247 VSLLATPFTHVLGLQASLVAPLIQGGTVVALQRWNPRLAARLVSSLRI---NYLAGVPLM 303 Query: 272 IEKIYRTKVKPSLESHPLYRFPLTRPLATKIAGRKLLASXXXXXXXXXXXXXXXXPDVEA 331 +++ L PL L + Sbjct: 304 FQQLLDLGATSGLRLAISAGAPLPPELQRR------------------------------ 333 Query: 332 FLKASGFPYAIGYGLTETAPLVAGSSVGKTVLRSTGPALKGVEVRIVDQEGRVVGGVGAP 391 F + +G P YG++E+ L + + + G L GVEV ++ +G + Sbjct: 334 FGRETGIPLLQAYGMSESLILTFQTPKIAEIEGTIGVPLPGVEVSLLGDDGLL------- 386 Query: 392 RDARPGAEGEIQVRGPNVMKGYYRDPERTREAFTEDGWFRTGDLGAMDRKGRLFIKGRLK 451 + P GE+ V+ P VMKGY + E ++ AF DGW RTGD+ + +G +F +G ++ Sbjct: 387 --SPPPGVGELVVQAPWVMKGYEFEEENSK-AFI-DGWLRTGDVIEITDRGVMFFRG-VR 441 Query: 452 SVIVGPSGENIYPEEIESLLNLSDYVEESLVY---EGEKGEL-VALIVL 496 I+ G I ++E +L V E+ V+ G+ G++ VA +VL Sbjct: 442 KRIIKYKGYAILARDLEVILESHPDVLEARVWGEPAGDVGQIPVASVVL 490 >gi|118431417|ref|NP_147884.2| acetyl-coenzyme A synthetase [Aeropyrum pernix K1] Length = 656 Score = 59.7 bits (143), Expect = 2e-10 Identities = 58/197 (29%), Positives = 81/197 (41%), Gaps = 19/197 (9%) Query: 20 YAERPAFDLFWNGRIEEP--VTYAQLGARSAGVASVL-RDLGVGPGDRVMILAENRPGWP 76 Y R AF W G E TY QL +A +L +D G+G GD V I A P Sbjct: 96 YGHREAFT--WVGEDGEVRRYTYLQLKDEVDRMAKLLSQDYGLGVGDVVAIYAPMMPESI 153 Query: 77 VAYFGISLAGGISVPVLLDFSTDQVREVASHAGVRVVCATERSLEKLREAGLLE------ 130 A G ++ P+ F+ V E RV+ + L + R L E Sbjct: 154 AAMLAAMKVGAVASPIFSGFAPPAVAERLKLGEARVLVTVDGYLRRGRRIALKEQADQAV 213 Query: 131 ----GDLPVLLIDRMDDAGLEVLEGGD----RKHREYAPDFTPVFPDPDETASLIYTSGT 182 G + +++ R + +EG D R A P DP+ A L++TSGT Sbjct: 214 KLAGGAVEHVIVVRRLGIDVPWVEGRDEWYDRAIAGKAGSAEPEELDPEHPALLLFTSGT 273 Query: 183 TGHSKGVMLSHASLIFE 199 TG KG ++SHA I + Sbjct: 274 TGRPKGAVISHAGAILQ 290 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 652,522 Number of Sequences: 1700 Number of extensions: 31998 Number of successful extensions: 157 Number of sequences better than 1.0e-04: 5 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 136 Number of HSP's gapped (non-prelim): 11 length of query: 607 length of database: 492,079 effective HSP length: 82 effective length of query: 525 effective length of database: 352,679 effective search space: 185156475 effective search space used: 185156475 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718016|ref|YP_003873548.1| hypothetical protein STHERM_c03020 [Spirochaeta thermophila DSM 6192] (246 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.140 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 275,605 Number of Sequences: 1700 Number of extensions: 12799 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 246 length of database: 492,079 effective HSP length: 74 effective length of query: 172 effective length of database: 366,279 effective search space: 62999988 effective search space used: 62999988 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718017|ref|YP_003873549.1| hypothetical protein STHERM_c03030 [Spirochaeta thermophila DSM 6192] (167 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 147,150 Number of Sequences: 1700 Number of extensions: 4738 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 167 length of database: 492,079 effective HSP length: 71 effective length of query: 96 effective length of database: 371,379 effective search space: 35652384 effective search space used: 35652384 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718018|ref|YP_003873550.1| ATP-binding ABC transporter protein [Spirochaeta thermophila DSM 6192] (303 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 141 2e-35 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 135 1e-33 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 132 8e-33 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 130 3e-32 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 117 3e-28 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 114 2e-27 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 110 3e-26 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 107 4e-25 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 105 2e-24 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 102 2e-23 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 90 6e-20 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 90 6e-20 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 90 6e-20 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 87 4e-19 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 87 7e-19 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 86 9e-19 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 85 3e-18 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 83 1e-17 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 82 2e-17 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 82 2e-17 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 81 4e-17 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 78 2e-16 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 75 2e-15 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 73 8e-15 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 72 1e-14 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 67 7e-13 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 65 2e-12 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 65 2e-12 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 64 4e-12 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 64 5e-12 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 63 1e-11 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 59 2e-10 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 57 6e-10 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 57 7e-10 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 55 2e-09 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 54 4e-09 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 54 5e-09 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 52 2e-08 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 52 2e-08 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 47 6e-07 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 41 4e-05 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 141 bits (356), Expect = 2e-35 Identities = 108/308 (35%), Positives = 144/308 (46%), Gaps = 17/308 (5%) Query: 1 MVVIEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLI 60 MVV E ++VK YG A+ GVS + GE+ ++GPNGAGKTT ++ + L RP G Sbjct: 6 MVVAE--ELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEA 63 Query: 61 RVWGVVPWSREGRGVRSTIGCQLQDDALPRGMKVREAVRLFAAIYG---SEDRAWWEEVL 117 + G RE VR IG QD M + V + A +YG SE R EVL Sbjct: 64 WIAGY-SIVREPGNVRRVIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEARERTREVL 122 Query: 118 SVCGLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRR 177 L R SGG +FLDE T GLD H RR +W I Sbjct: 123 DYLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIED 182 Query: 178 VKEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELVEAYGGGYV--------- 228 +K T++LTTHYMEEAE+L DRV ++ +GR+VA G+P EL G V Sbjct: 183 LKRSAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEELKARVKGETVYIELKDPEY 242 Query: 229 IAPXXXXXXXXXXXXXXXXXWRDGVVVCRGGKEQVVEVVRRLVHAEGIGGLSIRRPSLED 288 P + V V R + ++ + R ++ + +SI R +LED Sbjct: 243 TEPLVLALKEKLGLEPSVVEGKVAVRVDRA--DTLLPELARALNGFPVKAISITRATLED 300 Query: 289 VFLSLTGR 296 VF+ LTGR Sbjct: 301 VFIELTGR 308 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 135 bits (340), Expect = 1e-33 Identities = 97/304 (31%), Positives = 137/304 (45%), Gaps = 16/304 (5%) Query: 4 IEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRVW 63 +E R + KR+G R A+AGVS V +GE I+GPNG+GKTTLL + G+ RP G +RV Sbjct: 5 VEARGLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVC 64 Query: 64 GVVPWSREGRGVRSTIGCQLQDDALPRGMKVREAVRLFAAIYGSEDRAWWEEVLSVCGLG 123 G W R R IG QD + R M E + + + G E V + Sbjct: 65 GYDVWGDGWREARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREARRVLEML 124 Query: 124 GREDARWE---ELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRRVKE 180 G ED LSGG V LDE SGLD R +W +R+ + Sbjct: 125 GFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASLRKAFK 184 Query: 181 MGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELVEAYGGGYVIAPXXXXXXXXX 240 G TV+ ++H +EAE DRV+++H+GR+ A G P EL++ Y + Sbjct: 185 -GRTVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPRELIQRYAPKPRVRVWADRAPDGL 243 Query: 241 XXXXXXXXWRDGVVVCRGGKEQVVEVVRRLVHAEGIGGLSIRR-----PSLEDVFLSLTG 295 + D ++ G V R+ A G+ + R PSL +VF ++TG Sbjct: 244 EPVHTGPGFSDYLIEAPGD-------VARIASAYSGAGILVERIEVLKPSLREVFFAVTG 296 Query: 296 RYED 299 D Sbjct: 297 EEMD 300 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 132 bits (333), Expect = 8e-33 Identities = 105/293 (35%), Positives = 136/293 (46%), Gaps = 16/293 (5%) Query: 18 ALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRVWGVVPWSREGRGVRS 77 AL GV L V G + ++GPNGAGKTTL++ + L P+ G RV G RE VRS Sbjct: 28 ALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGF-DVVREANNVRS 86 Query: 78 TIGCQLQDD-ALPRGMKVREAVRLFAAIYG---SEDRAWWEEVLSVCGLGGREDARWEEL 133 IG L + AL + + + F+ +YG E + +E+L + GL R E Sbjct: 87 RIGVVLGGERALYWRLSGWDNLWFFSQLYGIPPREAKRRVKELLEIVGLEEWAHVRVENY 146 Query: 134 SGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRRVKEMGTTVVLTTHYME 193 S G + LDE T GLDP REV +IRR+ G TV+LTTHYM Sbjct: 147 SKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVLLTTHYMV 206 Query: 194 EAEVLCDRVVLLHQGRVVAMGSPGELVEAYGGGYVI------APXXXXXXXXXXXXXXXX 247 EAE L DRV ++ +GR+VA G P +L GG VI Sbjct: 207 EAEELSDRVAIISKGRIVAEGPPEDLKSLVGGESVIELKVMGGDRVSMLLERLGGRVISV 266 Query: 248 XWRDGVVVCRGGKEQVVEVVRRLVHA-----EGIGGLSIRRPSLEDVFLSLTG 295 RDG V R + + L+ I GL +R PSLEDVF+ L G Sbjct: 267 VERDGARVFRVLVSEPDSFIEALLAELTRINASIRGLDVRSPSLEDVFIKLAG 319 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 130 bits (328), Expect = 3e-32 Identities = 85/223 (38%), Positives = 111/223 (49%), Gaps = 3/223 (1%) Query: 4 IEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRVW 63 +E V KR G R L VSL V G V G+VGPNGAGKTTL + GL R +RG + + Sbjct: 9 VEAEGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALL 68 Query: 64 GVVPWSREGRGVRSTIGCQLQDDALPRGMKVREAVRLFAAIYGSED-RAWWEEVLSVCGL 122 G P R G + + +D R M E +RL+A+IYG ED + EE + GL Sbjct: 69 G-EPVERAGGSLFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLEGYLEEASRLSGL 127 Query: 123 GGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRRVKEM- 181 GGR R S G LDE T+GLDP + L++ E Sbjct: 128 GGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERH 187 Query: 182 GTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELVEAYG 224 G TV+L++H M E E +C + ++ GR+V GSPGE V G Sbjct: 188 GVTVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGEAVRRTG 230 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 117 bits (294), Expect = 3e-28 Identities = 83/224 (37%), Positives = 115/224 (51%), Gaps = 6/224 (2%) Query: 3 VIEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRV 62 V+E R VVK+Y + L V L V GE G+VGPNGAGKTTL++ GL R + G + + Sbjct: 4 VLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLL 63 Query: 63 WGVVPWSREGRGVRSTIGCQLQDDALPRGMKVREAVRLFAAIYGSE-DRAWWEEVLSVCG 121 G+ PW RE R R +G + LP M V E + AAI GS R W + G Sbjct: 64 NGLDPW-REPR-AREGVGVVFERPNLPSSMPVVEFLESAAAIIGSSPSRVDW--AIRAAG 119 Query: 122 LGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRRV-KE 180 L G E + +LS G + DE TS LDP RREV L+ R+ +E Sbjct: 120 LEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLNRE 179 Query: 181 MGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELVEAYG 224 G ++++++H + E + R+ +L GR+ A GSP +L G Sbjct: 180 HGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDLFRRAG 223 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 114 bits (286), Expect = 2e-27 Identities = 93/298 (31%), Positives = 129/298 (43%), Gaps = 18/298 (6%) Query: 2 VVIEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIR 61 VVIEV +VKRYG EAL GVS V GEV G +GPNGAGKTT + + G RP G R Sbjct: 3 VVIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSAR 62 Query: 62 VWGVVPWSREGRGVRSTIGCQLQDDALPRGMKVREAVRLFAAIYGSEDRAWWEEVLSVCG 121 V+GV ++ GVR +G + G+ + + + G R E+L Sbjct: 63 VFGVELYNPGASGVRRRVGYVPGEFEFYGGVSGGRMLDYWCRLVGGCSRGVVRELLEAFP 122 Query: 122 LGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRRVKEM 181 L + S G V +DE T+GLDP R V +R Sbjct: 123 L--PLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDFVRSKARE 180 Query: 182 GTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELVEAYGGGYVIAPXXXXXXXXXX 241 G TV ++H + E + + DRV LL G +VA+ L+ G V+ Sbjct: 181 GVTVFFSSHVLSEVQRVADRVGLLRSGVLVALEDVSSLLRK--SGKVVKARVSKNLSPDR 238 Query: 242 XXXXXXXWRDGVVVCRGGKE--------QVVEVVRRLVHAEGIGGLSIRRPSLEDVFL 291 DGV V R E + +E V R++ G+ L +R +LE+VF+ Sbjct: 239 LAV------DGVRVIRSNGELELVVTSGKALESVLRMLLDAGLEDLEVRDATLEEVFM 290 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 110 bits (276), Expect = 3e-26 Identities = 86/233 (36%), Positives = 117/233 (50%), Gaps = 20/233 (8%) Query: 3 VIEVRDVVKRYGER-------EALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRP 55 +IE R +VKR+ EAL GVS V EGE+ +GPNGAGKTT + + L P Sbjct: 5 MIEARGLVKRFVSGRIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDP 64 Query: 56 ERGLIRVWGVVPWSREGRGVRSTIGCQLQDDALPRG----MKVREAVRLFAAIYG---SE 108 + G RV G +E VR IG L ++ RG + RE + F IYG E Sbjct: 65 DGGEARVAGF-DVVKERWEVRKRIGVML---SVERGFYWKLTGRENLYYFGRIYGIPQGE 120 Query: 109 DRAWWEEVLSVCGLG--GREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPH 166 ++ +EVL + GL G D +EE+S G + LDE T GLDP Sbjct: 121 LKSRIKEVLDLVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPA 180 Query: 167 GRREVWHLIRRVKEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGEL 219 R + +IR + G T+ +TTH M EAE++ DRV ++ GR+ G+P EL Sbjct: 181 SARTIRGVIRSLASEGRTIFITTHNMVEAEMISDRVGIIIGGRIAMEGTPDEL 233 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 107 bits (267), Expect = 4e-25 Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 12/235 (5%) Query: 2 VVIEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIR 61 ++++VRDV KR+G EAL GVS V+ GE G++GPNGAGKTTL + G+ P+RG + Sbjct: 3 IILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVI 62 Query: 62 VWGV--VPWSREGRGVRSTIGCQLQDDALPRGMKVREAVRLFAAIYGSEDRAWWE---EV 116 GV W R R+ I Q + V V + A + ++ R E E Sbjct: 63 YKGVDITGWPAYRRS-RAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAMEA 121 Query: 117 LSVCGLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIR 176 + + GL G+ED ++L+ + LDE+ +GL P ++ + + Sbjct: 122 IDMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLL 181 Query: 177 RVKEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGE------LVEAYGG 225 + + G T+++ H M +RV++LH G +A G+P E ++EAY G Sbjct: 182 EISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVASNKLVIEAYMG 236 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 105 bits (261), Expect = 2e-24 Identities = 87/238 (36%), Positives = 112/238 (47%), Gaps = 10/238 (4%) Query: 2 VVIEVRDVVKRY---GER-EALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPER 57 + + V VVK Y GER AL VSL V GEV I+GP+G+GKTTLL + G+ RP Sbjct: 9 LAVVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNA 68 Query: 58 GLIRVWGVVPWSREGRGVR----STIGCQLQDDALPRGMKVREAVRLFAAIYGSEDRAWW 113 G + V G S G +R +G Q L + E + L A+ G +R Sbjct: 69 GRVIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIPTLTALENILLPMALAGKANRLRG 128 Query: 114 EEVLSVCGLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLD-PHGRREVW 172 +E+L GLGG+E EELSGG + DE T LD G R V Sbjct: 129 QELLRRVGLGGKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVR 188 Query: 173 HLIRRVKEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELVEAYGGGYVIA 230 L+ G TVVLTTH A + DRV ++ GR+ + SP + A G G V A Sbjct: 189 ILLEEAHSRGKTVVLTTHDPRVAR-MADRVAVIEDGRLRGVYSPSRIAGATGFGEVEA 245 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 102 bits (253), Expect = 2e-23 Identities = 74/221 (33%), Positives = 102/221 (46%), Gaps = 5/221 (2%) Query: 9 VVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRVWGVVPW 68 V K R L GVSL V+ GE+ + G NGAGKTT L + GL + G RV GV PW Sbjct: 20 VAKSVKGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPW 79 Query: 69 SREGRGVRSTIGCQLQDDALPRGMKVREAVRLFAAIYGS--EDRAWWEEVLSVCGLGGRE 126 V+ +G +D ++ + E + +A +Y + E + GL RE Sbjct: 80 GGGFERVKGEVGYLPEDASVYERLTGMENILFYARLYSGWRDVEELVENAVFYSGLS-RE 138 Query: 127 DA--RWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRRVKEMGTT 184 D R S G V LDE TSG+DP + ++R + G Sbjct: 139 DLARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSREGRA 198 Query: 185 VVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELVEAYGG 225 +++TTH + AE + DRV ++H G VA G P LVE Y G Sbjct: 199 ILVTTHDLALAEEIADRVTIIHGGSTVASGPPYRLVEEYCG 239 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 90.1 bits (222), Expect = 6e-20 Identities = 68/215 (31%), Positives = 100/215 (46%), Gaps = 5/215 (2%) Query: 4 IEVRDVVKRYGER-EALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRV 62 + +R +VK Y + +AL V ++ GEV ++G NGAGKTTL+ + G +P G I V Sbjct: 13 VAMRGIVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYV 72 Query: 63 WG-VVPWSREGRGVRSTIGCQLQDDALPRGMKVREAVRLFAAIYG---SEDRAWWEEVLS 118 WG V W +R+ I Q L M V E + ++ + G SE R E Sbjct: 73 WGRKVSWRGPWDAIRNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRTLETAE 132 Query: 119 VCGLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRRV 178 GL +L G + LDE TS L P +++ +R + Sbjct: 133 RLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLRLL 192 Query: 179 KEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAM 213 K+MG +VV TH + E + DRV +L +GRV A+ Sbjct: 193 KDMGVSVVYITHKLGEVVRVADRVTVLRRGRVSAV 227 Score = 49.3 bits (116), Expect = 1e-07 Identities = 60/234 (25%), Positives = 91/234 (38%), Gaps = 37/234 (15%) Query: 3 VIEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLI-- 60 ++ VR V E + VSL V+EGE+ GI G G G+ L++ + GLRRP RG I Sbjct: 262 LLSVRGVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEV 321 Query: 61 ---RVWGVVPWSREGRG-VRSTIGCQLQDD-----------------ALPRGMKVREAVR 99 R+ G + + R G G + G L D L R ++ + R Sbjct: 322 QGRRIEGSLDFYRAGGGYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRRSRLEDLFR 381 Query: 100 LFAAIYGSEDRAWWEEVLSVCGLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDEL 159 + R+ W V GR LSGG + Sbjct: 382 RLVERFRLVARSPWTPV-------GR-------LSGGNQQKVIVGSEVLRGFKLLVAVNP 427 Query: 160 TSGLDPHGRREVWHLIRRVKEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAM 213 T GLD V +L+ + G ++L + ++E L DR+ ++ GRV + Sbjct: 428 TQGLDIATTSFVRNLLSELARQGAGILLVSTDLDEILELSDRIYVMSGGRVTGV 481 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 90.1 bits (222), Expect = 6e-20 Identities = 71/226 (31%), Positives = 99/226 (43%), Gaps = 7/226 (3%) Query: 3 VIEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRV 62 ++EVR +V Y + L GV + + GE I+GP+G+GK+TLL+ + L P+ G I Sbjct: 4 LLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVF 63 Query: 63 WGVVPWSREG---RGVRSTIGCQLQDDAL-PRGMKVREAVRLFAAIYGSEDRAWWEEVLS 118 GV G R VR IG Q +L P +R G R E + Sbjct: 64 RGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAEERAVK 123 Query: 119 VCGLGGREDARWEE---LSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLI 175 + G ED LSGG + LDE TS LDP R +V + Sbjct: 124 YLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEAL 183 Query: 176 RRVKEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELVE 221 RV +G +++ TH + A + DR+ + G V G P ELVE Sbjct: 184 FRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSELVE 229 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 90.1 bits (222), Expect = 6e-20 Identities = 76/237 (32%), Positives = 111/237 (46%), Gaps = 17/237 (7%) Query: 4 IEVR--DVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIR 61 +EVR +V YGE EAL GVS E + ++GP+G GKTT+L+ + GL +P RG + Sbjct: 4 VEVRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVF 63 Query: 62 VWGVVPWSREGRGV---RSTIGCQLQDDALPRGMKVREAVRL---FAAIYGSEDRAWWEE 115 GV + G+ R ++G QD AL M V + V G E R E Sbjct: 64 FGGV-----DYTGLPPERRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVEW 118 Query: 116 VLSVCGLGGRED---ARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVW 172 L GL + R LSGG + LDE S LD R+ + Sbjct: 119 ALETVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLL 178 Query: 173 HLIRRV-KEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELVEAYGGGYV 228 ++R+ +++G+T++ TH EA L D +V++ GR+V G+P E+ YV Sbjct: 179 AELKRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEVYTRPANVYV 235 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 87.4 bits (215), Expect = 4e-19 Identities = 78/236 (33%), Positives = 106/236 (44%), Gaps = 24/236 (10%) Query: 4 IEVRDVVKRYGERE-ALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRV 62 + + V RY L GVS + G + ++GPNG+GKTTLL + G+ +P RG + V Sbjct: 6 VRLEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEV 65 Query: 63 WGVVPWSREGRGVRSTIGCQLQDDALPRGMKVREAVRLFAAIYG-SEDRAW----WEEVL 117 G P GR VR +G + +K E L+ YG SE AW WEEVL Sbjct: 66 CGSPP----GR-VRRMLGYAPASPEVDPRLKAVEVALLYR--YGVSEGVAWGRRDWEEVL 118 Query: 118 SV---CGLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHL 174 + G+G RW ELS G LDE S LD R V + Sbjct: 119 AALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLV 178 Query: 175 IRRVKEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELV------EAYG 224 +R ++ T+V TTH A + D V++L +G + A G P +V E YG Sbjct: 179 LRSLRGR-ATIVYTTH-DPLAAMAADSVIMLREGLLHAQGPPEAVVTPETIEEVYG 232 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 86.7 bits (213), Expect = 7e-19 Identities = 67/230 (29%), Positives = 104/230 (45%), Gaps = 16/230 (6%) Query: 1 MVVIEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLI 60 M I + V KR+G AL VSL + +GE+ ++GP+G GKTT L + G P+ G + Sbjct: 1 MAGIRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRV 60 Query: 61 RVWG-----VVPWSREGRGVRSTIGC---QLQDDALPRGMKVREAVRLFAAIYGSEDRAW 112 + + P+ R V D + G+K+R+ R W Sbjct: 61 YIGSRDVTMLKPYERNTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIV----RRVRW 116 Query: 113 WEEVLSVCGLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREV- 171 E+L + L R +LSGG + +DE S LD H R ++ Sbjct: 117 AAELLEIDHLLDRYP---HQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMR 173 Query: 172 WHLIRRVKEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELVE 221 ++R K +G T+V TH EEA + RV ++++GRV +G+P E+ E Sbjct: 174 EEIVRLQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVYE 223 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 86.3 bits (212), Expect = 9e-19 Identities = 73/237 (30%), Positives = 105/237 (44%), Gaps = 28/237 (11%) Query: 8 DVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLI-----RV 62 ++ R+G AL VS+ V+ GE+ GI+GPNGAGKT+LL + G+ +P+RG + + Sbjct: 6 NITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDI 65 Query: 63 WGVVPWSREGRGVRSTIGCQLQDDALPRGMKVRE--AVRLFAAIYGS-EDRAWW------ 113 G+ P R G+ T Q L M V E VRL GS ++A W Sbjct: 66 TGLKPHQRITLGLSRT----FQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKR 121 Query: 114 ---------EEVLSVCGLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLD 164 E V+ + L + L G V +DE +GL Sbjct: 122 WEVEARERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLS 181 Query: 165 PHGRREVWHLIRRVKE-MGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELV 220 + ++ I E M TT+VL H ME +CDRVV++ G+V+ G P E V Sbjct: 182 KEEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHEAV 238 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 84.7 bits (208), Expect = 3e-18 Identities = 65/198 (32%), Positives = 90/198 (45%), Gaps = 4/198 (2%) Query: 11 KRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRVWGVVPWSR 70 KR+G+R A V G + G++GPNGAGKTTLL+ + GL +P G I V GV P S Sbjct: 12 KRFGQRYAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVEGVNPRSP 70 Query: 71 EGRGVRSTIGCQLQDDALPRGMKVREAVRLFAAIYGS---EDRAWWEEVLSVCGLGGRED 127 + IG + +P + A + G E R E L V GL G + Sbjct: 71 GFEKLLPRIGYVPELPVVPLWTTPCILLETLARLEGYTSVEARVRAREALEVVGLAGECE 130 Query: 128 ARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRRVKEMGTTVVL 187 +LS G + LDE SGLDP V L+R V G TV++ Sbjct: 131 TPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAREGATVIV 190 Query: 188 TTHYMEEAEVLCDRVVLL 205 ++H + E E + V++L Sbjct: 191 SSHILRELEDIATHVLVL 208 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 82.8 bits (203), Expect = 1e-17 Identities = 65/223 (29%), Positives = 105/223 (47%), Gaps = 6/223 (2%) Query: 1 MVVIEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLI 60 M +++ V K +G A+ V+L +++ E I+GP+G+GKTTLL + G+ +P RG I Sbjct: 1 MASVKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRI 60 Query: 61 RVWGVVPWSREGRGVRSTIGCQLQDDALPRGMKVREAVRLFAAIYGSEDRAWWEEVLSVC 120 V + IG Q+ AL M V E + + + A E+VLSV Sbjct: 61 YFNDVDVTDLPPN--KRNIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVA 118 Query: 121 ---GLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRR 177 G+ G D +LSGG + LDE S LD R ++ +++ Sbjct: 119 KLLGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKK 178 Query: 178 V-KEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGEL 219 + KE+G T + TH EA + DR+ ++ G + +G P ++ Sbjct: 179 LQKELGITAIYVTHDQSEALAMADRIAIIASGVIQQVGKPWDV 221 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 82.0 bits (201), Expect = 2e-17 Identities = 64/217 (29%), Positives = 97/217 (44%), Gaps = 13/217 (5%) Query: 18 ALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRVWG--VVPWS-REGRG 74 A+ GV L ++EGEV IVG +G GKTTL + + G+ P G I G + P R Sbjct: 37 AVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARDRR 96 Query: 75 VRSTIGCQLQ------DDALPRGMKVREAVRLFAAIYGSEDRAWWEEVLSVCGLGGREDA 128 +R + Q D +P G +V E + + G E R E+L GL + Sbjct: 97 LRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETVGLTPGREF 156 Query: 129 RW---EELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRRV-KEMGTT 184 W +LSGG + DE S +D R + LI + G T Sbjct: 157 YWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTGAT 216 Query: 185 VVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELVE 221 +VL TH + A + DR+ +++ G++V +G P ++E Sbjct: 217 IVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVIE 253 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 82.0 bits (201), Expect = 2e-17 Identities = 65/237 (27%), Positives = 106/237 (44%), Gaps = 34/237 (14%) Query: 1 MVVIEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLI 60 M + + +VKR+G+ AL G+ L +++GE ++GP+G GKTT L + GL RP+ G + Sbjct: 1 MAGVRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRV 60 Query: 61 -----RVWGVVPWSRE------------GRGVRSTIGCQLQDDALPRGMKVREAVRLFAA 103 V G+ P R V I L+ LPR VR Sbjct: 61 YFDGRDVTGLPPKDRNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRV------ 114 Query: 104 IYGSEDRAWWEEVLSVCGLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGL 163 W E+L + L R +LSGG + +DE S L Sbjct: 115 -------RWAAELLEIDHLLDRYP---HQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNL 164 Query: 164 DPHGRREVWHLIRRV-KEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGEL 219 D R ++ I+++ + +G T++ TH EA V+ DR+V+++ G + +G+P ++ Sbjct: 165 DAILRIKMRSEIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDV 221 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 80.9 bits (198), Expect = 4e-17 Identities = 68/250 (27%), Positives = 111/250 (44%), Gaps = 25/250 (10%) Query: 2 VVIEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLI- 60 +++ V D+ KR+G AL V+L ++ G+V ++GPNG+GKTTL+ + G +P+ G + Sbjct: 5 IILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVL 64 Query: 61 ----RVWGVVPWSREGRGVRSTI-------GCQLQDDALPRGMKVREAVRLFAAI----Y 105 + G+ P G+ T + ++ L E V L Sbjct: 65 FKGRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWL 124 Query: 106 GSEDRAWWE--EVLSVCGLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGL 163 G E RA E+L GL D R ELSGG + +DE +G+ Sbjct: 125 GFEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGV 184 Query: 164 DPHGRREVWHLIRRV-KEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGE---- 218 +P + I+ + +E G T ++ H + + DRV + G+V+A G P E Sbjct: 185 NPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEVLNN 244 Query: 219 --LVEAYGGG 226 ++E+Y GG Sbjct: 245 PVVLESYLGG 254 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 78.2 bits (191), Expect = 2e-16 Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 33/236 (13%) Query: 3 VIEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRV 62 ++EV+ + YGE +AL GVSL V +GE+ ++G NGAGKTT L + GL +P G I + Sbjct: 6 LLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSI-I 64 Query: 63 W------GVVPWSR---------EGRGVRSTIGCQLQDDALPRGMKVREAVRLFAAIYGS 107 W G+ + R EGRG+ PR + V E +R+ A+ + Sbjct: 65 WQGRDITGLPAFKRVEEGISHVPEGRGI------------FPR-LTVYENLRVAASTRRA 111 Query: 108 ED--RAWWEEVLSVCG-LGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLD 164 ++ + E+V ++ L R LSGG + +DE + GL Sbjct: 112 KEHFQDSLEQVYTIFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLA 171 Query: 165 PHGRREVWHLIRRVK-EMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGEL 219 P R+V +L R++ E+G T++L + + + DR ++ GR+V G+ EL Sbjct: 172 PKLARDVIYLASRLREELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDEL 227 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 75.1 bits (183), Expect = 2e-15 Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 10/227 (4%) Query: 1 MVVIEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLI 60 M I + VVKR+G+ A+ V L +++GE ++GP+G GKTT L + GL P+ G I Sbjct: 1 MAEIRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRI 60 Query: 61 RVWGVVPWSREGRGVRSTIGCQLQDDALPRGMKVREAV-------RLFAAIYGSEDRAWW 113 + G ++ + + Q+ AL M V + + R + + R Sbjct: 61 LIDGEDVTFKDPKD--RNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRV 118 Query: 114 EEVLSVCGLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWH 173 EV + + D + +LSGG +DE S LD R + Sbjct: 119 IEVAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRA 178 Query: 174 LIRRV-KEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGEL 219 ++++ K++ T V TH EA + DR+ ++++GRVV +G+P E+ Sbjct: 179 ELKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEV 225 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 73.2 bits (178), Expect = 8e-15 Identities = 70/239 (29%), Positives = 99/239 (41%), Gaps = 10/239 (4%) Query: 2 VVIEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIR 61 + +E DVV G AL GV+ G V ++G NGAGKTTLL+ + G+ +P +G I Sbjct: 5 LAVEDLDVVYPGGVH-ALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRIL 63 Query: 62 VWGV-VPWSREGRGVRSTIGCQLQDDALPRGMKVREAVRLFAAIYG-----SEDRAWWEE 115 V G + G +RS I Q+ + G+K E + + + G + R E Sbjct: 64 VDGYELRPKGPGDSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAE 123 Query: 116 VLSVCGLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLI 175 GL D E+ V LDE T+ L P + Sbjct: 124 ASEALGLNIDPDRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAA 183 Query: 176 RRVKEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELVEAYGG---GYVIAP 231 R+ G V+L TH + EA DR+V+L +G V G P E G V+AP Sbjct: 184 GRLAASGAAVLLVTHRIGEAMEHADRLVILRKGVKVYEGPPPSSTEEVAKLMFGEVLAP 242 Score = 41.6 bits (96), Expect = 2e-05 Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 18/179 (10%) Query: 24 LMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRVWGV-----VPWSREGRGVRST 78 L V++GEV G+ G G G+ L E + GLR+P +G I + GV P +R G+ Sbjct: 275 LEVRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRLGL-GV 333 Query: 79 IGCQLQDDALPRGMKVREAVRLFAAIYGSED---------RAWWEEVLSVCGLGGREDAR 129 I + AL G + A + +I+ + D EE++ G+ + Sbjct: 334 IPEERLGHALVPGESI--AFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGIKAVSPRQ 391 Query: 130 W-EELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRRVKEMGTTVVL 187 +ELSGG + +GLD G++ V ++R E G +V+ Sbjct: 392 MVDELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRMSSERGGVLVI 450 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 72.4 bits (176), Expect = 1e-14 Identities = 73/226 (32%), Positives = 107/226 (47%), Gaps = 13/226 (5%) Query: 3 VIEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLI-- 60 +I++ DV YG+ + L VSL + G + IVGPNGAGK+TLL+ M G +G + Sbjct: 5 IIKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLF 64 Query: 61 ---RVWGVVPWSREGRGVRSTIGCQLQDDALPRGMKVREAVRLFAAIYGSED--RAWWEE 115 V + P R G+ T QL++ + R + V E +RL A ED R EE Sbjct: 65 ENTDVTHMPPHDRAKIGM--TFIFQLEN--IFRELTVYENLRL-AGYDLPEDVFRDRLEE 119 Query: 116 VLSVC-GLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHL 174 V S+ L R + LSGG +DE T+GL P +EV Sbjct: 120 VFSMFPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSY 179 Query: 175 IRRVKEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELV 220 +R + + G TVVL ++ + + D+ VL+ GR+ G EL+ Sbjct: 180 VRILNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDGPAEELL 225 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 66.6 bits (161), Expect = 7e-13 Identities = 60/209 (28%), Positives = 86/209 (41%), Gaps = 10/209 (4%) Query: 3 VIEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRV 62 ++ + +V K G R L GVSL + GE + G NG+GKTTLL GL P RG + Sbjct: 4 LLRLENVWKMLGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRVS- 62 Query: 63 WGVVPWSREGRGVRSTIGCQLQDDALPRGMKVREAVRLFAAIYGSE--DRAWWEEVLSVC 120 WG RG R +G + + V E V F++++G D E + Sbjct: 63 WGC------PRGPRGCVGYVGHTPMVYGDLTVWENVEFFSSLHGGSLGDYPLAAEAWRLL 116 Query: 121 GLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRRVKE 180 GL +LS G + LDE +GLD + L+R Sbjct: 117 GLEKYGSHLASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLLRLALG 176 Query: 181 MGTTVVLTTHYMEEAEV-LCDRVVLLHQG 208 G +++TT +E + L RV L G Sbjct: 177 EGLALLMTTPLLEPRYLGLASRVYTLQDG 205 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 65.5 bits (158), Expect = 2e-12 Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 7/220 (3%) Query: 4 IEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRVW 63 + V D+ Y L+GV+L + + I+GPNGAGKTT L+ + GL +P RG + + Sbjct: 3 VRVEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLD 62 Query: 64 GVVPWSREGRGVRSTIGCQLQDDALPR--GMKVREAVRLFAAIYG-SEDRAWWEEVLSVC 120 G R V G Q+ + P+ M VRE V + G + R EVL Sbjct: 63 GFEATGRP-EMVGRYAGYVPQNPSAPKLSPMTVREFVETSLRLRGVTRARERAVEVLHTL 121 Query: 121 GLGGRE-DARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRRVK 179 G+ G ++R ELS G + +DE + +DP GR E+ +I + Sbjct: 122 GIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAGLA 181 Query: 180 EMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGEL 219 V++T+H D +V++++ ++A G P E+ Sbjct: 182 R-ERLVLMTSHDPSLLLGHTDIIVVINRD-LIASGPPEEV 219 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 65.1 bits (157), Expect = 2e-12 Identities = 66/251 (26%), Positives = 107/251 (42%), Gaps = 41/251 (16%) Query: 1 MVVIEVRDVVKRY----GEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPE 56 M V++++D+ Y G A+ GVSL V +GE IVG +G+GK+TL + L P Sbjct: 1 MAVLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPP 60 Query: 57 ----RGLIRVWGVVPWSREGRGVR---------------------STIGCQLQDDALPRG 91 G I GV S G +R T+G Q+ + L G Sbjct: 61 GRIVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHG 120 Query: 92 MKVREAVRLFAAIYGSEDRAWWEEVLSVCGL-GGREDARWEELSGGXXXXXXXXXXXXXX 150 + A GSE + + L + G+ R +LSGG Sbjct: 121 L----------ASSGSEAESMAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALE 170 Query: 151 XXXVFLDELTSGLDPHGRREVWHLIRRV-KEMGTTVVLTTHYMEEAEVLCDRVVLLHQGR 209 + DE T+ LD + ++ L++++ +E G TV+L TH + A DR+ +++ G Sbjct: 171 PKILIADEPTTALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGE 230 Query: 210 VVAMGSPGELV 220 +V +G ++V Sbjct: 231 LVEIGPAEDVV 241 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 64.3 bits (155), Expect = 4e-12 Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 21/215 (9%) Query: 19 LAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRVWGVVPWSREGRGVRST 78 + +SL V++G + ++GPNGAGKTTLL+ + G+ + ERG + + EG + + Sbjct: 21 IKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSI---QLEGEDITN- 76 Query: 79 IGCQLQDDALPRG-MKVREAVRLFAAIYGSED--------RAWWEEVLSVCGLGGREDAR 129 + D+ RG + V E R+F + E+ A +++ SV R R Sbjct: 77 ---REPDEIARRGVIYVMEGRRIFKELTTEENLVSVAYAAGASRDDIRSVLSYFPRLKER 133 Query: 130 WEE----LSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRRV-KEMGTT 184 E LSGG + LDE + GL P +++ I+ + +E G T Sbjct: 134 LGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHREEGLT 193 Query: 185 VVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGEL 219 ++L +A + D ++ GR+V GS EL Sbjct: 194 ILLAEQNARKALEISDYGYVIENGRIVLEGSAEEL 228 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 63.9 bits (154), Expect = 5e-12 Identities = 66/248 (26%), Positives = 102/248 (41%), Gaps = 47/248 (18%) Query: 11 KRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERG----------LI 60 K G +A+ GVSL +++GE+ G+VG +G+GKTTL + + GL RP G L Sbjct: 22 KVIGYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELE 81 Query: 61 RVWGVVPWSREGRGV----------------------------RSTIGCQLQD--DALPR 90 + + G V R + QD +L Sbjct: 82 EAVSIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNP 141 Query: 91 GMKVREAVRLFAAIYGSEDRAWWE-----EVLSVCGLGGREDARWE-ELSGGXXXXXXXX 144 MKV E + ++G E + EVL GLG R+ ELSGG Sbjct: 142 RMKVGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIA 201 Query: 145 XXXXXXXXXVFLDELTSGLDPHGRREVWHLIRRV-KEMGTTVVLTTHYMEEAEVLCDRVV 203 + LDE TS LD + ++ L+R + K+ G T +L TH + + VV Sbjct: 202 RALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVV 261 Query: 204 LLHQGRVV 211 +++ G+++ Sbjct: 262 VMYSGKIM 269 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 62.8 bits (151), Expect = 1e-11 Identities = 60/229 (26%), Positives = 96/229 (41%), Gaps = 31/229 (13%) Query: 15 EREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRVWGVVPW------ 68 ++ L G+S Q G V I+GP+G+GK+TL+ + L G RV G V W Sbjct: 17 DKHILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGA-RVEGEV-WINNMNV 74 Query: 69 -SREGRGVRSTIGCQLQDDALPRGMKVREAVRLFAAIYG--------SEDRAW------- 112 + +R G Q+ M + E V + ++G E W Sbjct: 75 MKEDPYNIRRYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEIVEWALKMAHL 134 Query: 113 WEEVLSVCGLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVW 172 W+EV R +LSGG + LDE T+ +DP ++ Sbjct: 135 WDEVKD------RLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIE 188 Query: 173 H-LIRRVKEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELV 220 ++ KE TV++ TH ++A + D+++ L++GRV+ G ELV Sbjct: 189 QSIVEYAKEEMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELV 237 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 58.5 bits (140), Expect = 2e-10 Identities = 60/244 (24%), Positives = 101/244 (41%), Gaps = 25/244 (10%) Query: 2 VVIEVRDVVKRYGERE----ALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPER 57 +V+ +RD+ Y R+ AL GV L V +GE+ IVG +G GK+TL + + P Sbjct: 4 IVLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARIL-PSN 62 Query: 58 GLIRVWGVVPWSREGRGV-------------RSTIGCQLQDD---ALPRGMKVREAVRLF 101 +I ++ G V R I + D AL KV++ V Sbjct: 63 AVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDH 122 Query: 102 AAIYGSEDRAWWEEVLSVCGLGGRE---DARWEELSGGXXXXXXXXXXXXXXXXXVFLDE 158 + +E+L + + ELSGG + DE Sbjct: 123 VSGEKRRVEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADE 182 Query: 159 LTSGLDPHGRREVWHLIRRVKE-MGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPG 217 T+ LD + ++ ++ R++E + TT++L TH + A + DR+ +++ G VV + Sbjct: 183 PTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVVEVADVF 242 Query: 218 ELVE 221 L E Sbjct: 243 SLFE 246 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 57.0 bits (136), Expect = 6e-10 Identities = 66/240 (27%), Positives = 103/240 (42%), Gaps = 42/240 (17%) Query: 4 IEVRDVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTL---------LECMEG--- 51 +EV+ + + GE+ L V ++ GEV ++GPNG+GK++L E +EG Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 52 --------LRRPERGLIRVWGV------VPWSREGRGVRSTIGCQL--QDDALPRGMKVR 95 L ER L ++ +P R + + + +L QD + P K+ Sbjct: 63 LDGESIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKIV 122 Query: 96 EAVRLFAAIYGSEDRAWWEEVLSVCGLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVF 155 + + +A G + EV G G E R E L V Sbjct: 123 KRMYEYATKLGLDREILNREVN--VGFSGGEKKRSELLQA-----------MIFDPKIVI 169 Query: 156 LDELTSGLDPHGRREVWHLIRRVKEMGTTVVLTTHYMEEAE-VLCDRVVLLHQGRVVAMG 214 LDE SGLD G + V I+++++ G V+L THY V DRV +L++G V+A G Sbjct: 170 LDEPDSGLDIDGLKIVAEFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGSVLARG 229 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 56.6 bits (135), Expect = 7e-10 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 17/215 (7%) Query: 17 EALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPE----RGLIRVWGVVPWSREG 72 +A+ GVS ++ GEV GI G +G+GK+TL + GL P G I + G+ S Sbjct: 23 KAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTSMSE 82 Query: 73 RGVRSTI-----------GCQLQDDALPRGMKVREAVRLFAAIYGSEDRAWWEEVLSVCG 121 +R + + G ++ E +++ + E R E+L G Sbjct: 83 AELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELLESVG 142 Query: 122 LGGREDARW-EELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRRVK- 179 L R+ ELSGG V DE T+ LD + ++ +L++++ Sbjct: 143 LHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLKKLAW 202 Query: 180 EMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMG 214 E +++L TH + L + V++++ G++ G Sbjct: 203 EKNLSIILITHDLSVIAELAETVMIMYGGKIAEYG 237 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 55.1 bits (131), Expect = 2e-09 Identities = 59/199 (29%), Positives = 82/199 (41%), Gaps = 21/199 (10%) Query: 16 REALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRVWGVVPWSREGRGV 75 R L V+L + G V I+G NG+GKTTLL+ L +P+RG + G Sbjct: 4 RGRLRDVTLSIPRG-VTAILGANGSGKTTLLKLAARLLKPDRGSV------------EGP 50 Query: 76 RSTIGCQLQDDALPRGMKVREAVRLFAAIYGSEDRAWWEEVLSVCGLGGREDARWEELSG 135 R +G LQ+ L G A G A ++L GL + LS Sbjct: 51 R-RVGAALQNPYL--GFLGPTVAEDLARTAGGRGEAL--KLLREAGLEYASERSPYTLSM 105 Query: 136 GXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRRVKEMGTTVVLTTHYMEEA 195 G V +DE TSGLD G+R + LI R +G V++ H ++ A Sbjct: 106 GEARILSVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLIAR---LGVPVLVAGHDIDFA 162 Query: 196 EVLCDRVVLLHQGRVVAMG 214 + V+L GRV G Sbjct: 163 AAVAGWAVILRDGRVRVSG 181 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 54.3 bits (129), Expect = 4e-09 Identities = 69/238 (28%), Positives = 92/238 (38%), Gaps = 33/238 (13%) Query: 1 MVVIEVRDVVKRY-GEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRP---- 55 M V+ +RDV RY G L GVSL G + + GP G GK+T+L GL Sbjct: 1 MSVVRLRDVWYRYPGGGWVLRGVSLEAPRG-ITLLAGPTGGGKSTILRVAAGLATRIYGG 59 Query: 56 -ERGLIRVWG---VVPWSRE----GRGVRSTIGCQLQDDALPRGMKVREAVRLFAAIYGS 107 RG + G +VP + R + + LP REAVRL A G Sbjct: 60 YLRGEVEARGKPVLVPQDYDLFILSLTPREELEYCYEASGLPPWEARREAVRL-AEELGI 118 Query: 108 EDRAWWEEVLSVCGLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHG 167 ED D R +LS G + +DE + DP G Sbjct: 119 EDLL---------------DRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLG 163 Query: 168 RREVWHLIRRVKEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELVEAYGG 225 + L+RR+ G VV+ H + V L++ GR +G PGE VE G Sbjct: 164 VESLIRLLRRLDVEG--VVVAEHRVHYLLPAASSVYLVYDGRAKQLG-PGEAVEVLAG 218 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 53.9 bits (128), Expect = 5e-09 Identities = 62/238 (26%), Positives = 100/238 (42%), Gaps = 33/238 (13%) Query: 17 EALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLI--RVWGVVPWSREGRG 74 +A+ GVS + GEV +VG +G GKTT + + L + G + + V E RG Sbjct: 48 KAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERRG 107 Query: 75 VRSTIGCQLQDDALPRGMKV---REAVRLFAAIYGSEDRAWW-----EEVLSVCGLGGRE 126 V+S + A+PR RE ++ YGS + + E+ L + +G Sbjct: 108 VKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNAR 167 Query: 127 D-----ARWEE-----------------LSGGXXXXXXXXXXXXXXXXXVFLDELTSGLD 164 + AR E LSGG V DE S LD Sbjct: 168 EREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSMLD 227 Query: 165 PHGRREVWHLIRRVKE-MGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELVE 221 R E+ L+ +E +GT+++ TH + A +CDR+ +++ G++V G ++E Sbjct: 228 VSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDARRIIE 285 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 52.0 bits (123), Expect = 2e-08 Identities = 60/222 (27%), Positives = 92/222 (41%), Gaps = 32/222 (14%) Query: 5 EVRDVVKRYG------EREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLR----- 53 E++DV++ +G ER L V++ V G V +VG +GAGKTTLL + G Sbjct: 436 ELQDVLRAFGAERRVVERYVLKDVNITVNPGSVAAVVGASGAGKTTLLRMILGKALGIGG 495 Query: 54 ---RPERGLIRVWGVVPWSREGRGVRSTIGCQLQDDALPRGMKVREAVRLFAAIYGSEDR 110 RP+ G++++ +T L L + A+ G Sbjct: 496 EGYRPDSGVVKI------------PTNTKAAALLPGELEPSFGGETLLEHVASKLGDPGA 543 Query: 111 AWWEEVLSVCGLGGR--EDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDP-HG 167 A EVLS GLG A + ELS G + +DE + LDP Sbjct: 544 A--VEVLSSVGLGDAIFFRASFGELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLTA 601 Query: 168 RREVWHLIRRVKEMGTTVVLTTHYMEEAEVL-CDRVVLLHQG 208 RR L + + G T++++T+ E + L D V+L+ G Sbjct: 602 RRIARKLGKLARSKGITLIVSTNRPEILDALQPDTVILVGYG 643 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 51.6 bits (122), Expect = 2e-08 Identities = 49/215 (22%), Positives = 93/215 (43%), Gaps = 10/215 (4%) Query: 17 EALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRVWGVVPWSREGRGV- 75 +A+ V++ + G+ G+VG +G+GKTT + L P G I G+ GRG+ Sbjct: 50 KAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGLK 109 Query: 76 ----RSTIGCQLQDDALPRGMKVREAVRLFAAIYGSEDRAWWEEVLSV---CGLGGREDA 128 R+ I Q +L + + ++G + E ++S+ GL Sbjct: 110 EFRRRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQVGLNETHLY 169 Query: 129 RW-EELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRRV-KEMGTTVV 186 R+ E SGG + LDE TS LD + ++ +L++ + ++ T + Sbjct: 170 RYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTYL 229 Query: 187 LTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELVE 221 +H + + D + +++ G++V G E+ E Sbjct: 230 FISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEVFE 264 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 47.0 bits (110), Expect = 6e-07 Identities = 58/208 (27%), Positives = 83/208 (39%), Gaps = 20/208 (9%) Query: 7 RDVVKRYGEREALAGVSLMVQEG-----EVCGIVGPNGAGKTTLLECMEGLRRPERGLIR 61 R +V G R AL G +L EG EV G+ GPNG GKTT + + G +P G Sbjct: 356 RRIVGWTGLRVALDGFTLTSGEGALYGGEVIGVAGPNGIGKTTFVRTLAGALKPVEG--- 412 Query: 62 VWGVVPWSREGRGVRSTIGCQLQDDALPRGM--KVREAVRLFAAIYGSEDRAWWE-EVLS 118 V P+ + R S + ++LP +V +A GS W E++ Sbjct: 413 --AVYPYVEDLR--VSYKPQYISPESLPDATVEQVLKAANPAILAPGS----WLNLELVK 464 Query: 119 VCGLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHLIRRV 178 L + R LSGG LDE ++ LD R V IRR+ Sbjct: 465 RMRLDKLLERRVRTLSGGELQKVAVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRI 524 Query: 179 KEMGTTVVLTT-HYMEEAEVLCDRVVLL 205 E L H + + + DR++L+ Sbjct: 525 VETREAAALVVEHDLMILDYVSDRIMLV 552 Score = 47.0 bits (110), Expect = 6e-07 Identities = 61/230 (26%), Positives = 88/230 (38%), Gaps = 26/230 (11%) Query: 8 DVVKRYGEREALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLIRVWGVVP 67 + V RYG + +EG+V G++G NG GKTT L + G +P G RV G P Sbjct: 85 EAVHRYGVNGFKLFRLPIPREGQVVGLLGRNGTGKTTALRILAGELKPNLG--RVEGGEP 142 Query: 68 -WSREGRGVR----STIGCQLQDDALPRGMKV--------REAVRLFAAIYGSEDRAWWE 114 W + R T +L D L K+ R R+ + +++R Sbjct: 143 EWDEILKRFRGSELQTYFRKLVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGVAL 202 Query: 115 EVLSVCGLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLDPHGRREVWHL 174 E+ GL D +LSGG DE +S LD R + L Sbjct: 203 ELAEQVGLDKVFDRDVRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARL 262 Query: 175 IRRVKEMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGELVEAYG 224 I G V++ H + + + D V +L+ G PG AYG Sbjct: 263 IAGAARPGAYVMVVEHDLAVLDYVSDLVHILY-------GEPG----AYG 301 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 40.8 bits (94), Expect = 4e-05 Identities = 54/236 (22%), Positives = 88/236 (37%), Gaps = 42/236 (17%) Query: 17 EALAGVSLMVQEGEVCGIVGPNGAGKTTLLECMEGLRRPERGLI------------RVWG 64 +A+ VS + GE +VG G GK+ + L P ++ RV Sbjct: 27 KAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGRIVEGKIYYYPEPGRRVDI 86 Query: 65 VVPWSREGRGVRS------------------TIGCQLQDDALPRGM--KVREAVRLFAAI 104 + +E R +R TIG Q+ + L G +RE VR + Sbjct: 87 MSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETMLAHGRVRSLREGVRRAVGV 146 Query: 105 YGSEDRAWWEEVLSVCGLGGREDARWEELSGGXXXXXXXXXXXXXXXXXVFLDELTSGLD 164 + + + R + ELSGG + DE T+ LD Sbjct: 147 L---------KTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLIADEPTTALD 197 Query: 165 PHGRREVWHLIRRVK-EMGTTVVLTTHYMEEAEVLCDRVVLLHQGRVVAMGSPGEL 219 + ++ L+ ++K E G T++L TH + CDRV +++ G +V EL Sbjct: 198 VTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEEAPVDEL 253 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 333,098 Number of Sequences: 1700 Number of extensions: 15302 Number of successful extensions: 172 Number of sequences better than 1.0e-04: 41 Number of HSP's better than 0.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 78 Number of HSP's gapped (non-prelim): 57 length of query: 303 length of database: 492,079 effective HSP length: 76 effective length of query: 227 effective length of database: 362,879 effective search space: 82373533 effective search space used: 82373533 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718019|ref|YP_003873551.1| hypothetical protein STHERM_c03050 [Spirochaeta thermophila DSM 6192] (243 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.145 0.471 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 206,753 Number of Sequences: 1700 Number of extensions: 8083 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 243 length of database: 492,079 effective HSP length: 74 effective length of query: 169 effective length of database: 366,279 effective search space: 61901151 effective search space used: 61901151 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718020|ref|YP_003873552.1| nitrogen regulation protein [Spirochaeta thermophila DSM 6192] (352 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 313,219 Number of Sequences: 1700 Number of extensions: 12570 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 352 length of database: 492,079 effective HSP length: 78 effective length of query: 274 effective length of database: 359,479 effective search space: 98497246 effective search space used: 98497246 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718021|ref|YP_003873553.1| two component, sigma-54 specific, transcriptional regulator, Fis family nitrogen assimilation [Spirochaeta thermophila DSM 6192] (441 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 458,725 Number of Sequences: 1700 Number of extensions: 21994 Number of successful extensions: 102 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102 Number of HSP's gapped (non-prelim): 0 length of query: 441 length of database: 492,079 effective HSP length: 80 effective length of query: 361 effective length of database: 356,079 effective search space: 128544519 effective search space used: 128544519 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718022|ref|YP_003873554.1| hypothetical protein STHERM_c03080 [Spirochaeta thermophila DSM 6192] (324 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 403,109 Number of Sequences: 1700 Number of extensions: 21288 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 324 length of database: 492,079 effective HSP length: 77 effective length of query: 247 effective length of database: 361,179 effective search space: 89211213 effective search space used: 89211213 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718023|ref|YP_003873555.1| hypothetical protein STHERM_c03090 [Spirochaeta thermophila DSM 6192] (657 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 571,574 Number of Sequences: 1700 Number of extensions: 23500 Number of successful extensions: 64 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 0 length of query: 657 length of database: 492,079 effective HSP length: 83 effective length of query: 574 effective length of database: 350,979 effective search space: 201461946 effective search space used: 201461946 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718024|ref|YP_003873556.1| DNA-helicase [Spirochaeta thermophila DSM 6192] (588 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601169|ref|NP_147698.1| DNA repair helicase [Aeropyrum pern... 147 7e-37 >gi|14601169|ref|NP_147698.1| DNA repair helicase [Aeropyrum pernix K1] Length = 539 Score = 147 bits (371), Expect = 7e-37 Identities = 139/449 (30%), Positives = 199/449 (44%), Gaps = 61/449 (13%) Query: 150 LARLLEPSTPDLP-PRDDALY-VPLIHRGTIKQLLIDLGYPVTDLVPLQEGEPLPLSLRT 207 L +LE LP R+ Y P I +++ G V D V LP +R Sbjct: 104 LKPILEEEGLSLPYDREARAYRAPPIMYPRLREAFERRGLKVEDRVFPPSSRSLPRPVRF 163 Query: 208 TTRSGRPFALRPYQEAAVKAFXXXXXXXXXXXXIVMPCGAGKTVVGLALMAHYRTSTLIL 267 T LR YQE A++A+ IV+P GAGKTVV +A +A +LI+ Sbjct: 164 TGE------LRDYQEEALEAWRKAGGRGV----IVLPTGAGKTVVAIAAVAWAGVWSLIV 213 Query: 268 TPNVAAAHQWIDEILDKTTLTEDQIAEYTGESKDIKPVTVATYHILTWRPDQTQEHYPHF 327 QWID + T + Y GE K + P+TV TY Q Y H Sbjct: 214 VYTRDHVRQWIDAFR-RFTDAHSLVGAYYGEEKRLAPITVTTY----------QTAYRHI 262 Query: 328 DLFLARNWGLIIYDEVHLLPAPVF-RITAELQAKRRCGLTATLVREDGKERHLFALVGPK 386 D LA + +++DE H +PA F RI + A R GL+AT+ REDG+ +++LVG Sbjct: 263 DR-LAPLFPFLVFDEAHHIPADKFKRIASASPAPYRMGLSATIEREDGRHEEVYSLVGGV 321 Query: 387 RHDIPWKEVEAQGWIAEALCYEIRIPLPEDLRLAY------------------IAADQR- 427 + E+ +G++A + +++ L E+ + Y I D R Sbjct: 322 VYSSSPGELTRKGYLAPFVIRRVKVELEEEEKRLYEDLKRKYRILARGRSFEKILEDARR 381 Query: 428 -------------KKHTIASTNPLKDRVVAVLL--ERHPDLPTLIIGQYLDQLERIARTL 472 + I + K R V L+ E ++ QY Q E IAR Sbjct: 382 GDPTAIEAIRVNTRMKEIVQLSESKIRAVEKLVREELSRGSKVIVFTQYRRQAEEIARRT 441 Query: 473 GLPLITGRTPNRERERLYREFKEGRITRLVVSRVANFSIDLPDAAVAIQVSGTFGSRQEE 532 G L+ G R RE +F+ + LVV+ V + +D+PDA V I VSGT GSR++ Sbjct: 442 GALLLHGGLERRVREATLAKFRALKAGALVVTTVGDEGLDIPDANVGILVSGT-GSRRQF 500 Query: 533 AQRLGRILRP-KHHHAYFYTIVTRDTLEE 560 QRLGR+LRP + A Y ++ R T EE Sbjct: 501 IQRLGRLLRPGEGKRAVLYEVIARGTGEE 529 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 553,788 Number of Sequences: 1700 Number of extensions: 23819 Number of successful extensions: 70 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63 Number of HSP's gapped (non-prelim): 3 length of query: 588 length of database: 492,079 effective HSP length: 82 effective length of query: 506 effective length of database: 352,679 effective search space: 178455574 effective search space used: 178455574 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718025|ref|YP_003873557.1| lipoyl synthase [Spirochaeta thermophila DSM 6192] (294 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431839|ref|NP_148555.2| lipoyl synthase [Aeropyrum pernix K1] 223 4e-60 gi|14600565|ref|NP_147082.1| hypothetical protein APE_0252 [Aero... 42 2e-05 >gi|118431839|ref|NP_148555.2| lipoyl synthase [Aeropyrum pernix K1] Length = 293 Score = 223 bits (568), Expect = 4e-60 Identities = 126/282 (44%), Positives = 172/282 (60%), Gaps = 9/282 (3%) Query: 3 ERRKPEWLKIELGLSPEHKKVRRELARHGLHTVCEEARCPNLHECWGRYRTATFLLLGEV 62 E KP ++ + ++ + KV R +A G+ TVCE A CPN+ CWG TATF+++G+ Sbjct: 2 EAAKP---RLRVRINDSYVKVARLVAGLGVATVCEGALCPNIFTCWGE-GTATFMIMGDT 57 Query: 63 CTRRCRFCAVGHGRPCPPDPEEPARVAQVVARLGIRHVVLTMVTRDDLPDGGAGHVAAAV 122 CTR CRFC V G P P DP EP +VA V LG+ +V LT V RDDLPDGGA H AA V Sbjct: 58 CTRGCRFCYVKKGVPEPLDPLEPYKVALAVDALGLDYVTLTSVDRDDLPDGGASHFAATV 117 Query: 123 REVRKASPGVRVEILTSDFRGDLAALETVLESRPEIMSHNVETVRRLTPRVRS-GASYER 181 R +++ P VE L DF+G + V S E+++HN+ETV RLTP VR A Y + Sbjct: 118 RAIKRLRPDTIVEALIPDFQGVEEHVRLVAASGLEVLAHNIETVERLTPLVRDRRAGYRQ 177 Query: 182 SLAFLREAGLRVRAYGGFLKSSFMVGLGETEEEVKETLRDLRAAGVQMVNIGQYLQPTKE 241 SL L A + G KSS ++GLGE + EV E +RDLR+ GV ++ + QY +P+++ Sbjct: 178 SLRVLEIA----KEEGVVTKSSILLGLGEDKSEVIEAMRDLRSVGVDILVLSQYYRPSRK 233 Query: 242 HLPVARYWSPEEFDRLRDYALSLGFIACSAGPKVRSSYHAEE 283 LPVA+ +S EF L + L +GF A P R+S+ A+E Sbjct: 234 QLPVAKRYSLSEFRELAEKGLRMGFAYVVAHPLARTSFKAKE 275 >gi|14600565|ref|NP_147082.1| hypothetical protein APE_0252 [Aeropyrum pernix K1] Length = 392 Score = 42.0 bits (97), Expect = 2e-05 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 17/108 (15%) Query: 49 GRYRTATFLLLGEVCTRRCRFC---------AVGHGRPCPPDPEEPARVAQVVA-RLGIR 98 G Y +L VC RC FC + G+ P PE RVA + RLG+R Sbjct: 63 GSYIVNIYLAYTNVCVTRCTFCDFYVPPERRSSGYTHP----PEHLGRVAGLARKRLGVR 118 Query: 99 HVVLTMVTRDDLPDGGAGHVAAAVREVRKASPGVRVEILTSDFRGDLA 146 V + +LP + A+RE+++ +PGV ++ T++ G +A Sbjct: 119 EVHMVGGNDPELP---LEYYEEAIREIKRVAPGVVLKAFTAEEIGFIA 163 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 322,103 Number of Sequences: 1700 Number of extensions: 14817 Number of successful extensions: 85 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 81 Number of HSP's gapped (non-prelim): 2 length of query: 294 length of database: 492,079 effective HSP length: 76 effective length of query: 218 effective length of database: 362,879 effective search space: 79107622 effective search space used: 79107622 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718026|ref|YP_003873558.1| NADH:ubiquinone oxidoreductase, Na translocating, B subunit [Spirochaeta thermophila DSM 6192] (311 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.143 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 300,309 Number of Sequences: 1700 Number of extensions: 12331 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 0 length of query: 311 length of database: 492,079 effective HSP length: 77 effective length of query: 234 effective length of database: 361,179 effective search space: 84515886 effective search space used: 84515886 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718027|ref|YP_003873559.1| hypothetical protein STHERM_c03130 [Spirochaeta thermophila DSM 6192] (222 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 229,023 Number of Sequences: 1700 Number of extensions: 10284 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 222 length of database: 492,079 effective HSP length: 73 effective length of query: 149 effective length of database: 367,979 effective search space: 54828871 effective search space used: 54828871 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718028|ref|YP_003873560.1| Na(+)-translocating NADH-quinone reductase subunit D [Spirochaeta thermophila DSM 6192] (200 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.142 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 174,477 Number of Sequences: 1700 Number of extensions: 6356 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 200 length of database: 492,079 effective HSP length: 72 effective length of query: 128 effective length of database: 369,679 effective search space: 47318912 effective search space used: 47318912 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718029|ref|YP_003873561.1| hypothetical protein STHERM_c03150 [Spirochaeta thermophila DSM 6192] (197 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.146 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 175,037 Number of Sequences: 1700 Number of extensions: 7203 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 197 length of database: 492,079 effective HSP length: 72 effective length of query: 125 effective length of database: 369,679 effective search space: 46209875 effective search space used: 46209875 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718030|ref|YP_003873562.1| Na(+)-translocating NADH-quinone reductase subunit F [Spirochaeta thermophila DSM 6192] (368 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 360,938 Number of Sequences: 1700 Number of extensions: 16050 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 368 length of database: 492,079 effective HSP length: 78 effective length of query: 290 effective length of database: 359,479 effective search space: 104248910 effective search space used: 104248910 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718031|ref|YP_003873563.1| hypothetical protein STHERM_c03170 [Spirochaeta thermophila DSM 6192] (150 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.141 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 158,922 Number of Sequences: 1700 Number of extensions: 6381 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 150 length of database: 492,079 effective HSP length: 69 effective length of query: 81 effective length of database: 374,779 effective search space: 30357099 effective search space used: 30357099 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718032|ref|YP_003873564.1| hepn domain-containing protein [Spirochaeta thermophila DSM 6192] (131 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431390|ref|NP_147836.2| hypothetical protein APE_1272.1 [A... 61 1e-11 gi|118431183|ref|NP_147472.2| hypothetical protein APE_0760.1 [A... 41 9e-06 >gi|118431390|ref|NP_147836.2| hypothetical protein APE_1272.1 [Aeropyrum pernix K1] Length = 139 Score = 60.8 bits (146), Expect = 1e-11 Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 1/128 (0%) Query: 4 AFDWFVQAKRDLEQAEDSRKAERHEWACFXXXXXXXXXXXXLHLYHHQEGWGHVVAKLLE 63 A W QAK LE + + WACF + E +GH + L Sbjct: 8 AVRWLRQAKHTLESIRVDYEGGFYSWACFKANQAAEYSIKAVLRAAGLESFGHDLMALWR 67 Query: 64 DLPPLCAVPEELIEKAKVLDNFYIPTRYPNGHPEG-APFEHYGPLQSEEAIRYARDILAF 122 LC +E+ E VL+ Y+P RYP+ P G APFE+Y +EEA+ A + Sbjct: 68 RARSLCQPLQEMEECIAVLNKLYLPPRYPDAWPGGAAPFENYTRRDAEEALECASRVYRA 127 Query: 123 VGKAMALE 130 V + + E Sbjct: 128 VEECLGEE 135 >gi|118431183|ref|NP_147472.2| hypothetical protein APE_0760.1 [Aeropyrum pernix K1] Length = 135 Score = 41.2 bits (95), Expect = 9e-06 Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 2/126 (1%) Query: 3 RAFDWFVQAKRDLEQAEDSRKAERHEWACFXXXXXXXXXXXXLHL-YHHQEGWGHVVAKL 61 +A+ W A+RDL +AE S K A F L L + H + +L Sbjct: 4 KAWLWLRAARRDLGRAEYSLKVGDRAAATFWSQQAAEKALKGLLLAFKGDYPKTHSIRRL 63 Query: 62 LEDLPPLCAVPEELIEKAKVLDNFYIPTRYPNGHPEGAPFEHYGPLQSEEAIRYARDILA 121 LEDL + E +E A L +Y +RYP+ E P E G +E A+ AR I+ Sbjct: 64 LEDLGLDLGLSEGELEDAFELTQYYYLSRYPD-VVEELPDEVIGRRSAERAVNAARRIVE 122 Query: 122 FVGKAM 127 +A+ Sbjct: 123 AAERAL 128 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 126,219 Number of Sequences: 1700 Number of extensions: 4931 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 2 length of query: 131 length of database: 492,079 effective HSP length: 68 effective length of query: 63 effective length of database: 376,479 effective search space: 23718177 effective search space used: 23718177 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718033|ref|YP_003873565.1| nucleotidyltransferase domain-containing protein [Spirochaeta thermophila DSM 6192] (128 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.128 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 121,071 Number of Sequences: 1700 Number of extensions: 3706 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 128 length of database: 492,079 effective HSP length: 67 effective length of query: 61 effective length of database: 378,179 effective search space: 23068919 effective search space used: 23068919 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718034|ref|YP_003873566.1| hypothetical protein STHERM_c03200 [Spirochaeta thermophila DSM 6192] (173 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.133 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 171,177 Number of Sequences: 1700 Number of extensions: 7245 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 173 length of database: 492,079 effective HSP length: 71 effective length of query: 102 effective length of database: 371,379 effective search space: 37880658 effective search space used: 37880658 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718035|ref|YP_003873567.1| apolipoprotein N-acyltransferase [Spirochaeta thermophila DSM 6192] (531 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 496,498 Number of Sequences: 1700 Number of extensions: 20837 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 531 length of database: 492,079 effective HSP length: 81 effective length of query: 450 effective length of database: 354,379 effective search space: 159470550 effective search space used: 159470550 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718036|ref|YP_003873568.1| sensory histidine kinase in two-component regulatory system with AtoC [Spirochaeta thermophila DSM 6192] (616 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 138 4e-34 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 102 2e-23 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 92 3e-20 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 83 2e-17 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 81 8e-17 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 80 1e-16 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 77 1e-15 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 76 3e-15 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 73 2e-14 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 72 4e-14 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 72 5e-14 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 71 7e-14 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 65 4e-12 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 64 1e-11 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 64 1e-11 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 63 2e-11 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 61 9e-11 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 60 1e-10 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 60 2e-10 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 59 3e-10 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 58 6e-10 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 58 6e-10 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 58 8e-10 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 56 2e-09 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 56 3e-09 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 55 7e-09 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 54 8e-09 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 51 9e-08 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 50 2e-07 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 50 2e-07 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 49 5e-07 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 46 3e-06 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 138 bits (347), Expect = 4e-34 Identities = 90/218 (41%), Positives = 126/218 (57%), Gaps = 5/218 (2%) Query: 22 LKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPSDAYRL 81 L VDF LR GE+HAL+GE+ GK+TLM +L GE + GEI GR++ + P DA R Sbjct: 29 LDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYVWGRKVSWRGPWDAIRN 88 Query: 82 GIAMVHQTPQVIPSLNAVENIFATRLPPFWSGLPQYYRYIRETRRLLALLGKEFDVLIPL 141 GIAMV+Q +++ S+ ENI A L G + R ET LG E D+ + Sbjct: 89 GIAMVYQQFRLVESMTVEENI-AIYLSSLGLGRSEARRRTLETAE---RLGLEIDLAKTV 144 Query: 142 KLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLFAILKDMTSKGKSIIYVTP 201 LP +Q V+I +ALS +LILDE ++ TP E E+LF+ L+ + G S++Y+T Sbjct: 145 ADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLRLLKDMGVSVVYITH 204 Query: 202 HIDEIFSIADRVTVLKNGYRQST-EDVHQISSLRLFRL 238 + E+ +ADRVTVL+ G + EDV + S L RL Sbjct: 205 KLGEVVRVADRVTVLRRGRVSAVIEDVGRTSEEELARL 242 Score = 48.5 bits (114), Expect = 5e-07 Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 25/213 (11%) Query: 20 EILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPSDAY 79 E ++ V E+R+GEI + G G+ L+ ++G +R +G I GRRI + D Y Sbjct: 276 ERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEVQGRRI--EGSLDFY 333 Query: 80 RLG-----------IAMVHQTPQVIPSL--NAVENIFATRLPPFWSGLPQYYRYIRETRR 126 R G +AM + + I L A + + R S L +R + E R Sbjct: 334 RAGGGYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRR-----SRLEDLFRRLVERFR 388 Query: 127 LLALLGKEFDVLIPLKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLFAIL 186 L+A P+ L +QQ V + + +L+ + + +L Sbjct: 389 LVAR-----SPWTPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTSFVRNLL 443 Query: 187 KDMTSKGKSIIYVTPHIDEIFSIADRVTVLKNG 219 ++ +G I+ V+ +DEI ++DR+ V+ G Sbjct: 444 SELARQGAGILLVSTDLDEILELSDRIYVMSGG 476 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 102 bits (255), Expect = 2e-23 Identities = 67/227 (29%), Positives = 115/227 (50%), Gaps = 17/227 (7%) Query: 15 HEGNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQD 74 + G LKGV G + AL+GE+ GK+TL+ ++G + +KG IL +G ++P+ Sbjct: 14 YPGGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPKG 73 Query: 75 PSDAYRLGIAMVHQTPQVIPSLNAVENIFATRLPPFWSGLPQYYRYIRETRRLLA----L 130 P D+ R GI M Q P V P + A E++ T + + +R+ R +LA Sbjct: 74 PGDSLRSGIYMASQNPPVYPGIKAYEDLAVTLM------VAGRKAGLRQARTMLAEASEA 127 Query: 131 LGKEFDVLIPLKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLFAILKDMT 190 LG D L + +++Q +++ +AL+ ++LDE + TPEE R+ + Sbjct: 128 LGLNIDPDRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLA 187 Query: 191 SKGKSIIYVTPHIDEIFSIADRVTVLKNGYR-------QSTEDVHQI 230 + G +++ VT I E ADR+ +L+ G + STE+V ++ Sbjct: 188 ASGAAVLLVTHRIGEAMEHADRLVILRKGVKVYEGPPPSSTEEVAKL 234 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 92.4 bits (228), Expect = 3e-20 Identities = 68/236 (28%), Positives = 122/236 (51%), Gaps = 4/236 (1%) Query: 5 IRLLMRTIHYHEGNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEIL 64 I L +R ++ G E LKGV F +R+GE L+G + GK+TL +++ G +G ++ Sbjct: 3 IILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVI 62 Query: 65 FNGRRIQPQDPSDAYRLGIAMVHQTPQVIPSLNAVENIFATRLPPFWSGLPQYYRYIRET 124 + G I R GIA Q + + +L + N+ L + + + E Sbjct: 63 YKGVDITGWPAYRRSRAGIARTFQIVRPLANLTVLNNVIVGALLR-TNDIREARERAMEA 121 Query: 125 RRLLALLGKEFDVLIPLKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLFA 184 ++ L GKE D+L K L +++ +++ARAL+ P++L+LDEI+ P E++ L Sbjct: 122 IDMVGLAGKE-DIL--AKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVY 178 Query: 185 ILKDMTSKGKSIIYVTPHIDEIFSIADRVTVLKNGYRQSTEDVHQISSLRLFRLAY 240 L +++ +G +II V + + + A+RV VL G + + +++S +L AY Sbjct: 179 TLLEISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVASNKLVIEAY 234 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 82.8 bits (203), Expect = 2e-17 Identities = 65/206 (31%), Positives = 99/206 (48%), Gaps = 12/206 (5%) Query: 17 GNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPS 76 G LKG+D E++ GE L+G CGK+T + ++ G +R G + F+GR + P Sbjct: 14 GKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFDGRDVTGLPPK 73 Query: 77 DAYRLGIAMVHQTPQVIPSLNAVENIFATRLPPFWSGLPQYYRYIRETRRLLALLGKEFD 136 D +AMV Q+ + P + +NI P LP+ +R R LL E D Sbjct: 74 DR---NVAMVFQSYALWPHMRVFDNI---AFPLKIKKLPR-DEIVRRVRWAAELL--EID 124 Query: 137 VLIPL--KLLPATDQQAVDIARALSYDPDILILDE-ISNRQTPEELERLFAILKDMTSKG 193 L+ L QQ V +ARA+ +P++L++DE +SN ++ I K G Sbjct: 125 HLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKLQRRLG 184 Query: 194 KSIIYVTPHIDEIFSIADRVTVLKNG 219 ++IYVT E I DR+ V+ G Sbjct: 185 VTMIYVTHDQVEAMVIGDRIVVMNFG 210 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 80.9 bits (198), Expect = 8e-17 Identities = 58/217 (26%), Positives = 103/217 (47%), Gaps = 7/217 (3%) Query: 5 IRLLMRTIHYHEGNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEIL 64 + + + +H G E L+GV F + I A++G CGK+T++ ++ G + ++G + Sbjct: 4 VEVRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVF 63 Query: 65 FNGRRIQPQDPSDAYRLGIAMVHQTPQVIPSLNAVENI-FATRLPPFWSGLPQYYRYIRE 123 F G P R + V Q + P + +N+ F R F G + R + Sbjct: 64 FGGVDYTGLPPE---RRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGG--EVRRQVEW 118 Query: 124 TRRLLALLGKEFDVLIPLKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLF 183 + L + + L QQ V +ARA++Y+P +L+LDE + + +RL Sbjct: 119 ALETVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLL 178 Query: 184 AILKDMTSK-GKSIIYVTPHIDEIFSIADRVTVLKNG 219 A LK + K G ++IYVT E +AD + ++++G Sbjct: 179 AELKRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDG 215 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 80.5 bits (197), Expect = 1e-16 Identities = 58/216 (26%), Positives = 106/216 (49%), Gaps = 14/216 (6%) Query: 17 GNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPS 76 G L V E+R+GEI ++G + GK++L++++ G + Q+G + F GR I P Sbjct: 12 GGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDITGLKPH 71 Query: 77 DAYRLGIAMVHQTPQVIPSLNAVENIFATRLPPFWSG--LPQYYRYIRETR--------- 125 LG++ Q ++ S+ +ENI RL P+ G L + R R Sbjct: 72 QRITLGLSRTFQHSELFHSMTVLENIM-VRLHPWTRGSILEKALWAFRAKRWEVEARERA 130 Query: 126 -RLLALLGKEFDVLIPLKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLF- 183 ++ LL P+ LP Q+ VD+A AL+ +P+++++DE + EE E + Sbjct: 131 EHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEKEDIVR 190 Query: 184 AILKDMTSKGKSIIYVTPHIDEIFSIADRVTVLKNG 219 AI++ + +++ + ++ + + DRV V+ G Sbjct: 191 AIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYG 226 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 77.0 bits (188), Expect = 1e-15 Identities = 57/211 (27%), Positives = 106/211 (50%), Gaps = 8/211 (3%) Query: 17 GNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEK--RLQKGEILFNGRRIQPQD 74 G + +L VDF+L+ GE+HA++G + GKS+L ++++G + + +G+IL +G I+ Sbjct: 13 GEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDILLDGESIKELP 72 Query: 75 PSDAYRLGIAMVHQTPQVIPSLNAVENIFA---TRLPPFWSGLPQYYRYIRETRRLLALL 131 P + GI M Q P IP + I A RL P + ++ L Sbjct: 73 PEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKIVKRMYEYATKL 132 Query: 132 GKEFDVLIPLKLL--PATDQQAVDIARALSYDPDILILDEISNRQTPEELERLFAILKDM 189 G + ++L + +++ ++ +A+ +DP I+ILDE + + L+ + +K + Sbjct: 133 GLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGLKIVAEFIKQL 192 Query: 190 TSKGKSIIYVTPHIDEI-FSIADRVTVLKNG 219 G+ ++ +T + + F DRVTVL G Sbjct: 193 RDSGRGVMLITHYARLLNFVEPDRVTVLYRG 223 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 75.9 bits (185), Expect = 3e-15 Identities = 60/202 (29%), Positives = 104/202 (51%), Gaps = 12/202 (5%) Query: 22 LKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPSDAYRL 81 L+ V + +GE+ A++G GK+TL++++ G R G ++ +G + + R Sbjct: 30 LREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGEELRRF 89 Query: 82 G---IAMVHQTPQVIPSLNAVENIFATRLPPFWSGLPQYYRYIRETRRLLALLGKEFDVL 138 + V Q +IP+L A+ENI LP +G R +E R + L GKE Sbjct: 90 RLERVGYVFQQHNLIPTLTALENIL---LPMALAGKANRLRG-QELLRRVGLGGKERRYP 145 Query: 139 IPLKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLFAIL-KDMTSKGKSII 197 + L +QQ + +A AL+ DP I++ DE + ER+ IL ++ S+GK+++ Sbjct: 146 ---EELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEAHSRGKTVV 202 Query: 198 YVTPHIDEIFSIADRVTVLKNG 219 +T H + +ADRV V+++G Sbjct: 203 -LTTHDPRVARMADRVAVIEDG 223 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 73.2 bits (178), Expect = 2e-14 Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 14/207 (6%) Query: 17 GNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPS 76 GN L V + GEI L+G CGK+T + ++ G + +G + R + P Sbjct: 14 GNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIGSRDVTMLKP- 72 Query: 77 DAYRLGIAMVHQTPQVIPSLNAVENI-FATRLPPFWSGLPQYYRYIRETRRLLALLGKEF 135 Y AMV Q + P + +NI + +L LP+ +R R LL E Sbjct: 73 --YERNTAMVFQNYALWPHMRVFDNIAYGLKL----RKLPR-SEIVRRVRWAAELL--EI 123 Query: 136 DVLIPL--KLLPATDQQAVDIARALSYDPDILILDE-ISNRQTPEELERLFAILKDMTSK 192 D L+ L QQ V +ARA+ +P++L++DE +SN L+ I++ Sbjct: 124 DHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQKRL 183 Query: 193 GKSIIYVTPHIDEIFSIADRVTVLKNG 219 G +I+YVT +E SI+ RV V+ G Sbjct: 184 GVTIVYVTHDQEEALSISHRVAVMNRG 210 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 72.0 bits (175), Expect = 4e-14 Identities = 70/251 (27%), Positives = 111/251 (44%), Gaps = 20/251 (7%) Query: 17 GNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPS 76 GN ++ V+ + E +++G GK+TL++L+ G + +G I FN + P+ Sbjct: 14 GNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFNDVDVTDLPPN 73 Query: 77 DAYRLGIAMVHQTPQVIPSLNAVENI-FATRLPPFWSGLPQYYRYIRETRRLLALLGKEF 135 + I +V Q + P + ENI F RL F G P + +LL + G Sbjct: 74 ---KRNIGLVFQNYALYPHMTVYENIAFPLRLRNF--GEPAIKEKVLSVAKLLGIEGL-- 126 Query: 136 DVLIPLKLLPAT----DQQAVDIARALSYDPDILILDE-ISNRQTPEELERLFAILKDMT 190 L PA QQ V +ARAL +P++L+LDE +SN ++ + K Sbjct: 127 -----LDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQK 181 Query: 191 SKGKSIIYVTPHIDEIFSIADRVTVLKNGYRQSTEDVHQISSLRLFRLAYSLISEIEPDE 250 G + IYVT E ++ADR+ ++ +G Q + S I P Sbjct: 182 ELGITAIYVTHDQSEALAMADRIAIIASGVIQQVGKPWDVYYKPRNVFVASFIG--TPPA 239 Query: 251 SAISHPLISSR 261 + +S PL SSR Sbjct: 240 NLVSVPLDSSR 250 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 71.6 bits (174), Expect = 5e-14 Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 14/201 (6%) Query: 25 VDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPSDAYRLGIA 84 VD ++ GE L+G CGK+T + L+ G + +G IL +G + +DP D +A Sbjct: 22 VDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILIDGEDVTFKDPKDR---NVA 78 Query: 85 MVHQTPQVIPSLNAVENI-FATRLPPFWSGLPQ--YYRYIRETRRLLALLGKEFDVLIPL 141 MV Q + P ++ +NI F L GL + R + E +LL + + L+ Sbjct: 79 MVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIEVAKLLRI-----EDLLDR 133 Query: 142 K--LLPATDQQAVDIARALSYDPDILILDE-ISNRQTPEELERLFAILKDMTSKGKSIIY 198 K L QQ V +ARAL P + ++DE +SN L + K + +Y Sbjct: 134 KPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELKKLQKDLKITTVY 193 Query: 199 VTPHIDEIFSIADRVTVLKNG 219 VT E S+ADR+ V+ G Sbjct: 194 VTHDQAEAMSMADRIAVMNKG 214 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 71.2 bits (173), Expect = 7e-14 Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 7/204 (3%) Query: 19 QEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPSDA 78 +++LKGVD L GE ++G GKSTL+ + G I+F G + S Sbjct: 17 EKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVFRGVDVTRLSGSQL 76 Query: 79 --YRLGIAMVHQTPQVIPSLNAVENIFATRLPPFWSGLPQYYRYIRETR-RLLALLGKEF 135 R I + Q+ + P + + NI P L R E + L++LG E Sbjct: 77 RMVRRKIGYLPQSYSLFPHMTVLRNITY----PLEKALGLSRRDAEERAVKYLSMLGIED 132 Query: 136 DVLIPLKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLFAILKDMTSKGKS 195 L QQ +ARAL+ +PDIL+LDE ++ PE + L + + GK+ Sbjct: 133 LAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEALFRVATLGKA 192 Query: 196 IIYVTPHIDEIFSIADRVTVLKNG 219 +I VT D +ADR+ +++G Sbjct: 193 MIVVTHEADFAVKVADRMAFMEDG 216 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 65.5 bits (158), Expect = 4e-12 Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 27/214 (12%) Query: 17 GNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPS 76 G + L V E+ +G I +VG + GKSTL+ + G + KG +LF + P Sbjct: 16 GKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLFENTDVTHMPPH 75 Query: 77 DAYRLGIAMVHQTPQVIPSLNAVEN-----------IFATRLPPFWSGLPQYYRYIRETR 125 D ++G+ + Q + L EN +F RL +S P Sbjct: 76 DRAKIGMTFIFQLENIFRELTVYENLRLAGYDLPEDVFRDRLEEVFSMFP---------- 125 Query: 126 RLLALLGKEFDVLIPLKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLFAI 185 RL LG++ L ++Q + +A + P + ++DE + +P+ + + + Sbjct: 126 RLKERLGQKAGT------LSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSY 179 Query: 186 LKDMTSKGKSIIYVTPHIDEIFSIADRVTVLKNG 219 ++ + +G +++ V ++ I D+ ++ NG Sbjct: 180 VRILNKEGYTVVLVEQNVKASLEIGDKGVLVVNG 213 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 63.9 bits (154), Expect = 1e-11 Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 11/221 (4%) Query: 7 LLMRTIHYHEGNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFN 66 LL R + + + GVD +R+GE+ A+VGE CGK+TL +VG + G I + Sbjct: 23 LLKRILGRPDAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYR 82 Query: 67 GRRIQPQDPSDAYRL--GIAMVHQTP-QVIPSLNAVENIFATRLPPFWSGLPQYYRYIRE 123 G + P + RL + MV Q P + + L V + A P GL + R Sbjct: 83 GELLTPHRLARDRRLRRKLQMVFQDPYKSLDPLMPVGDQVAE--PLVIHGLARGEEARRR 140 Query: 124 TRRLLALL----GKEFDVLIPLKLLPATDQQAVDIARALSYDPDILILDE-ISNRQTPEE 178 +L + G+EF P + L +Q V IAR L +P++++ DE +S Sbjct: 141 AVEMLETVGLTPGREFYWRKPHQ-LSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMR 199 Query: 179 LERLFAILKDMTSKGKSIIYVTPHIDEIFSIADRVTVLKNG 219 L I+ G +I+ +T I ++ADR+ V+ G Sbjct: 200 ASILDLIMDYHRRTGATIVLITHDIAVARAVADRIAVMYLG 240 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 63.5 bits (153), Expect = 1e-11 Identities = 53/235 (22%), Positives = 101/235 (42%), Gaps = 21/235 (8%) Query: 1 MEDEIRLLMRTIHYHEGNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQK 60 M +I L + + G L V+ E+ +G++ L+G + GK+TL++++ G + Sbjct: 1 MAGDIILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDG 60 Query: 61 GEILFNGRRIQPQDPSDAYRLGIAMVHQTPQVIPSLNAVENIFATRLPP----------- 109 G +LF GR I P + +LG+ Q P+ +L +EN+ P Sbjct: 61 GRVLFKGRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLAR 120 Query: 110 -FWSGLPQYYRYIRETRRLLALLGKEFDVLIPLKLLPATDQQAVDIARALSYDPDILILD 168 W G + R +L +G + L + ++IARA+ +++I+D Sbjct: 121 RLWLGFEK--RAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMD 178 Query: 169 E----ISNRQTPEELERLFAILKDMTSKGKSIIYVTPHIDEIFSIADRVTVLKNG 219 E ++ R +ER+ + ++ KG + + + I + DRV + G Sbjct: 179 EPAAGVNPRLAGSIMERIKYLARE---KGITFLIIEHRIGLVKEYVDRVYAMSMG 230 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 63.2 bits (152), Expect = 2e-11 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 23/210 (10%) Query: 21 ILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVG-----EKRLQKGEILFNGRRIQPQDP 75 ++K + + KG I L+G + GK+TL+ + G R+ +G I G I ++P Sbjct: 20 VIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNREP 79 Query: 76 SDAYRLGIAMVHQTPQVIPSLNAVENIFATRLPPFWS-----GLPQYYRYIRETRRLLAL 130 + R G+ V + ++ L EN+ + S + Y+ ++E RL Sbjct: 80 DEIARRGVIYVMEGRRIFKELTTEENLVSVAYAAGASRDDIRSVLSYFPRLKE--RLGEK 137 Query: 131 LGKEFDVLIPLKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLFAILKDM- 189 G L +QQ + IA AL Y P +L+LDE S P+ +++A +K + Sbjct: 138 AGN----------LSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLH 187 Query: 190 TSKGKSIIYVTPHIDEIFSIADRVTVLKNG 219 +G +I+ + + I+D V++NG Sbjct: 188 REEGLTILLAEQNARKALEISDYGYVIENG 217 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 60.8 bits (146), Expect = 9e-11 Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 21/228 (9%) Query: 1 MEDEIRLLMRTIHYHEGNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQK 60 M E L +++I + G + L GV + KGEI AL+G + GK+T + + G + + Sbjct: 1 MMAEPLLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRN 60 Query: 61 GEILFNGRRIQPQDPSDAYRLGIAMVHQTPQVIPSLNAVENI---FATRLPP--FWSGLP 115 G I++ GR I GI+ V + + P L EN+ +TR F L Sbjct: 61 GSIIWQGRDITGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRVAASTRRAKEHFQDSLE 120 Query: 116 QYYR---YIRETRRLLALLGKEFDVLIPLKLLPATDQQAVDIARALSYDPDILILDEISN 172 Q Y ++ R LA L +QQ + IARAL P +L++DE S Sbjct: 121 QVYTIFPILKARRSQLA------------GTLSGGEQQMLAIARALIQRPILLMMDEPSL 168 Query: 173 RQTPEELERLFAILKDMTSK-GKSIIYVTPHIDEIFSIADRVTVLKNG 219 P+ + + + + G +I+ V ++ +ADR V++ G Sbjct: 169 GLAPKLARDVIYLASRLREELGVTILLVEQNVGLSLKVADRGYVMETG 216 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 60.5 bits (145), Expect = 1e-10 Identities = 66/233 (28%), Positives = 104/233 (44%), Gaps = 16/233 (6%) Query: 19 QEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPSDA 78 Q +L VD E+ +GE LVG + GK+TL+ + +G R G +L NG + P A Sbjct: 17 QPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLLNG--LDPWREPRA 74 Query: 79 YRLGIAMVHQTPQVIPSLNAVENIFATRLPPFWSGLPQYYRYIRETRRLLALLGKEFDVL 138 R G+ +V + P + S+ VE F P + R L G E+ Sbjct: 75 -REGVGVVFERPNLPSSMPVVE--FLESAAAIIGSSPSRVDW---AIRAAGLEGHEWKT- 127 Query: 139 IPLKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLFAILKDMTSK-GKSII 197 L A +Q IA AL +P L+ DE ++ P E + +L + + G S++ Sbjct: 128 --FPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLNREHGLSLL 185 Query: 198 YVTPHIDEIFSIADRVTVLKNG---YRQSTEDVHQISSLRLFRLAY-SLISEI 246 + I E+ +A R+ VL G S ED+ + + L R + SL +E+ Sbjct: 186 VSSHVIVELLRVATRIYVLAGGRLAAEGSPEDLFRRAGLARLRTSNPSLAAEL 238 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 59.7 bits (143), Expect = 2e-10 Identities = 50/219 (22%), Positives = 99/219 (45%), Gaps = 20/219 (9%) Query: 17 GNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPS 76 G+ E L+GV F + GE+ +G + GK+T + +L+G R G G Sbjct: 15 GSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARVFG--------V 66 Query: 77 DAYRLGIAMVHQTPQVIP-SLNAVENIFATRLPPFWSGLPQYYRYIRETRRLLALLGKEF 135 + Y G + V + +P + R+ +W L +R ++ L + F Sbjct: 67 ELYNPGASGVRRRVGYVPGEFEFYGGVSGGRMLDYWCRLVGGC-----SRGVVRELLEAF 121 Query: 136 DVLIPLKLLPAT----DQQAVDIARALSYDPDILILDEISNRQTPEELERLFAILKDMTS 191 +PL+ T +Q + + A S++PD++++DE + P R+ ++ Sbjct: 122 P--LPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDFVRSKAR 179 Query: 192 KGKSIIYVTPHIDEIFSIADRVTVLKNGYRQSTEDVHQI 230 +G ++ + + + E+ +ADRV +L++G + EDV + Sbjct: 180 EGVTVFFSSHVLSEVQRVADRVGLLRSGVLVALEDVSSL 218 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 59.3 bits (142), Expect = 3e-10 Identities = 53/203 (26%), Positives = 96/203 (47%), Gaps = 6/203 (2%) Query: 17 GNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPS 76 G + + GV F + GE ++G + GK+TL+ ++ G R G + G + Sbjct: 15 GGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVCGYDVWGDGWR 74 Query: 77 DAYRLGIAMVHQTPQVIPSLNAVENIFATRLPPFWSGLPQYYRYIRETRRLLALLGKEFD 136 +A L I Q P + + E + T + P R RE RR+L +LG E Sbjct: 75 EARGL-IGFAPQDPPMARRMTGAE--YITVVGGLLGLSPGVAR--REARRVLEMLGFEDV 129 Query: 137 VLIPLKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLFAILKDMTSKGKSI 196 + + L ++A+ IA AL+ +P++++LDE + E L+A L+ KG+++ Sbjct: 130 LGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASLR-KAFKGRTV 188 Query: 197 IYVTPHIDEIFSIADRVTVLKNG 219 ++ + E + +DRV ++ G Sbjct: 189 LFSSHDPQEAEAESDRVLIMHRG 211 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 58.2 bits (139), Expect = 6e-10 Identities = 54/208 (25%), Positives = 92/208 (44%), Gaps = 23/208 (11%) Query: 21 ILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDP----S 76 +L+GV ++ GEIH L G + GK+T + +LVG GE R+ DP Sbjct: 29 VLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEA-----RVLGVDPWGGGF 83 Query: 77 DAYRLGIAMVHQTPQVIPSLNAVENI-FATRLPPFWSGLPQYYR----YIRETRRLLALL 131 + + + + + V L +ENI F RL W + + Y +R LA Sbjct: 84 ERVKGEVGYLPEDASVYERLTGMENILFYARLYSGWRDVEELVENAVFYSGLSREDLARR 143 Query: 132 GKEFDVLIPLKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLFAILKDMTS 191 + + +LL + L P +++LDE ++ P R+ IL+ ++ Sbjct: 144 AGGYSKGMKRRLL---------LGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSR 194 Query: 192 KGKSIIYVTPHIDEIFSIADRVTVLKNG 219 +G++I+ T + IADRVT++ G Sbjct: 195 EGRAILVTTHDLALAEEIADRVTIIHGG 222 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 58.2 bits (139), Expect = 6e-10 Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 17/214 (7%) Query: 18 NQEILKGVDFELRKGEIHALVGEHRCGKSTLMHL------LVGEKRLQKGEILFNGRRIQ 71 ++ ILKG+ F+ + G + A++G GKSTL+ + L+ R++ GE+ N + Sbjct: 17 DKHILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVE-GEVWINNMNVM 75 Query: 72 PQDPSDAYRLGIAMVHQTPQVIPSLNAVENIFATRLPPFWSGLPQYYRYIRETRRLLALL 131 +DP + R MV Q P P + EN+ + P GL + + + E + Sbjct: 76 KEDPYNIRRY-TGMVFQEPNPFPHMTIYENV---AIGPKLHGLAKNKKELDEIVEWALKM 131 Query: 132 GKEFDVLIPL-----KLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERL-FAI 185 +D + L +Q + +ARAL+ P +L+LDE + P ++ +I Sbjct: 132 AHLWDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSI 191 Query: 186 LKDMTSKGKSIIYVTPHIDEIFSIADRVTVLKNG 219 ++ + ++I VT + I+D++ L G Sbjct: 192 VEYAKEEMATVIIVTHTPQQAARISDQILFLYEG 225 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 57.8 bits (138), Expect = 8e-10 Identities = 59/258 (22%), Positives = 120/258 (46%), Gaps = 26/258 (10%) Query: 22 LKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPSDAYRL 81 L GVD ++ +G + +L+G + GK+TL+ +L G G + + + R+ Sbjct: 29 LDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANNVRSRI 88 Query: 82 GIAMVHQTPQVIPSLNAVENI-FATRLPPFWSGLPQYYRYIRETRRLLALLGKEFDVLIP 140 G+ + + + L+ +N+ F ++L G+P R + LL ++G E + Sbjct: 89 GVVLGGER-ALYWRLSGWDNLWFFSQL----YGIPP-REAKRRVKELLEIVGLEEWAHVR 142 Query: 141 LKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLFAILKDMTSKGKSIIYVT 200 ++ +Q + IAR L DP++L+LDE + P+ + +I++ + +G++++ T Sbjct: 143 VENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVLLTT 202 Query: 201 PHIDEIFSIADRVTVLKNG---YRQSTEDVHQI----------------SSLRLFRLAYS 241 ++ E ++DRV ++ G ED+ + S+ L RL Sbjct: 203 HYMVEAEELSDRVAIISKGRIVAEGPPEDLKSLVGGESVIELKVMGGDRVSMLLERLGGR 262 Query: 242 LISEIEPDESAISHPLIS 259 +IS +E D + + L+S Sbjct: 263 VISVVERDGARVFRVLVS 280 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 56.2 bits (134), Expect = 2e-09 Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 6/219 (2%) Query: 1 MEDEIRLLMRTIHYHEGNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQK 60 ME E ++ + G + GV F + +GE+ +L+G + GK+T + +L R Sbjct: 1 MESEAMVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTS 60 Query: 61 GEILFNGRRIQPQDPSDAYRLGIAMVHQTPQVIPSLNAVENIFATRLPPFWSGLPQYYRY 120 GE G I ++P + R+ I +V Q ++ +N++ + GLP Sbjct: 61 GEAWIAGYSI-VREPGNVRRV-IGLVPQDLTADDEMSGWDNVY---IQARLYGLPSSEAR 115 Query: 121 IRETRRLLALLGKEFDVLIPLKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELE 180 R TR +L L + ++ ++IA +L + P +L LDE + Sbjct: 116 ER-TREVLDYLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRR 174 Query: 181 RLFAILKDMTSKGKSIIYVTPHIDEIFSIADRVTVLKNG 219 L+ ++D+ +I+ T +++E ++DRV ++ G Sbjct: 175 SLWRYIEDLKRSAVTILLTTHYMEEAEMLSDRVAIIDRG 213 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 55.8 bits (133), Expect = 3e-09 Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 13/205 (6%) Query: 20 EILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPSDAY 79 E LKGV F + +GEI++ +G + GK+T + +L GE G + + Sbjct: 26 EALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAGFDVVKERWEVRK 85 Query: 80 RLGIAMVHQTPQVIPSLNAVENIFAT-RLPPFWSGLPQ--YYRYIRETRRLLAL--LGKE 134 R+G+ M+ L EN++ R+ G+PQ I+E L+ L LG Sbjct: 86 RIGV-MLSVERGFYWKLTGRENLYYFGRI----YGIPQGELKSRIKEVLDLVGLTDLGGA 140 Query: 135 FDVLIPLKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLFAILKDMTSKGK 194 P + + + + +AR L DP++LILDE + P + +++ + S+G+ Sbjct: 141 DK---PFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSLASEGR 197 Query: 195 SIIYVTPHIDEIFSIADRVTVLKNG 219 +I T ++ E I+DRV ++ G Sbjct: 198 TIFITTHNMVEAEMISDRVGIIIGG 222 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 54.7 bits (130), Expect = 7e-09 Identities = 70/275 (25%), Positives = 117/275 (42%), Gaps = 51/275 (18%) Query: 17 GNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKR---------LQKGEI---- 63 G + + GV L+KGEI +VGE GK+TL ++G R + KGE+ Sbjct: 25 GYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELEEAV 84 Query: 64 -----LFNGRRIQPQD---------PSDAY----------RLGIAMVHQTP--QVIPSLN 97 L G +Q +D D Y R + MV Q P + P + Sbjct: 85 SIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMK 144 Query: 98 AVENIFATRLPPFWSGLPQYYRYIRETRRLLALL-----GKEFDVLIPLKLLPATDQQAV 152 E I P G+ + ++ RR++ +L GKEF P +L +Q V Sbjct: 145 VGEIIGE---PVRVHGIEKSSEGVK--RRVIEVLEAVGLGKEFADRYPYEL-SGGQRQRV 198 Query: 153 DIARALSYDPDILILDEISNRQTPEELERLFAILKDMTSK-GKSIIYVTPHIDEIFSIAD 211 IARAL+ +P IL+LDE ++ ++ +L+++ K G + + +T I + ++ Sbjct: 199 AIARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSS 258 Query: 212 RVTVLKNGYRQSTEDVHQISSLRLFRLAYSLISEI 246 V V+ +G + H + + L L+S + Sbjct: 259 SVVVMYSGKIMESAPKHILFTNPLHPYTKLLLSAV 293 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 54.3 bits (129), Expect = 8e-09 Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 17/203 (8%) Query: 21 ILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPSDAYR 80 +L+GV F L G + AL+G + GK+TL+ LL G + +G + G P R Sbjct: 21 VLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEVCG------SPPGRVR 74 Query: 81 LGIAMVHQTPQVIPSLNAVENIFATRLPPFWSGLPQYYRY-IRETRRLLALLGKEFDVLI 139 + +P+V P L AVE R G+ + + R+ +LA LG+ + Sbjct: 75 RMLGYAPASPEVDPRLKAVEVALLYRY-----GVSEGVAWGRRDWEEVLAALGEMGVGEL 129 Query: 140 PLKL---LPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLFAILKDMTSKGKSI 196 + L + ++ V +A L+ P + +LDE + + R+ +L+ + +G++ Sbjct: 130 AWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRSL--RGRAT 187 Query: 197 IYVTPHIDEIFSIADRVTVLKNG 219 I T H AD V +L+ G Sbjct: 188 IVYTTHDPLAAMAADSVIMLREG 210 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 50.8 bits (120), Expect = 9e-08 Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 16/205 (7%) Query: 17 GNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPS 76 G + +L+GV L GE + G + GK+TL+ L G +G + + P+ P Sbjct: 15 GGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRVSWG----CPRGP- 69 Query: 77 DAYRLGIAMVHQTPQVIPSLNAVENI-FATRLPPFWSGLPQYYRYIRETRRLLALLGKEF 135 R + V TP V L EN+ F + L G Y E RLL L +++ Sbjct: 70 ---RGCVGYVGHTPMVYGDLTVWENVEFFSSL---HGGSLGDYPLAAEAWRLLGL--EKY 121 Query: 136 DVLIPLKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLFAILKDMTSKGKS 195 + +L ++ +D+ RAL +P +L+LDE E L +L+ +G + Sbjct: 122 GSHLASQLSFGW-RRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLLRLALGEGLA 180 Query: 196 IIYVTPHID-EIFSIADRVTVLKNG 219 ++ TP ++ +A RV L++G Sbjct: 181 LLMTTPLLEPRYLGLASRVYTLQDG 205 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 50.1 bits (118), Expect = 2e-07 Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 12/204 (5%) Query: 17 GNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPS 76 G + + V+F G I ++G + GK+TL+ ++G + GEIL G + P+ P Sbjct: 15 GQRYAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVEG--VNPRSPG 71 Query: 77 DAYRLG-IAMVHQTPQVIPSLNAVENIFAT--RLPPFWSGLPQYYRYIRETRRLLALLGK 133 L I V + P V+P + T RL + S + R L ++G Sbjct: 72 FEKLLPRIGYVPELP-VVPLWTTPCILLETLARLEGYTSVEARV-----RAREALEVVGL 125 Query: 134 EFDVLIPLKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLFAILKDMTSKG 193 + P+ L ++ V +A+A + ++L+LDE + PE + R+ +L+ + +G Sbjct: 126 AGECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAREG 185 Query: 194 KSIIYVTPHIDEIFSIADRVTVLK 217 ++I + + E+ IA V VLK Sbjct: 186 ATVIVSSHILRELEDIATHVLVLK 209 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 50.1 bits (118), Expect = 2e-07 Identities = 65/277 (23%), Positives = 114/277 (41%), Gaps = 53/277 (19%) Query: 4 EIRLLMR--TIHYH--EGNQEILKGVDFELRKGEIHALVGEHRCGKSTL----MHLLVGE 55 EI L +R T++Y+ +G L GV+ ++ +GEI A+VGE CGKSTL +L Sbjct: 3 EIVLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSN 62 Query: 56 KRLQKGEILFNGRRIQPQDPSDAYRLG-----------IAMVHQTPQVIPSLNAVENIFA 104 ++KG I+ N + + D RL ++M+ Q P + Sbjct: 63 AVIEKGSIILN---LGSGNTVDLVRLSEDELVKIRGKIVSMIFQDP-------------S 106 Query: 105 TRLPPFWSGLPQYYRYIRETRRLLALLGKEFDVLIPLKLLPATD--------------QQ 150 L P Q ++ +R + + +E ++ ++PA +Q Sbjct: 107 AALSPVHKVKKQVTDHVSGEKRRVEKIAQE---ILKKLMMPAPHMILEKYPHELSGGMKQ 163 Query: 151 AVDIARALSYDPDILILDEISNRQTPEELERLFAILKDMTSK-GKSIIYVTPHIDEIFSI 209 + IA +L P I+I DE + ++ +L + + +II +T ++ I Sbjct: 164 RIVIAASLITRPRIIIADEPTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEI 223 Query: 210 ADRVTVLKNGYRQSTEDVHQISSLRLFRLAYSLISEI 246 ADR+ V+ G+ DV + L L+ I Sbjct: 224 ADRIAVMYAGHVVEVADVFSLFERPLHPYTKGLLKSI 260 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 48.5 bits (114), Expect = 5e-07 Identities = 43/204 (21%), Positives = 95/204 (46%), Gaps = 9/204 (4%) Query: 17 GNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVGEKRLQKGEILFNGRRIQPQDPS 76 G + +LK V + +G ++ +VG + GK+TL L+G R +G + G ++ S Sbjct: 19 GGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALLGEPVERAGGS 78 Query: 77 DAYRLGIAMVHQTPQVIPSLNAVENIFATRLPPFWSGLPQYYRYIRETRRLLALLGKEFD 136 R +A + + + ++ E + RL G+ Y+ E RL L G+ + Sbjct: 79 LFRR--VAYLPEDGEPYRNMTGHEFL---RLYASIYGVEDLEGYLEEASRLSGLGGRLGE 133 Query: 137 VLIPLKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELERLFAILKDMTSK-GKS 195 ++ ++ + +A L+ P + +LDE + P + +LK+ + + G + Sbjct: 134 ---RVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERHGVT 190 Query: 196 IIYVTPHIDEIFSIADRVTVLKNG 219 ++ + ++ E+ S+ +T++ +G Sbjct: 191 VLLSSHNMYEVESVCSEITMISSG 214 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 45.8 bits (107), Expect = 3e-06 Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 31/215 (14%) Query: 9 MRTIHY-HEGNQEILKGVDFELRKGEIHALVGEHRCGKSTLMHLLVG-EKRLQ----KGE 62 +R + Y + G +L+GV E +G I L G GKST++ + G R+ +GE Sbjct: 6 LRDVWYRYPGGGWVLRGVSLEAPRG-ITLLAGPTGGGKSTILRVAAGLATRIYGGYLRGE 64 Query: 63 ILFNGRRIQPQDPSDAYRLGIAMVHQTPQVIPSLNAVENIF-ATRLPPFWSGLPQYYRYI 121 + G+ + D + L + TP+ +E + A+ LPP W Sbjct: 65 VEARGKPVLVPQDYDLFILSL-----TPR-----EELEYCYEASGLPP-WEAR------- 106 Query: 122 RETRRLLALLGKEFDVLIPLKLLPATDQQAVDIARALSYDPDILILDEISNRQTPEELER 181 RE RL LG E + + L A ++Q V IA AL+ ++L++DE Q P +E Sbjct: 107 REAVRLAEELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVES 166 Query: 182 LFAILKDMTSKG-----KSIIYVTPHIDEIFSIAD 211 L +L+ + +G + Y+ P ++ + D Sbjct: 167 LIRLLRRLDVEGVVVAEHRVHYLLPAASSVYLVYD 201 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 615,103 Number of Sequences: 1700 Number of extensions: 27124 Number of successful extensions: 171 Number of sequences better than 1.0e-04: 32 Number of HSP's better than 0.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 119 Number of HSP's gapped (non-prelim): 41 length of query: 616 length of database: 492,079 effective HSP length: 82 effective length of query: 534 effective length of database: 352,679 effective search space: 188330586 effective search space used: 188330586 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718037|ref|YP_003873569.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (506 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 459,788 Number of Sequences: 1700 Number of extensions: 19650 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 0 length of query: 506 length of database: 492,079 effective HSP length: 81 effective length of query: 425 effective length of database: 354,379 effective search space: 150611075 effective search space used: 150611075 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718038|ref|YP_003873570.1| transporter [Spirochaeta thermophila DSM 6192] (372 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 332,473 Number of Sequences: 1700 Number of extensions: 13478 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 372 length of database: 492,079 effective HSP length: 78 effective length of query: 294 effective length of database: 359,479 effective search space: 105686826 effective search space used: 105686826 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718039|ref|YP_003873571.1| transporter [Spirochaeta thermophila DSM 6192] (510 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 268 3e-73 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 165 3e-42 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 110 6e-26 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 105 3e-24 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 103 8e-24 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 103 1e-23 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 102 2e-23 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 100 1e-22 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 99 2e-22 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 99 2e-22 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 98 5e-22 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 91 5e-20 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 90 1e-19 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 90 1e-19 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 89 2e-19 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 89 3e-19 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 85 5e-18 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 84 6e-18 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 83 2e-17 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 82 3e-17 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 82 3e-17 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 82 3e-17 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 82 4e-17 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 80 2e-16 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 78 6e-16 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 77 8e-16 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 77 1e-15 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 75 3e-15 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 74 6e-15 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 74 1e-14 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 69 2e-13 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 67 1e-12 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 67 1e-12 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 65 3e-12 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 65 4e-12 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 65 4e-12 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 59 2e-10 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 57 8e-10 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 55 3e-09 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 47 8e-07 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 268 bits (684), Expect = 3e-73 Identities = 185/504 (36%), Positives = 279/504 (55%), Gaps = 43/504 (8%) Query: 12 VTKDFP-GVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNVFLDGE 70 + K +P GV+ALD+V F++R GE+H L GENGAGK+TLM+IL G G +++ G Sbjct: 18 IVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTM--GEIYVWGR 75 Query: 71 EIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIFLGREPRTPAGTIDWDRLYADTKA 130 ++ + AI GIA+VYQ+ LV MTV ENI + ++ R A + Sbjct: 76 KVSWR--GPWDAIRNGIAMVYQQFRLVESMTVEENIAIY------LSSLGLGRSEARRRT 127 Query: 131 L--LDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEVETLMR 188 L + GL+I + V DL +G +Q VEI +ALS AKVLILDEPTS L+ E E L Sbjct: 128 LETAERLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFS 187 Query: 189 ILATLKERGVTCIFITHRLNEFFRITDSITVLRDGKVIDTLK-TSETNVEHLISLMVGRE 247 L LK+ GV+ ++ITH+L E R+ D +TVLR G+V ++ T+ E L LMVG Sbjct: 188 TLRLLKDMGVSVVYITHKLGEVVRVADRVTVLRRGRVSAVIEDVGRTSEEELARLMVG-T 246 Query: 248 MKERFPSRSVIPGEEIFSVEGWT--VEDPERPGKVVIHDVSFSLRKGEVLGIAGLMGSGR 305 + P G E+ SV G + V+ ER + +VS +R+GE++GIAG+ G+G+ Sbjct: 247 LPPPTPRPPGKVGRELLSVRGVSVVVDGVER-----VREVSLEVREGEIVGIAGVAGNGQ 301 Query: 306 TELVMSLFGEYGRVVRGRVFLEGRELFIRSARDAISHGISLVPEDRKKQGLILRQTILQN 365 ELV ++ G R VRG + ++GR I + D G + DR K L + ++ +N Sbjct: 302 EELVDAIIG-LRRPVRGSIEVQGRR--IEGSLDFYRAGGGYIAGDRGKV-LAMDYSVAEN 357 Query: 366 MALPNMEMFSGFGYIDKNKEL--------KLCSEYSTRLTVKTPSLHAPVDTLSGGNQQK 417 +A F Y +K L L R + S PV LSGGNQQK Sbjct: 358 IA---------FLYYTASKTLLLRRSRLEDLFRRLVERFRLVARSPWTPVGRLSGGNQQK 408 Query: 418 VVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKLINQLVASGVSVILISSELEEVMGMSD 477 V++ +++ K+L+ +PT+G+D+ + L+++L G ++L+S++L+E++ +SD Sbjct: 409 VIVGSEVLRGFKLLVAVNPTQGLDIATTSFVRNLLSELARQGAGILLVSTDLDEILELSD 468 Query: 478 RILVMCEGHATGILEREEFDQERI 501 RI VM G TG+LER + E++ Sbjct: 469 RIYVMSGGRVTGVLERSQATPEKL 492 Score = 63.9 bits (154), Expect = 9e-12 Identities = 61/239 (25%), Positives = 99/239 (41%), Gaps = 5/239 (2%) Query: 6 ILRIEHVTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNV 65 +L + V+ GV + +VS VR GEI G+ G G G+ L+ + G+ G++ Sbjct: 262 LLSVRGVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGL--RRPVRGSI 319 Query: 66 FLDGEEIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIFLGREPRTPAGTIDWDRLY 125 + G I R G + L +V ENI + + RL Sbjct: 320 EVQGRRIEGSLDFYRAG--GGYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRRSRLE 377 Query: 126 ADTKALLDEFGLDIHFS-AKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEVE 184 + L++ F L V LS G QQ V + + K+L+ PT L A Sbjct: 378 DLFRRLVERFRLVARSPWTPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTS 437 Query: 185 TLMRILATLKERGVTCIFITHRLNEFFRITDSITVLRDGKVIDTLKTSETNVEHLISLM 243 + +L+ L +G + ++ L+E ++D I V+ G+V L+ S+ E L LM Sbjct: 438 FVRNLLSELARQGAGILLVSTDLDEILELSDRIYVMSGGRVTGVLERSQATPEKLGVLM 496 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 165 bits (417), Expect = 3e-42 Identities = 135/493 (27%), Positives = 241/493 (48%), Gaps = 33/493 (6%) Query: 7 LRIEHVTKDFPG-VRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNV 65 L +E + +PG V AL V+ S G + L GENGAGK+TL+K + GV +G + Sbjct: 5 LAVEDLDVVYPGGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVK--PRKGRI 62 Query: 66 FLDGEEIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIFL-----GREPRTPAGTID 120 +DG E+R + ++ GI + Q + P + E++ + GR+ AG Sbjct: 63 LVDGYELRPKGPG--DSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRK----AGLRQ 116 Query: 121 WDRLYADTKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSD 180 + A+ L GL+I + ++ ++Q +E+ +AL+ ++ ++LDEPT+ L+ Sbjct: 117 ARTMLAEASEAL---GLNIDPDRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTP 173 Query: 181 AEVETLMRILATLKERGVTCIFITHRLNEFFRITDSITVLRDG-KVIDTLKTSETNVEHL 239 E ++ L G + +THR+ E D + +LR G KV + S T E + Sbjct: 174 EEAARMLEAAGRLAASGAAVLLVTHRIGEAMEHADRLVILRKGVKVYEGPPPSST--EEV 231 Query: 240 ISLMVGREMKERFP---SRSVIPGEEIFSVEGWTVEDPERPGKVVIHDVSFSLRKGEVLG 296 LM G + R P + + G + SV+ V P R + +R+GEV+G Sbjct: 232 AKLMFGEVLAPREPKTFTAATSTGRPVLSVD--RVSLPPR-----LRMARLEVRQGEVVG 284 Query: 297 IAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFIRSARDAISHGISLVPEDRKKQGL 356 +AG+ G+G+ EL + G + +GR+ + G ++ G+ ++PE+R L Sbjct: 285 VAGVAGNGQEELFEVIVG-LRKPAKGRILIAGVDVTRAPPLARRRLGLGVIPEERLGHAL 343 Query: 357 ILRQTILQNMALPNMEMFSGFGYIDKNKELKLCSEYSTRLTVKTPSLHAPVDTLSGGNQQ 416 + ++I N+AL GF +D KL E + +K S VD LSGGN Q Sbjct: 344 VPGESIAFNIALSIHTARDGF-IVDWRYYEKLAEEMIRDMGIKAVSPRQMVDELSGGNMQ 402 Query: 417 KVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKLINQLVASGVSVILISSELEEVMGMS 476 ++V+++ L +P++L+ +P G+D+ + + +++ G V++I +L+ ++ +S Sbjct: 403 RLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRMSSERG-GVLVIDEDLDFLLRVS 461 Query: 477 DRILVMCEGHATG 489 ++I V G G Sbjct: 462 NKIYVASGGIVKG 474 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 110 bits (276), Expect = 6e-26 Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 16/233 (6%) Query: 6 ILRIEHVTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNV 65 +L E++T F GV ALD+VS VRRGEI G+ G NGAGK++L+ ++ GVY G V Sbjct: 1 MLWTENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYK--PQRGRV 58 Query: 66 FLDGEEIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIFLGREPRTPAGTID----- 120 + G +I + Q I G++ +Q L MTV ENI + P T ++ Sbjct: 59 YFKGRDITGLKP--HQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWA 116 Query: 121 -----WD-RLYADTKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEP 174 W+ + ++D L H + + L G Q+ V++A AL++N +V+++DEP Sbjct: 117 FRAKRWEVEARERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEP 176 Query: 175 TSALSDAEVETLMR-ILATLKERGVTCIFITHRLNEFFRITDSITVLRDGKVI 226 + LS E E ++R I+ T + T + I H + + D + V+ GKVI Sbjct: 177 MAGLSKEEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVI 229 Score = 77.0 bits (188), Expect = 1e-15 Identities = 58/219 (26%), Positives = 111/219 (50%), Gaps = 16/219 (7%) Query: 278 GKVVIHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFIRSAR 337 G + +VS +R+GE+LGI G G+G+T L+ + G Y + RGRV+ +GR++ Sbjct: 13 GVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVY-KPQRGRVYFKGRDITGLKPH 71 Query: 338 DAISHGISLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYIDK----------NKELK 387 I+ G+S + + L T+L+N+ + + ++ ++K E + Sbjct: 72 QRITLGLSRTFQHSE---LFHSMTVLENIMV-RLHPWTRGSILEKALWAFRAKRWEVEAR 127 Query: 388 LCSEYSTRLTVKTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYE 447 +E+ L H+P+ L G Q+KV ++ L + P+V+++D+P G+ K + Sbjct: 128 ERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEKED 187 Query: 448 IYK-LINQLVASGVSVILISSELEEVMGMSDRILVMCEG 485 I + +I +++LI ++E V + DR++VM G Sbjct: 188 IVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYG 226 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 105 bits (261), Expect = 3e-24 Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 12/223 (5%) Query: 7 LRIEHVTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGV-YPHGTYEGNV 65 +R+E V K F V A+D V S++ GE L G +G GK+T ++++AG+ YP EG + Sbjct: 4 IRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPD---EGRI 60 Query: 66 FLDGEEIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIFLGREPRTPAGTIDWDRLY 125 +DGE++ F + ++ +A+V+Q AL P M+V +NI R + D + Sbjct: 61 LIDGEDVTF-----KDPKDRNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIR 115 Query: 126 ADTKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEVET 185 + ++ K LS G+QQ V +ARAL KV ++DEP S L DA + Sbjct: 116 RRVIEVAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNL-DALLRL 174 Query: 186 LMR--ILATLKERGVTCIFITHRLNEFFRITDSITVLRDGKVI 226 MR + K+ +T +++TH E + D I V+ G+V+ Sbjct: 175 AMRAELKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVV 217 Score = 71.2 bits (173), Expect = 5e-14 Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 39/237 (16%) Query: 275 ERPGKVVIHD-VSFSLRKGEVLGIAGLMGSGRTELVMSLFG-EYGRVVRGRVFLEGRELF 332 +R GKVV D V S++ GE + G G G+T + + G EY GR+ ++G ++ Sbjct: 11 KRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPD--EGRILIDGEDVT 68 Query: 333 IRSARDAISHGISLVPEDRKKQGLILRQTILQNMAL-PNMEMFSGFGYID--KNKELKLC 389 + P+DR + QN AL P+M +F + + KE+ L Sbjct: 69 FKD------------PKDRNVA------MVFQNYALYPHMSVFDNIAFTLHLRRKEMGLT 110 Query: 390 SEYSTRLTVKTPSLHAPVDTL-------SGGNQQKVVISKWLMKEPKVLILDDPTRGID- 441 + R ++ L D L SGG QQ+V +++ L++ PKV ++D+P +D Sbjct: 111 KDDIRRRVIEVAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDA 170 Query: 442 ---VGAKYEIYKLINQLVASGVSVILISSELEEVMGMSDRILVMCEGHATGILEREE 495 + + E+ KL L ++ + ++ + E M M+DRI VM +G + EE Sbjct: 171 LLRLAMRAELKKLQKDL---KITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEE 224 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 103 bits (258), Expect = 8e-24 Identities = 76/223 (34%), Positives = 115/223 (51%), Gaps = 12/223 (5%) Query: 6 ILRIEHVTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNV 65 IL + V K F G+ AL VSFSVRRGE GL G NGAGK+TL I++G+Y G V Sbjct: 4 ILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPD--RGRV 61 Query: 66 FLDGEEIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIFLGREPRTPAGTIDWDRLY 125 G +I R GIA +Q + + +TV N+ +G RT D Sbjct: 62 IYKGVDITGWPAYRRS--RAGIARTFQIVRPLANLTVLNNVIVGALLRTN------DIRE 113 Query: 126 ADTKAL--LDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEV 183 A +A+ +D GL +DL++ +++ +E+ARAL+ ++L+LDE + L EV Sbjct: 114 ARERAMEAIDMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREV 173 Query: 184 ETLMRILATLKERGVTCIFITHRLNEFFRITDSITVLRDGKVI 226 + L+ L + +RG+T I + H + + + VL G+ I Sbjct: 174 DDLVYTLLEISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKI 216 Score = 50.8 bits (120), Expect = 8e-08 Identities = 46/213 (21%), Positives = 100/213 (46%), Gaps = 26/213 (12%) Query: 278 GKVVIHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEY----GRVVRGRVFLEGRELFI 333 G + VSFS+R+GE +G+ G G+G+T L + G Y GRV+ V + G + Sbjct: 16 GIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYKGVDITGWPAYR 75 Query: 334 RSARDAISHGISLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYIDKNKELKLCSEYS 393 RS R I+ +V + T+L N+ + G + + +++ E + Sbjct: 76 RS-RAGIARTFQIVRP-------LANLTVLNNVIV---------GALLRTNDIREARERA 118 Query: 394 TRLTVKTPSLHAPVDTLSGG----NQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIY 449 + L D L+ ++++ +++ L +P++L+LD+ G+ ++ Sbjct: 119 ME-AIDMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLV 177 Query: 450 KLINQLVASGVSVILISSELEEVMGMSDRILVM 482 + ++ G+++I++ + VM ++R++V+ Sbjct: 178 YTLLEISKRGITIIMVEHVMRAVMNFAERVIVL 210 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 103 bits (257), Expect = 1e-23 Identities = 78/250 (31%), Positives = 124/250 (49%), Gaps = 27/250 (10%) Query: 7 LRIEHVTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNVF 66 +R+E VTK F ALD VS ++ GEI L G +G GK+T ++++AG EG V+ Sbjct: 4 IRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGF--ETPDEGRVY 61 Query: 67 LDGEEIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIFLG----REPRTP-AGTIDW 121 + ++ + + E+ A+V+Q AL P M V +NI G + PR+ + W Sbjct: 62 IGSRDV-----TMLKPYERNTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRW 116 Query: 122 DRLYADTKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDA 181 + LLD + LS G+QQ V +ARA+ +VL++DEP S L DA Sbjct: 117 AAELLEIDHLLDRY---------PHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNL-DA 166 Query: 182 EVETLMR--ILATLKERGVTCIFITHRLNEFFRITDSITVLRDGKVIDT---LKTSETNV 236 + MR I+ K GVT +++TH E I+ + V+ G+V ++ E Sbjct: 167 HLRLKMREEIVRLQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVYEKPA 226 Query: 237 EHLISLMVGR 246 + ++ +GR Sbjct: 227 TYFVATFIGR 236 Score = 66.6 bits (161), Expect = 1e-12 Identities = 54/213 (25%), Positives = 101/213 (47%), Gaps = 26/213 (12%) Query: 280 VVIHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFIRSARDA 339 V + VS ++ GE+ + G G G+T + + G + GRV++ R++ + Sbjct: 17 VALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAG-FETPDEGRVYIGSRDVTM------ 69 Query: 340 ISHGISLVPEDRKKQGLILRQTILQNMAL-PNMEMFSGFGYIDKNKELKLCS-----EYS 393 L P +R + QN AL P+M +F Y K ++L ++ Sbjct: 70 ------LKPYERNTA------MVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWA 117 Query: 394 TRLTVKTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKLIN 453 L L LSGG QQ+V +++ ++ EP+VL++D+P +D + ++ + I Sbjct: 118 AELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIV 177 Query: 454 QLVAS-GVSVILISSELEEVMGMSDRILVMCEG 485 +L GV+++ ++ + EE + +S R+ VM G Sbjct: 178 RLQKRLGVTIVYVTHDQEEALSISHRVAVMNRG 210 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 102 bits (254), Expect = 2e-23 Identities = 80/248 (32%), Positives = 126/248 (50%), Gaps = 23/248 (9%) Query: 1 MGDDYILRIEHVTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVY-PHG 59 M D ILR+E + K F G+ ALD V+ + RG++ L G NG+GK+TL+ +++G Y P G Sbjct: 1 MAGDIILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDG 60 Query: 60 TYEGNVFLDGEEIRFEQGAIRQAIEK-GIAIVYQ-----------ELALVPKMTVGENIF 107 G V G +I G I K G+ +Q E L + GEN++ Sbjct: 61 ---GRVLFKGRDI---TGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVY 114 Query: 108 L-GREPRTPAGTIDWDRLYADTKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENA 166 L G R G R A +L GLD + + +LS G+ +++EIARA+ + A Sbjct: 115 LAGLARRLWLGF--EKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGA 172 Query: 167 KVLILDEPTSALSDAEVETLM-RILATLKERGVTCIFITHRLNEFFRITDSITVLRDGKV 225 +++I+DEP + ++ ++M RI +E+G+T + I HR+ D + + GKV Sbjct: 173 EMIIMDEPAAGVNPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKV 232 Query: 226 IDTLKTSE 233 I + K E Sbjct: 233 IASGKPDE 240 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 99.8 bits (247), Expect = 1e-22 Identities = 74/247 (29%), Positives = 135/247 (54%), Gaps = 39/247 (15%) Query: 19 VRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNVFLDGEEIRFEQG- 77 V+A+D VS S+++GEI G+ GE+G+GK+TL K + G+ H + G+VF+D ++ E+ Sbjct: 27 VKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGL--HRPFTGHVFIDIDKGELEEAV 84 Query: 78 AIRQAIEKGIAIVYQELALVPKMT----------------------VGENIFLGREPRTP 115 +I +A+++G + +++ K+ V ++ + PR Sbjct: 85 SIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMK 144 Query: 116 AGTIDWD--RLYADTKA----------LLDEFGLDIHFSAKVE-DLSVGKQQMVEIARAL 162 G I + R++ K+ +L+ GL F+ + +LS G++Q V IARAL Sbjct: 145 VGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIARAL 204 Query: 163 SENAKVLILDEPTSALSDAEVETLMRILATL-KERGVTCIFITHRLNEFFRITDSITVLR 221 + N K+L+LDEPTSAL + ++R+L L K+ G+T + ITH ++ ++ S+ V+ Sbjct: 205 ALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMY 264 Query: 222 DGKVIDT 228 GK++++ Sbjct: 265 SGKIMES 271 Score = 76.3 bits (186), Expect = 2e-15 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 37/239 (15%) Query: 282 IHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLE---GRELFIRSARD 338 + VS SL+KGE+LG+ G GSG+T L ++ G + R G VF++ G S + Sbjct: 30 VDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLH-RPFTGHVFIDIDKGELEEAVSIYE 88 Query: 339 AISHGISLVPEDRKKQGLILRQTILQNMALPN-------MEMFSGFGYIDKNKELKL--- 388 A+ G ++ ED K+ I++ M N ++M Y N +K+ Sbjct: 89 ALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMKVGEI 148 Query: 389 ------------CSEYSTRLTVKTPSL---------HAPVDTLSGGNQQKVVISKWLMKE 427 SE R ++ P + LSGG +Q+V I++ L Sbjct: 149 IGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYE-LSGGQRQRVAIARALALN 207 Query: 428 PKVLILDDPTRGIDVGAKYEIYKLINQLVAS-GVSVILISSELEEVMGMSDRILVMCEG 485 PK+L+LD+PT +DV + +I +L+ +L G++ +LI+ ++ V MS ++VM G Sbjct: 208 PKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMYSG 266 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 99.0 bits (245), Expect = 2e-22 Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 10/226 (4%) Query: 1 MGDDYILRIEHVTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGT 60 M + ++ E + KD+ G RA+D VSF + RGE+ L G NGAGK+T +K+L+ + + Sbjct: 1 MESEAMVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTS 60 Query: 61 YEGNVFLDGEEIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIFLGREPRTPAGTID 120 G ++ G I E G +R+ I +V Q+L +M+ +N+++ + Sbjct: 61 --GEAWIAGYSIVREPGNVRRVI----GLVPQDLTADDEMSGWDNVYIQARLYGLPSSEA 114 Query: 121 WDRLYADTKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSD 180 +R T+ +LD L +V S G ++ +EIA +L + KVL LDEPT L Sbjct: 115 RER----TREVLDYLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDV 170 Query: 181 AEVETLMRILATLKERGVTCIFITHRLNEFFRITDSITVLRDGKVI 226 +L R + LK VT + TH + E ++D + ++ G+++ Sbjct: 171 HSRRSLWRYIEDLKRSAVTILLTTHYMEEAEMLSDRVAIIDRGRIV 216 Score = 68.9 bits (167), Expect = 3e-13 Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 12/204 (5%) Query: 282 IHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFIRSARDAIS 341 + VSF + +GE+ + G G+G+T + L R G ++ G + + Sbjct: 22 VDGVSFRIARGELFSLLGPNGAGKTTTIKML-STLLRPTSGEAWIAGYSIVREPGN--VR 78 Query: 342 HGISLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYIDKNKELKLCSEYSTRLTVKTP 401 I LVP+D + N+ + + + ++ + E L + Sbjct: 79 RVIGLVPQDLTADD--------EMSGWDNVYIQARLYGLPSSEARERTREVLDYLDLMEA 130 Query: 402 SLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKLINQLVASGVS 461 + H V T SGG ++K+ I+ L+ PKVL LD+PT G+DV ++ +++ I L S V+ Sbjct: 131 A-HRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLKRSAVT 189 Query: 462 VILISSELEEVMGMSDRILVMCEG 485 ++L + +EE +SDR+ ++ G Sbjct: 190 ILLTTHYMEEAEMLSDRVAIIDRG 213 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 99.0 bits (245), Expect = 2e-22 Identities = 74/234 (31%), Positives = 119/234 (50%), Gaps = 21/234 (8%) Query: 7 LRIEHVTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNVF 66 +R+++V + V AL VSFS I + G +G GK+T++K++AG+ G VF Sbjct: 6 VRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLK--PRRGRVF 63 Query: 67 LDGEEIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIFLGREPRTPAGTIDWDRLYA 126 G + G + + + V+Q+LAL P MTV +N+ G R +G + Sbjct: 64 FGGVDY---TGLPPE--RRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSG----GEVRR 114 Query: 127 DTKALLDEFGLD---IHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEV 183 + L+ GL +V LS G+QQ V +ARA++ VL+LDEP LS + Sbjct: 115 QVEWALETVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEP---LSHLDF 171 Query: 184 ETLMRILATLK----ERGVTCIFITHRLNEFFRITDSITVLRDGKVIDTLKTSE 233 + R+LA LK + G T I++TH E + D++ ++RDG+++ SE Sbjct: 172 KIRQRLLAELKRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSE 225 Score = 59.7 bits (143), Expect = 2e-10 Identities = 50/214 (23%), Positives = 99/214 (46%), Gaps = 29/214 (13%) Query: 282 IHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFIRSARDAIS 341 + VSFS + + + G G G+T ++ + G + RGRVF G + Sbjct: 21 LRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLL-KPRRGRVFFGGVDY---------- 69 Query: 342 HGISLVPEDRKKQGLILRQTILQNMALPNMEMFS---------GFGYIDKNKELKLCSEY 392 + +P +R+ G + + L P+M ++ GF + ++++ E Sbjct: 70 ---TGLPPERRSVGFVFQDLAL----FPHMTVYDNVAFGLRARGFSGGEVRRQVEWALE- 121 Query: 393 STRLTVKTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKLI 452 + LT + V LSGG QQ+V +++ + EP VL+LD+P +D + + + Sbjct: 122 TVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAEL 181 Query: 453 NQLVAS-GVSVILISSELEEVMGMSDRILVMCEG 485 +L G ++I ++ + E M ++D +++M +G Sbjct: 182 KRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDG 215 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 97.8 bits (242), Expect = 5e-22 Identities = 77/230 (33%), Positives = 119/230 (51%), Gaps = 16/230 (6%) Query: 2 GDDYILRIEHVTKDFPG----VRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYP 57 G+D + +E V K + + AL +VS SV RGE+ + G +G+GK+TL+ I+AGV Sbjct: 6 GEDLAVVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGV-- 63 Query: 58 HGTYEGNVFLDGEEIRFEQG-AIRQAIEKGIAIVYQELALVPKMTVGENIFLGREPRTPA 116 G V +DG E+ G +R+ + + V+Q+ L+P +T ENI L P A Sbjct: 64 DRPNAGRVIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIPTLTALENILL---PMALA 120 Query: 117 GTIDWDRLYADTKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTS 176 G + R + LL GL E+LS G+QQ + +A AL+ + +++ DEPT Sbjct: 121 GKANRLR----GQELLRRVGLGGKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTG 176 Query: 177 ALSDAEVETLMRI-LATLKERGVTCIFITHRLNEFFRITDSITVLRDGKV 225 L A E ++RI L RG T + TH R+ D + V+ DG++ Sbjct: 177 ELDIATGERIVRILLEEAHSRGKTVVLTTHD-PRVARMADRVAVIEDGRL 225 Score = 76.6 bits (187), Expect = 1e-15 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 12/235 (5%) Query: 258 IPGEEIFSVEGWTVEDPERPGK--VVIHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGE 315 I GE++ V V+ E G+ V + +VS S+ +GEVL I G GSG+T L+ + G Sbjct: 4 IGGEDLAVVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAG- 62 Query: 316 YGRVVRGRVFLEGRELFIRSARDAISHGISLVPEDRKKQGLILRQTILQNMALPNMEMFS 375 R GRV ++G E+ + + V ++ LI T L+N+ LP Sbjct: 63 VDRPNAGRVIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIPTLTALENILLP------ 116 Query: 376 GFGYIDKNKELKLCSEYSTRLTVKTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDD 435 K L+ E R+ + P + LSGG QQ++ ++ L +P +++ D+ Sbjct: 117 -MALAGKANRLR-GQELLRRVGLGGKERRYP-EELSGGEQQRLAVAVALANDPPIIVADE 173 Query: 436 PTRGIDVGAKYEIYKLINQLVASGVSVILISSELEEVMGMSDRILVMCEGHATGI 490 PT +D+ I +++ + S +++++ V M+DR+ V+ +G G+ Sbjct: 174 PTGELDIATGERIVRILLEEAHSRGKTVVLTTHDPRVARMADRVAVIEDGRLRGV 228 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 91.3 bits (225), Expect = 5e-20 Identities = 125/482 (25%), Positives = 206/482 (42%), Gaps = 62/482 (12%) Query: 30 RRGEIHGLCGENGAGKSTLMKILAG-VYPH-GTYEGNVFLDGEEI--RFEQGAIRQAIEK 85 R G++ GL G NG GK+T ++ILAG + P+ G EG + +EI RF ++ K Sbjct: 104 REGQVVGLLGRNGTGKTTALRILAGELKPNLGRVEGGE-PEWDEILKRFRGSELQTYFRK 162 Query: 86 GIAIVYQELALVPKMTVGENIFLGREPRTPAGTIDWDRLYADTKA----LLDEFGLDIHF 141 +V +L + K+ E + PR G + AD + L ++ GLD F Sbjct: 163 ---LVDGKLRVAHKIQYVELV-----PRRLKGRVRDLLKRADERGVALELAEQVGLDKVF 214 Query: 142 SAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEVETLMRILATLKERGVTCI 201 V LS G+ Q + I LS +A V I DEP+S L E + R++A G + Sbjct: 215 DRDVRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAARPGAYVM 274 Query: 202 FITHRLNEFFRITDSITVLRD--------GKVIDTLKTSETNVEHLISLMVGREMKERFP 253 + H L ++D + +L K T + ++ + R KE Sbjct: 275 VVEHDLAVLDYVSDLVHILYGEPGAYGIVSKPYSTREGINVFLQGYLPAENIRLRKEPIL 334 Query: 254 SRSVIPGEEIFS-----------VEGWTVEDPERPGKVVIHDVSFSLRKGEVLGIAGLMG 302 R P + + + GWT G + +L GEV+G+AG G Sbjct: 335 FRKPAPEAQPAAPGGGRQASRRRIVGWTGLRVALDG-FTLTSGEGALYGGEVIGVAGPNG 393 Query: 303 SGRTELVMSLFGEYGRVVRGRVFLEGRELFIRSARDAISHGISLVPEDRKKQGL-ILRQT 361 G+T V +L G + V G V+ +L + IS +P+ +Q L Sbjct: 394 IGKTTFVRTLAGAL-KPVEGAVYPYVEDLRVSYKPQYISP--ESLPDATVEQVLKAANPA 450 Query: 362 ILQNMALPNMEMFSGFGYIDKNKELKLCSEYSTRLTVKTPSLHAPVDTLSGGNQQKVVIS 421 IL + N+E+ K ++L L V TLSGG QKV ++ Sbjct: 451 ILAPGSWLNLELV---------KRMRL-----------DKLLERRVRTLSGGELQKVAVA 490 Query: 422 KWLMKEPKVLILDDPTRGIDVGAKYEIYKLINQLVAS-GVSVILISSELEEVMGMSDRIL 480 L +E V +LD+P+ +DV + + + I ++V + + +++ +L + +SDRI+ Sbjct: 491 AALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALVVEHDLMILDYVSDRIM 550 Query: 481 VM 482 ++ Sbjct: 551 LV 552 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 89.7 bits (221), Expect = 1e-19 Identities = 67/221 (30%), Positives = 112/221 (50%), Gaps = 14/221 (6%) Query: 7 LRIEHVTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNVF 66 +++E V K F V A+ DV+ + E + G +G+GK+TL+ ++AG+Y G ++ Sbjct: 4 VKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPS--RGRIY 61 Query: 67 LDGEEIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIFLGREPRTPAGTIDWDRLYA 126 + ++ ++ I +V+Q AL P MTV ENI R +++ + Sbjct: 62 FNDVDV-----TDLPPNKRNIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLS 116 Query: 127 DTKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEVETL 186 K L G++ LS G+QQ V +ARAL + +VL+LDEP S L DA + Sbjct: 117 VAKLL----GIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNL-DALLRIK 171 Query: 187 MR--ILATLKERGVTCIFITHRLNEFFRITDSITVLRDGKV 225 +R + KE G+T I++TH +E + D I ++ G + Sbjct: 172 IRSELKKLQKELGITAIYVTHDQSEALAMADRIAIIASGVI 212 Score = 72.0 bits (175), Expect = 3e-14 Identities = 58/216 (26%), Positives = 108/216 (50%), Gaps = 32/216 (14%) Query: 280 VVIHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFIRSARDA 339 V + DV+ + E + I G GSG+T L+ + G Y + RGR++ + Sbjct: 17 VAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIY-KPSRGRIYFNDVD--------- 66 Query: 340 ISHGISLVPEDRKKQGLILRQTILQNMAL-PNMEMFSGFGYIDKNKELKLCSEYSTRLTV 398 ++ +P +++ GL+ QN AL P+M ++ + + + + L+V Sbjct: 67 ----VTDLPPNKRNIGLVF-----QNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSV 117 Query: 399 -KTPSLHAPVDT----LSGGNQQKVVISKWLMKEPKVLILDDPTRGID----VGAKYEIY 449 K + +D LSGG QQ+V +++ L+KEP+VL+LD+P +D + + E+ Sbjct: 118 AKLLGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELK 177 Query: 450 KLINQLVASGVSVILISSELEEVMGMSDRILVMCEG 485 KL +L G++ I ++ + E + M+DRI ++ G Sbjct: 178 KLQKEL---GITAIYVTHDQSEALAMADRIAIIASG 210 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 89.7 bits (221), Expect = 1e-19 Identities = 70/211 (33%), Positives = 112/211 (53%), Gaps = 15/211 (7%) Query: 19 VRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVY-PHGTYEGNVFLDGEEIRFEQG 77 V AL VSFSV GEI+ G NGAGK+T ++IL+ + P G G + G ++ E+ Sbjct: 25 VEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDG---GEARVAGFDVVKERW 81 Query: 78 AIRQAIEKGIAIVYQELALVPKMTVGENIF-LGREPRTPAGTIDWDRLYADTKALLDEFG 136 +R+ I +++ E K+T EN++ GR P G L + K +LD G Sbjct: 82 EVRKRIGVMLSV---ERGFYWKLTGRENLYYFGRIYGIPQG-----ELKSRIKEVLDLVG 133 Query: 137 L-DIHFSAK-VEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEVETLMRILATLK 194 L D+ + K E++S+G + + +AR L ++ +VLILDEPT L A T+ ++ +L Sbjct: 134 LTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSLA 193 Query: 195 ERGVTCIFITHRLNEFFRITDSITVLRDGKV 225 G T TH + E I+D + ++ G++ Sbjct: 194 SEGRTIFITTHNMVEAEMISDRVGIIIGGRI 224 Score = 55.1 bits (131), Expect = 4e-09 Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 17/205 (8%) Query: 285 VSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFIRSARDAISHGI 344 VSFS+ +GE+ G G+G+T V R++ + +G E AR A + Sbjct: 31 VSFSVYEGEIYSFLGPNGAGKTTTV--------RILSTLLDPDGGE-----ARVAGFDVV 77 Query: 345 SLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYIDKNKELKLCSEYSTRLTV----KT 400 E RK+ G++L L E FG I + +L S L + Sbjct: 78 KERWEVRKRIGVMLSVERGFYWKLTGRENLYYFGRIYGIPQGELKSRIKEVLDLVGLTDL 137 Query: 401 PSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKLINQLVASGV 460 P + +S G + ++ +++ L+K+P+VLILD+PT G+D + I +I L + G Sbjct: 138 GGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSLASEGR 197 Query: 461 SVILISSELEEVMGMSDRILVMCEG 485 ++ + + + E +SDR+ ++ G Sbjct: 198 TIFITTHNMVEAEMISDRVGIIIGG 222 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 89.4 bits (220), Expect = 2e-19 Identities = 69/220 (31%), Positives = 120/220 (54%), Gaps = 17/220 (7%) Query: 19 VRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVY--PHGTYEGNVFLDGEEI-RFE 75 V+A+D VSF++RRGE+ G+ GE+G+GKSTL + G+ P G + +DG ++ Sbjct: 22 VKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTSMS 81 Query: 76 QGAIRQAIE-KGIAIVYQEL--ALVPKMTVGENIFLGREPRTPAGTID-WDRLYADTKAL 131 + +R+ + K +++V+Q L P TVG I + G + R+Y L Sbjct: 82 EAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVY----EL 137 Query: 132 LDEFGLDIHFSAKV-EDLSVGKQQMVEIARALSENAKVLILDEPTSALS---DAEVETLM 187 L+ GL + + +LS G++Q V IA AL+ ++I DEPT+AL A++ L+ Sbjct: 138 LESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLL 197 Query: 188 RILATLKERGVTCIFITHRLNEFFRITDSITVLRDGKVID 227 + LA E+ ++ I ITH L+ + +++ ++ GK+ + Sbjct: 198 KKLAW--EKNLSIILITHDLSVIAELAETVMIMYGGKIAE 235 Score = 82.0 bits (201), Expect = 3e-17 Identities = 58/208 (27%), Positives = 106/208 (50%), Gaps = 5/208 (2%) Query: 282 IHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEY---GRVVRGRVFLEGRELFIRSARD 338 + VSF+LR+GEVLGIAG GSG++ L S+ G GR+V GR+ ++G ++ S + Sbjct: 25 VDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTSMSEAE 84 Query: 339 AISHGISLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYIDKNKELKLCSEYSTRLTV 398 + + QG + T + + E+ + +++ + E + + Sbjct: 85 -LRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELLESVGL 143 Query: 399 KTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKLINQLV-A 457 LSGG +Q+VVI+ L EP ++I D+PT +DV + +I L+ +L Sbjct: 144 HRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLKKLAWE 203 Query: 458 SGVSVILISSELEEVMGMSDRILVMCEG 485 +S+ILI+ +L + +++ +++M G Sbjct: 204 KNLSIILITHDLSVIAELAETVMIMYGG 231 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 88.6 bits (218), Expect = 3e-19 Identities = 72/228 (31%), Positives = 105/228 (46%), Gaps = 26/228 (11%) Query: 4 DYILRIEHVTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEG 63 D +L V K + G LD V V RGE GL G NGAGK+TL+K+ G+ G Sbjct: 2 DTVLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRD--GG 59 Query: 64 NVFLDGEEIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENI-----FLGREPRTPAGT 118 V L+G + E A +G+ +V++ L M V E + +G P Sbjct: 60 RVLLNGLDPWREPRA-----REGVGVVFERPNLPSSMPVVEFLESAAAIIGSSP----SR 110 Query: 119 IDWDRLYADTKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSAL 178 +DW + GL+ H LS G +Q IA AL + L+ DEPTS L Sbjct: 111 VDW---------AIRAAGLEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNL 161 Query: 179 SDAEVETLMRILATL-KERGVTCIFITHRLNEFFRITDSITVLRDGKV 225 E ++R+LA L +E G++ + +H + E R+ I VL G++ Sbjct: 162 DPLERREVLRLLARLNREHGLSLLVSSHVIVELLRVATRIYVLAGGRL 209 Score = 57.0 bits (136), Expect = 1e-09 Identities = 50/209 (23%), Positives = 98/209 (46%), Gaps = 18/209 (8%) Query: 278 GKVVIHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFIRSAR 337 G+ V+ V + +GE +G+ G G+G+T L+ G R GRV L G + + Sbjct: 16 GQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLG-LARRDGGRVLLNGLDPWRE--- 71 Query: 338 DAISHGISLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYIDKNKELKLCSEYSTRLT 397 P R+ G++ + L + ++P +E I + ++ +++ R Sbjct: 72 ----------PRAREGVGVVFERPNLPS-SMPVVEFLESAAAIIGSSPSRV--DWAIRAA 118 Query: 398 VKTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKLINQLVA 457 LS G +Q+ I+ L+ EP+ L+ D+PT +D + E+ +L+ +L Sbjct: 119 GLEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLNR 178 Query: 458 S-GVSVILISSELEEVMGMSDRILVMCEG 485 G+S+++ S + E++ ++ RI V+ G Sbjct: 179 EHGLSLLVSSHVIVELLRVATRIYVLAGG 207 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 84.7 bits (208), Expect = 5e-18 Identities = 69/237 (29%), Positives = 114/237 (48%), Gaps = 24/237 (10%) Query: 19 VRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNVFLDGEEIRFEQGA 78 +RALD V V RG + L G NGAGK+TL+KIL+ + + G + G ++ E Sbjct: 26 IRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDS--GWARVAGFDVVREANN 83 Query: 79 IRQAIEKGIAIVYQELALVPKMTVGENIFL-----GREPRTPAGTIDWDRLYADTKALLD 133 +R I ++ E AL +++ +N++ G PR + K LL+ Sbjct: 84 VRSRIG---VVLGGERALYWRLSGWDNLWFFSQLYGIPPREAKRRV---------KELLE 131 Query: 134 EFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEVETLMRILATL 193 GL+ +VE+ S G +Q + IAR L + +VL+LDEPT L + I+ + Sbjct: 132 IVGLEEWAHVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRI 191 Query: 194 KERGVTCIFITHRLNEFFRITDSITVLRDGKVIDTLKTSETNVEHLISLMVGREMKE 250 G T + TH + E ++D + ++ G+++ +E E L SL+ G + E Sbjct: 192 VREGRTVLLTTHYMVEAEELSDRVAIISKGRIV-----AEGPPEDLKSLVGGESVIE 243 Score = 60.1 bits (144), Expect = 1e-10 Identities = 28/82 (34%), Positives = 53/82 (64%) Query: 404 HAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKLINQLVASGVSVI 463 H V+ S G +Q++ I++ L+ +P+VL+LD+PT G+D A E+ +I ++V G +V+ Sbjct: 140 HVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVL 199 Query: 464 LISSELEEVMGMSDRILVMCEG 485 L + + E +SDR+ ++ +G Sbjct: 200 LTTHYMVEAEELSDRVAIISKG 221 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 84.3 bits (207), Expect = 6e-18 Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 24/226 (10%) Query: 7 LRIEHVTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNVF 66 +R+E + K F AL + ++ GE L G +G GK+T ++I+AG+ G V+ Sbjct: 4 VRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGL--ERPDAGRVY 61 Query: 67 LDGEEIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIF----LGREPRTP-AGTIDW 121 DG ++ ++ +A+V+Q AL P M V +NI + + PR + W Sbjct: 62 FDGRDV-----TGLPPKDRNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRW 116 Query: 122 DRLYADTKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDA 181 + LLD + LS G+QQ V +ARA+ +VL++DEP S L DA Sbjct: 117 AAELLEIDHLLDRY---------PHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNL-DA 166 Query: 182 EVETLMR--ILATLKERGVTCIFITHRLNEFFRITDSITVLRDGKV 225 + MR I + GVT I++TH E I D I V+ G++ Sbjct: 167 ILRIKMRSEIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEI 212 Score = 67.0 bits (162), Expect = 1e-12 Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 33/219 (15%) Query: 275 ERPGKVV-IHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFI 333 +R GK V + + ++ GE + + G G G+T + + G R GRV+ +GR++ Sbjct: 11 KRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAG-LERPDAGRVYFDGRDV-- 67 Query: 334 RSARDAISHGISLVPEDRKKQGLILRQTILQNMAL-PNMEMFSGFGYIDKNKELKLCS-- 390 L P+DR + Q+ AL P+M +F + K K+L Sbjct: 68 ----------TGLPPKDRNVA------MVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIV 111 Query: 391 ---EYSTRLTVKTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGID----VG 443 ++ L L LSGG QQ+V +++ ++ EP+VL++D+P +D + Sbjct: 112 RRVRWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIK 171 Query: 444 AKYEIYKLINQLVASGVSVILISSELEEVMGMSDRILVM 482 + EI KL +L GV++I ++ + E M + DRI+VM Sbjct: 172 MRSEIKKLQRRL---GVTMIYVTHDQVEAMVIGDRIVVM 207 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 82.8 bits (203), Expect = 2e-17 Identities = 66/223 (29%), Positives = 109/223 (48%), Gaps = 19/223 (8%) Query: 22 LDDVSFSVRRGEIHGLCGENGAGKSTLMKI---LAGVYPHGTYEGNVFLDGEEIRFEQGA 78 L +SF + G + + G +G+GKSTL+++ L + P EG V+++ + E Sbjct: 21 LKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVMKEDP- 79 Query: 79 IRQAIEKGIAIVYQELALVPKMTVGENIFLG-------REPRTPAGTIDWDRLYADTKAL 131 I + +V+QE P MT+ EN+ +G + + ++W A L Sbjct: 80 --YNIRRYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEIVEWALKMAH---L 134 Query: 132 LDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSD-AEVETLMRIL 190 DE + S LS G++Q + +ARAL+ +VL+LDEPT+ + + V+ I+ Sbjct: 135 WDE--VKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIV 192 Query: 191 ATLKERGVTCIFITHRLNEFFRITDSITVLRDGKVIDTLKTSE 233 KE T I +TH + RI+D I L +G+VI+ T E Sbjct: 193 EYAKEEMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKE 235 Score = 57.4 bits (137), Expect = 8e-10 Identities = 59/225 (26%), Positives = 112/225 (49%), Gaps = 35/225 (15%) Query: 279 KVVIHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFIRSARD 338 K ++ +SF + G V I G GSG++ L+ + + RV EG E++I + Sbjct: 18 KHILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARV--EG-EVWINN--- 71 Query: 339 AISHGISLVPED----RKKQGLILRQ-------TILQNMAL-PNMEMFSGFGYIDKNKEL 386 ++++ ED R+ G++ ++ TI +N+A+ P + G KEL Sbjct: 72 -----MNVMKEDPYNIRRYTGMVFQEPNPFPHMTIYENVAIGPKLH-----GLAKNKKEL 121 Query: 387 KLCSEYSTRLT-----VKTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGID 441 E++ ++ VK P LSGG +Q++ +++ L +P+VL+LD+PT ID Sbjct: 122 DEIVEWALKMAHLWDEVKDRLSDYP-HQLSGGQRQRLSLARALALKPRVLLLDEPTANID 180 Query: 442 VGAKYEIYKLINQLVASGV-SVILISSELEEVMGMSDRILVMCEG 485 + +I + I + + +VI+++ ++ +SD+IL + EG Sbjct: 181 PVSTVKIEQSIVEYAKEEMATVIIVTHTPQQAARISDQILFLYEG 225 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 82.0 bits (201), Expect = 3e-17 Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 26/247 (10%) Query: 2 GDDYILRIEHVTKDFPG---------------VRALDDVSFSVRRGEIHGLCGENGAGKS 46 GD YI+ I + +P VRA+D V +R GE+ + GE+G GK+ Sbjct: 3 GDGYIVSIRGLKVHYPVYYSLLKRILGRPDAVVRAVDGVDLGIREGEVLAIVGESGCGKT 62 Query: 47 TLMKILAGVYPHGTYEGNVFLDGEEIRFEQGAIRQAIEKGIAIVYQE--LALVPKMTVGE 104 TL K + G+ +G ++ GE + + A + + + + +V+Q+ +L P M VG+ Sbjct: 63 TLGKAIVGI--EEPSDGAIYYRGELLTPHRLARDRRLRRKLQMVFQDPYKSLDPLMPVGD 120 Query: 105 NIFLGREPRTPAGTIDWDRLYADTKALLDEFGLD---IHFSAKVEDLSVGKQQMVEIARA 161 + EP G + +L+ GL + K LS G++Q V IAR Sbjct: 121 QV---AEPLVIHGLARGEEARRRAVEMLETVGLTPGREFYWRKPHQLSGGQRQRVAIART 177 Query: 162 LSENAKVLILDEPTSALSDAEVETLMRILATLKER-GVTCIFITHRLNEFFRITDSITVL 220 L +V++ DEP S + + +++ ++ R G T + ITH + + D I V+ Sbjct: 178 LVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTGATIVLITHDIAVARAVADRIAVM 237 Query: 221 RDGKVID 227 GK+++ Sbjct: 238 YLGKIVE 244 Score = 61.2 bits (147), Expect = 6e-11 Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 9/215 (4%) Query: 276 RPGKVV--IHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFI 333 RP VV + V +R+GEVL I G G G+T L ++ G G ++ G L Sbjct: 30 RPDAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVG-IEEPSDGAIYYRGELLTP 88 Query: 334 -RSARDA-ISHGISLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYIDKNKELKLCSE 391 R ARD + + +V +D K L + +A P + G + + +++ Sbjct: 89 HRLARDRRLRRKLQMVFQDPYKS-LDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLE- 146 Query: 392 YSTRLTVKTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKL 451 + LT LSGG +Q+V I++ L+ EP+V++ D+P IDV + I L Sbjct: 147 -TVGLTPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDL 205 Query: 452 I-NQLVASGVSVILISSELEEVMGMSDRILVMCEG 485 I + +G +++LI+ ++ ++DRI VM G Sbjct: 206 IMDYHRRTGATIVLITHDIAVARAVADRIAVMYLG 240 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 82.0 bits (201), Expect = 3e-17 Identities = 68/249 (27%), Positives = 113/249 (45%), Gaps = 17/249 (6%) Query: 6 ILRIEHVTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNV 65 +L + + + G + L V S+ GE + G +G+GKSTL+K + + + G++ Sbjct: 4 LLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDS--GSI 61 Query: 66 FLDGEEIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIFLGREPRTPAGTIDWDRLY 125 G ++ G+ + + + I + Q +L P MTV NI E + R Sbjct: 62 VFRGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEK-----ALGLSRRD 116 Query: 126 ADTKAL--LDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEV 183 A+ +A+ L G++ LS G+QQ +ARAL+ +L+LDEPTSAL Sbjct: 117 AEERAVKYLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESR 176 Query: 184 ETLMRILATLKERGVTCIFITHRLNEFFRITDSITVLRDGKVIDTLKTSETNVEHLISLM 243 ++ L + G I +TH + ++ D + + DG V + K SE L+ Sbjct: 177 ADVLEALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSE--------LV 228 Query: 244 VGREMKERF 252 G E RF Sbjct: 229 EGSERVRRF 237 Score = 65.9 bits (159), Expect = 2e-12 Identities = 54/213 (25%), Positives = 105/213 (49%), Gaps = 17/213 (7%) Query: 278 GKVVIHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVR---GRVFLEGRELFIR 334 G+ V+ V SL GE L I G GSG++ L+ ++ R+V G + G ++ Sbjct: 16 GEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAI----PRLVEPDSGSIVFRGVDVTRL 71 Query: 335 SARDA--ISHGISLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYIDKNKELKLCSEY 392 S + I +P+ L T+L+N+ P +E G D + +Y Sbjct: 72 SGSQLRMVRRKIGYLPQS---YSLFPHMTVLRNITYP-LEKALGLSRRDAEER---AVKY 124 Query: 393 STRLTVKTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKLI 452 + L ++ + P LSGG QQ+ +++ L EP +L+LD+PT +D ++ ++ + + Sbjct: 125 LSMLGIEDLAHRHPA-RLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEAL 183 Query: 453 NQLVASGVSVILISSELEEVMGMSDRILVMCEG 485 ++ G ++I+++ E + + ++DR+ M +G Sbjct: 184 FRVATLGKAMIVVTHEADFAVKVADRMAFMEDG 216 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 82.0 bits (201), Expect = 3e-17 Identities = 74/269 (27%), Positives = 119/269 (44%), Gaps = 27/269 (10%) Query: 6 ILRIEHVTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNV 65 ++ +E + K + V AL VSFSV GE+ G G NGAGK+T +++L G + V Sbjct: 4 VIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARV 63 Query: 66 FLDGEEIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIFLGREPRTPAGTID-WDRL 124 F G E+ G + V + + VP GE F G + +D W RL Sbjct: 64 F--GVEL----------YNPGASGVRRRVGYVP----GEFEFYGGV--SGGRMLDYWCRL 105 Query: 125 YAD-----TKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALS 179 + LL+ F L + V S G +QM+ + A S ++++DEPT+ L Sbjct: 106 VGGCSRGVVRELLEAFPLPL--ERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLD 163 Query: 180 DAEVETLMRILATLKERGVTCIFITHRLNEFFRITDSITVLRDGKVIDTLKTSETNVEHL 239 ++ + + GVT F +H L+E R+ D + +LR G V+ L+ + + Sbjct: 164 PLARGRVLDFVRSKAREGVTVFFSSHVLSEVQRVADRVGLLRSG-VLVALEDVSSLLRKS 222 Query: 240 ISLMVGREMKERFPSRSVIPGEEIFSVEG 268 ++ R K P R + G + G Sbjct: 223 GKVVKARVSKNLSPDRLAVDGVRVIRSNG 251 Score = 58.9 bits (141), Expect = 3e-10 Identities = 59/226 (26%), Positives = 94/226 (41%), Gaps = 25/226 (11%) Query: 263 IFSVEGWTVEDPERPGKV-VIHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVR 321 + VEG +R G V + VSFS+ GEV G G G+G+T + L G + R Sbjct: 4 VIEVEGLV----KRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMG-FSRPTS 58 Query: 322 GRVFLEGRELFIRSARDAISHGISLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYID 381 G + G EL+ A + + VP + + G + +L + G Sbjct: 59 GSARVFGVELYNPGA-SGVRRRVGYVPGEFEFYGGVSGGRMLDYWC----RLVGG----- 108 Query: 382 KNKELKLCSEYSTR--LTVKTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRG 439 CS R L L V T S G +Q + + EP ++++D+PT G Sbjct: 109 -------CSRGVVRELLEAFPLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTG 161 Query: 440 IDVGAKYEIYKLINQLVASGVSVILISSELEEVMGMSDRILVMCEG 485 +D A+ + + GV+V S L EV ++DR+ ++ G Sbjct: 162 LDPLARGRVLDFVRSKAREGVTVFFSSHVLSEVQRVADRVGLLRSG 207 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 81.6 bits (200), Expect = 4e-17 Identities = 64/214 (29%), Positives = 115/214 (53%), Gaps = 12/214 (5%) Query: 19 VRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVY-PHGTYEGNVFLDGEEIRFEQG 77 V+A+D+V+ + RG+ GL GE+G+GK+T +++ + P G G +F DG ++ +G Sbjct: 49 VKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTG---GRIFFDGIDVMKLRG 105 Query: 78 AIRQAIEKGIAIVYQEL--ALVPKMTVGENIFLGREPRTPAGTIDWDRLYADTKALLDEF 135 + + I++Q+ +L P+ T+ I EP G D L +LL + Sbjct: 106 RGLKEFRRRAQIIFQDPYGSLNPRKTIFNLI---AEPIKVHGIKVGD-LQEYIVSLLYQV 161 Query: 136 GL-DIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEVETLMRILATLK 194 GL + H + S G++Q + IAR L+ + ++LDEPTSAL + ++ +L L+ Sbjct: 162 GLNETHLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQ 221 Query: 195 ER-GVTCIFITHRLNEFFRITDSITVLRDGKVID 227 + +T +FI+H L ++D I V+ GK+++ Sbjct: 222 RKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVE 255 Score = 61.2 bits (147), Expect = 6e-11 Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 32/228 (14%) Query: 282 IHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVV-------RGRVFLEGRELFIR 334 + +V+ + +G+ LG+ G GSG+T +GRV+ GR+F +G ++ Sbjct: 52 VDNVTIGIPRGKTLGLVGESGSGKT--------TFGRVILRLEEPTGGRIFFDGIDVMKL 103 Query: 335 SARDAISHGISLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYIDKNKELKL--CSEY 392 R + E R++ +I + P +F+ K +K+ EY Sbjct: 104 RGRG--------LKEFRRRAQIIFQDP--YGSLNPRKTIFNLIAEPIKVHGIKVGDLQEY 153 Query: 393 STRLT----VKTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEI 448 L + L+ SGG +Q++ I++ L +P+ ++LD+PT +DV + +I Sbjct: 154 IVSLLYQVGLNETHLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQI 213 Query: 449 YKLINQLVAS-GVSVILISSELEEVMGMSDRILVMCEGHATGILEREE 495 L+ L ++ + IS +L V MSD I VM G E EE Sbjct: 214 LNLLKDLQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEE 261 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 79.7 bits (195), Expect = 2e-16 Identities = 58/223 (26%), Positives = 108/223 (48%), Gaps = 11/223 (4%) Query: 4 DYILRIEHVTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEG 63 D+I+++E V+ + ++ L DVS + RG I + G NGAGKSTL+K + G Y+G Sbjct: 3 DWIIKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTT--VYKG 60 Query: 64 NVFLDGEEIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIFL-GREPRTPAGTIDWD 122 V + ++ R I G+ ++Q + ++TV EN+ L G + + Sbjct: 61 RVLFENTDVTHMPPHDRAKI--GMTFIFQLENIFRELTVYENLRLAGYDLPEDVFRDRLE 118 Query: 123 RLYADTKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAE 182 +++ L + G K LS G++QM+ +A + KV ++DEPT+ LS Sbjct: 119 EVFSMFPRLKERLG------QKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKL 172 Query: 183 VETLMRILATLKERGVTCIFITHRLNEFFRITDSITVLRDGKV 225 + ++ + L + G T + + + I D ++ +G++ Sbjct: 173 AKEVLSYVRILNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRI 215 Score = 68.6 bits (166), Expect = 4e-13 Identities = 47/205 (22%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 282 IHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFIRSARDAIS 341 + DVS + +G + I G G+G++ L+ ++FG + V +GRV E ++ D Sbjct: 21 LFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFG-FTTVYKGRVLFENTDVTHMPPHDRAK 79 Query: 342 HGISLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYIDKNKEL-KLCSEYSTRLTVKT 400 G++ + + + + T+ +N+ L ++ + D+ +E+ + RL K Sbjct: 80 IGMTFIFQ---LENIFRELTVYENLRLAGYDLPEDV-FRDRLEEVFSMFPRLKERLGQKA 135 Query: 401 PSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKLINQLVASGV 460 TLSGG +Q + ++ +M++PKV ++D+PT G+ E+ + L G Sbjct: 136 -------GTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVRILNKEGY 188 Query: 461 SVILISSELEEVMGMSDRILVMCEG 485 +V+L+ ++ + + D+ +++ G Sbjct: 189 TVVLVEQNVKASLEIGDKGVLVVNG 213 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 77.8 bits (190), Expect = 6e-16 Identities = 65/228 (28%), Positives = 104/228 (45%), Gaps = 33/228 (14%) Query: 10 EHVTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNVFLDG 69 E V K G L DVS +V RG ++G+ G NGAGK+TL + L G+Y G V L G Sbjct: 12 EGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLY--RADRGRVALLG 69 Query: 70 EEIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIFLGREPRTPAGTIDWDRLYA--- 126 E + G++ ++ +A +P+ EP ++ RLYA Sbjct: 70 EPVERAGGSL-----------FRRVAYLPE---------DGEPYRNMTGHEFLRLYASIY 109 Query: 127 ---DTKALLDE----FGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALS 179 D + L+E GL +V S G ++ + +A L+ + +LDEPT+ L Sbjct: 110 GVEDLEGYLEEASRLSGLGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLD 169 Query: 180 DAEVETLMRILATLKER-GVTCIFITHRLNEFFRITDSITVLRDGKVI 226 + R+L ER GVT + +H + E + IT++ G+++ Sbjct: 170 PVYSVGIRRLLKEYSERHGVTVLLSSHNMYEVESVCSEITMISSGRIV 217 Score = 70.1 bits (170), Expect = 1e-13 Identities = 58/209 (27%), Positives = 104/209 (49%), Gaps = 15/209 (7%) Query: 278 GKVVIHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFIRSAR 337 G+ V+ DVS ++ +G V G+ G G+G+T L +L G Y R RGRV L G + A Sbjct: 20 GRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLY-RADRGRVALLGEP--VERAG 76 Query: 338 DAISHGISLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYIDKNKELKLCSEYSTRLT 397 ++ ++ +PED + +NM E + I ++L+ E ++RL+ Sbjct: 77 GSLFRRVAYLPEDGEP---------YRNMT--GHEFLRLYASIYGVEDLEGYLEEASRLS 125 Query: 398 VKTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKLINQL-V 456 L V + S G +++++++ L +P + +LD+PT G+D I +L+ + Sbjct: 126 GLGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSE 185 Query: 457 ASGVSVILISSELEEVMGMSDRILVMCEG 485 GV+V+L S + EV + I ++ G Sbjct: 186 RHGVTVLLSSHNMYEVESVCSEITMISSG 214 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 77.4 bits (189), Expect = 8e-16 Identities = 77/256 (30%), Positives = 120/256 (46%), Gaps = 23/256 (8%) Query: 19 VRALDDVSFSVRRGEIHGLCGENGAGKSTL-MKILAGVYPHGTYEGN---------VFLD 68 VRA+D VS SV +GE + GE+G+GKSTL + I + P G G + L Sbjct: 20 VRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRILYSGVDLLSLA 79 Query: 69 GEEIRFEQGAIRQAIEKGIAIVYQELA--LVPKMTVGENIFLGREPRTPAGTIDWDRLYA 126 GEE+R +G + I +V+Q+ L P TVG I A + A Sbjct: 80 GEELRRYRG-------REIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLASSGSEAESMA 132 Query: 127 DTKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEVETL 186 L D S LS G++Q V IA A++ K+LI DEPT+AL + Sbjct: 133 GDALELVGIPRD-RASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKI 191 Query: 187 MRILATL-KERGVTCIFITHRLNEFFRITDSITVLRDGKVIDTLKTSE--TNVEHLISLM 243 M ++ L +ERG+T + +TH + +D I V+ G++++ + +N H + M Sbjct: 192 MDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDVVSNPIHPYTEM 251 Query: 244 VGREMKERFPSRSVIP 259 + + + + + R V P Sbjct: 252 LIKSVPDPWEDREVKP 267 Score = 70.1 bits (170), Expect = 1e-13 Identities = 67/223 (30%), Positives = 107/223 (47%), Gaps = 15/223 (6%) Query: 282 IHDVSFSLRKGEVLGIAGLMGSGRTELVMS---LFGEYGRVVRGRVFLEGRELFIRSARD 338 + VS S+ KGE + I G GSG++ L +S L GR+V GR+ G +L + + Sbjct: 23 VDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRILYSGVDLLSLAGEE 82 Query: 339 AISHG---ISLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYIDKNKELKLCSEYSTR 395 + I +V +D L +T+ +A +E G E + + + Sbjct: 83 LRRYRGREIGMVFQDPTAY-LDPYRTVGSQIAESLLE----HGLASSGSEAESMAGDALE 137 Query: 396 LTVKTPSLHAPV--DTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKLIN 453 L V P A V LSGG +Q+V I+ + EPK+LI D+PT +DV + +I L+ Sbjct: 138 L-VGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKIMDLMK 196 Query: 454 QLVAS-GVSVILISSELEEVMGMSDRILVMCEGHATGILEREE 495 +L G++V+L++ ++ SDRI VM G I E+ Sbjct: 197 KLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAED 239 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 76.6 bits (187), Expect = 1e-15 Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 21/218 (9%) Query: 17 PGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGV--YPHG-TYEGNVFLDGEEIR 73 P + + ++S SV +G I L G NGAGK+TL+K ++GV Y G G++ L+GE+I Sbjct: 16 PFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDIT 75 Query: 74 FEQGAIRQAIEKGIAIVYQELALVPKMTVGENIFLGREPRTPAGTIDWDRLYADTKALLD 133 + + +G+ V + + ++T EN+ AG D +++L Sbjct: 76 NREP--DEIARRGVIYVMEGRRIFKELTTEENLV---SVAYAAGA-----SRDDIRSVLS 125 Query: 134 EF-GLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEVETLMRILAT 192 F L K +LS G+QQM+ IA AL K+L+LDEP+ L+ + +I AT Sbjct: 126 YFPRLKERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAP---KITSQIYAT 182 Query: 193 LK----ERGVTCIFITHRLNEFFRITDSITVLRDGKVI 226 +K E G+T + + I+D V+ +G+++ Sbjct: 183 IKMLHREEGLTILLAEQNARKALEISDYGYVIENGRIV 220 Score = 73.6 bits (179), Expect = 1e-14 Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 17/212 (8%) Query: 271 VEDPERPGKVVIHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFG----EYGRVVRGRVFL 326 VE P +VI ++S S+ KG + + G G+G+T L+ ++ G E GRV RG + L Sbjct: 10 VEIMYHPFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQL 69 Query: 327 EGRELFIRSARDAISHGISLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYIDKNKEL 386 EG ++ R + G+ V E R+ + T +N+ ++ +G D L Sbjct: 70 EGEDITNREPDEIARRGVIYVMEGRR---IFKELTTEENLV--SVAYAAGASRDDIRSVL 124 Query: 387 KLCSEYSTRLTVKTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKY 446 RL K +L SGG QQ + I+ L+ PK+L+LD+P+ G+ Sbjct: 125 SYFPRLKERLGEKAGNL-------SGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITS 177 Query: 447 EIYKLINQL-VASGVSVILISSELEEVMGMSD 477 +IY I L G++++L + + +SD Sbjct: 178 QIYATIKMLHREEGLTILLAEQNARKALEISD 209 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 75.5 bits (184), Expect = 3e-15 Identities = 70/231 (30%), Positives = 106/231 (45%), Gaps = 20/231 (8%) Query: 19 VRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAG-VYPHGTY-EGNVFLDGEEIR--- 73 V+A++DVSF + RGE + L GE G GKS + L +YP G EG ++ E R Sbjct: 26 VKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGRIVEGKIYYYPEPGRRVD 85 Query: 74 ---FEQGAIRQAIEKGIAIVYQE--LALVPKMTVGENI-----FLGREPRTPAGTIDWDR 123 ++ +R+ + IA ++Q+ AL P T+G + GR G R Sbjct: 86 IMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETMLAHGRVRSLREGV---RR 142 Query: 124 LYADTKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEV 183 K +L + + +LS G +Q I +LS K+LI DEPT+AL Sbjct: 143 AVGVLKTVLMP-DPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLIADEPTTALDVTIQ 201 Query: 184 ETLMRILATLK-ERGVTCIFITHRLNEFFRITDSITVLRDGKVIDTLKTSE 233 +M +L LK E G+T + ITH L D + V+ G +++ E Sbjct: 202 AQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEEAPVDE 252 Score = 54.7 bits (130), Expect = 5e-09 Identities = 66/233 (28%), Positives = 102/233 (43%), Gaps = 25/233 (10%) Query: 282 IHDVSFSLRKGEVLGIAGLMGSGRT---ELVMSLFGEYGRVVRGRVFL---EGRELFIRS 335 I DVSF + +GE + G G G++ + L GR+V G+++ GR + I S Sbjct: 29 IEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGRIVEGKIYYYPEPGRRVDIMS 88 Query: 336 A-----RDAISHGISLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYIDKNKELKLCS 390 R I+ + +D L TI + E G + +E + Sbjct: 89 LDEKELRRIRGEEIAYIFQD-PSAALDPLYTIGYQVG----ETMLAHGRVRSLRE-GVRR 142 Query: 391 EYSTRLTVKTPSLHAPVDT----LSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKY 446 TV P V + LSGG +Q+ VI L PK+LI D+PT +DV + Sbjct: 143 AVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLIADEPTTALDVTIQA 202 Query: 447 EIYKLINQLVAS-GVSVILISSELEEVMGMSDRILVMCEGHATGILEREEFDQ 498 +I L+ QL G++++LI+ L V DR+ VM +A I+E D+ Sbjct: 203 QIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVM---YAGNIVEEAPVDE 252 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 74.3 bits (181), Expect = 6e-15 Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 16/230 (6%) Query: 7 LRIEHVTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNVF 66 L ++ +T L+ V F ++ GE+H + G NG+GKS+L ++ G + EG++ Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 67 LDGEEIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIF------LGREPRT-PAGTI 119 LDGE I+ E +A+ KGI + Q+ +P + + I LG + + PA Sbjct: 63 LDGESIK-ELPPEERAL-KGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPK 120 Query: 120 DWDRLYA-DTKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSAL 178 R+Y TK LD L+ + S G+++ E+ +A+ + K++ILDEP S L Sbjct: 121 IVKRMYEYATKLGLDREILNREVNV---GFSGGEKKRSELLQAMIFDPKIVILDEPDSGL 177 Query: 179 SDAEVETLMRILATLKERGVTCIFITH--RLNEFFRITDSITVLRDGKVI 226 ++ + + L++ G + ITH RL F D +TVL G V+ Sbjct: 178 DIDGLKIVAEFIKQLRDSGRGVMLITHYARLLNFVE-PDRVTVLYRGSVL 226 Score = 71.6 bits (174), Expect = 4e-14 Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 33/236 (13%) Query: 266 VEGWTVEDPERPGKVVIHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFG-EYGRVVRGRV 324 V+G T + E KVV++ V F L+ GEV + G GSG++ L + G E VV G + Sbjct: 5 VKGLTAKIGE---KVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDI 61 Query: 325 FLEGRELFIRSARDAISHGISLVPEDRKKQGLILRQTILQNMALPNMEMFSGF-GYIDKN 383 L+G + L PE+R +G+ + Q +P + + S +++K Sbjct: 62 LLDGESIK------------ELPPEERALKGIFMAQQ--DPPQIPGVRLSSLIIAFVNKR 107 Query: 384 ------------KELKLCSEYSTRLTVKTPSLHAPVDT-LSGGNQQKVVISKWLMKEPKV 430 K +K EY+T+L + L+ V+ SGG +++ + + ++ +PK+ Sbjct: 108 LGAQDLSKPADPKIVKRMYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKI 167 Query: 431 LILDDPTRGIDVGAKYEIYKLINQLVASGVSVILISSELEEVMGMS-DRILVMCEG 485 +ILD+P G+D+ + + I QL SG V+LI+ + + DR+ V+ G Sbjct: 168 VILDEPDSGLDIDGLKIVAEFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRG 223 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 73.6 bits (179), Expect = 1e-14 Identities = 61/224 (27%), Positives = 109/224 (48%), Gaps = 13/224 (5%) Query: 6 ILRIEHVTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNV 65 +L ++ + + +AL VS V +GEI L G NGAGK+T + ++G+ G++ Sbjct: 6 LLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLK--PRNGSI 63 Query: 66 FLDGEEIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIFLGREPRTPAGTIDWDRLY 125 G +I R +E+GI+ V + + P++TV EN+ R A T + Sbjct: 64 IWQGRDITGLPAFKR--VEEGISHVPEGRGIFPRLTVYENL------RVAASTRRAKEHF 115 Query: 126 ADTKALLDEFG--LDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEV 183 D+ + L S LS G+QQM+ IARAL + +L++DEP+ L+ Sbjct: 116 QDSLEQVYTIFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLA 175 Query: 184 ETLMRILATLKER-GVTCIFITHRLNEFFRITDSITVLRDGKVI 226 ++ + + L+E GVT + + + ++ D V+ G+++ Sbjct: 176 RDVIYLASRLREELGVTILLVEQNVGLSLKVADRGYVMETGRIV 219 Score = 65.1 bits (157), Expect = 4e-12 Identities = 51/202 (25%), Positives = 101/202 (50%), Gaps = 11/202 (5%) Query: 285 VSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFIRSARDAISHGI 344 VS + KGE++ + G G+G+T ++++ G + G + +GR++ A + GI Sbjct: 25 VSLRVYKGEIVALLGGNGAGKTTTLLTISGLL-KPRNGSIIWQGRDITGLPAFKRVEEGI 83 Query: 345 SLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYIDKNKELKLCSEYSTRLTVKTPSLH 404 S VPE R G+ R T+ +N+ + + + D +++ T + Sbjct: 84 SHVPEGR---GIFPRLTVYENLRVAASTRRAKEHFQDSLEQVY------TIFPILKARRS 134 Query: 405 APVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKLINQLVAS-GVSVI 463 TLSGG QQ + I++ L++ P +L++D+P+ G+ ++ L ++L GV+++ Sbjct: 135 QLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLASRLREELGVTIL 194 Query: 464 LISSELEEVMGMSDRILVMCEG 485 L+ + + ++DR VM G Sbjct: 195 LVEQNVGLSLKVADRGYVMETG 216 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 69.3 bits (168), Expect = 2e-13 Identities = 62/225 (27%), Positives = 108/225 (48%), Gaps = 25/225 (11%) Query: 19 VRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTY--EGNVFLD------GE 70 V ALD V V +GEI + GE+G GKSTL + +A + P +G++ L+ + Sbjct: 22 VNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNTVD 81 Query: 71 EIRFEQGAIRQAIEKGIAIVYQE--LALVPKMTVGENI---FLGREPRTP--AGTIDWDR 123 +R + + + K +++++Q+ AL P V + + G + R A I Sbjct: 82 LVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDHVSGEKRRVEKIAQEILKKL 141 Query: 124 LYADTKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEV 183 + +L+++ +LS G +Q + IA +L +++I DEPT+AL Sbjct: 142 MMPAPHMILEKYP---------HELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQ 192 Query: 184 ETLMRILATLKER-GVTCIFITHRLNEFFRITDSITVLRDGKVID 227 ++++L+ L+E T I ITH L I D I V+ G V++ Sbjct: 193 AQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVVE 237 Score = 66.6 bits (161), Expect = 1e-12 Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 14/242 (5%) Query: 261 EEIFSVEGWTVEDPERPGKV-VIHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRV 319 E + S+ TV R G V + V + +GE+L I G G G++ L S+ R+ Sbjct: 3 EIVLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSI----ARI 58 Query: 320 VRGRVFLEGRELFIRSARDAISHGISLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGY 379 + +E + + + L ++ K + I Q+ + + Sbjct: 59 LPSNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQ 118 Query: 380 I------DKNKELKLCSEYSTRLTVKTPS--LHAPVDTLSGGNQQKVVISKWLMKEPKVL 431 + +K + K+ E +L + P L LSGG +Q++VI+ L+ P+++ Sbjct: 119 VTDHVSGEKRRVEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRII 178 Query: 432 ILDDPTRGIDVGAKYEIYKLINQLVAS-GVSVILISSELEEVMGMSDRILVMCEGHATGI 490 I D+PT +DV + +I K++++L ++ILI+ L ++DRI VM GH + Sbjct: 179 IADEPTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVVEV 238 Query: 491 LE 492 + Sbjct: 239 AD 240 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 67.0 bits (162), Expect = 1e-12 Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 27/224 (12%) Query: 12 VTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNVF-LDGE 70 V K G L VS SV+ GEIH L G NGAGK+T +++L G+ + E V +D Sbjct: 20 VAKSVKGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPW 79 Query: 71 EIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIFLGREPRTPAGTIDWDRLYADTKA 130 FE+ ++ + + ++ ++ ++T ENI + RLY+ + Sbjct: 80 GGGFER------VKGEVGYLPEDASVYERLTGMENILF------------YARLYSGWRD 121 Query: 131 LLDEFGLDIHFSA-KVEDL-------SVGKQQMVEIARALSENAKVLILDEPTSALSDAE 182 + + + +S EDL S G ++ + + L ++++LDEPTS + Sbjct: 122 VEELVENAVFYSGLSREDLARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIA 181 Query: 183 VETLMRILATLKERGVTCIFITHRLNEFFRITDSITVLRDGKVI 226 + +IL L G + TH L I D +T++ G + Sbjct: 182 SNRIKKILRGLSREGRAILVTTHDLALAEEIADRVTIIHGGSTV 225 Score = 57.4 bits (137), Expect = 8e-10 Identities = 50/208 (24%), Positives = 104/208 (50%), Gaps = 11/208 (5%) Query: 278 GKVVIHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFIRSAR 337 G+ V+ VS S++ GE+ +AGL G+G+T + L G R G + G + + Sbjct: 26 GRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRD-SGEARVLGVDPW-GGGF 83 Query: 338 DAISHGISLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYIDKNKELKLCSEYSTRLT 397 + + + +PED + R T ++N+ L ++SG+ +++ E + +R Sbjct: 84 ERVKGEVGYLPEDAS---VYERLTGMENI-LFYARLYSGWRDVEELVENAVFYSGLSR-- 137 Query: 398 VKTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKLINQLVA 457 L S G ++++++ LM +P++++LD+PT G+D A I K++ L Sbjct: 138 ---EDLARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSR 194 Query: 458 SGVSVILISSELEEVMGMSDRILVMCEG 485 G ++++ + +L ++DR+ ++ G Sbjct: 195 EGRAILVTTHDLALAEEIADRVTIIHGG 222 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 66.6 bits (161), Expect = 1e-12 Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 20/220 (9%) Query: 6 ILRIEHVTKDFPGVR-ALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGN 64 ++R+ V +PG L VS RG I L G G GKST++++ AG+ Y G Sbjct: 3 VVRLRDVWYRYPGGGWVLRGVSLEAPRG-ITLLAGPTGGGKSTILRVAAGLATR-IYGG- 59 Query: 65 VFLDGEEIRFEQGAIRQAIEKGIAIVYQELALVPKMTVGENIFLGREPRTPAGTIDWDRL 124 +L GE +A K + + + +T E + E +G W+ Sbjct: 60 -YLRGEV---------EARGKPVLVPQDYDLFILSLTPREELEYCYEA---SGLPPWEAR 106 Query: 125 YADTKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEVE 184 + L +E G++ +V LS G++Q V IA AL+ A+VL++DEP + VE Sbjct: 107 -REAVRLAEELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVE 165 Query: 185 TLMRILATLKERGVTCIFITHRLNEFFRITDSITVLRDGK 224 +L+R+L L GV + HR++ S+ ++ DG+ Sbjct: 166 SLIRLLRRLDVEGV--VVAEHRVHYLLPAASSVYLVYDGR 203 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 65.5 bits (158), Expect = 3e-12 Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 19/205 (9%) Query: 22 LDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNVFLDGE---EIRFEQGA 78 L VSFS+ G + L G NG+GK+TL+++LAG+ G V + G +R G Sbjct: 22 LRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPS--RGRVEVCGSPPGRVRRMLGY 79 Query: 79 IRQAIEKGIAIVYQELALVPKMTVGENIFLGREPRTPAGTIDWDRLYADTKALLDEFGLD 138 + E + E+AL+ + V E + GR DW+ + A L E G+ Sbjct: 80 APASPEVDPRLKAVEVALLYRYGVSEGVAWGRR--------DWE----EVLAALGEMGVG 127 Query: 139 IHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEVETLMRILATLKERGV 198 + +LS G++++V +A L+ + +LDEP S L + + + +L +L+ R Sbjct: 128 ELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRSLRGR-A 186 Query: 199 TCIFITHRLNEFFRITDSITVLRDG 223 T ++ TH DS+ +LR+G Sbjct: 187 TIVYTTHDPLAAM-AADSVIMLREG 210 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 65.1 bits (157), Expect = 4e-12 Identities = 65/234 (27%), Positives = 105/234 (44%), Gaps = 27/234 (11%) Query: 19 VRALDDVSFSVRRGEIHGLCGENGAGKSTLMK-ILAGVYPHGTYEGNVFLDGEEIRFEQG 77 V+A+D VSFS+ RGE+ L GE+G GK+T K IL V G G VF ++ E+ Sbjct: 47 VKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATG---GRVFFKPKKEVLEEL 103 Query: 78 AIR--------------------QAIEKGIAIVYQEL--ALVPKMTVGENIFLGREPRTP 115 R + + + + IVYQ+ +L P+ T+ + + Sbjct: 104 ERRGVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSI 163 Query: 116 AGTIDWDRLYADTKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPT 175 + + + A + LS G++Q V IARA N +++ DEP Sbjct: 164 GNAREREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPV 223 Query: 176 SALSDAEVETLMRILATLKER-GVTCIFITHRLNEFFRITDSITVLRDGKVIDT 228 S L + ++ +L +E+ G + +FITH L I D I V+ GK+++T Sbjct: 224 SMLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVET 277 Score = 55.5 bits (132), Expect = 3e-09 Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 28/246 (11%) Query: 274 PERPGKVVIHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGR---- 329 P+R K V VSFS+ +GEV + G G G+T ++ + GRVF + + Sbjct: 43 PQRFVKAV-DGVSFSIARGEVFCLVGESGCGKTTTGKAIL-RLVKATGGRVFFKPKKEVL 100 Query: 330 -ELFIRSARDAISHGISLVPEDRKKQGLILR--QTILQN------------MALPNMEMF 374 EL R + + L+ R+K + R Q + Q+ L + + Sbjct: 101 EELERRGVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLI 160 Query: 375 SGFGYIDKNKELKLCSEYSTRLTVKTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILD 434 G + +E+ + +LT + + LSGG +Q+V I++ + P +++ D Sbjct: 161 HSIGNAREREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVAD 220 Query: 435 DPTRGIDVGAKYEIYKLINQLVAS-GVSVILISSELEEVMGMSDRILVMC------EGHA 487 +P +DV + EI +L+ G S++ I+ +L + DRI VM G A Sbjct: 221 EPVSMLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDA 280 Query: 488 TGILER 493 I+ER Sbjct: 281 RRIIER 286 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 65.1 bits (157), Expect = 4e-12 Identities = 62/220 (28%), Positives = 108/220 (49%), Gaps = 26/220 (11%) Query: 14 KDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVY-PHGTYEGNVFLDGEEI 72 K F G A+ VSFSV GE + G NG+GK+TL+++++GV P G G+V + G ++ Sbjct: 12 KRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSG---GSVRVCGYDV 68 Query: 73 RFEQGAIRQAIEKGIAIVYQELALVPKMTVGENI-----FLGREPRTPAGTIDWDRLYAD 127 + + + I Q+ + +MT E I LG P + Sbjct: 69 WGDGWREARGL---IGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVAR---------RE 116 Query: 128 TKALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEVETLM 187 + +L+ G + V LS G+++ + IA AL+ N +V++LDEP S L +V Sbjct: 117 ARRVLEMLGFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGL---DVRARE 173 Query: 188 RILATLKE--RGVTCIFITHRLNEFFRITDSITVLRDGKV 225 + A+L++ +G T +F +H E +D + ++ G++ Sbjct: 174 SLWASLRKAFKGRTVLFSSHDPQEAEAESDRVLIMHRGRL 213 Score = 53.1 bits (126), Expect = 2e-08 Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 16/210 (7%) Query: 278 GKVVIHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFIRSAR 337 G+ + VSFS+ GE I G GSG+T L+ + G R G V + G +++ R Sbjct: 16 GRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVL-RPSGGSVRVCGYDVWGDGWR 74 Query: 338 DAISHGISLVPEDRKKQGLILRQTILQNMALPN--MEMFSGFGYIDKNKELKLCSEYSTR 395 +A I P+D + R T + + + + + G + + L++ Sbjct: 75 EARGL-IGFAPQDPP---MARRMTGAEYITVVGGLLGLSPGVARREARRVLEMLGFEDV- 129 Query: 396 LTVKTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKLINQL 455 L V LSGG ++ + I+ L P+V++LD+P G+DV A+ ++ + + Sbjct: 130 -------LGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASLRK- 181 Query: 456 VASGVSVILISSELEEVMGMSDRILVMCEG 485 G +V+ S + +E SDR+L+M G Sbjct: 182 AFKGRTVLFSSHDPQEAEAESDRVLIMHRG 211 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 59.3 bits (142), Expect = 2e-10 Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 14/212 (6%) Query: 12 VTKDFPGVRALDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNVFLDGEE 71 ++K F A +V F+ G I G+ G NGAGK+TL+K + G+ G + ++G Sbjct: 10 LSKRFGQRYAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSA--GEILVEGVN 66 Query: 72 IRFEQGAIRQAIEKGIAIV--YQELALVPKMTVGENIFLGREPRTPAGTIDWDRLYADTK 129 R EK + + EL +VP T I L R T R+ A + Sbjct: 67 PR------SPGFEKLLPRIGYVPELPVVPLWTT-PCILLETLARLEGYTSVEARVRA--R 117 Query: 130 ALLDEFGLDIHFSAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEVETLMRI 189 L+ GL + LS G ++ V +A+A ++L+LDEP S L V + + Sbjct: 118 EALEVVGLAGECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVREL 177 Query: 190 LATLKERGVTCIFITHRLNEFFRITDSITVLR 221 L T+ G T I +H L E I + VL+ Sbjct: 178 LRTVAREGATVIVSSHILRELEDIATHVLVLK 209 Score = 50.4 bits (119), Expect = 1e-07 Identities = 45/200 (22%), Positives = 96/200 (48%), Gaps = 14/200 (7%) Query: 284 DVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFIRSAR-DAISH 342 +V F+ G +LG+ G G+G+T L+ ++ G + G + +EG + RS + + Sbjct: 22 NVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLV-KPSAGEILVEG--VNPRSPGFEKLLP 77 Query: 343 GISLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYIDKNKELKLCSEYSTRLTVKTPS 402 I VPE ++ + L + G+ + E ++ + + + Sbjct: 78 RIGYVPELP-----VVPLWTTPCILLETLARLEGYTSV----EARVRAREALEVVGLAGE 128 Query: 403 LHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKLINQLVASGVSV 462 P+ LS G +++V++++ + E ++L+LD+P G+D Y + +L+ + G +V Sbjct: 129 CETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAREGATV 188 Query: 463 ILISSELEEVMGMSDRILVM 482 I+ S L E+ ++ +LV+ Sbjct: 189 IVSSHILRELEDIATHVLVL 208 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 57.4 bits (137), Expect = 8e-10 Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 33/204 (16%) Query: 22 LDDVSFSVRRGEIHGLCGENGAGKSTLMKILAGVYPHGTYEGNVFLDGEEIRFEQGAIRQ 81 L DV+ S+ RG + + G NG+GK+TL+K+ A + ++ ++G++ Sbjct: 7 LRDVTLSIPRG-VTAILGANGSGKTTLLKLAARL----------------LKPDRGSVEG 49 Query: 82 AIEKGIAIVYQELALVPKMTVGENIFLGREPRTPAGTIDWDRLYADTKALLDEFGLDIHF 141 G A+ L + TV E++ RT G + LL E GL+ Sbjct: 50 PRRVGAALQNPYLGFLGP-TVAEDL-----ARTAGGR-------GEALKLLREAGLEYAS 96 Query: 142 SAKVEDLSVGKQQMVEIARALSENAKVLILDEPTSALSDAEVETLMRILATLKERGVTCI 201 LS+G+ +++ + A+S + +++DEPTS L + L ++A L GV + Sbjct: 97 ERSPYTLSMGEARILSVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLIARL---GVPVL 153 Query: 202 FITHRLNEFFRITDSITVLRDGKV 225 H ++ + +LRDG+V Sbjct: 154 VAGHDIDFAAAVAGWAVILRDGRV 177 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 55.5 bits (132), Expect = 3e-09 Identities = 50/212 (23%), Positives = 99/212 (46%), Gaps = 26/212 (12%) Query: 278 GKVVIHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFIRSAR 337 G+ V+ V+ R ++ I G G+G+T + ++ G + RGRVFL+G E R Sbjct: 14 GEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLI-KPARGRVFLDGFEATGRP-- 70 Query: 338 DAISHGISLVPEDRKKQGLILRQTILQNMALPNMEMFSGFGYIDKNKELKLCSEYSTR-- 395 + + VP QN + P + + +++ + L+ + R Sbjct: 71 EMVGRYAGYVP---------------QNPSAPKLSPMTVREFVETSLRLRGVTRARERAV 115 Query: 396 -----LTVKTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYK 450 L ++ L + + LS G Q+V I++ + +PK+L++D+P +D + EI + Sbjct: 116 EVLHTLGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIAR 175 Query: 451 LINQLVASGVSVILISSELEEVMGMSDRILVM 482 +I L + V++ S + ++G +D I+V+ Sbjct: 176 IIAGLARERL-VLMTSHDPSLLLGHTDIIVVI 206 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 47.4 bits (111), Expect = 8e-07 Identities = 48/211 (22%), Positives = 95/211 (45%), Gaps = 24/211 (11%) Query: 278 GKVVIHDVSFSLRKGEVLGIAGLMGSGRTELVMSLFGEYGRVVRGRVFLEGRELFIRSAR 337 G+ V+ VS +L GE + ++G GSG+T L+ G +R Sbjct: 16 GRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAG-----------------LAEPSR 58 Query: 338 DAISHGISLVPEDRKKQGLILRQTILQN--MALPNMEMFSGFGYIDKNKELKLCSEYSTR 395 +S G P R G + ++ N+E FS + + L +E Sbjct: 59 GRVSWGCPRGP--RGCVGYVGHTPMVYGDLTVWENVEFFSSL-HGGSLGDYPLAAEAWRL 115 Query: 396 LTVKTPSLHAPVDTLSGGNQQKVVISKWLMKEPKVLILDDPTRGIDVGAKYEIYKLINQL 455 L ++ H LS G ++++ + + L+ EP++L+LD+ G+D GA + +L+ Sbjct: 116 LGLEKYGSHL-ASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLLRLA 174 Query: 456 VASGVSVILISSELE-EVMGMSDRILVMCEG 485 + G+++++ + LE +G++ R+ + +G Sbjct: 175 LGEGLALLMTTPLLEPRYLGLASRVYTLQDG 205 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 503,677 Number of Sequences: 1700 Number of extensions: 23448 Number of successful extensions: 311 Number of sequences better than 1.0e-04: 40 Number of HSP's better than 0.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 125 Number of HSP's gapped (non-prelim): 107 length of query: 510 length of database: 492,079 effective HSP length: 81 effective length of query: 429 effective length of database: 354,379 effective search space: 152028591 effective search space used: 152028591 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718040|ref|YP_003873572.1| transporter [Spirochaeta thermophila DSM 6192] (401 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.144 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 364,327 Number of Sequences: 1700 Number of extensions: 15273 Number of successful extensions: 92 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92 Number of HSP's gapped (non-prelim): 0 length of query: 401 length of database: 492,079 effective HSP length: 79 effective length of query: 322 effective length of database: 357,779 effective search space: 115204838 effective search space used: 115204838 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718041|ref|YP_003873573.1| hypothetical protein STHERM_c03270 [Spirochaeta thermophila DSM 6192] (166 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 116,509 Number of Sequences: 1700 Number of extensions: 3680 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 166 length of database: 492,079 effective HSP length: 70 effective length of query: 96 effective length of database: 373,079 effective search space: 35815584 effective search space used: 35815584 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718042|ref|YP_003873574.1| methionyl-tRNA synthetase [Spirochaeta thermophila DSM 6192] (719 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601199|ref|NP_147731.1| methionyl-tRNA synthetase [Aeropyru... 390 e-110 gi|118431148|ref|NP_147408.2| tRNA-binding protein [Aeropyrum pe... 80 2e-16 gi|14601141|ref|NP_147669.1| leucyl-tRNA synthetase [Aeropyrum p... 47 2e-06 >gi|14601199|ref|NP_147731.1| methionyl-tRNA synthetase [Aeropyrum pernix K1] Length = 572 Score = 390 bits (1003), Expect = e-110 Identities = 223/576 (38%), Positives = 307/576 (53%), Gaps = 24/576 (4%) Query: 4 KRLITSALPYVNNVPHLGNLI-QVLSADVFARYCRSAGYETLYVCGTDEYGTATETRALE 62 K ++TSA PYVN+VPHLG LI VLSAD++ARY R G + ++V G+DE+GT E A + Sbjct: 3 KYVVTSAWPYVNHVPHLGTLIGSVLSADIYARYLRLRGRQVVFVSGSDEHGTPIELEARK 62 Query: 63 EGISPKELCDRFHAIHTEIYEWFEIQFDKWGRTSTPEHTRITQDIFLKLDRNGYIKERTI 122 +G+ PKEL D+ H +++ + I FD + RT +P H + KL+ NGYI + Sbjct: 63 KGVHPKELTDQVHEYDVKMWREYRISFDNYSRTESPVHKEFVMEFMKKLEENGYIFSQEE 122 Query: 123 QQLYSEKSGMFLADRYVRGTCPHCGYEDARGDQCEHCGKLLDPTELIEPRSAIDGSTPVL 182 Y E+ +FL DR+V GTCP+CGYE ARGDQC+ CG+LL PTEL PR A+ GS PV Sbjct: 123 VLPYCERDKIFLPDRFVEGTCPYCGYEKARGDQCDECGRLLHPTELKNPRCALCGSKPVY 182 Query: 183 RETKHXXXXXXXXXXXXXXWMEKASVEGRWATNAIRMTESWIRDGLRERCITRDLKWGVP 242 + T+H W+E G + + + +W+ GL+ R +TRDL WGVP Sbjct: 183 KSTRHWFIDLRRVQDRLLKWLES---HGELQDSVKKYSINWVAQGLKPRSVTRDLSWGVP 239 Query: 243 VPKPGYENKVFYVWFDAPIGYISITATY-------TDRWEEWWKNPDGVELYQFIGKDNI 295 P G E K YVWFDA +GY+S T + W+ WW + G FIGKDNI Sbjct: 240 APFKGAEGKTIYVWFDALLGYVSATKELFIMRRGDPEEWKSWWWD-SGTRTVYFIGKDNI 298 Query: 296 PFHTVIFPSXXXXXXXXXXXXXXMSSTEYLNYESGKFSKSRGVGVFGNDAKDTGIPADVW 355 PFH +I P+ +S+TEYL YE +FSKSR +GV+ ++A + PAD W Sbjct: 299 PFHAIILPALFLASHDPYVLPWRISATEYLMYEGQQFSKSRRIGVWIDEALEIA-PADYW 357 Query: 356 RFYLFYNRPETSDYTFTWKDFQEKVNGELIGNFANLVNRTLSFIHRFYQGRIPEAPVD-- 413 R+ L RPE D FTWK+F VN EL + N VNR LS + G PE P D Sbjct: 358 RWALARMRPEARDTNFTWKEFYRIVNTELNDDIGNFVNRVLSLVRSRMSGVAPE-PEDLG 416 Query: 414 --TALWGRVRELEGQITEYLERAQLRDAFRTMFALSDLGNKAFQAGEPWKTRTERPEEAE 471 RVR + E LE +++ A + ++ GN +PWK ++ EE Sbjct: 417 EHQGFVERVRRAAWAVAEDLEAIRIKRATEGILEIAREGNAYLNRTQPWKLLSQDREEGV 476 Query: 472 KLLRNLAYLVRDLAILVAPYLPATSRRILGFLGNP----PATWAQ-LGR-LEGLSEVRKP 525 + L Y V+ LA L+AP+ P + R+ LG A W + L R L G + + + Sbjct: 477 RALSAALYAVKTLAHLLAPFTPDAADRLWSMLGLAGSVHEAVWDEWLDRPLPGGARIVRV 536 Query: 526 EILFERLEDDRVEALRIRFSGTQAEREESSQPRSED 561 E LF++L DD +E + + E P D Sbjct: 537 EPLFQKLPDDFLERVDEIVEDARRRAREKRPPLLRD 572 >gi|118431148|ref|NP_147408.2| tRNA-binding protein [Aeropyrum pernix K1] Length = 116 Score = 79.7 bits (195), Expect = 2e-16 Identities = 42/99 (42%), Positives = 65/99 (65%), Gaps = 3/99 (3%) Query: 566 KVRLVVAKITEVRRHPNAEKLYIEKIDLGGRESQIVSGLVPYYKEEELLGRHVIVVENLK 625 KV L V ++ + R P+++KL +D+GG E Q+++G+ +Y EEL+GR VIVV NL+ Sbjct: 17 KVDLRVGRVVKAERLPHSKKLLKLIVDIGGEERQVLAGIAKWYSPEELVGRLVIVVANLQ 76 Query: 626 PAKLRGEMSHGMLLAAEAEDS---VEVLFADHAAPGTRV 661 P ++ GE+S GM+LAA DS V + ++ PG+RV Sbjct: 77 PKRMAGEVSQGMVLAAPCGDSEKPVLLTVSEPVEPGSRV 115 >gi|14601141|ref|NP_147669.1| leucyl-tRNA synthetase [Aeropyrum pernix K1] Length = 959 Score = 47.0 bits (110), Expect = 2e-06 Identities = 24/60 (40%), Positives = 31/60 (51%) Query: 2 KKKRLITSALPYVNNVPHLGNLIQVLSADVFARYCRSAGYETLYVCGTDEYGTATETRAL 61 ++K IT PYVN PHLG+ +L D+ ARY R GY L+ G G + AL Sbjct: 29 RRKFFITFPYPYVNAYPHLGSAFTILRVDIMARYKRMRGYNVLFPQGWHATGGPIVSSAL 88 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 736,343 Number of Sequences: 1700 Number of extensions: 33183 Number of successful extensions: 122 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113 Number of HSP's gapped (non-prelim): 3 length of query: 719 length of database: 492,079 effective HSP length: 84 effective length of query: 635 effective length of database: 349,279 effective search space: 221792165 effective search space used: 221792165 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718043|ref|YP_003873575.1| protein FemA [Spirochaeta thermophila DSM 6192] (329 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.469 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 356,124 Number of Sequences: 1700 Number of extensions: 16660 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 329 length of database: 492,079 effective HSP length: 77 effective length of query: 252 effective length of database: 361,179 effective search space: 91017108 effective search space used: 91017108 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718044|ref|YP_003873576.1| hypothetical protein STHERM_c03300 [Spirochaeta thermophila DSM 6192] (409 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 441,245 Number of Sequences: 1700 Number of extensions: 21114 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 409 length of database: 492,079 effective HSP length: 79 effective length of query: 330 effective length of database: 357,779 effective search space: 118067070 effective search space used: 118067070 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718045|ref|YP_003873577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Spirochaeta thermophila DSM 6192] (459 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 426,543 Number of Sequences: 1700 Number of extensions: 17368 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 459 length of database: 492,079 effective HSP length: 80 effective length of query: 379 effective length of database: 356,079 effective search space: 134953941 effective search space used: 134953941 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718046|ref|YP_003873578.1| hypothetical protein STHERM_c03320 [Spirochaeta thermophila DSM 6192] (318 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 328,705 Number of Sequences: 1700 Number of extensions: 14308 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 318 length of database: 492,079 effective HSP length: 77 effective length of query: 241 effective length of database: 361,179 effective search space: 87044139 effective search space used: 87044139 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718047|ref|YP_003873579.1| hypothetical protein STHERM_c03330 [Spirochaeta thermophila DSM 6192] (349 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 314,127 Number of Sequences: 1700 Number of extensions: 13874 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 349 length of database: 492,079 effective HSP length: 78 effective length of query: 271 effective length of database: 359,479 effective search space: 97418809 effective search space used: 97418809 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718048|ref|YP_003873580.1| hypothetical protein STHERM_c03340 [Spirochaeta thermophila DSM 6192] (476 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.134 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 453,531 Number of Sequences: 1700 Number of extensions: 19646 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 0 length of query: 476 length of database: 492,079 effective HSP length: 80 effective length of query: 396 effective length of database: 356,079 effective search space: 141007284 effective search space used: 141007284 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718049|ref|YP_003873581.1| hypothetical protein STHERM_c03350 [Spirochaeta thermophila DSM 6192] (182 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431316|ref|NP_147691.2| hypothetical protein APE_1056.1 [A... 101 1e-23 >gi|118431316|ref|NP_147691.2| hypothetical protein APE_1056.1 [Aeropyrum pernix K1] Length = 231 Score = 101 bits (251), Expect = 1e-23 Identities = 59/148 (39%), Positives = 78/148 (52%), Gaps = 10/148 (6%) Query: 43 AFVTLHKRGA----LRGCIGHILADRPLWEVVQEMAYESAFRDPRFPPVTGPEVPXXXXX 98 AFVTL +R LRGCIG + PL E V A ++A DPRF P++ E+ Sbjct: 60 AFVTLERRSGDGWELRGCIGVVRPVLPLVEAVVTAAVDAASSDPRFEPLSREELDRVRVE 119 Query: 99 XXXXXXXFPIA------PEEVEVGTHGLLIRKGWHSGLLLPQVPVEQGWDRETFLAHTCL 152 P+ P VEVG HGL + K ++GLLLPQV V++GWD FL C+ Sbjct: 120 VTVLGSMEPLPKKPHERPALVEVGLHGLYVEKPPYAGLLLPQVAVDEGWDPILFLTWACI 179 Query: 153 KAGLPPDAWKSPDAQLFGFTAEVFGERD 180 KAGLP W D +++ F A V+ E + Sbjct: 180 KAGLPGTCWLREDVEIYRFRAAVWRETE 207 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 160,876 Number of Sequences: 1700 Number of extensions: 5726 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 1 length of query: 182 length of database: 492,079 effective HSP length: 71 effective length of query: 111 effective length of database: 371,379 effective search space: 41223069 effective search space used: 41223069 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718050|ref|YP_003873582.1| dioxygenase [Spirochaeta thermophila DSM 6192] (293 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601616|ref|NP_148156.1| hypothetical protein APE_1771 [Aero... 57 7e-10 >gi|14601616|ref|NP_148156.1| hypothetical protein APE_1771 [Aeropyrum pernix K1] Length = 281 Score = 56.6 bits (135), Expect = 7e-10 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 2/160 (1%) Query: 54 ALIVPHATWDYVGGLLGTAFAHVVPWREHFRRVVLWGPTHREPFPSLFLPASTLFATPLG 113 A I PHA + Y G + + + R+ VVL GP H + L ++ TPLG Sbjct: 50 AYIPPHAGYMYSGPIAAHVYYDMSLGRKP-DVVVLLGPNHTGLGLAASLWDEGVWRTPLG 108 Query: 114 PLSLDLPATQEALASSTAFAVDDLSHMEEHCLEVVFPFLRSIL-PHAPILPVLVGAPLFT 172 + +D A + + S A DD H+ EH LEV PFL+ + I+P++V Sbjct: 109 EVEVDSEAGRLVVEYSGIVAPDDEGHIYEHSLEVQLPFLQYLYGGDFRIVPIVVLHQTLD 168 Query: 173 LVETLARALYLIYAAEWEHTLFVVSTNLTPFAPRKDNARR 212 + +ARA + + + + V +++L + P ++N R+ Sbjct: 169 ISIRIARAYHRLREENGVNAVLVATSDLNHYEPYEENKRK 208 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 240,444 Number of Sequences: 1700 Number of extensions: 8392 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 1 length of query: 293 length of database: 492,079 effective HSP length: 76 effective length of query: 217 effective length of database: 362,879 effective search space: 78744743 effective search space used: 78744743 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718051|ref|YP_003873583.1| fibronectin-binding protein [Spirochaeta thermophila DSM 6192] (481 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601515|ref|NP_148055.1| hypothetical protein APE_1611 [Aero... 41 6e-05 >gi|14601515|ref|NP_148055.1| hypothetical protein APE_1611 [Aeropyrum pernix K1] Length = 650 Score = 41.2 bits (95), Expect = 6e-05 Identities = 68/283 (24%), Positives = 114/283 (40%), Gaps = 31/283 (10%) Query: 141 RGEVSGERFDPWPQLMRTYEDEDPRFSVRFLDETSSSEEWFSR--MEASYLETDRGARVE 198 RGE G DP+ + R + DE F S+ +E F+ +E + E R + Sbjct: 240 RGE-RGLEADPFRRT-RLHCDEHSTFH-------SALDELFTPGGVEVEHPEVARLRKSM 290 Query: 199 KLRVDLARLLERRITTLRATLTELTSRRERIRDAERYKEYGDLIITNLWQISRGQKWIEV 258 + + LA RR LR + S + + +A R +RG+K V Sbjct: 291 EEAMKLAEEYRRRAEELRKAAEAVASAYQEVDEALR-------------SAARGEKEAPV 337 Query: 259 EDYFRGGTVRIPLDPALGPQENAERYYREHRRLLQQEQNLAARMEEVSRDLTHHERLLEQ 318 + RG TV + L + E + RL ++ L A+ E + LE+ Sbjct: 338 VEV-RGKTVLLDLGGLRVAAQRGEDAGKLILRLYREAGELEAKAERAEKAFAEARSRLEE 396 Query: 319 IPSMGEEALEALSRTFQKEARVREKDTEVPGLHVLSQGFLIIVGRNAKESDEVLRHHARG 378 ++ L +L R + R E + GFL I GR+A +++ V++ + Sbjct: 397 --AVRRARLRSLRRIIEGRKRFW---FEKYHWTITRNGFLAIGGRDAGQNESVVKRYLGD 451 Query: 379 NDLWLHVRDWPGGHVIIRSQKGKEIPHPVILDAAQLAIHFSKA 421 +D++LH D G + + + I DAA LA +S+A Sbjct: 452 DDIFLHA-DIHGAPATVLLTRRLQPGDDDIYDAAVLAAAYSRA 493 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 494,166 Number of Sequences: 1700 Number of extensions: 22244 Number of successful extensions: 74 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 2 length of query: 481 length of database: 492,079 effective HSP length: 80 effective length of query: 401 effective length of database: 356,079 effective search space: 142787679 effective search space used: 142787679 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718052|ref|YP_003873584.1| hypothetical protein STHERM_c03380 [Spirochaeta thermophila DSM 6192] (26 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.332 0.145 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,174 Number of Sequences: 1700 Number of extensions: 254 Number of successful extensions: 0 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 26 length of database: 492,079 effective HSP length: 1 effective length of query: 25 effective length of database: 490,379 effective search space: 12259475 effective search space used: 12259475 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718053|ref|YP_003873585.1| folylpolyglutamate synthase [Spirochaeta thermophila DSM 6192] (479 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 408,628 Number of Sequences: 1700 Number of extensions: 17402 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 0 length of query: 479 length of database: 492,079 effective HSP length: 80 effective length of query: 399 effective length of database: 356,079 effective search space: 142075521 effective search space used: 142075521 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718054|ref|YP_003873586.1| histidinol dehydrogenase 1 [Spirochaeta thermophila DSM 6192] (506 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 511,892 Number of Sequences: 1700 Number of extensions: 22242 Number of successful extensions: 68 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 0 length of query: 506 length of database: 492,079 effective HSP length: 81 effective length of query: 425 effective length of database: 354,379 effective search space: 150611075 effective search space used: 150611075 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718055|ref|YP_003873587.1| homocitrate synthase 2 [Spirochaeta thermophila DSM 6192] (354 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 407,635 Number of Sequences: 1700 Number of extensions: 20103 Number of successful extensions: 66 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66 Number of HSP's gapped (non-prelim): 0 length of query: 354 length of database: 492,079 effective HSP length: 78 effective length of query: 276 effective length of database: 359,479 effective search space: 99216204 effective search space used: 99216204 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718056|ref|YP_003873588.1| hypothetical protein STHERM_c03420 [Spirochaeta thermophila DSM 6192] (63 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease... 43 1e-06 >gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease ModB [Aeropyrum pernix K1] Length = 261 Score = 43.1 bits (100), Expect = 1e-06 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 1 MIAGNIPGRTQTLSLGIYQEVMMGDAEFAGLYALILFVLATG-ITAVVHVI 50 ++AGNIPGRT+TL L +Y + + D E A A+ VLA G +T VH + Sbjct: 203 VLAGNIPGRTETLPLALYNAISLADVETAS--AIYTLVLAVGLVTLGVHTL 251 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,130 Number of Sequences: 1700 Number of extensions: 2395 Number of successful extensions: 7 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 1 length of query: 63 length of database: 492,079 effective HSP length: 35 effective length of query: 28 effective length of database: 432,579 effective search space: 12112212 effective search space used: 12112212 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718057|ref|YP_003873589.1| transporter [Spirochaeta thermophila DSM 6192] (161 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease... 47 2e-07 >gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease ModB [Aeropyrum pernix K1] Length = 261 Score = 47.4 bits (111), Expect = 2e-07 Identities = 32/153 (20%), Positives = 69/153 (45%), Gaps = 3/153 (1%) Query: 9 TIVLSLKIASIATGISLLAGVVLAQVFAGKRQRGVILVEVCISVPMFLPPAVTGYFLLLL 68 ++VLSL ++I++ +++ A A + R L+ + + +PP G L+L Sbjct: 47 SLVLSLGSSTISSVLAVTLATAPAYAMARQEGRLTRLISQLHLLLLSIPPVGLGTAALIL 106 Query: 69 LGSHGPIGGVLERWLGVEIVFTQXXXXXXXXXXXXXXXFKSMKGHFESIEEDVLHAARMD 128 + P+ + E + + F+ + G F + ++ AA Sbjct: 107 FTRYPPLNSISET---LGLFFSPKAVILAQLLVTTPIAVSMLTGVFSMVPRELEEAAEAY 163 Query: 129 GADEVLVLLLVKLPMAMRGLSSSVMLAFLRAMG 161 GA + +L+ + LP+++ G+ S++ + F RA+G Sbjct: 164 GAGRLQILIRIVLPLSLPGILSALAVTFFRALG 196 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.143 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 137,204 Number of Sequences: 1700 Number of extensions: 5106 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 1 length of query: 161 length of database: 492,079 effective HSP length: 70 effective length of query: 91 effective length of database: 373,079 effective search space: 33950189 effective search space used: 33950189 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718058|ref|YP_003873590.1| transporter [Spirochaeta thermophila DSM 6192] (254 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430965|ref|NP_147102.2| molybdate ABC transporter molybdat... 43 7e-06 >gi|118430965|ref|NP_147102.2| molybdate ABC transporter molybdate-binding protein ModA precursor [Aeropyrum pernix K1] Length = 264 Score = 43.1 bits (100), Expect = 7e-06 Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 11/205 (5%) Query: 39 VDELARSWEDRSGVAVRITIGSSGALRAQIMQGAPIDVFLMGNEEEARELVKTGHADERW 98 ++E+ S+ GV V GSSG + AQ+ D+++ E A + V+ G D+ + Sbjct: 47 LEEVLSSFSRERGVNVSYVYGSSGFVLAQLELRGNGDLYVSDGWEFAVKGVEEGLLDKEY 106 Query: 99 VTPLCRNSLVVLVHTGHPVESPGSLACLLSPGMGRIAVPNLQTTASGKYLRRIFEHEGAL 158 T + L ++V G+P + SL L +A+ N + +G R+ E G Sbjct: 107 FTVVGCIRLALIVEKGNP-KGVSSLRDALERDDVTVALGNPEHVTAGVLAWRLLEELGLE 165 Query: 159 YERVR----EKFFFAETVRQALLWFQMGNADAAIVFR--SDVAGIEGVEVAHEILLVEGR 212 V+ + ++ QA + G ADAA+ F + + G + EV + Sbjct: 166 EAAVKGIGDGRVVLVDSASQAAYYVATGLADAAVTFNVYTVLMGDKVEEVYDGAVASVKA 225 Query: 213 PILQVCGLTRRGLASTRAKDLYAFL 237 P++ + R L A+DL+ F+ Sbjct: 226 PVVVALPVNRGPL----AEDLFRFV 246 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 243,350 Number of Sequences: 1700 Number of extensions: 10633 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 1 length of query: 254 length of database: 492,079 effective HSP length: 75 effective length of query: 179 effective length of database: 364,579 effective search space: 65259641 effective search space used: 65259641 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718059|ref|YP_003873591.1| hypothetical protein STHERM_c03450 [Spirochaeta thermophila DSM 6192] (101 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,930 Number of Sequences: 1700 Number of extensions: 1665 Number of successful extensions: 5 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 101 length of database: 492,079 effective HSP length: 64 effective length of query: 37 effective length of database: 383,279 effective search space: 14181323 effective search space used: 14181323 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718060|ref|YP_003873592.1| FeMo cofactor biosynthesis protein NifB [Spirochaeta thermophila DSM 6192] (423 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431072|ref|NP_147264.2| molybdenum cofactor biosynthesis p... 44 1e-05 >gi|118431072|ref|NP_147264.2| molybdenum cofactor biosynthesis protein MoaA [Aeropyrum pernix K1] Length = 367 Score = 43.5 bits (101), Expect = 1e-05 Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 23/178 (12%) Query: 30 VHLPVAPRCNIQCHYCNRKFDCVNESRPGVTSGLLDPDEACEVVDLLKERFPDLTVVGIA 89 + + V P CN+ C +C+ + ES P + G P + E D++ E L V Sbjct: 25 LRIAVTPECNLDCFFCH--MEGATESGP-MRPGSWSPVLSVEDYDIIGEAASRLGVDSFK 81 Query: 90 -GPGDPFANPDETLSTLRGVRSRHPDLLLCVATNGLALPEYVEELADLRVSHVTVTVNAV 148 G+P D + + V +R+ ++ + TNG+ LP L ++ V V+++++ Sbjct: 82 LTGGEPLIRGD--VDKIVAVLARYGEVSM--TTNGILLPLKASSLKRAGLARVNVSLHSI 137 Query: 149 HPEVGERIYPWXXXXXXXXXXXXXXXXXIDRQQEAIVSLKAKGLVVKVNTIVIPGVND 206 EV E+I + + + + GL VKVN +++ G+N+ Sbjct: 138 SEEVYEKI---------------TRRRAVKLALKGVEAALKAGLRVKVNMVLLRGLNE 180 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 423,306 Number of Sequences: 1700 Number of extensions: 18470 Number of successful extensions: 63 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 61 Number of HSP's gapped (non-prelim): 1 length of query: 423 length of database: 492,079 effective HSP length: 79 effective length of query: 344 effective length of database: 357,779 effective search space: 123075976 effective search space used: 123075976 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718061|ref|YP_003873593.1| nitrogenase associated protein N [Spirochaeta thermophila DSM 6192] (451 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 513,890 Number of Sequences: 1700 Number of extensions: 25619 Number of successful extensions: 86 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86 Number of HSP's gapped (non-prelim): 0 length of query: 451 length of database: 492,079 effective HSP length: 80 effective length of query: 371 effective length of database: 356,079 effective search space: 132105309 effective search space used: 132105309 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718062|ref|YP_003873594.1| nitrogenase iron-molybdenum cofactor biosynthesis protein NifE [Spirochaeta thermophila DSM 6192] (317 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 344,423 Number of Sequences: 1700 Number of extensions: 15739 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 0 length of query: 317 length of database: 492,079 effective HSP length: 77 effective length of query: 240 effective length of database: 361,179 effective search space: 86682960 effective search space used: 86682960 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718063|ref|YP_003873595.1| nitrogenase molybdenum-iron protein subunit beta [Spirochaeta thermophila DSM 6192] (460 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 467,961 Number of Sequences: 1700 Number of extensions: 21599 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61 Number of HSP's gapped (non-prelim): 0 length of query: 460 length of database: 492,079 effective HSP length: 80 effective length of query: 380 effective length of database: 356,079 effective search space: 135310020 effective search space used: 135310020 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718064|ref|YP_003873596.1| nitrogenase molybdenum-iron protein subunit alpha [Spirochaeta thermophila DSM 6192] (556 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 540,660 Number of Sequences: 1700 Number of extensions: 22975 Number of successful extensions: 65 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65 Number of HSP's gapped (non-prelim): 0 length of query: 556 length of database: 492,079 effective HSP length: 82 effective length of query: 474 effective length of database: 352,679 effective search space: 167169846 effective search space used: 167169846 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718065|ref|YP_003873597.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (125 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 130,827 Number of Sequences: 1700 Number of extensions: 5738 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 125 length of database: 492,079 effective HSP length: 67 effective length of query: 58 effective length of database: 378,179 effective search space: 21934382 effective search space used: 21934382 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718066|ref|YP_003873598.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (118 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.139 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 123,834 Number of Sequences: 1700 Number of extensions: 5198 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 118 length of database: 492,079 effective HSP length: 66 effective length of query: 52 effective length of database: 379,879 effective search space: 19753708 effective search space used: 19753708 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718067|ref|YP_003873599.1| nitrogenase iron protein [Spirochaeta thermophila DSM 6192] (274 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430945|ref|NP_147065.2| MRP/NBP35 family protein [Aeropyru... 42 1e-05 >gi|118430945|ref|NP_147065.2| MRP/NBP35 family protein [Aeropyrum pernix K1] Length = 309 Score = 42.4 bits (98), Expect = 1e-05 Identities = 62/271 (22%), Positives = 113/271 (41%), Gaps = 32/271 (11%) Query: 3 KVAIYG-KGGIGKSTTTQNTVAALSEMGKKVMVVGCDPKADSTRLLLG---GLHQETVLD 58 K+A+ KGG+GKS T + AAL+ G++V V D S +LG G+ + LD Sbjct: 47 KIAVISTKGGVGKSFVTASLAAALAAEGRRVGVFDADISGPSVHKMLGLQTGMGMPSQLD 106 Query: 59 TLRMEGEDVELEDIRKIGFKGTICIESGGPEPGVGCAGRGIITSINLLEQLGAFSESVGL 118 + VE+ K+ G + P V RG I + + + +L A+ + L Sbjct: 107 G---TVKPVEVPPGIKVASIGLLL-----PMDEVPLIWRGAIKT-SAIRELLAYVDWGEL 157 Query: 119 DYVFYDV---LGDVVCGGFAMPIREGKANEIYIVVSGEMMAMYAANNICKGIVKFAEAGG 175 DY+ D+ GD V I + + + E+ A ++ K V FA+ Sbjct: 158 DYLLIDLPPGTGDEVL--TITQIIPNITGFLVVTIPSEI-----AKSVVKKAVSFAKRIE 210 Query: 176 VRLGGLICNSRKVEREEDLI---------KALAERLGTQMIHFLPRDNMVQKAEINRMTV 226 + G++ N + I + +A + G +++ +P D ++++ Sbjct: 211 APVIGIVENMSYFRCSDGSIHYIFGRGAAEEIASQYGIELLGKIPIDPAIRESNDKGKIF 270 Query: 227 VEYAPDHPQAEEYRTLAKKIEENTMFVIPKP 257 P+ + E+ +A++I E + PKP Sbjct: 271 FLENPESEASREFLKIARRIIEIVEKLGPKP 301 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 281,290 Number of Sequences: 1700 Number of extensions: 12801 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 1 length of query: 274 length of database: 492,079 effective HSP length: 76 effective length of query: 198 effective length of database: 362,879 effective search space: 71850042 effective search space used: 71850042 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718068|ref|YP_003873600.1| hypothetical protein STHERM_c03540 [Spirochaeta thermophila DSM 6192] (47 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.148 0.476 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,799 Number of Sequences: 1700 Number of extensions: 1296 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 47 length of database: 492,079 effective HSP length: 20 effective length of query: 27 effective length of database: 458,079 effective search space: 12368133 effective search space used: 12368133 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718069|ref|YP_003873601.1| hypothetical protein STHERM_c03550 [Spirochaeta thermophila DSM 6192] (111 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 110,003 Number of Sequences: 1700 Number of extensions: 4125 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 111 length of database: 492,079 effective HSP length: 65 effective length of query: 46 effective length of database: 381,579 effective search space: 17552634 effective search space used: 17552634 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718070|ref|YP_003873602.1| hypothetical protein STHERM_c03560 [Spirochaeta thermophila DSM 6192] (687 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.132 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 611,537 Number of Sequences: 1700 Number of extensions: 26803 Number of successful extensions: 151 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 151 Number of HSP's gapped (non-prelim): 0 length of query: 687 length of database: 492,079 effective HSP length: 83 effective length of query: 604 effective length of database: 350,979 effective search space: 211991316 effective search space used: 211991316 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718071|ref|YP_003873603.1| hypothetical protein STHERM_c03570 [Spirochaeta thermophila DSM 6192] (178 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.142 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 126,864 Number of Sequences: 1700 Number of extensions: 3399 Number of successful extensions: 7 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 178 length of database: 492,079 effective HSP length: 71 effective length of query: 107 effective length of database: 371,379 effective search space: 39737553 effective search space used: 39737553 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718072|ref|YP_003873604.1| HTH DNA-binding protein [Spirochaeta thermophila DSM 6192] (246 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431745|ref|NP_148410.2| hypothetical protein APE_2139.1 [A... 68 2e-13 >gi|118431745|ref|NP_148410.2| hypothetical protein APE_2139.1 [Aeropyrum pernix K1] Length = 223 Score = 67.8 bits (164), Expect = 2e-13 Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 18/186 (9%) Query: 11 GDEMQLVEVVLDPGEGVRAEAGAMLYMEEGIAMDTRMEGGLLGGFKRILAGESFFITNFV 70 G +++V L+ GE + E+G+ + + I + T M GG++ G R +AG N + Sbjct: 9 GPAFTILKVELNEGESIWVESGSYMLNKGDIEVKTTMGGGIVRGLLRAVAGGESLFFNII 68 Query: 71 NTGSRRAAVAFAAPYPGKIVPLDLGALGGRFVCQKDAFLCAAAGIEIDVVFTRRLGAGFF 130 T ++ V A P G I ++LG G Q ++L +E+ G G+ Sbjct: 69 -TARSKSEVWIAPPVTGDIAAVELG--GEEVYIQDSSYLAHIGDVEV--------GVGWR 117 Query: 131 GGEGFILQ------ELSGDGWAFIHAGGTIVEKRLAPGQTLRVDTGCFVGCSPTVDYDVR 184 G +G I + + G G FI++ G + R+ PG+ + +D G FV +++R Sbjct: 118 GFKGLIAEGELVWVKAKGRGTVFINSFGALEHIRVGPGEKITIDNGHFVAIKGG-KWNIR 176 Query: 185 FVGGFR 190 GG++ Sbjct: 177 KFGGWK 182 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.145 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 289,637 Number of Sequences: 1700 Number of extensions: 13818 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 1 length of query: 246 length of database: 492,079 effective HSP length: 74 effective length of query: 172 effective length of database: 366,279 effective search space: 62999988 effective search space used: 62999988 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718073|ref|YP_003873605.1| isopentenyl-diphosphate delta-isomerase [Spirochaeta thermophila DSM 6192] (573 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601641|ref|NP_148182.1| hypothetical protein APE_1810 [Aero... 284 5e-78 >gi|14601641|ref|NP_148182.1| hypothetical protein APE_1810 [Aeropyrum pernix K1] Length = 558 Score = 284 bits (726), Expect = 5e-78 Identities = 174/442 (39%), Positives = 252/442 (57%), Gaps = 21/442 (4%) Query: 1 MQRAEALKEILRRIDGAGYKAYKDIEGAY-DFDDFVLVIDHVQGDPFAAPSRVRVRIPQR 59 M R +++ +LRRIDG GYKAYKD+ GA D + + VQGDPFA PS V V + R Sbjct: 1 MARRISIESVLRRIDGRGYKAYKDLTGASEDLGRLEIRVTRVQGDPFAPPSVVEVYV--R 58 Query: 60 VAGFPEAAYRPKSREIALRDYITRVFAREAGRFQ-RPRATGKSGVISIDRPGQEILERTS 118 P A+ + DY+ R+ +R R+ R G SG +S+ P I+ R++ Sbjct: 59 GVSPPAGAH-----PVPYADYVHRLLSRVLPRYSMRGVGEGGSGKLSVPTPSPIIIPRSA 113 Query: 119 CFVNDR-----EVELRFTVGLPAFGRRIAGRIAQEMFFEDIPALVRRAGLYRSIQGRSLV 173 R + LR VGLP+ GRR+ GR A+E+ E +P V + ++G + Sbjct: 114 VEAQPRGDGVWSLLLRVWVGLPSRGRRVLGRAARELLLERLPKAVLT--VLEGLKGGGVE 171 Query: 174 EHLKTNEDADALRAELSKAGIVAFVADGAILPRESGVSQKPLSAGTVVPFESPPSLRLEF 233 +H+ +D + +R+ L G+ AFV DG+ILPR+ G +PL VPFESPPS+R+E Sbjct: 172 QHITVWKDQEHIRSRLEDMGLYAFVGDGSILPRKCGGCWEPLE--DAVPFESPPSMRVEI 229 Query: 234 TLPNRGKITGMGIPHGVTLIVGGGYHGKSTLLNALEMGVYNHIPGDGREFCVTIPEAVKI 293 LP+ ++GMG+P GVT I G +HGK+TL A+ GV+NHIPGDGRE V+ + Sbjct: 230 ELPSGKVVSGMGLPRGVTTITGPAFHGKTTLAEAIAQGVWNHIPGDGRELVVSDHMLAYV 289 Query: 294 RAEDGRRIEKVDISPFISHLPFGKDTTSFSTEDASGSTSQAANIIEALEAGARLLFIDED 353 +E+GR + VD SPFI LP G DT F+T DASG+TS AA+I E +EAGA + DED Sbjct: 290 ESENGRWVSCVDASPFIEALPGGADTRCFTTPDASGATSIAASIQEYVEAGASGVLFDED 349 Query: 354 TSATNFMIRDHRMQELVSKDHEPITPFIDKVRLLLRDYGVSTVMVIGGSGDYFDVADRVV 413 +ATN + RD +E+ K + P D + ++ G+S + V G+ + +DR+V Sbjct: 350 QTATNIIHRDVWAEEITGK--RTVNPLSD-MAPSMKKAGLSMIAVASGAMPLLESSDRIV 406 Query: 414 CLIEYRPYEVTAKAKEIAQRYR 435 + E+R + T K E ++ R Sbjct: 407 VMDEFRARDATEKRMEASRVLR 428 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 608,384 Number of Sequences: 1700 Number of extensions: 29947 Number of successful extensions: 125 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 119 Number of HSP's gapped (non-prelim): 1 length of query: 573 length of database: 492,079 effective HSP length: 82 effective length of query: 491 effective length of database: 352,679 effective search space: 173165389 effective search space used: 173165389 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718074|ref|YP_003873606.1| ammonia permease with sensory box/GGDEF domains [Spirochaeta thermophila DSM 6192] (924 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 858,145 Number of Sequences: 1700 Number of extensions: 37276 Number of successful extensions: 139 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 139 Number of HSP's gapped (non-prelim): 0 length of query: 924 length of database: 492,079 effective HSP length: 85 effective length of query: 839 effective length of database: 347,579 effective search space: 291618781 effective search space used: 291618781 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718075|ref|YP_003873607.1| hypothetical protein STHERM_c03610 [Spirochaeta thermophila DSM 6192] (151 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 156,823 Number of Sequences: 1700 Number of extensions: 6372 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 151 length of database: 492,079 effective HSP length: 69 effective length of query: 82 effective length of database: 374,779 effective search space: 30731878 effective search space used: 30731878 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718076|ref|YP_003873608.1| chemotaxis protein CheY [Spirochaeta thermophila DSM 6192] (122 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 115,964 Number of Sequences: 1700 Number of extensions: 4386 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 122 length of database: 492,079 effective HSP length: 67 effective length of query: 55 effective length of database: 378,179 effective search space: 20799845 effective search space used: 20799845 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718077|ref|YP_003873609.1| automatic annotation [Spirochaeta thermophila DSM 6192] (158 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431490|ref|NP_147996.2| hypothetical protein APE_1520.1 [A... 77 2e-16 >gi|118431490|ref|NP_147996.2| hypothetical protein APE_1520.1 [Aeropyrum pernix K1] Length = 136 Score = 77.4 bits (189), Expect = 2e-16 Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 3/128 (2%) Query: 31 TPSRVAFINITPQIEEAVRESGVKEGLCLVNAMHITASVFINDDEPGLHQDYRDWLEELA 90 T R+ +++T ++EE + G GL +V H TA+V +N+ EP L +D +++ EL Sbjct: 12 TERRLQVLDVTGKVEEWLSTVGGVNGLLVVYVPHTTAAVAVNEAEPRLMEDIVEFIRELT 71 Query: 91 PHEPTSRYRHNRTGEDNGDAHLKRQIMGREVVVAITDGRLDFGPWEQIFYGEFDGRRPKR 150 +P ++HN + N AHL I+G V+ + GRL G W++I + E DG R + Sbjct: 72 --KPGGPWKHNLV-DVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILFVEMDGPRERT 128 Query: 151 VLVKIIGE 158 V + +GE Sbjct: 129 VNLLYLGE 136 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 187,425 Number of Sequences: 1700 Number of extensions: 8102 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 1 length of query: 158 length of database: 492,079 effective HSP length: 70 effective length of query: 88 effective length of database: 373,079 effective search space: 32830952 effective search space used: 32830952 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718078|ref|YP_003873610.1| hypothetical protein STHERM_c03640 [Spirochaeta thermophila DSM 6192] (448 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 362,189 Number of Sequences: 1700 Number of extensions: 14111 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 448 length of database: 492,079 effective HSP length: 80 effective length of query: 368 effective length of database: 356,079 effective search space: 131037072 effective search space used: 131037072 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718079|ref|YP_003873611.1| hypothetical protein STHERM_c03650 [Spirochaeta thermophila DSM 6192] (233 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 227,524 Number of Sequences: 1700 Number of extensions: 9588 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 233 length of database: 492,079 effective HSP length: 74 effective length of query: 159 effective length of database: 366,279 effective search space: 58238361 effective search space used: 58238361 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718080|ref|YP_003873612.1| HIT-like protein tag-202 [Spirochaeta thermophila DSM 6192] (114 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 116,528 Number of Sequences: 1700 Number of extensions: 4384 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 114 length of database: 492,079 effective HSP length: 66 effective length of query: 48 effective length of database: 379,879 effective search space: 18234192 effective search space used: 18234192 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718081|ref|YP_003873613.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Spirochaeta thermophila DSM 6192] (422 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600809|ref|NP_147332.1| 3-phosphoshikimate 1-carboxyvinyltr... 218 2e-58 gi|118431440|ref|NP_147921.2| 3-phosphoshikimate 1-carboxyvinylt... 158 2e-40 >gi|14600809|ref|NP_147332.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Aeropyrum pernix K1] Length = 427 Score = 218 bits (556), Expect = 2e-58 Identities = 151/410 (36%), Positives = 201/410 (49%), Gaps = 11/410 (2%) Query: 3 VSVQPGRLSGHIPVPPSKSHTIRALLVAAAAGGTSRIRSPLFSRDTRACMRAVSLLGAVV 62 V V P + G + PPSKS+T R L +A A G S +R PL S DT A + AV+LLG Sbjct: 10 VVVHPSTVEGRVEAPPSKSYTHRMLFLALLARGRSVVRRPLVSNDTLATLNAVALLGGKP 69 Query: 63 REEGADLLVEGTGGRFSVPEDVIDVENSGTTLYLAGAMAALIEGGRAVFTGDAQLRRRTA 122 R VEG R V+ SGTT+ +A +AA ++ GD L RR Sbjct: 70 RLGRGVAEVEGGEVRGGA---VVYAAGSGTTIRIAMGVAAHSAEATLLY-GDESLNRRPV 125 Query: 123 GPLLASLQDLGARAESTRGNGCAPLVIGGPLRGGSTSIACPTSQYLSALLLACPLGKGES 182 PL +L+ +GAR T GN P+ + GPLR S + S + LL GE Sbjct: 126 HPLSEALRSMGARVCDTGGN--PPVKVSGPLRRASVEVDAAISSQFATSLLIAGSRLGEF 183 Query: 183 LVEVVELNEHPYIDMTLWWLKAQGVALEREGYDRFRIPGGQSYRAFDLTIPGDYSSATFF 242 + L+ Y+D+TL L GV +EREGY FR+ G + + D +PGDYSSA+F Sbjct: 184 ELSAARLSSRGYVDITLESLSMFGVRVEREGYRLFRLRG--TPKPVDAAVPGDYSSASFM 241 Query: 243 LCAAAVTGSTLTLTNLYPDDPQGDREVLEILERMGCRVEVSPEERAVRITGGSLSATEVD 302 L A A+ G + + L P DPQ DR ++E+L MG RV V AV T G L +VD Sbjct: 242 LAAGAIAG-RVEVEGLRPVDPQPDRRIVELLRSMGARVRVEGGVVAVEST-GPLEPVDVD 299 Query: 303 MTRIPDALPALAVTACYAEGTTRLYNAAHTRLKETDRIAVMAQELSRLGARVEELPDGLL 362 + PD P AV A YA G +RL + KE+DR++ +A L+RLG L Sbjct: 300 LDGSPDLAPVAAVLAAYARGVSRLRGLERLKYKESDRLSAIAWNLARLGVEARVRGGILE 359 Query: 363 IHGPCPLTGGIASSHDDHXXXXXXXXXXXXXXXPVTIEGAEAAEVTFPEF 412 I G + GG+A S DH PV +EG ++P F Sbjct: 360 IRGG-GVEGGVARSWGDHRIAMAMAVAGLGARRPVAVEGFSRVPDSYPGF 408 >gi|118431440|ref|NP_147921.2| 3-phosphoshikimate 1-carboxyvinyltransferase [Aeropyrum pernix K1] Length = 419 Score = 158 bits (400), Expect = 2e-40 Identities = 127/422 (30%), Positives = 196/422 (46%), Gaps = 27/422 (6%) Query: 1 MEVSVQPGRLSGHIPVPPSKSHTIRALLVAAAAGGTSRIRSPLFSRDTRACMRAVSLLGA 60 M + V+P ++ G I P SK HTI AL + AGG S+I PL+SRD + AV G Sbjct: 1 MNLVVKPSQIGGEIIAPSSKGHTIAALFASLLAGGRSKISEPLYSRDVDTAIYAVRRFGG 60 Query: 61 VVREEGADLLVEGTGGRFSVPED----VIDVENSGTTLYLAGAMAALIEGGRAVFTGDAQ 116 +V++ DL+V+ S P V++ S T L + AAL G V+ GD+ Sbjct: 61 LVQKGERDLIVD------SPPRPWWPRVVNCRRSSTVLRHSIVTAALAPGISLVY-GDSH 113 Query: 117 LRRRTAGPLLASLQDLGARAESTRGNGCAPLVIGGPLRGG---STSIACPTSQYLSALLL 173 L +L+ +GA +T NG P+ + GPL G ++ + L+ALLL Sbjct: 114 TNSTPVSELAGALKKIGAEVVTT--NGRPPVAVKGPLARGCCEGETVGASDGESLAALLL 171 Query: 174 ACPLGKGESLVEVVELNEHPYIDMTLWWLKAQGVALEREGYDRFRIPGGQSYRAFDLTIP 233 A PL G ++ + H ++ + L L+ G + +G + + Y +P Sbjct: 172 ASPL-LGFAIKRAGTHSWH-HVAVALHVLRGFGAKISFDGGIYY---PDKPYGPGAYAVP 226 Query: 234 GDYSSATFFLCAAAVTGSTLTLTNLYPDDPQGDREVLEILERMGCRVEVSPEERAVRITG 293 GDY +A L A A+ G +T+ L P+DPQG++ L IL + G +++ E +V + G Sbjct: 227 GDYVNAAPLLLAGAIAG-RITVRRLDPEDPQGEKVFLNILAQAGAKLKAG--ESSVEVVG 283 Query: 294 -GSLSATEVDMTRIPDALPALAVTACYAEGTTRLYNAAHTRLKETDRIAVMAQELSRLGA 352 GSL E D++ P P LAV A YA+G + + +H RLKE + + L RL Sbjct: 284 TGSLEGFEADVSETPSLAPVLAVLAAYAKGRSVIKGISHLRLKEGGNLKPLMSNLRRLKV 343 Query: 353 RVEELPDG--LLIHGPCPLTGGIASSHDDHXXXXXXXXXXXXXXXPVTIEGAEAAEVTFP 410 + + G L ++G + GG A + D V + GA +P Sbjct: 344 KAKPRCGGDCLEVYGEGYVEGGTAKGYGDPRMTMAFAVAGLASRKGVRVTGASRYRDYYP 403 Query: 411 EF 412 F Sbjct: 404 GF 405 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 443,605 Number of Sequences: 1700 Number of extensions: 20718 Number of successful extensions: 103 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86 Number of HSP's gapped (non-prelim): 4 length of query: 422 length of database: 492,079 effective HSP length: 79 effective length of query: 343 effective length of database: 357,779 effective search space: 122718197 effective search space used: 122718197 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718082|ref|YP_003873614.1| diguanylate cyclase [Spirochaeta thermophila DSM 6192] (336 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 320,246 Number of Sequences: 1700 Number of extensions: 14143 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 336 length of database: 492,079 effective HSP length: 77 effective length of query: 259 effective length of database: 361,179 effective search space: 93545361 effective search space used: 93545361 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718083|ref|YP_003873615.1| CheC, inhibitor of MCP methylation [Spirochaeta thermophila DSM 6192] (206 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 181,234 Number of Sequences: 1700 Number of extensions: 6984 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 206 length of database: 492,079 effective HSP length: 73 effective length of query: 133 effective length of database: 367,979 effective search space: 48941207 effective search space used: 48941207 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718084|ref|YP_003873616.1| response regulator receiver protein [Spirochaeta thermophila DSM 6192] (119 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.312 0.127 0.318 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,637 Number of Sequences: 1700 Number of extensions: 2582 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 119 length of database: 492,079 effective HSP length: 66 effective length of query: 53 effective length of database: 379,879 effective search space: 20133587 effective search space used: 20133587 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718085|ref|YP_003873617.1| hypothetical protein STHERM_c03720 [Spirochaeta thermophila DSM 6192] (375 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 424,112 Number of Sequences: 1700 Number of extensions: 20416 Number of successful extensions: 66 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66 Number of HSP's gapped (non-prelim): 0 length of query: 375 length of database: 492,079 effective HSP length: 78 effective length of query: 297 effective length of database: 359,479 effective search space: 106765263 effective search space used: 106765263 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718086|ref|YP_003873618.1| hypothetical protein STHERM_c03730 [Spirochaeta thermophila DSM 6192] (233 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 252,353 Number of Sequences: 1700 Number of extensions: 11307 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 233 length of database: 492,079 effective HSP length: 74 effective length of query: 159 effective length of database: 366,279 effective search space: 58238361 effective search space used: 58238361 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718087|ref|YP_003873619.1| hypothetical protein STHERM_c03740 [Spirochaeta thermophila DSM 6192] (151 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.140 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 165,410 Number of Sequences: 1700 Number of extensions: 8165 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 151 length of database: 492,079 effective HSP length: 69 effective length of query: 82 effective length of database: 374,779 effective search space: 30731878 effective search space used: 30731878 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718088|ref|YP_003873620.1| sodium/hydrogen exchanger family protein [Spirochaeta thermophila DSM 6192] (557 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431896|ref|NP_148644.2| hypothetical protein APE_2489.1 [A... 45 4e-06 gi|14600580|ref|NP_147097.1| hypothetical protein APE_0267 [Aero... 45 4e-06 >gi|118431896|ref|NP_148644.2| hypothetical protein APE_2489.1 [Aeropyrum pernix K1] Length = 148 Score = 45.4 bits (106), Expect = 4e-06 Identities = 34/119 (28%), Positives = 56/119 (47%) Query: 426 ADVLPADRAVVPNTIRLSELLRLYAEHDWNVWAVVDAEGRYRGVVGFENLREALAEPELQ 485 +D++ + V ++ +L E+ VVD EGR RG+V ++ ++E Sbjct: 16 SDIMITEVVTVKPDDPVTRAAKLMVENLIGSVLVVDDEGRLRGIVTERDIVYVVSEAWDP 75 Query: 486 EFVIAEDILTPFPETVHPHTPLHEALRIMRRRNVDFLPVLDDRGHVLGILEERMVRHFV 544 +I+T P V P L +R M NV LPV+D++G +GI+ R V F+ Sbjct: 76 TKHRVWEIMTENPIVVRPDDDLLTVVRKMSETNVRHLPVVDEKGAPVGIISFRDVLDFL 134 >gi|14600580|ref|NP_147097.1| hypothetical protein APE_0267 [Aeropyrum pernix K1] Length = 143 Score = 45.4 bits (106), Expect = 4e-06 Identities = 28/97 (28%), Positives = 47/97 (48%) Query: 442 LSELLRLYAEHDWNVWAVVDAEGRYRGVVGFENLREALAEPELQEFVIAEDILTPFPETV 501 ++E RL AE VVD +G +G++ ++ +LA + EDI++ P Sbjct: 32 IAEAARLMAERGVGSLIVVDKQGLVKGILTERDIINSLASGKACAEGKVEDIMSRNPIVA 91 Query: 502 HPHTPLHEALRIMRRRNVDFLPVLDDRGHVLGILEER 538 P L + MR N+ +PV+D+ G LG++ R Sbjct: 92 SPDDDLEIIIEKMRDMNIRHIPVIDEDGRPLGMISVR 128 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 459,812 Number of Sequences: 1700 Number of extensions: 18264 Number of successful extensions: 106 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 102 Number of HSP's gapped (non-prelim): 5 length of query: 557 length of database: 492,079 effective HSP length: 82 effective length of query: 475 effective length of database: 352,679 effective search space: 167522525 effective search space used: 167522525 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718089|ref|YP_003873621.1| hypothetical protein STHERM_c03760 [Spirochaeta thermophila DSM 6192] (328 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.136 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 337,704 Number of Sequences: 1700 Number of extensions: 14286 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 0 length of query: 328 length of database: 492,079 effective HSP length: 77 effective length of query: 251 effective length of database: 361,179 effective search space: 90655929 effective search space used: 90655929 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718090|ref|YP_003873622.1| hypothetical protein STHERM_c03770 [Spirochaeta thermophila DSM 6192] (769 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601273|ref|NP_147808.1| CRISPR-associated helicase Cas3 [Ae... 59 4e-10 >gi|14601273|ref|NP_147808.1| CRISPR-associated helicase Cas3 [Aeropyrum pernix K1] Length = 570 Score = 58.9 bits (141), Expect = 4e-10 Identities = 88/370 (23%), Positives = 141/370 (38%), Gaps = 71/370 (19%) Query: 250 CLDAAREPQGFFSLTVPTGGGKT-------LSSFAFALTHALTHHLERVIYVLPYTSIIE 302 C A P G L PTG GKT L+SFA A R V P S+I+ Sbjct: 47 CRIAYESPGGVVFLGAPTGAGKTEVFMAPLLASFASKRPIAA-----RGFLVEPMHSLIK 101 Query: 303 QNADVLRRFVGDDAIIEHHSNYESKEEVHGGVASSDTYSEAELKRQLATENWDAPVIVTT 362 D L+ + + E H G T+ + AP+ VTT Sbjct: 102 AMVDRLKTSIETLGVSEDH-----------GETVQPTFL------------YTAPITVTT 138 Query: 363 SVQFFESLFSHRTSKNKKLHNI------------ARSVVIFDEAQTIPREHLLP--ILRA 408 +F + R + + A S +FDEA + E L +L Sbjct: 139 PDTYFYGFAASRVYRILTHEGVETGRFSMPVGLQATSYTVFDEAHLVQDEVFLSPRLLSL 198 Query: 409 LEVLVHHFGVTVVFCTATQPALNKRNDFDGIEGVREIIPDPHDLARRMERVHPQYVGLLS 468 + + G +V +AT P+ K +RE + D +E H + Sbjct: 199 VVAALARAGGLIVVSSATLPSYYKTV-------IREKLGDWR--VEEVELDHTVLSPKID 249 Query: 469 YETLVDSLAEES-----QVLCIVDTRKKARNLFSCLASRISEGRFHLSAAMCPTH----R 519 E +SL + + L +V+T K+ ++ L +R S + L ++ + Sbjct: 250 VEVKNNSLEPDDVDCNVKGLVLVNTVSKSIRVYKSLKTRCSNSKVLLLHSLFKRRDKNSK 309 Query: 520 SEVLRRIRETLSQGKSCRVVTTQLIEAGVDVDFPVVYRSIAGIDSLAQAAGRCNREGKLE 579 E+L+++ + Q V TQ++E GVD+DF +Y A IDS+ Q GR R + Sbjct: 310 IELLQKLLK--EQDNGVIAVATQVLEVGVDLDFEALYTETAPIDSVIQRLGRIGR--RRG 365 Query: 580 KGRLLVFELE 589 +G +++ E Sbjct: 366 RGYAIIYNAE 375 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 756,309 Number of Sequences: 1700 Number of extensions: 34137 Number of successful extensions: 114 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 113 Number of HSP's gapped (non-prelim): 1 length of query: 769 length of database: 492,079 effective HSP length: 84 effective length of query: 685 effective length of database: 349,279 effective search space: 239256115 effective search space used: 239256115 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718091|ref|YP_003873623.1| CRISPR-associated protein Cas5 family [Spirochaeta thermophila DSM 6192] (212 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.140 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 204,950 Number of Sequences: 1700 Number of extensions: 7500 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 212 length of database: 492,079 effective HSP length: 73 effective length of query: 139 effective length of database: 367,979 effective search space: 51149081 effective search space used: 51149081 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718092|ref|YP_003873624.1| hypothetical protein STHERM_c03790 [Spirochaeta thermophila DSM 6192] (72 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.334 0.144 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,856 Number of Sequences: 1700 Number of extensions: 1408 Number of successful extensions: 2 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 72 length of database: 492,079 effective HSP length: 43 effective length of query: 29 effective length of database: 418,979 effective search space: 12150391 effective search space used: 12150391 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718093|ref|YP_003873625.1| CRISPR-associated protein, Csd2 family [Spirochaeta thermophila DSM 6192] (291 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 267,012 Number of Sequences: 1700 Number of extensions: 10535 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 0 length of query: 291 length of database: 492,079 effective HSP length: 76 effective length of query: 215 effective length of database: 362,879 effective search space: 78018985 effective search space used: 78018985 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718094|ref|YP_003873626.1| hypothetical protein STHERM_c03810 [Spirochaeta thermophila DSM 6192] (212 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431378|ref|NP_147814.2| CRISPR-associated Cas4 family prot... 47 3e-07 >gi|118431378|ref|NP_147814.2| CRISPR-associated Cas4 family protein [Aeropyrum pernix K1] Length = 199 Score = 47.4 bits (111), Expect = 3e-07 Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 18/195 (9%) Query: 9 PISSLQHYIFCPRQCALILVEQLWEENYFTAEGRVLHTRVHA-GHVR--LREEGVQVC-- 63 P+S L+ Y +CPR + ++ +Y E L +++ HVR LR G ++ Sbjct: 3 PVSMLKEYAYCPR---VAYYMEVLRPSYRPTEPMNLSREIYSVDHVRGILRSSGFRIVKE 59 Query: 64 --SMPVRSLTYGIYGVCD-VVVINDYEYLPVEYK---RGRPKTHHADE---VQLCAQVLC 114 ++P+RS G+ GV D VVV + VE K R H Q A L Sbjct: 60 EWAVPLRSKRLGLQGVADGVVVEGSLGIIVVEAKLSVRSNRWLHTRGRHVIFQAAAYALA 119 Query: 115 VEEMKDIHISKAYLYYYKIRHRVLVEISDELRAMTKETIENVHALIAAQKVPPPVNDKTR 174 +EE + + + + +V++S LR ++++ + PPP + + Sbjct: 120 LEETRGYSVDYLAIVSLEDSKTYVVKMSPSLRRDVIRLADDMNKTLDDGLEPPPKPGR-K 178 Query: 175 CTRCSLKSVCLPSVS 189 C C + VC P V+ Sbjct: 179 CVACRFRRVCQPWVA 193 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 199,542 Number of Sequences: 1700 Number of extensions: 7416 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 1 length of query: 212 length of database: 492,079 effective HSP length: 73 effective length of query: 139 effective length of database: 367,979 effective search space: 51149081 effective search space used: 51149081 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718095|ref|YP_003873627.1| hypothetical protein STHERM_c03820 [Spirochaeta thermophila DSM 6192] (344 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431380|ref|NP_147815.2| CRISPR-associated Cas1 family prot... 77 5e-16 >gi|118431380|ref|NP_147815.2| CRISPR-associated Cas1 family protein [Aeropyrum pernix K1] Length = 327 Score = 77.4 bits (189), Expect = 5e-16 Identities = 83/293 (28%), Positives = 122/293 (41%), Gaps = 18/293 (6%) Query: 44 IVCFGNVLVSPFLLGHCGKNGISVSFFSRNGRFLARATGPTRGNVLLRREQYRIADSEER 103 I+ V +S + K GI + F +G +AR P + R A+ R Sbjct: 39 IISSSRVSISSAAVRAAAKMGIDLVFLDWDGSPVARLYPPIINKTVATRIGQFSANERLR 98 Query: 104 SLPIVRAVILAKIHNSRRVLQRAFQDHGEKIADPKGFQRAIGLLQRLKERVAQIPTI--- 160 L I ++ AKI+N + L+ + ++ G++ + LL R+A Sbjct: 99 RL-IAAELVSAKIYNQGQTLKYIARQRADERLREAGYE--VELLSGEPLRIADEDGPGFR 155 Query: 161 EEVRGIEGDASRLYFTLFDQCITSQKADFFFHERSRRPPLDRMNAILSFLYTLLYCDMIS 220 +++ IE ASR Y+ QCI R LD NA L++ Y +LY + Sbjct: 156 DKLLSIEARASRRYW----QCIAEILPGRLGFSGRDRGALDPFNAALNYGYGMLYSIVEK 211 Query: 221 ALEGVGLDPAVGFLHKDRSGRASLALDLIEELRAYLGDRIALSLVNLGQIKAEDFELLDN 280 +L VGLDP +G H ++SG+ SL LD IE RA + DRI +K E Sbjct: 212 SLLLVGLDPYLGVFHSEKSGKPSLTLDAIEPFRAPIVDRILALKAGRMYLKLE------- 264 Query: 281 GAVFLTEKGRKKVLTAYQQRKQEEITHLFLGEKIPIGLLFYVQGLLLARYIRG 333 A L K RK+V A + LG +I + VQ LA RG Sbjct: 265 -AGRLDYKSRKEVAKAVASSLSMKAAVRGLGRRIRLEDAIMVQARWLAEAFRG 316 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.143 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 323,902 Number of Sequences: 1700 Number of extensions: 13762 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 1 length of query: 344 length of database: 492,079 effective HSP length: 78 effective length of query: 266 effective length of database: 359,479 effective search space: 95621414 effective search space used: 95621414 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718096|ref|YP_003873628.1| CRISPR-associated protein Cas2 [Spirochaeta thermophila DSM 6192] (95 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.138 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,816 Number of Sequences: 1700 Number of extensions: 3443 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 95 length of database: 492,079 effective HSP length: 63 effective length of query: 32 effective length of database: 384,979 effective search space: 12319328 effective search space used: 12319328 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718097|ref|YP_003873629.1| hypothetical protein STHERM_c03840 [Spirochaeta thermophila DSM 6192] (86 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.141 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,273 Number of Sequences: 1700 Number of extensions: 3447 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 86 length of database: 492,079 effective HSP length: 55 effective length of query: 31 effective length of database: 398,579 effective search space: 12355949 effective search space used: 12355949 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718098|ref|YP_003873630.1| GTP-binding protein [Spirochaeta thermophila DSM 6192] (185 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 217,008 Number of Sequences: 1700 Number of extensions: 9563 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 185 length of database: 492,079 effective HSP length: 72 effective length of query: 113 effective length of database: 369,679 effective search space: 41773727 effective search space used: 41773727 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718099|ref|YP_003873631.1| hypothetical protein STHERM_c03860 [Spirochaeta thermophila DSM 6192] (242 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.465 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 202,977 Number of Sequences: 1700 Number of extensions: 6984 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 242 length of database: 492,079 effective HSP length: 74 effective length of query: 168 effective length of database: 366,279 effective search space: 61534872 effective search space used: 61534872 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718100|ref|YP_003873632.1| leucyl-tRNA synthetase [Spirochaeta thermophila DSM 6192] (809 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601141|ref|NP_147669.1| leucyl-tRNA synthetase [Aeropyrum p... 167 9e-43 gi|14600670|ref|NP_147189.1| isoleucyl-tRNA synthetase [Aeropyru... 84 2e-17 gi|118431600|ref|NP_148179.2| valyl-tRNA synthetase [Aeropyrum p... 75 8e-15 gi|14601199|ref|NP_147731.1| methionyl-tRNA synthetase [Aeropyru... 59 5e-10 >gi|14601141|ref|NP_147669.1| leucyl-tRNA synthetase [Aeropyrum pernix K1] Length = 959 Score = 167 bits (423), Expect = 9e-43 Identities = 225/887 (25%), Positives = 327/887 (36%), Gaps = 223/887 (25%) Query: 9 IEKKWQRYWLEHKTFSVKEDPSIPKEKRRYVLDMFPYPSAEGL-HVGHPEGYTATDIYCR 67 +E+KWQ W E + F P RR FPYP H+G DI R Sbjct: 7 VEEKWQERWREARLFEADPQPG-----RRKFFITFPYPYVNAYPHLGSAFTILRVDIMAR 61 Query: 68 YLRMRGYQVLHPMGFDSFGLPAEIYAITTGT-HPRITT--------ERNIERFRT----- 113 Y RMRGY VL P G+ + G P A+ PRI E +I RFR Sbjct: 62 YKRMRGYNVLFPQGWHATGGPIVSSALRVREGDPRIIKTLRDMGIPEEDIPRFRDPRYWV 121 Query: 114 ---------QIQSLGFSYDWDREIATH--RPEYYKWTQWMFLKMYEMGLAYMAEVPVWFC 162 ++ G S DW RE T P Y ++ +W +LK+ E G Sbjct: 122 EFFTKAWRRDLERYGMSIDWRREFYTTSLNPAYSRFIEWQYLKLREKGFV---------- 171 Query: 163 EALGTVLANEEVIQTPEGPRSERGNHPVIRKPLRQWMLKITAYADRLLEGLDKLDWPESI 222 +G HPV+ P Q K+ DR E Sbjct: 172 ---------------------GKGRHPVVWCPKEQ---KVVGDHDRPDE----------- 196 Query: 223 KTMQRNWIGRSEGADIRFPLKDHDGHI-EVFTTRPDTVFGATYMVLAPEHP-LVKEITTP 280 + G S + + DG + T RP+TVFG T + + P+ LV E+ Sbjct: 197 ------YAGISPQEAVIIKFRGRDGLVYPALTYRPETVFGVTNLWVHPDATYLVAEVDGE 250 Query: 281 EQ----REAVEAYVRQAQLKSDLERTDLAKEKTGVFTGAYAVNPFTEKEIPVWISDYILI 336 E+ +A Q LER + + G VNP +E+PV + ++ Sbjct: 251 ERWIIGEQAARELADQGHRVVILERIEGRR-----LLGRIVVNPADGREVPVLPASFVRP 305 Query: 337 TYGTGAIMAVPAHDERDW----------EFAKKFDLP----------------------I 364 GTG +M+VPAH D+ E +++ L + Sbjct: 306 DLGTGVVMSVPAHAPYDYVALMELKRRPETLREYGLEPGVVESLEPIQLIAVPRAEGLLV 365 Query: 365 VQVVSRDGKE-----EELTEAFVE-------EGISI-NSGPFSGLPTKEMKEKIIAYMEE 411 V+ V R G E E+L EA E EGI + +G FSGL E KEK++ ++EE Sbjct: 366 VEEVRRRGVESQMDREKLDEATREVYAREFYEGIMLETTGRFSGLKVAEAKEKVVEWLEE 425 Query: 412 KGIGKRAVNYRLRDWIFSRQRYWGEPIPVVHVEG----------------DGVQPVPY-- 453 +G R Y L ++ R G V VE + V + + Sbjct: 426 RGAALRI--YTLPQEVYCR---CGARTHVKIVEDQWFLLYSKPEWKALAREAVARMEFLP 480 Query: 454 ----DQLPVTLPEVESYKPTGTGE--SPLATIRDWVETSAPDGSGRKAY----------R 497 + + + T GE +PL R+WV S D + AY Sbjct: 481 GHVRRDFEAIIEALRDWAFTHKGELGTPLPWDREWVIESLSDSTIYMAYYTIAKYTQHPE 540 Query: 498 ETNTMPQWAGSCWYYLRYLDPHNDREFASREKID------------YWMPVDLYVGGAEH 545 + P+ + +L + E + R I YW P+D+ + G + Sbjct: 541 KYGVEPEMLTPEVFDYVFLGAGDPGEVSRRSGIPQGLLEEMRREFLYWYPLDMRISGKDL 600 Query: 546 AVLHLLYARFWHKVLYDLGLVNTDEPFMRLVNQGMILGEDGEKMSKSRGNVVNPDDIIEE 605 HL++ F H ++ L P VN +++ GEKMSKS+GN + ++ Sbjct: 601 IPNHLVFFIFHHTAIFPREL----WPRAIGVNGWVLVA--GEKMSKSKGNFILLRQALDW 654 Query: 606 YGADSLRMYEMFMG-----------PLEATKPWS--TKGLVGVHRFLNRVWDISEREITX 652 +GAD+ R E+ G P A S ++ L V R ER + Sbjct: 655 WGADATRWAEVLAGADSGLDDANFEPSVADSAVSLLSQWLDFVRENYGRPARREERWV-- 712 Query: 653 XXXXXXXXXXXHKTIKKVTEDTEHLRFNTAIAQMMTYINEIYK----------LERVPRS 702 + TI +VT E F TA+ + + E Y+ E + R Sbjct: 713 ---DRWFESRLNSTIARVTRLMEEANFKTALVEAWYKLQESYRWYLRRSGGEPREDLLRR 769 Query: 703 LWEPFVLIIAPYAPHIAEEMWEKLGHEGSLAYHPWPTYDEALTIDEV 749 E L+IAP+APH AEE WE +G EG + WP DE+ EV Sbjct: 770 FIEVQTLLIAPFAPHTAEEAWEAMGREGFASTASWPEPDESKISPEV 816 >gi|14600670|ref|NP_147189.1| isoleucyl-tRNA synthetase [Aeropyrum pernix K1] Length = 1064 Score = 83.6 bits (205), Expect = 2e-17 Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 20/190 (10%) Query: 9 IEKKWQRYWLEHKTFSVKEDPSIPKEKRRYVLDMFPYPSAEGLHVGHPEGYTATDIYCRY 68 +E + YW E+ + ++ S ++ Y LD PY SA+ +H+G D+ R+ Sbjct: 18 LESFVKSYWEENSIYRKVKEKSSRAPRKFYFLDGPPYASAKSIHIGTAWNKVVKDVVLRF 77 Query: 69 LRMRGYQVLHPMGFDSFGLPAEIYAITTGTHPRITTE-------------------RNIE 109 RM GY V G+D+ GLP E+ I R+ E N+E Sbjct: 78 YRMTGYNVWDKPGYDTHGLPIEV-KIEQSLGVRVKREIEEKVGVENFIAACKRFVDENME 136 Query: 110 RFRTQIQSLGFSYDWDREIATHRPEYYKWTQWMFLKMYEMGLAYMAEVPVWFCEALGTVL 169 Q + +G DW+ T+R EY + W+ K +E GL Y + +C T L Sbjct: 137 AMTRQFKEIGVFMDWENPYVTYRDEYIESGWWLVKKAWEKGLLYKGYRVLHWCPRCETTL 196 Query: 170 ANEEVIQTPE 179 A+ EV + E Sbjct: 197 ADYEVSEYRE 206 Score = 76.3 bits (186), Expect = 3e-15 Identities = 69/227 (30%), Positives = 100/227 (44%), Gaps = 27/227 (11%) Query: 423 LRDWIFSRQRYWGEPIPVVHVEGDGVQPVPYDQLPVTLPEVESYKPTGTGESPLATIRDW 482 LRDW+ SRQRYWG P+PV G Y+ + ++ E+ES G P R W Sbjct: 456 LRDWVISRQRYWGIPLPVWRCSSCG-----YEHVVGSVEELESM----GGRRPENLHRPW 506 Query: 483 ---VETSAPDGSGRKAYRETNTMPQWAGSCWYYLRYLDPHNDREFASREKIDYWMPVDLY 539 VE P G R + + W S + L DRE R K PVD Sbjct: 507 VDRVELKCP-RCGGSMKRVPDVLDVWFDSGIAFYASLGYPRDRETWERLK-----PVDFI 560 Query: 540 VGGAEHAVLHLLYARFWHKVLYDLGLVNTDE-PFMRLVNQGMILGEDGEKMSKSRGNVVN 598 V G + R W L G++ E P+ R++ G L E G +M KS GN V+ Sbjct: 561 VEGHDQ-------IRGWFFSLLRSGVIGFGETPYRRVLVHGFALDEQGREMHKSLGNYVD 613 Query: 599 PDDIIEEYGADSLRMYEMFMGPLEATKPWSTKGLVGVHRFLNRVWDI 645 +++I + D +R + + E + +S KGL + R N +W++ Sbjct: 614 FEELIAKVPRDVVRFWVLQNTVWEDLR-FSWKGLDLMRRDFNVIWNV 659 >gi|118431600|ref|NP_148179.2| valyl-tRNA synthetase [Aeropyrum pernix K1] Length = 823 Score = 74.7 bits (182), Expect = 8e-15 Identities = 59/184 (32%), Positives = 82/184 (44%), Gaps = 23/184 (12%) Query: 10 EKKWQRYWLEHKTFSVKEDPSIPKEKRRYVLDMFP-YPSAEGLHVGHPEGYTATDIYCRY 68 E+K W DP P+E V+D P YPS + HVG YT D+ RY Sbjct: 19 EEKLLSLWDAEDLHKSTLDPDDPREI--VVIDTPPPYPSGKW-HVGGAAHYTQIDMIARY 75 Query: 69 LRMRGYQVLHPMGFDSFGLPAEI-----YAITTGTHPRITTERN---------IERFRTQ 114 R++GY V+ P D GLP E+ Y + R T R +++ ++ Sbjct: 76 FRLKGYNVVAPFYADRNGLPVEVQVEKTYGVVAHEMARTTEGRERFLALCSEFLDKVESE 135 Query: 115 I----QSLGFSYDWDREIATHRPEYYKWTQWMFLKMYEMGLAYMAEVPVWFCEALGTVLA 170 I + LG +D+ RE T P Y TQ F+ ++ GL Y AE PV +C T LA Sbjct: 136 IVQLWRRLGCGFDYWRE-GTDSPRYRSMTQATFIDLWRRGLIYEAERPVRWCPRCKTTLA 194 Query: 171 NEEV 174 E+ Sbjct: 195 EAEI 198 Score = 47.0 bits (110), Expect = 2e-06 Identities = 54/229 (23%), Positives = 84/229 (36%), Gaps = 40/229 (17%) Query: 425 DWIFSRQRYWGEPIPVVHVEGDGVQPVPYDQLPVTLPEVESYKPTGTGESPLATIRDWVE 484 DW SR+R++G IP+ E G + VP P R W E Sbjct: 407 DWPISRERFYGTEIPLWTCEKCGAKLVP---------------------EPGRYYRPWAE 445 Query: 485 TSAPD-----GSGRKAYR-ETNTMPQWAGSCWYYLRYLDPHNDREFASREKIDYWMPVDL 538 D G+ R+ + ET W S L D+ F R + P Sbjct: 446 EPPWDSCPRCGAPRRYLKGETRVFDTWFDSSISPLYVTRWMWDKRFYERASRNVLRPQGQ 505 Query: 539 YVGGAEHAVLHLLYARFWHKVLYDLGLVNTDEPFMRLVN-QGMILGEDGEKMSKSRGNVV 597 ++ ++ +L L L T +P R V G+ L G M KS GNV+ Sbjct: 506 ----------DIIRTWLYYSILRVLQL--TGKPAFRWVRITGLGLDPKGRPMHKSLGNVI 553 Query: 598 NPDDIIEEYGADSLRMYEMFMGPLEATKPWSTKGLVGVHRFLNRVWDIS 646 +P+ II +YG D+ R + L + + F ++W+++ Sbjct: 554 DPEPIIAKYGGDAFRFWAAIAAKLGYDYRFDENKVKTGRNFATKLWNLA 602 >gi|14601199|ref|NP_147731.1| methionyl-tRNA synthetase [Aeropyrum pernix K1] Length = 572 Score = 58.9 bits (141), Expect = 5e-10 Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 28/198 (14%) Query: 61 ATDIYCRYLRMRGYQVLHPMGFDSFGLPAEIYAITTGTHPRITTERNIERFRTQIQSLGF 120 + DIY RYLR+RG QV+ G D G P E+ A G HP+ T++ + + ++ + Sbjct: 28 SADIYARYLRLRGRQVVFVSGSDEHGTPIELEARKKGVHPKELTDQ-VHEYDVKMWR-EY 85 Query: 121 SYDWDREIATHRPEYYKWTQWMFLKMYEMGLAYMAEVPVWFCEALGTVLANEEVIQTPE- 179 +D T P + ++ K+ E G + E + +CE L + V T Sbjct: 86 RISFDNYSRTESPVHKEFVMEFMKKLEENGYIFSQEEVLPYCERDKIFLPDRFVEGTCPY 145 Query: 180 -GPRSERGN---------HPV--------------IRKPLRQWMLKITAYADRLLEGLDK 215 G RG+ HP + K R W + + DRLL+ L+ Sbjct: 146 CGYEKARGDQCDECGRLLHPTELKNPRCALCGSKPVYKSTRHWFIDLRRVQDRLLKWLES 205 Query: 216 L-DWPESIKTMQRNWIGR 232 + +S+K NW+ + Sbjct: 206 HGELQDSVKKYSINWVAQ 223 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 874,551 Number of Sequences: 1700 Number of extensions: 42017 Number of successful extensions: 126 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97 Number of HSP's gapped (non-prelim): 17 length of query: 809 length of database: 492,079 effective HSP length: 84 effective length of query: 725 effective length of database: 349,279 effective search space: 253227275 effective search space used: 253227275 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718101|ref|YP_003873633.1| transporter [Spirochaeta thermophila DSM 6192] (327 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyru... 59 1e-10 gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum... 55 2e-09 gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 54 5e-09 >gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyrum pernix K1] Length = 314 Score = 59.3 bits (142), Expect = 1e-10 Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 8/191 (4%) Query: 79 GLSNFKFLFVSGAFGRILFNTVFYNVIFL---VTCQALGMMVAILISELRLRKLNNLLHS 135 GL N+K L + + N + V+F+ + LG + +++ +++ Sbjct: 53 GLYNYKVLVHFAKYDPMFRNALITTVVFVAVTLVVNVLGGLTLAILTFFLEERISIHYRL 112 Query: 136 LTFFPYFVSYVVVGAIVYNIF-SYEFGVFNNLLEAWGA--EPVN--VYQMPNVWVFILTF 190 L P V + Y F S G N +L G +P+N Y +P +IL F Sbjct: 113 LWLLPRMTPVAVYSLLWYYFFHSDAIGTLNRILLLAGVIDKPINWGSYMLPLGTWWILIF 172 Query: 191 LNSWKWVGYTSIIYYTTIVGIDPELYEAAEIDGASTLARIWHITVPYLKVTLLTIVLFQL 250 +N V + I++Y+ I I E AA +DGAS L I I VP ++ LL + ++Q+ Sbjct: 173 VNGLVGVSFGMIVFYSAIRSIPWEYIAAARVDGASNLVIIRRIIVPMIRWHLLFVTVWQM 232 Query: 251 GSIFKGQFDLF 261 S+ +F Sbjct: 233 LSLLTTYTHIF 243 >gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum pernix K1] Length = 288 Score = 55.1 bits (131), Expect = 2e-09 Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 17/217 (7%) Query: 39 VMLIPVTVYLLVFNYAPMAGLILAFKRYIPALGFWKSPWAGLSNFKFLFVS--GAFGRIL 96 ++L P +YL VF P +I +F+ + F K+ FL S F L Sbjct: 16 LLLSPTILYLAVFIAYP---IIDSFR-----IAFVKNGSISFEAVDFLLYSPLSEFWSAL 67 Query: 97 FNTVFYNVIFLVTCQALGMMVAILISELRLRKLNNLLHSLTFFPYFVSYVVVGAIVYNIF 156 T F I ++ + L + A+++ R R + +++ L P +S + G I Y++ Sbjct: 68 KYT-FLLAILVIPTETLLALTAVILLFKRFRGRDAVIYVLVM-PLALSDLAAGLIWYSML 125 Query: 157 SYEFGVFNNLLEAWG--AEPVNVYQMPNVWV-FILTFLNS-WKWVGYTSIIYYTTIVGID 212 + + G N LL G ++P+ + N W+ F+ +L W+ +I + I+ Sbjct: 126 TGK-GFLNKLLLNMGLISDPIIFFGYENRWLTFLAVYLAEVWRSTAIVFVILFAGAQLIN 184 Query: 213 PELYEAAEIDGASTLARIWHITVPYLKVTLLTIVLFQ 249 E++EAAE+ GAS ++ HI +P +K +L +L + Sbjct: 185 KEVFEAAEVFGASFYVKLRHILIPMIKPSLQAALLIR 221 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 53.9 bits (128), Expect = 5e-09 Identities = 57/238 (23%), Positives = 103/238 (43%), Gaps = 21/238 (8%) Query: 38 LVMLIPVTVYLLVFNYAPMAGLI---------LAFKRYIPALGFWKSPWAGLSNFKFLFV 88 LV L+P ++ +F AP + + ++Y + +SP L Sbjct: 12 LVFLLPAFTFITIFVIAPSIATVYLSLNVDGHINLEKYAEVVSE-RSPDKALIMITSRPE 70 Query: 89 SGAFGRILFNTVFYNV-IFLVTCQALGMMVAILISELRLRKLNNLLHSLTFFPYFVSYVV 147 S +G ++ N ++ + I LVT LG+ +A L L+ ++++ ++ F + VV Sbjct: 71 SPPWGALIHNIIWMALHIPLVTF--LGLFLAYL---LKYTFGSSIVKTIVFIGMVIPMVV 125 Query: 148 VGAIVYNIFSYEFGVFNNLLEAWGAEPV--NVYQMPNVWVFILTFLNSWKWVGYTSIIYY 205 G IV +F GV + +A G + + P + + L + W W G++ +Y Sbjct: 126 GGLIVRFMFDEYVGVVPLVFKALGVDFLAKTWTNYPQLSLLSLILGSVWLWTGFSLTVYS 185 Query: 206 TTIVGIDPELYEAAEIDGASTLARIWHITVPYLK-VTLLTIVLFQLGSIFKGQFDLFY 262 + I EAA IDGA W I P ++ T++ +V+ L + FD+ Y Sbjct: 186 AALGSIPSSFIEAARIDGAGHWHIFWKIVFPLVRPATIIVVVMTMLWDL--KIFDIVY 241 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.144 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 316,229 Number of Sequences: 1700 Number of extensions: 13746 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 3 length of query: 327 length of database: 492,079 effective HSP length: 77 effective length of query: 250 effective length of database: 361,179 effective search space: 90294750 effective search space used: 90294750 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718102|ref|YP_003873634.1| transporter [Spirochaeta thermophila DSM 6192] (297 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 91 5e-20 gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyru... 56 1e-09 gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum... 50 5e-08 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 90.5 bits (223), Expect = 5e-20 Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 5/214 (2%) Query: 51 GFW-FIPREFSLDAY-RILFKAPKDVLQALWISVVVAALGTITSVFVACMVAYVLIQPEF 108 G+W + F++D Y + P V S++VA T+ V A AY + F Sbjct: 51 GWWNIVDATFTMDNYIKAWSYDPYSVSGGYINSLIVALPATVIPVAAASFAAYGFSRFSF 110 Query: 109 AYKRF-FSIFIYFTAIFSGGLIPTYILMVRYLHLKNTLLALILPQ--WITAWNLFLLRNF 165 K + F + I A+ ++ L+++ L L NT +IL W AW +F ++NF Sbjct: 111 PLKSYLFLVTILLMALPQQIVVVPLFLLLKNLGLINTFPGIILVHSAWGMAWIIFFMKNF 170 Query: 166 FTEIPYSVVESARIDGAKEFTIMTRLVIPMAMPGITTIALFQILYYWNDWVQAMLYITDK 225 F +P V E+AR+DGA +F I ++V+PM++PGI + ++ Q + W+ + ++++ D Sbjct: 171 FDILPREVEEAARVDGASDFRIFYKIVLPMSLPGILSASVLQFTWVWSSFFFELIFLIDP 230 Query: 226 ALYPFQYYLYTMLHNFLSVQNAIANAGIVLPSVP 259 + + + M +L IA + +VP Sbjct: 231 SKWVITQRIANMKGTYLVDWGLIAAGSVFAMAVP 264 >gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyrum pernix K1] Length = 302 Score = 55.8 bits (133), Expect = 1e-09 Identities = 34/169 (20%), Positives = 74/169 (43%), Gaps = 25/169 (14%) Query: 72 KDVLQALWISVVVAALGTITSVFVACMVAYVLIQPEFAYKRFFSIFIYFTAIFSG----- 126 ++V++ +++ VA +T+ V+ + AY + + EF + F+ + F G Sbjct: 82 RNVVEMTLVTLTVAVGVALTATLVSLLAAYSISRMEFKGRGVFTAGLIMLHAFPGVALII 141 Query: 127 -------------GLIPTYILMVRYLHLKNTLLALILPQWITAWNLFLLRNFFTEIPYSV 173 G++ + Y+ L L + + W L + FF +IP+ + Sbjct: 142 GVYMIFRIIGDVLGVLGEEFYAIAYIILARAALEVPMAIW-------LFKGFFDKIPWEL 194 Query: 174 VESARIDGAKEFTIMTRLVIPMAMPGITTIALFQILYYWNDWVQAMLYI 222 SA +DGA + +++P+ PGI + +F L W +++ +++ Sbjct: 195 EWSALVDGASRVRVWWSILVPLVKPGIAAVLIFTFLAGWEEFIYFYVFL 243 >gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum pernix K1] Length = 270 Score = 50.4 bits (119), Expect = 5e-08 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 13/171 (7%) Query: 73 DVLQALWI---------SVVVAALGTITSVFVACMVAYVLIQPEFAYKRFFSIFIYFTAI 123 D ++ LWI SV V A+ S + Y L + F + + I T + Sbjct: 55 DHVKTLWILGAGEAFLRSVAVGAMTVGISFLLGLPGGYALARYVFPGRDAVKLAIIATRM 114 Query: 124 FSGGLIPTYILMVRY-LHLKNTLLALILPQWITA--WNLFLLRNFFTEIPYSVVESARID 180 F +I +L + L L +TL+ L L A + + + + F IP + E+ I Sbjct: 115 FPIIVISVSLLKTFFNLGLNDTLIGLALAHTAMALPFVVIITGSIFGGIPRDLEEAGMIF 174 Query: 181 GAKEFTIMTRLVIPMAMPGITTIALFQILYYWND-WVQAMLYITDKALYPF 230 G + R+ +P+A PG+T +F L WN+ ++ ++L + ++ L F Sbjct: 175 GLSSIMVFLRITLPLAAPGLTAAGMFTFLLSWNEVFMASVLTLVNRTLPAF 225 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.332 0.144 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 239,227 Number of Sequences: 1700 Number of extensions: 8344 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 4 length of query: 297 length of database: 492,079 effective HSP length: 76 effective length of query: 221 effective length of database: 362,879 effective search space: 80196259 effective search space used: 80196259 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718103|ref|YP_003873635.1| ABC transporter substrate-binding protein [Spirochaeta thermophila DSM 6192] (517 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 539,642 Number of Sequences: 1700 Number of extensions: 23969 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 517 length of database: 492,079 effective HSP length: 81 effective length of query: 436 effective length of database: 354,379 effective search space: 154509244 effective search space used: 154509244 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718104|ref|YP_003873636.1| AraC family transcriptional regulator [Spirochaeta thermophila DSM 6192] (738 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 714,951 Number of Sequences: 1700 Number of extensions: 31817 Number of successful extensions: 96 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96 Number of HSP's gapped (non-prelim): 0 length of query: 738 length of database: 492,079 effective HSP length: 84 effective length of query: 654 effective length of database: 349,279 effective search space: 228428466 effective search space used: 228428466 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718105|ref|YP_003873637.1| beta-galactosidase [Spirochaeta thermophila DSM 6192] (709 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.476 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 835,078 Number of Sequences: 1700 Number of extensions: 41479 Number of successful extensions: 119 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 119 Number of HSP's gapped (non-prelim): 0 length of query: 709 length of database: 492,079 effective HSP length: 83 effective length of query: 626 effective length of database: 350,979 effective search space: 219712854 effective search space used: 219712854 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718106|ref|YP_003873638.1| UDP-glucose 4-epimerase [Spirochaeta thermophila DSM 6192] (324 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601230|ref|NP_147763.1| dTDP-glucose 4,6-dehydratase [Aerop... 94 4e-21 gi|118431352|ref|NP_147762.2| dTDP-4-dehydrorhamnose reductase [... 45 2e-06 >gi|14601230|ref|NP_147763.1| dTDP-glucose 4,6-dehydratase [Aeropyrum pernix K1] Length = 330 Score = 94.4 bits (233), Expect = 4e-21 Identities = 90/345 (26%), Positives = 149/345 (43%), Gaps = 43/345 (12%) Query: 1 MRFVLTGGAGYIGSHVYR-LLKERGHEVVVYDNLSHGHR-----EAVEPADLRVGDLHDT 54 MR ++TGGAG+IGS R ++ EV+VYD L++ R + ++ GD+ D Sbjct: 1 MRVLVTGGAGFIGSSFVRYIVNTTDWEVLVYDKLTYAGRLENLHDVIDRIGFMRGDIADE 60 Query: 55 ETLREVLLSFKPDVVMHFAAFIEVGISTERPLEFFENNTVGTIRLVQTM-MHTGVHHFIF 113 E VL F+PDVV++FAA V S P F N +G +++ + + Sbjct: 61 EQFGRVLTEFEPDVVVNFAAETHVDRSINEPAPFMRTNIIGVFTILEAIRKRIDQIVLLH 120 Query: 114 SSTAAVYGHPEKI--PIPEDARLTPVNPYGSSKVMVEEFLRSLSEWSPFRYVAIRYFNAA 171 ST VYG E L P +PY +SK + +++ +Y +R N Sbjct: 121 VSTDEVYGDLWNTGKEATESDPLNPSSPYSASKASGDLLIKAYGRTYGLKYRIVRPCNNY 180 Query: 172 GAAEDGSIGEAHDPETHLIP-LILKAAKGERPHITIFGTDFPTPDGTAIRDYIHVDDXXX 230 G + LIP I++ G+ P I+G DG+ IRD+++V+D Sbjct: 181 G---------PYQHVEKLIPRTIIRILHGKPP--VIYG------DGSQIRDWLYVEDTAR 223 Query: 231 XXXXXXXXXMDGGESQALNCGYSRGYSVREVIETAKKVTG--RDFPVIEGDRRAGDPPAL 288 +DG + N +V++++ + G RD+ ++ G R G+ Sbjct: 224 AIHVVLEKGVDG---EIYNVCGGMASTVKDIVVNILESMGKPRDY-LVYGKSRPGEDRRY 279 Query: 289 VADSSRMRTILGWKP-------TRDDLAYIIKTAWNWE--LNRRY 324 ++R LGW P + + + I+ W W L++RY Sbjct: 280 AMKCDKIRN-LGWAPHVTLKEGLKITVKWYIENRWWWRPLLDKRY 323 >gi|118431352|ref|NP_147762.2| dTDP-4-dehydrorhamnose reductase [Aeropyrum pernix K1] Length = 300 Score = 45.4 bits (106), Expect = 2e-06 Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 6/177 (3%) Query: 1 MRFVLTGGAGYIGSHVYRLLKERGHEVVVYDNLSHGHREAVEPADLRVGDLHDTETLREV 60 M+ ++TGG G +G ++ + L ++G+ V Y + + A +L D L ++ Sbjct: 1 MKLLVTGGTGLLGYNLVQQLLKKGYSV--YPTYNKNTPFKLAGARWSKVNLEDPSQLTQL 58 Query: 61 LLSFKPDVVMHFAAFIEVGISTERPLEFFENNTVGTIRLVQTMMHTGVHHFIFSSTAAVY 120 KPD V+H AA+ +V + N + ++ + + G I+ ST V+ Sbjct: 59 FRDIKPDAVIHTAAYTDVDGCELHRERAYRINFLASMTVARLAARHG-SLLIYVSTDYVF 117 Query: 121 GHPEKIPIPEDARLTPVNPYGSSKVMVEEFLRSLSEWSPFRYVAIRYFNAAGAAEDG 177 + + E+A P+N YG SK++ E + +LS + +R G + G Sbjct: 118 DGDKGMYREEEAP-NPINYYGLSKLLGE--VATLSAMDKENVLVVRVSGLYGYSPTG 171 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 347,956 Number of Sequences: 1700 Number of extensions: 15324 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 2 length of query: 324 length of database: 492,079 effective HSP length: 77 effective length of query: 247 effective length of database: 361,179 effective search space: 89211213 effective search space used: 89211213 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718107|ref|YP_003873639.1| 3-isopropylmalate dehydrogenase [Spirochaeta thermophila DSM 6192] (357 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431155|ref|NP_147421.2| isocitrate dehydrogenase [Aeropyru... 92 3e-20 >gi|118431155|ref|NP_147421.2| isocitrate dehydrogenase [Aeropyrum pernix K1] Length = 432 Score = 91.7 bits (226), Expect = 3e-20 Identities = 88/355 (24%), Positives = 148/355 (41%), Gaps = 40/355 (11%) Query: 6 IAVIPGDGTGPEVVAEGVKVLKAAAA-TYGFKLDLTYFDY--GGERYLKTGKIISDEEVQ 62 +A I GDG GPEVV +KV+ AA YG + +++ G K G+++ ++ Sbjct: 35 VAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLE 94 Query: 63 ELRHFDAIYLGAIGHPDVKPGILETGLLLKIRFDLDQYINLRPVKLYPGVDCPLKDKGPE 122 +R G + P G L + IR LD Y N+RPV+ Y P K + Sbjct: 95 GIRLARVALKGPLETP---VGTGYRSLNVAIRQALDLYANIRPVRYYGQ---PAPHKYAD 148 Query: 123 DIDFVVVRENTGGIYTG--------HGGVTRKGTPDEIATQVMVYDRRTVDRCLKFAFEL 174 +D V+ RENT +Y G R+ +E + V +FA Sbjct: 149 RVDMVIFRENTEDVYAGIEWPHDSPEAARIRRFLAEEFGISIREDAGIGVKPISRFATRR 208 Query: 175 KKRRNAE-SEKSRSKPIHLVHKRNVLTHCGDLWYRAFEEMGADDY-------PDIPRDYM 226 R E + ++ + + ++HK N++ + + R E+ + + ++ Y Sbjct: 209 LMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYG 268 Query: 227 HV-------------DATTMWFVKNPEWFDVLVTENLFGDIITDLXXXXXXXXXXXXXXX 273 V D + P + V+V NL GD I+D Sbjct: 269 GVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMN 328 Query: 274 XXPEGVSMFEPIGGSAPKYTGKKMINPLAAIEAGRMML-DFLGEHEAAKAIEKAV 327 +G+++ EP+ G+APKY GK +INP A I + +++ +F+G E +E A+ Sbjct: 329 MG-DGIAVAEPVHGTAPKYAGKDLINPSAEILSASLLIGEFMGWREVKSIVEYAI 382 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 368,020 Number of Sequences: 1700 Number of extensions: 16666 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 1 length of query: 357 length of database: 492,079 effective HSP length: 78 effective length of query: 279 effective length of database: 359,479 effective search space: 100294641 effective search space used: 100294641 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718108|ref|YP_003873640.1| arabinogalactan endo-1,4-beta-galactosidase [Spirochaeta thermophila DSM 6192] (384 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.133 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 398,182 Number of Sequences: 1700 Number of extensions: 17513 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 384 length of database: 492,079 effective HSP length: 78 effective length of query: 306 effective length of database: 359,479 effective search space: 110000574 effective search space used: 110000574 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718109|ref|YP_003873641.1| alpha-galactosidase [Spirochaeta thermophila DSM 6192] (580 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 662,514 Number of Sequences: 1700 Number of extensions: 32254 Number of successful extensions: 100 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100 Number of HSP's gapped (non-prelim): 0 length of query: 580 length of database: 492,079 effective HSP length: 82 effective length of query: 498 effective length of database: 352,679 effective search space: 175634142 effective search space used: 175634142 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718110|ref|YP_003873642.1| galactose-1-phosphate uridylyltransferase [Spirochaeta thermophila DSM 6192] (324 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 346,579 Number of Sequences: 1700 Number of extensions: 15318 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 0 length of query: 324 length of database: 492,079 effective HSP length: 77 effective length of query: 247 effective length of database: 361,179 effective search space: 89211213 effective search space used: 89211213 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718111|ref|YP_003873643.1| galactokinase [Spirochaeta thermophila DSM 6192] (350 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602065|ref|NP_148611.1| mevalonate kinase [Aeropyrum pernix... 56 1e-09 >gi|14602065|ref|NP_148611.1| mevalonate kinase [Aeropyrum pernix K1] Length = 324 Score = 56.2 bits (134), Expect = 1e-09 Identities = 77/295 (26%), Positives = 117/295 (39%), Gaps = 41/295 (13%) Query: 2 RFRAPGRVNIIGEHTDYNDGFVLPFAIDRWIEVEVEPSDRWVVW-SERTGEEVVFSPSER 60 R APG+V I+GEH + AI R + V V + +V S G P + Sbjct: 6 RASAPGKVIIVGEHFVVRGSLAIVAAIGRRLRVTVRSGGKGIVLESSMLGRHSAPLPGQG 65 Query: 61 RGD-----WSDYVAGVVWALERRGLSLRPARVLVRATLPDGAGLSSSAALEVATGAAVCA 115 Y+A V+ +L RG S+ P +LV + +P AGL SSAA VA + A Sbjct: 66 AAAKVSPVLEPYIA-VLRSLAARGYSVVPHTILVESGIPPRAGLGSSAASMVAYALSYSA 124 Query: 116 SSGYDPDRDLLVEAAWEAENEFVGMRCGIMDQFVVAHGREGHALLLDTRTREFRLVPISL 175 G + L A E E G G+ D + G +L R + L Sbjct: 125 MHGDPLSAEDLYSVAMEGEKIAHGKPSGV-DVTIAVRG----GVLAYRRGENPVDIRPGL 179 Query: 176 EGAEFFLVNSGVKHELASSGYNTRRA--ECAAVLERLGKGSFREVRPEEVEGLPEPLRRR 233 G + ++GV+ TR ++ + LG+ S R ++ + R Sbjct: 180 TGVTLLVADTGVER-------RTRDVVEHVLSIADALGEASTYIYRAADL------IARE 226 Query: 234 ARHVLSENERVLRTVEALERGDAAEVGRLLSASHASLRDDYEVSCEEIDWLVERL 288 A H A+E+GDA +G +++A+ L S EI+ LV R+ Sbjct: 227 ALH-------------AIEKGDAERLGLIMNAAQ-GLLSSLGASSLEIETLVYRM 267 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 345,379 Number of Sequences: 1700 Number of extensions: 15626 Number of successful extensions: 68 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 66 Number of HSP's gapped (non-prelim): 1 length of query: 350 length of database: 492,079 effective HSP length: 78 effective length of query: 272 effective length of database: 359,479 effective search space: 97778288 effective search space used: 97778288 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718112|ref|YP_003873644.1| glycoside hydrolase family protein [Spirochaeta thermophila DSM 6192] (756 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 840,213 Number of Sequences: 1700 Number of extensions: 40516 Number of successful extensions: 100 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100 Number of HSP's gapped (non-prelim): 0 length of query: 756 length of database: 492,079 effective HSP length: 84 effective length of query: 672 effective length of database: 349,279 effective search space: 234715488 effective search space used: 234715488 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718113|ref|YP_003873645.1| glucan 1,4-beta-glucosidase [Spirochaeta thermophila DSM 6192] (952 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,057,081 Number of Sequences: 1700 Number of extensions: 51147 Number of successful extensions: 125 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 125 Number of HSP's gapped (non-prelim): 0 length of query: 952 length of database: 492,079 effective HSP length: 86 effective length of query: 866 effective length of database: 345,879 effective search space: 299531214 effective search space used: 299531214 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718114|ref|YP_003873646.1| AraC family transcriptional regulator [Spirochaeta thermophila DSM 6192] (320 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.144 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 343,572 Number of Sequences: 1700 Number of extensions: 15487 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 0 length of query: 320 length of database: 492,079 effective HSP length: 77 effective length of query: 243 effective length of database: 361,179 effective search space: 87766497 effective search space used: 87766497 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718115|ref|YP_003873647.1| transporter [Spirochaeta thermophila DSM 6192] (318 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum... 62 2e-11 gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyru... 55 3e-09 gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 52 3e-08 >gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum pernix K1] Length = 288 Score = 62.0 bits (149), Expect = 2e-11 Identities = 45/174 (25%), Positives = 86/174 (49%), Gaps = 14/174 (8%) Query: 76 FIILFEDPKFWEVMRNTLAMSLLGLAFGFTLPIVLALFLNEIRHMLFKR-----VIQTIT 130 F++ +FW ++ T +++L +P L L + +LFKR + + Sbjct: 54 FLLYSPLSEFWSALKYTFLLAIL------VIPTETLLALTAVI-LLFKRFRGRDAVIYVL 106 Query: 131 YLPHFLSWVIVASLVFQMLGPSGPLNEFLLSLGVVKEPVPFLTKPHYF--WWVVTFADVW 188 +P LS + + + ML G LN+ LL++G++ +P+ F + + + V A+VW Sbjct: 107 VMPLALSDLAAGLIWYSMLTGKGFLNKLLLNMGLISDPIIFFGYENRWLTFLAVYLAEVW 166 Query: 189 KEIGWNSIIFLAAIAGIDPELYEAATMDGAGRFRKMWHITLPGIMPTVIVILIM 242 + +I A I+ E++EAA + GA + K+ HI +P I P++ L++ Sbjct: 167 RSTAIVFVILFAGAQLINKEVFEAAEVFGASFYVKLRHILIPMIKPSLQAALLI 220 >gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyrum pernix K1] Length = 314 Score = 54.7 bits (130), Expect = 3e-09 Identities = 69/281 (24%), Positives = 122/281 (43%), Gaps = 17/281 (6%) Query: 36 PFVLWVIVFRYLPLW--GWTMAFQDYKPGLPFFQQKWVGLKYFIILFEDPKFWEVMRNTL 93 P +L VI F +LPL +T + + VGL + +L K+ + RN L Sbjct: 15 PALLIVITFFFLPLLLTVYTSFTNMRNWNVDAYLFDIVGLYNYKVLVHFAKYDPMFRNAL 74 Query: 94 AMSLLGLAFGFTLPIVLALFLNEIRHMLFKRV---IQTITYLPHFLSWVIVASLVFQMLG 150 +++ +A + ++ L L + L +R+ + + LP ++ V V SL++ Sbjct: 75 ITTVVFVAVTLVVNVLGGLTLAILTFFLEERISIHYRLLWLLPR-MTPVAVYSLLWYYFF 133 Query: 151 PS---GPLNEFLLSLGVVKEPVPF--LTKPHYFWWVVTFADVWKEIGWNSIIFLAAIAGI 205 S G LN LL GV+ +P+ + P WW++ F + + + I+F +AI I Sbjct: 134 HSDAIGTLNRILLLAGVIDKPINWGSYMLPLGTWWILIFVNGLVGVSFGMIVFYSAIRSI 193 Query: 206 DPELYEAATMDGAGRFRKMWHITLPGIMPTVIVILIMSIGNLINIGFEKQFLLRT--PLT 263 E AA +DGA + I +P I ++ + + + +L+ + FLL + Sbjct: 194 PWEYIAAARVDGASNLVIIRRIIVPMIRWHLLFVTVWQMLSLLTT-YTHIFLLYEWGVVD 252 Query: 264 KEYADVLDLYVLDYG---IGSGRYALGTAAGIFKSVVSLIL 301 + + L V + +G R L AA V+ IL Sbjct: 253 RTWGQTWSLLVFNLAFLPVGELRQGLAAAAATVLVVIGAIL 293 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 51.6 bits (122), Expect = 3e-08 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 2/154 (1%) Query: 93 LAMSLLGLAFGFTLPIVLALFLNEIRHMLF-KRVIQTITYLPHFLSWVIVASLVFQMLGP 151 L +++ +A L L LFL + F +++TI ++ + V+ +V M Sbjct: 77 LIHNIIWMALHIPLVTFLGLFLAYLLKYTFGSSIVKTIVFIGMVIPMVVGGLIVRFMFDE 136 Query: 152 S-GPLNEFLLSLGVVKEPVPFLTKPHYFWWVVTFADVWKEIGWNSIIFLAAIAGIDPELY 210 G + +LGV + P + VW G++ ++ AA+ I Sbjct: 137 YVGVVPLVFKALGVDFLAKTWTNYPQLSLLSLILGSVWLWTGFSLTVYSAALGSIPSSFI 196 Query: 211 EAATMDGAGRFRKMWHITLPGIMPTVIVILIMSI 244 EAA +DGAG + W I P + P I++++M++ Sbjct: 197 EAARIDGAGHWHIFWKIVFPLVRPATIIVVVMTM 230 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.144 0.468 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 329,659 Number of Sequences: 1700 Number of extensions: 14734 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 3 length of query: 318 length of database: 492,079 effective HSP length: 77 effective length of query: 241 effective length of database: 361,179 effective search space: 87044139 effective search space used: 87044139 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718116|ref|YP_003873648.1| transporter [Spirochaeta thermophila DSM 6192] (308 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 96 1e-21 gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyru... 55 2e-09 gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum... 50 5e-08 gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease... 44 7e-06 gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyru... 41 3e-05 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 95.5 bits (236), Expect = 1e-21 Identities = 76/285 (26%), Positives = 139/285 (48%), Gaps = 42/285 (14%) Query: 36 LYPFLNVLAISLNDSVDT-VRGGITIFPRKFTLENYAYLFSYP--SVVRGAVMSVLRTAV 92 L PF+ + +S+ + V+G I FT++NY +SY SV G + S++ Sbjct: 30 LLPFIGLFMVSVRPYGEVIVKGWWNIVDATFTMDNYIKAWSYDPYSVSGGYINSLIVALP 89 Query: 93 GTVTGLVSTAMVAYAISRKDFFARR--FVTGIFVMTMYISAGLIPDYMLIRSLGLINNFL 150 TV + + + AY SR F + F+ I +M + ++P ++L+++LGLIN F Sbjct: 90 ATVIPVAAASFAAYGFSRFSFPLKSYLFLVTILLMALPQQIVVVPLFLLLKNLGLINTF- 148 Query: 151 VYILPGLI-------SAFNVIVLRSYIEGLPYELQESAKIDGANDFVIFSRVVMPLCLPV 203 PG+I A+ + ++++ + LP E++E+A++DGA+DF IF ++V+P+ LP Sbjct: 149 ----PGIILVHSAWGMAWIIFFMKNFFDILPREVEEAARVDGASDFRIFYKIVLPMSLPG 204 Query: 204 LATIALFIAVGHWNSWFDTYLYA-SSNKYLTTLQFELQKILTNVQSQAAASAQDIYSYAL 262 + + ++ W+S+F ++ +K++ T Q A+ + Y Sbjct: 205 ILSASVLQFTWVWSSFFFELIFLIDPSKWVIT--------------QRIANMKGTY---- 246 Query: 263 TEQARRVSPESIRMAMTIVATVPILCVYPFLQKYFTRGLVLGALK 307 + + A ++ A L VY LQ+Y+ RG V A K Sbjct: 247 ------LVDWGLIAAGSVFAMAVPLAVYMLLQRYYIRGFVGWAAK 285 >gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyrum pernix K1] Length = 302 Score = 55.5 bits (132), Expect = 2e-09 Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 15/186 (8%) Query: 88 LRTAVGT-VTGLVSTAMVAYAISRKDFFARR-FVTGIFVMTMYISAGLIPD-YMLIRSLG 144 L AVG +T + + + AY+ISR +F R F G+ ++ + LI YM+ R +G Sbjct: 92 LTVAVGVALTATLVSLLAAYSISRMEFKGRGVFTAGLIMLHAFPGVALIIGVYMIFRIIG 151 Query: 145 LINNFL---VYILPGLISA-------FNVIVLRSYIEGLPYELQESAKIDGANDFVIFSR 194 + L Y + +I A + + + + + +P+EL+ SA +DGA+ ++ Sbjct: 152 DVLGVLGEEFYAIAYIILARAALEVPMAIWLFKGFFDKIPWELEWSALVDGASRVRVWWS 211 Query: 195 VVMPLCLPVLATIALFIAVGHWNS--WFDTYLYASSNKYLTTLQFELQKILTNVQSQAAA 252 +++PL P +A + +F + W +F +L L T E+ N Q A Sbjct: 212 ILVPLVKPGIAAVLIFTFLAGWEEFIYFYVFLKPFGIDSLPTFIEEIVAAAENYQLTIIA 271 Query: 253 SAQDIY 258 +A Y Sbjct: 272 AAGTFY 277 >gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum pernix K1] Length = 270 Score = 50.4 bits (119), Expect = 5e-08 Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 19/184 (10%) Query: 60 IFPRKFTLENYAYLFSYPSVVRGAVMSVLRT-AVGTVTGLVSTAMV---AYAISRKDFFA 115 I FTL++ L+ + GA + LR+ AVG +T +S + YA++R F Sbjct: 47 ILTTSFTLDHVKTLW-----ILGAGEAFLRSVAVGAMTVGISFLLGLPGGYALARYVFPG 101 Query: 116 RRFVTGIFVMT-----MYISAGLIPDYMLIRSLGLINNFLVYILPGLISA--FNVIVLRS 168 R V + T + IS L+ + +LGL + + L A F VI+ S Sbjct: 102 RDAVKLAIIATRMFPIIVISVSLLKTFF---NLGLNDTLIGLALAHTAMALPFVVIITGS 158 Query: 169 YIEGLPYELQESAKIDGANDFVIFSRVVMPLCLPVLATIALFIAVGHWNSWFDTYLYASS 228 G+P +L+E+ I G + ++F R+ +PL P L +F + WN F + Sbjct: 159 IFGGIPRDLEEAGMIFGLSSIMVFLRITLPLAAPGLTAAGMFTFLLSWNEVFMASVLTLV 218 Query: 229 NKYL 232 N+ L Sbjct: 219 NRTL 222 >gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease ModB [Aeropyrum pernix K1] Length = 261 Score = 43.5 bits (101), Expect = 7e-06 Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 17/155 (10%) Query: 81 RGAVMSVLRTAVGTVTGLVSTAMVAYAISRKDFFARRFVTGIFVMTMYI------SAGLI 134 R V+S+ + + +V + AYA++R++ R ++ + ++ + I +A LI Sbjct: 46 RSLVLSLGSSTISSVLAVTLATAPAYAMARQEGRLTRLISQLHLLLLSIPPVGLGTAALI 105 Query: 135 ------PDYMLIRSLGLINNFLVYILPGLI--SAFNVIVLRSYIEGLPYELQESAKIDGA 186 P + +LGL + IL L+ + V +L +P EL+E+A+ GA Sbjct: 106 LFTRYPPLNSISETLGLFFSPKAVILAQLLVTTPIAVSMLTGVFSMVPRELEEAAEAYGA 165 Query: 187 NDFVIFSRVVMPLCLP-VLATIAL--FIAVGHWNS 218 I R+V+PL LP +L+ +A+ F A+G + + Sbjct: 166 GRLQILIRIVLPLSLPGILSALAVTFFRALGEFGA 200 >gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyrum pernix K1] Length = 314 Score = 41.2 bits (95), Expect = 3e-05 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 5/78 (6%) Query: 149 FLVYILPGLIS-AFNVIVLRSYIEGLPYELQESAKIDGANDFVIFSRVVMPLCLPVLATI 207 +++ + GL+ +F +IV S I +P+E +A++DGA++ VI R+++P+ + Sbjct: 168 WILIFVNGLVGVSFGMIVFYSAIRSIPWEYIAAARVDGASNLVIIRRIIVPM----IRWH 223 Query: 208 ALFIAVGHWNSWFDTYLY 225 LF+ V S TY + Sbjct: 224 LLFVTVWQMLSLLTTYTH 241 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.140 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 268,418 Number of Sequences: 1700 Number of extensions: 10530 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 5 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 6 length of query: 308 length of database: 492,079 effective HSP length: 77 effective length of query: 231 effective length of database: 361,179 effective search space: 83432349 effective search space used: 83432349 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718117|ref|YP_003873649.1| polysaccharide ABC transporter substrate-binding protein [Spirochaeta thermophila DSM 6192] (556 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 630,682 Number of Sequences: 1700 Number of extensions: 30173 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 556 length of database: 492,079 effective HSP length: 82 effective length of query: 474 effective length of database: 352,679 effective search space: 167169846 effective search space used: 167169846 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718118|ref|YP_003873650.1| hypothetical protein STHERM_c04050 [Spirochaeta thermophila DSM 6192] (33 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.151 0.507 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,038 Number of Sequences: 1700 Number of extensions: 1398 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 33 length of database: 492,079 effective HSP length: 7 effective length of query: 26 effective length of database: 480,179 effective search space: 12484654 effective search space used: 12484654 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718119|ref|YP_003873651.1| glycosyl hydrolase family 12 protein, TPS linker, domain X [Spirochaeta thermophila DSM 6192] (368 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.134 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 392,604 Number of Sequences: 1700 Number of extensions: 16987 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 0 length of query: 368 length of database: 492,079 effective HSP length: 78 effective length of query: 290 effective length of database: 359,479 effective search space: 104248910 effective search space used: 104248910 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718120|ref|YP_003873652.1| transmembrane lipoprotein [Spirochaeta thermophila DSM 6192] (241 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 236,690 Number of Sequences: 1700 Number of extensions: 9755 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 241 length of database: 492,079 effective HSP length: 74 effective length of query: 167 effective length of database: 366,279 effective search space: 61168593 effective search space used: 61168593 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718121|ref|YP_003873653.1| pectate lyase protein [Spirochaeta thermophila DSM 6192] (466 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.137 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 528,220 Number of Sequences: 1700 Number of extensions: 26648 Number of successful extensions: 83 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83 Number of HSP's gapped (non-prelim): 0 length of query: 466 length of database: 492,079 effective HSP length: 80 effective length of query: 386 effective length of database: 356,079 effective search space: 137446494 effective search space used: 137446494 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718122|ref|YP_003873654.1| hypothetical protein STHERM_c04090 [Spirochaeta thermophila DSM 6192] (251 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 210,472 Number of Sequences: 1700 Number of extensions: 8794 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 251 length of database: 492,079 effective HSP length: 75 effective length of query: 176 effective length of database: 364,579 effective search space: 64165904 effective search space used: 64165904 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718123|ref|YP_003873655.1| hypothetical protein STHERM_c04100 [Spirochaeta thermophila DSM 6192] (35 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.146 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,909 Number of Sequences: 1700 Number of extensions: 508 Number of successful extensions: 1 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 35 length of database: 492,079 effective HSP length: 9 effective length of query: 26 effective length of database: 476,779 effective search space: 12396254 effective search space used: 12396254 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718124|ref|YP_003873656.1| methyl-accepting chemotaxis protein [Spirochaeta thermophila DSM 6192] (698 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aero... 50 2e-07 gi|14601261|ref|NP_147796.1| surface layer protein [Aeropyrum pe... 47 1e-06 gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad5... 44 2e-05 >gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aeropyrum pernix K1] Length = 791 Score = 49.7 bits (117), Expect = 2e-07 Identities = 75/363 (20%), Positives = 142/363 (39%), Gaps = 69/363 (19%) Query: 322 EKVSRGHLEVPPRIRGRDEMAFMLNLFSGFVERIRRTVGRVQEEMSLVARSGGALAQAVD 381 EK+++ + D +L + + ER R + +E ++ AQ Sbjct: 470 EKIAQAEAALEKADSKLDTAEAILEVVEEYAERAREAIEEAEEALAKAEAKLQLAAQLSG 529 Query: 382 HTSHAVEDILSQLDRTSSDIEAQNTS-----------IVETSSAVEQMARN-----IEML 425 S AVE+ L++L+ +EA + + E ++++ + A+ IE Sbjct: 530 --SEAVEEALNRLEEAKEKLEAAKEAYSNGRYGEAIVLAEEAASIAEEAKELAEKAIEAA 587 Query: 426 SEAISRQSSSIEESATAVEQMVKNVEAIGRMGEALSDNFTTLQSASEEGKSGLQNLVQLA 485 EA+S + +EE V+ + + +E I +Q+A +E L L Sbjct: 588 QEAVSEVLNQVEELLDRVKDLQEEIEDIAEKAREAGVLTEEIQAAIDEVLGKLDQARSLL 647 Query: 486 EVIRDTSKQ---------LEEANRIISGVASETXXXXXXXXXXXXXXXXXXXGFAVVADE 536 E +K+ L EA +I S + + Sbjct: 648 EEADSLAKEGDIDGARQKLGEARDVIEEAVS-------------------------MVRD 682 Query: 537 IRKLAEQTTNHSKRIRESIRDIRRAIEEMVGLSQASFSTFELILERLEGVASYIQQVGN- 595 IR + EQ I + I ++RR IEE+ + A +T +LE + +++G+ Sbjct: 683 IRSMVEQA------IGDLIDELRRLIEELREKA-AELNTEAAMLE------AKARRMGDR 729 Query: 596 -ALHEQRAGGTQILQALEEMRSITAQVKDGSHQMAEGNAHILDAAGRLNELTQRIEQAMK 654 AL + I +A+E+++ T ++ DG ++ E I A LNE ++E+A + Sbjct: 730 EALRLIEEARSNIEEAIEKLQDATDKLGDG--KLGEAREAIGQAEDLLNEAEMKLEEARQ 787 Query: 655 AIG 657 +G Sbjct: 788 RLG 790 >gi|14601261|ref|NP_147796.1| surface layer protein [Aeropyrum pernix K1] Length = 533 Score = 47.4 bits (111), Expect = 1e-06 Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 14/221 (6%) Query: 359 VGRVQEEMSLVARSGGALAQAVDHTSH-------AVEDILSQLDRTSSDIEAQNTSIVET 411 V ++E +SLV ++ L A+D AVED+ QL S + A + + Sbjct: 239 VAPLEERLSLVEQAVEDLGLALDSLEERVGDLEFAVEDLTLQLSSLDSRVGALEDRVADI 298 Query: 412 SSAVEQMARNIEMLS---EAISRQSSSIEESATAVEQMVKNVEA-IGRMGEALSDNFTTL 467 +E + ++E LS +A+S+Q ++ E ++ V+++EA +G + + LS + Sbjct: 299 EGRLEAVEGSLEDLSGAVDAMSQQLQALAEDLESLSSRVEDLEARVGSVEDRLSQAEEDI 358 Query: 468 QSASEEGKSGLQNLVQLAEVIRDTSKQLEEANRIISGVASETXXXXXXXXXXXXXXXXXX 527 S + S L L+ + + LE+ N + VAS Sbjct: 359 DSLTTSLDSLRTELEDLSTRLAEAQASLEDLNTRLDQVASTLQQLQQRLATAEESLQALT 418 Query: 528 XGFAVVADEIRKLAEQTTNHSKR---IRESIRDIRRAIEEM 565 A + E+ L + +R +R ++ +R +E + Sbjct: 419 EDLASLQAEVETLQQSIVEIDRRLGQLRSTVDAVRLEVESL 459 Score = 43.5 bits (101), Expect = 2e-05 Identities = 55/289 (19%), Positives = 120/289 (41%), Gaps = 28/289 (9%) Query: 409 VETSSAVEQMARNIEMLSEAISRQSSSIEESATAVEQMVKNV--------EAIGRMGEAL 460 VE + V + E+ E S + +EE + VEQ V+++ E +G + A+ Sbjct: 215 VEVADGVATIGGAREIAEEVASAYVAPLEERLSLVEQAVEDLGLALDSLEERVGDLEFAV 274 Query: 461 SDNFTTLQSASEEGKSGL--QNLVQLAEVIRDTSKQLEEANRIISGVASETXXXXXXXXX 518 D TLQ +S + + G + + + LE+ + + ++ + Sbjct: 275 ED--LTLQLSSLDSRVGALEDRVADIEGRLEAVEGSLEDLSGAVDAMSQQLQALAEDLES 332 Query: 519 XXXXXXXXXXGFAVVADEIRKLAEQTTNHSKRIRESIRDIRRAIEEMVGLSQASFSTFEL 578 V D + + E + + S+ +R +E++ + ++ E Sbjct: 333 LSSRVEDLEARVGSVEDRLSQAEEDIDS----LTTSLDSLRTELEDLSTRLAEAQASLED 388 Query: 579 ILERLEGVASYIQQVGNALHEQRAGGTQILQAL-EEMRSITAQVKDGSHQMAEGNAHILD 637 + RL+ VAS +QQ L ++ A + LQAL E++ S+ A+V+ I++ Sbjct: 389 LNTRLDQVASTLQQ----LQQRLATAEESLQALTEDLASLQAEVETLQQS-------IVE 437 Query: 638 AAGRLNELTQRIEQAMKAIGGQSEEIEKVLDVLRKENAETQQSIARVQE 686 RL +L ++ + E++ + + ++++A + +++QE Sbjct: 438 IDRRLGQLRSTVDAVRLEVESLGEKLVQAEEKNQRQDASIEDFQSQIQE 486 >gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1] Length = 919 Score = 43.5 bits (101), Expect = 2e-05 Identities = 64/323 (19%), Positives = 133/323 (41%), Gaps = 62/323 (19%) Query: 384 SHAVEDILSQLDRTSSDIEAQNTSIVETSSAVEQMARNIEMLSEAISRQSSSIEESATAV 443 S E +L +LD +D+E++ ++ + +SA+E AR L +A+ S +EES + Sbjct: 410 SEKPESVLERLDAVINDLESKARALDQEASALEAEARR---LVQAL----SMLEESGGSA 462 Query: 444 EQMVKNVEAIGRMGEALSDNFTTLQSASEEGKSGLQNLVQLAEVIRDTSKQLEEANRIIS 503 V E EA++ ++ + +E + + AE R + +L++ R I Sbjct: 463 RCPVCGAELPPGRAEAIARHY---RHEAERLRKAAKEKAAEAEKARAEASRLQDKRRRIE 519 Query: 504 GVASETXXXXXXXXXXXXXXXXXXXGFAVVADEIRKLAEQTTNHSKRIRESIRDIRRAIE 563 + S + + +R+L QT + + +R +R +E Sbjct: 520 LLLSRLNQ---------------------LEEGLRELGFQTPEDLAKAEQKLRMLRERLE 558 Query: 564 EMVGLSQASFSTFELILERLEGVASYIQQVGNALHEQRAGGTQILQAL--------EEMR 615 E+ L + LE + + AL E + ++LQ L E+++ Sbjct: 559 ELRKLENS-----------LEEKVRNLSREEVALREAKTRALEVLQRLGIKEEEAREKLK 607 Query: 616 SITAQVKDGSHQMAEGNAHILDAAG-----RLNELTQRIEQAMKAIGGQSEEIEKVLDVL 670 +++++ K + + G L++L ++ +A++ + + IE+ L+ Sbjct: 608 TLSSESKKLERMLVSKAEDLATRLGITAYRSLDDLLEKAREALEGVDKELSAIERRLEEA 667 Query: 671 R--KENA-----ETQQSIARVQE 686 R KE A E +Q + R++E Sbjct: 668 RRLKEEAAKLKWEAEQVMKRLEE 690 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.133 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 565,476 Number of Sequences: 1700 Number of extensions: 22081 Number of successful extensions: 141 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 132 Number of HSP's gapped (non-prelim): 11 length of query: 698 length of database: 492,079 effective HSP length: 83 effective length of query: 615 effective length of database: 350,979 effective search space: 215852085 effective search space used: 215852085 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718125|ref|YP_003873657.1| unsaturated glucuronyl hydrolase [Spirochaeta thermophila DSM 6192] (367 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 424,872 Number of Sequences: 1700 Number of extensions: 20390 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 0 length of query: 367 length of database: 492,079 effective HSP length: 78 effective length of query: 289 effective length of database: 359,479 effective search space: 103889431 effective search space used: 103889431 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718126|ref|YP_003873658.1| 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [Spirochaeta thermophila DSM 6192] (277 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 258,237 Number of Sequences: 1700 Number of extensions: 10260 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 277 length of database: 492,079 effective HSP length: 76 effective length of query: 201 effective length of database: 362,879 effective search space: 72938679 effective search space used: 72938679 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718127|ref|YP_003873659.1| 2-deoxy-D-gluconate 3-dehydrogenase [Spirochaeta thermophila DSM 6192] (253 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] 105 1e-24 gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum... 104 2e-24 gi|118431423|ref|NP_147894.2| oxidoreductase [Aeropyrum pernix K1] 44 4e-06 >gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] Length = 260 Score = 105 bits (262), Expect = 1e-24 Identities = 75/255 (29%), Positives = 120/255 (47%), Gaps = 15/255 (5%) Query: 8 LDGKVAIVTXXXXXXXXXXXXXXXXXXXDIVAVMRSEEP--GLEREITSL--GRRYLWVE 63 + GK+A+VT ++ R+ E I SL G + V Sbjct: 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVA 64 Query: 64 ADLSSIEPVERIVEEAVKAFGKVDILVNNAGIIRRDDILDFSEEDWDEVMNVNLKSVFFL 123 D+ ++R+ E+A + G DILV + G R ++ EDWDE + +S ++ Sbjct: 65 GDIREPGDIDRLFEKA-RDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWV 123 Query: 124 SQAVARRMKEQGTGGKIINIASMLSFQGGIRVPSYTASKSGVLGLTRILGNELAKYDIQV 183 + A +M E+G G +++ I S+ + + + V+G+ R L ELA + + V Sbjct: 124 GRRAAEQMVEKGWG-RMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHGVTV 182 Query: 184 NAIAPGYIETDNTRALREDPVRN---------KEILGRIPAGRWGSPDDLKGAVVFLASP 234 NA+ P I TD R+L E+ R K + RIP GR G P++L V FLAS Sbjct: 183 NAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIPMGRVGKPEELASVVAFLASE 242 Query: 235 ASDYMTGSVVAVDGG 249 + ++TG+V+ VDGG Sbjct: 243 KASFITGAVIPVDGG 257 >gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum pernix K1] Length = 250 Score = 104 bits (260), Expect = 2e-24 Identities = 60/190 (31%), Positives = 109/190 (57%), Gaps = 3/190 (1%) Query: 62 VEADLSSIEPVERIVEEAVKAFGKVDILVNNAGIIRRDDILDFSEEDWDEVMNVNLKSVF 121 V D+ + V + + +++LVN AG+++ I + S +W+E + VNL V+ Sbjct: 59 VRVDVGDPDSVTEMSSRVGELIPHLNVLVNAAGVLQLGGIEETSISEWEETLRVNLTGVY 118 Query: 122 FLSQAVARRMKEQGTGGKIINIASMLSFQGGIRVP-SYTASKSGVLGLTRILGNELAKYD 180 +++ + +++ I+N+AS+ G + +Y+ASK+GV+GLT+ L +LA Y Sbjct: 119 LVTKLLLPLLRK-AKWASIVNVASIAGETGNVVAGVAYSASKAGVIGLTKRLAVQLAGYG 177 Query: 181 IQVNAIAPGYIETDNTRALREDPVRNKEILGRIPAGRWGSPDDLKGAVVFLASP-ASDYM 239 I+VNA+AP ++ETD TR+ + P + + I P P+D+ A++FLA P S + Sbjct: 178 IRVNAVAPSFVETDMTRSFLDTPEKRERIASLHPLKIILKPEDVAEAILFLADPRRSRGI 237 Query: 240 TGSVVAVDGG 249 TG V++++ G Sbjct: 238 TGHVLSINAG 247 >gi|118431423|ref|NP_147894.2| oxidoreductase [Aeropyrum pernix K1] Length = 260 Score = 43.9 bits (102), Expect = 4e-06 Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 21/198 (10%) Query: 65 DLSSIEPVERIVEEAVKAFGKVDILVNNAGIIRRDDIL--DFSEEDWDEVMNVNLKSVFF 122 DL VE V AV+ FG+VD +V G I R+ + + EDW E + L S Sbjct: 62 DLRKKGHVENAVIHAVQTFGRVDAVVAAYGNISREPLTLREAEWEDWIEAAALYLASTSS 121 Query: 123 LSQAVARRMKEQGTGGKIINIASMLSFQGGIRVPSYTASKSGVLGLTRILGNELAKYDIQ 182 L +A+A + T + + SF + S + GL+R++ + Y + Sbjct: 122 LFKALASYNTAKAT------VILLSSFTVAEPMDPLIVSDAVRAGLSRLVKSAARLYPDR 175 Query: 183 VNAI--------APGYIET----DNTRALREDPVRNKEILGRIPAGRWGSPDDLKGAVVF 230 + I PG + T +R + V +E+ P R G D+ + + Sbjct: 176 IRPILLILGSFKTPGAMRTLERIARSRGESLENVWRREVEMLSPLARSGGLDEFEEVIRM 235 Query: 231 LASPASDYMTGSVVAVDG 248 L + DYM G+ V DG Sbjct: 236 LVR-SPDYMHGATVVFDG 252 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 253,445 Number of Sequences: 1700 Number of extensions: 11575 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 3 length of query: 253 length of database: 492,079 effective HSP length: 75 effective length of query: 178 effective length of database: 364,579 effective search space: 64895062 effective search space used: 64895062 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718128|ref|YP_003873660.1| 6-phosphogluconate dehydrogenase [Spirochaeta thermophila DSM 6192] (487 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 545,132 Number of Sequences: 1700 Number of extensions: 26269 Number of successful extensions: 82 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82 Number of HSP's gapped (non-prelim): 0 length of query: 487 length of database: 492,079 effective HSP length: 80 effective length of query: 407 effective length of database: 356,079 effective search space: 144924153 effective search space used: 144924153 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718129|ref|YP_003873661.1| hypothetical protein STHERM_c04160 [Spirochaeta thermophila DSM 6192] (423 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 504,766 Number of Sequences: 1700 Number of extensions: 24873 Number of successful extensions: 85 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85 Number of HSP's gapped (non-prelim): 0 length of query: 423 length of database: 492,079 effective HSP length: 79 effective length of query: 344 effective length of database: 357,779 effective search space: 123075976 effective search space used: 123075976 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718130|ref|YP_003873662.1| hypothetical protein STHERM_c04170 [Spirochaeta thermophila DSM 6192] (295 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.135 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 306,525 Number of Sequences: 1700 Number of extensions: 13089 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 295 length of database: 492,079 effective HSP length: 76 effective length of query: 219 effective length of database: 362,879 effective search space: 79470501 effective search space used: 79470501 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718131|ref|YP_003873663.1| alpha-L-fucosidase [Spirochaeta thermophila DSM 6192] (758 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.481 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 751,099 Number of Sequences: 1700 Number of extensions: 31926 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 0 length of query: 758 length of database: 492,079 effective HSP length: 84 effective length of query: 674 effective length of database: 349,279 effective search space: 235414046 effective search space used: 235414046 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718132|ref|YP_003873664.1| transporter [Spirochaeta thermophila DSM 6192] (338 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 310,892 Number of Sequences: 1700 Number of extensions: 12796 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 338 length of database: 492,079 effective HSP length: 77 effective length of query: 261 effective length of database: 361,179 effective search space: 94267719 effective search space used: 94267719 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718133|ref|YP_003873665.1| transporter [Spirochaeta thermophila DSM 6192] (193 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.143 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 184,011 Number of Sequences: 1700 Number of extensions: 6832 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 0 length of query: 193 length of database: 492,079 effective HSP length: 72 effective length of query: 121 effective length of database: 369,679 effective search space: 44731159 effective search space used: 44731159 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718134|ref|YP_003873666.1| transporter [Spirochaeta thermophila DSM 6192] (426 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601866|ref|NP_148407.1| hypothetical protein APE_2133 [Aero... 58 4e-10 gi|118431920|ref|NP_148683.2| TRAP transporter membrane-spanning... 44 6e-06 >gi|14601866|ref|NP_148407.1| hypothetical protein APE_2133 [Aeropyrum pernix K1] Length = 731 Score = 58.2 bits (139), Expect = 4e-10 Identities = 62/259 (23%), Positives = 100/259 (38%), Gaps = 22/259 (8%) Query: 16 MPVAFAIGIS-GVAFFLQHPELP------FSMIVQLPISQTQNFPLLAVPL--------- 59 +P A+ ++ G + HP F +V ISQ Q F L VPL Sbjct: 166 LPAIMAVFVAYGFIYAYTHPPFGVEGLQVFRRLVTAFISQNQGF--LGVPLTVMVYYVFI 223 Query: 60 FIFAGNIMNSAGVTQRLIKLSTLLTGHMRGGLAQVSVVLSTLMGGVSGSATADAAMEARL 119 F+F + ++ GV + + L T L G GG A+V+VV S +MG +SGS+ A+ Sbjct: 224 FLFFSSFLDKLGVGKYITDLMTALFGRKPGGPAKVAVVSSAMMGTISGSSVANTLTTGTF 283 Query: 120 LGPGMLERGYSKGYIAAVIGYTSLITATVPP--GVGIIIYGTTGEVSIGQLFAAGLMVGL 177 P M G+ A+ S +PP G I + G + A L+ + Sbjct: 284 TIPAMKRAGFPPEVAGAIEPVASTGGQLMPPIMGAAAFIMAEFVGIPYGMVVIAALLPAI 343 Query: 178 IMMVALMITVAITAXXXXXXXXXXXXASLKEIFSSLGETIWALIFPILLLVGLRMGIYTP 237 + + I V + + L + L + L P++L+ LR+ + Sbjct: 344 LYFYS--IYVFVDKESKKRRLKGLPDSELPPLRPLLVRLYYLLPIPLILIGLLRLAPHHA 401 Query: 238 SEVGAFACVYGIFVGVFVY 256 G A V + +Y Sbjct: 402 VMAGILATVAVYVIDTILY 420 >gi|118431920|ref|NP_148683.2| TRAP transporter membrane-spanning component [Aeropyrum pernix K1] Length = 600 Score = 44.3 bits (103), Expect = 6e-06 Identities = 84/402 (20%), Positives = 150/402 (37%), Gaps = 33/402 (8%) Query: 39 SMIVQLPISQTQNFPLLAVPL---FIFAGNIMNSAGVTQRLIKLSTLLTGHMRGGLAQVS 95 +M V+ + P LA+ L F+ +I + G +I+L G L Q + Sbjct: 161 AMSVEFETGVFEKLPQLALTLIGAFMLFISIAQAFGAVDSVIRLVIGALGSRPRLLPQAA 220 Query: 96 VVLSTLMGGVSGSATADAAMEARLLGPGMLERGYSKGYIAAVIGYTSLITATVPP--GVG 153 VV S ++ VSGS A+AA + P M + G AA+ +S+ +PP G+ Sbjct: 221 VVGSMVIAMVSGSGAANAASTGSITIPLMKKAGMPPVKAAAIETASSIGGQLMPPIMGIS 280 Query: 154 IIIYGTTGEVSIGQLFAAGLMVGLIMMVALMITVAITAXXXXXXXXXXXXA-SLKEIFSS 212 + VS + A G LI + L V + + E++ + Sbjct: 281 AFVMADYLGVSYFDVVARGWAPALIYYIGLAAAVYLASKAFLSGTAALNIGYGRLEVYKA 340 Query: 213 LGETIWALIFPILLLVGLRMGIYTPSEVGAFACVYG--IFVGVFVYKELTWKKFL----- 265 ++ A I +++L+G R E A+A + + + + E + K L Sbjct: 341 --TSLMASILLLIILMGAR------REYPAYAALQSSILLLALLAAAEASRGKSLHEVAG 392 Query: 266 -------ETLRTTANDVGAVMYIIALSGIFRYGIPFEHIPQALTSLITGF-TSNVHXXXX 317 ETL+ + V + ++A G+ + IP + L+ N Sbjct: 393 RILARLAETLKIFSGFVADITILLAALGVMTGLMTITGIPTRVGFLLLEVGAGNKILLVM 452 Query: 318 XXXXXXXXXGMFMEGSVAILLFTPILLPMVQAFGVDP--VHFGLVMCTTITMGLLTPPVG 375 G+ + V +L ++ P + G +P VHF + M L+PP Sbjct: 453 LAFVFGYLVGLGLPPVVTYILTVVVIGPYMLQAGFNPWAVHFYAFLLG--VMSELSPPTS 510 Query: 376 ISMYALSSILEMPISEYLKEMWPFLGAVVAVILFMIFFPDVV 417 ++ S I E + E F + V+ ++ P +V Sbjct: 511 VTAAVTSRIAGAGFVETMIESIKFAMPLFTVMAGVLLEPGLV 552 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.144 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 382,422 Number of Sequences: 1700 Number of extensions: 16548 Number of successful extensions: 83 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 81 Number of HSP's gapped (non-prelim): 2 length of query: 426 length of database: 492,079 effective HSP length: 79 effective length of query: 347 effective length of database: 357,779 effective search space: 124149313 effective search space used: 124149313 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718135|ref|YP_003873667.1| 3-oxoacyl-ACP reductase [Spirochaeta thermophila DSM 6192] (246 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum... 172 9e-45 gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] 100 3e-23 gi|118431423|ref|NP_147894.2| oxidoreductase [Aeropyrum pernix K1] 48 3e-07 >gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum pernix K1] Length = 250 Score = 172 bits (435), Expect = 9e-45 Identities = 106/244 (43%), Positives = 146/244 (59%), Gaps = 11/244 (4%) Query: 8 ALVTGSARGIGRAVALRLAQEGASVGIM-----DLKGTEETAQEFSSMGH-KAVPLHADV 61 ALVTG +RGIGRA LR A+EG SV I DL E+TA+E +G +A + DV Sbjct: 6 ALVTGGSRGIGRATVLRFAREGWSVVIAYKSRADL--AEKTAEEARRLGSPEAYTVRVDV 63 Query: 62 TRYEEVASAVEKLVEAFGKVDILVNNAGIIVRGHVLDLSLEEWRKVIDVNLHGTFHCCKA 121 + V ++ E +++LVN AG++ G + + S+ EW + + VNL G + K Sbjct: 64 GDPDSVTEMSSRVGELIPHLNVLVNAAGVLQLGGIEETSISEWEETLRVNLTGVYLVTKL 123 Query: 122 VLPYMVKQNYGRIVNITSIAGKVGDITAAPAYGTSKGAVNTLTKSLARQLADYGITVNAV 181 +LP + K + IVN+ SIAG+ G++ A AY SK V LTK LA QLA YGI VNAV Sbjct: 124 LLPLLRKAKWASIVNVASIAGETGNVVAGVAYSASKAGVIGLTKRLAVQLAGYGIRVNAV 183 Query: 182 APHAIETDMSAQW--TPEQRKAVIDAIPLKRLGKPEEVAEAVVFLVSEGAS-FITGEILD 238 AP +ETDM+ + TPE+R+ + PLK + KPE+VAEA++FL S ITG +L Sbjct: 184 APSFVETDMTRSFLDTPEKRERIASLHPLKIILKPEDVAEAILFLADPRRSRGITGHVLS 243 Query: 239 VNGG 242 +N G Sbjct: 244 INAG 247 >gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] Length = 260 Score = 100 bits (249), Expect = 3e-23 Identities = 79/262 (30%), Positives = 128/262 (48%), Gaps = 31/262 (11%) Query: 3 LKDRVALVTGSARGIGRAVALRLAQEGASVGIM--DLKGTEETAQEFSSM--GHKAVPLH 58 ++ ++A+VT + G+G A AL LA+ GA + + + + E A +S+ G + + Sbjct: 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVA 64 Query: 59 ADVTRYEEVASAVEKLVEAFGKVDILVNNAGIIVRGHVLDLSLEEWRKVIDVNLHGTFHC 118 D+ ++ EK + G DILV + G G ++L +E+W + + Sbjct: 65 GDIREPGDIDRLFEKARD-LGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWV 123 Query: 119 CKAVLPYMVKQNYGRIVNITSIAG-------KVGDITAAPAYGTSKGAVNTLTKSLARQL 171 + MV++ +GR+V I S+ + +I P G + ++LA +L Sbjct: 124 GRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIG--------VVRTLALEL 175 Query: 172 ADYGITVNAVAPHAIETDM-----------SAQWTPEQRKAVIDAIPLKRLGKPEEVAEA 220 A +G+TVNAV P I TD S E K++ IP+ R+GKPEE+A Sbjct: 176 APHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIPMGRVGKPEELASV 235 Query: 221 VVFLVSEGASFITGEILDVNGG 242 V FL SE ASFITG ++ V+GG Sbjct: 236 VAFLASEKASFITGAVIPVDGG 257 >gi|118431423|ref|NP_147894.2| oxidoreductase [Aeropyrum pernix K1] Length = 260 Score = 47.8 bits (112), Expect = 3e-07 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 8/170 (4%) Query: 9 LVTGSARGIGRAVALRLAQEGASVGIM--DLKGTEETAQEFSS-MGHKAVPLHADVTRYE 65 LV G +RG+G A LA G ++ I+ + E++A+E S G PL D+ + Sbjct: 8 LVLGGSRGLGFHAARALASLGCNLVIVARGREALEKSAKEISEGFGVDVEPLVGDLRKKG 67 Query: 66 EVASAVEKLVEAFGKVDILVNNAGIIVRGHVL--DLSLEEWRKVIDVNLHGTFHCCKAVL 123 V +AV V+ FG+VD +V G I R + + E+W + + L T KA+ Sbjct: 68 HVENAVIHAVQTFGRVDAVVAAYGNISREPLTLREAEWEDWIEAAALYLASTSSLFKALA 127 Query: 124 PYMVKQNYGRIVNITSIAGKVGDITAAPAYGTSKGAVNTLTKSLARQLAD 173 Y + +++ ++A + + + A + ++ L KS AR D Sbjct: 128 SYNTAKATVILLSSFTVAEPMDPLIVSDAV---RAGLSRLVKSAARLYPD 174 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 236,956 Number of Sequences: 1700 Number of extensions: 9770 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 3 length of query: 246 length of database: 492,079 effective HSP length: 74 effective length of query: 172 effective length of database: 366,279 effective search space: 62999988 effective search space used: 62999988 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718136|ref|YP_003873668.1| hypothetical protein STHERM_c04230 [Spirochaeta thermophila DSM 6192] (239 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 214,196 Number of Sequences: 1700 Number of extensions: 8214 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 239 length of database: 492,079 effective HSP length: 74 effective length of query: 165 effective length of database: 366,279 effective search space: 60436035 effective search space used: 60436035 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718137|ref|YP_003873669.1| hypothetical protein STHERM_c04240 [Spirochaeta thermophila DSM 6192] (325 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431608|ref|NP_148197.2| glyoxylate reductase [Aeropyrum pe... 180 5e-47 gi|118431906|ref|NP_148658.2| glyoxylate reductase [Aeropyrum pe... 150 3e-38 gi|118431387|ref|NP_147833.2| glyoxylate reductase [Aeropyrum pe... 87 4e-19 >gi|118431608|ref|NP_148197.2| glyoxylate reductase [Aeropyrum pernix K1] Length = 335 Score = 180 bits (456), Expect = 5e-47 Identities = 115/278 (41%), Positives = 153/278 (55%), Gaps = 11/278 (3%) Query: 39 PPQE-FLSIAQEADALLVNLRP-IPEETISHLRRCRIISRYGIGVDNVDVEAATAAGIWV 96 PP E LS A+EADAL L I + +S R RI+++ +G DN+DVE AT GI+V Sbjct: 35 PPYETLLSKAREADALYTLLTDRIDCDLLSQAPRLRIVAQMAVGFDNIDVECATRLGIYV 94 Query: 97 SNVPDYGIEEVSDHXXXXXXXXXXXIMVKDRGIRVGKWN------HTAGLKAFRLHGKVL 150 +N P E ++ ++ D +R G+W H + L GK L Sbjct: 95 TNTPGVLTEATAEFTWALILAAARRVVEADHFVRWGEWWRLRTGWHPMMMLGVELRGKTL 154 Query: 151 GIVGYGRIARAFHRKMKGFGFARTLVYDPYIPSEEISRA-GGEAADLFTLLREADYISIH 209 GI+G GRI K FG ++Y EI + G E L LLRE+D +SIH Sbjct: 155 GILGMGRIGSRVAEIGKAFGMR--IIYHSRSRKREIEKELGAEYRSLEDLLRESDILSIH 212 Query: 210 APLTKETRHLIGEREIGMMKPTAVIVNTSRGAIIDQQALQRALEEHRILGAGLDVFEEEP 269 PLT ETRHLIGE E+ +MK TA++VNT RGAI+D AL +AL E I A LDVFEEEP Sbjct: 213 LPLTDETRHLIGESELKLMKKTAILVNTGRGAIVDTGALVKALREGWIAAAALDVFEEEP 272 Query: 270 LPKDSPLRDLENVVLSDHSAYYSEESLVDLKRKAALNV 307 L + PL +NVVL+ H+A + E+ + + AA N+ Sbjct: 273 LNPNHPLTAFKNVVLAPHAASATRETRLRMAMMAAENL 310 >gi|118431906|ref|NP_148658.2| glyoxylate reductase [Aeropyrum pernix K1] Length = 333 Score = 150 bits (380), Expect = 3e-38 Identities = 99/301 (32%), Positives = 154/301 (51%), Gaps = 13/301 (4%) Query: 32 VVCREDMPPQEFLSIAQEADALLVNLR---PIPEETISHLRRCRIISRYGIGVDNVDVEA 88 VV +P + L ++AD ++ + I E + + R R++ + G D++DVEA Sbjct: 32 VVSVAGLPRERVLEELRDADVVIGDYTFQMRIDAEMCAAMERVRLVQQPSTGYDHIDVEA 91 Query: 89 ATAAGIWVSNVPDYGIEEVSDHXXXXXXXXXXXIMVKDRGIRVGKWNHTAGLK--AFRLH 146 G+ V+N V+++ ++ R G W ++ F L Sbjct: 92 CARHGVPVANAGGANAVSVAEYTIMAALALLKRLLYAHRETVAGGWPQWRLMEMGTFDLQ 151 Query: 147 GKVLGIVGYGRIARAFHRKMKGFGFARTLVYDPYIPSEEISRAGGEAADLFTLLREADYI 206 GK GI+G GRI R ++++ F RT+ +D + G E L LLRE+D + Sbjct: 152 GKTWGIIGLGRIGREVAKRLRPFE-VRTVYFDKVRMEDAERELGVEYRSLSRLLRESDVV 210 Query: 207 SIHAPLTKETRHLIGEREIGMMKPTAVIVNTSRGAIIDQQALQRALEEHRILGAGLDVFE 266 SIH PLT ETR +IGE E+ MMKPTAV++N SRG I+D++AL RA+ E I GA +DV+ Sbjct: 211 SIHVPLTSETRGMIGEGELRMMKPTAVLINPSRGEIVDEEALARAVRERWIAGAAVDVYS 270 Query: 267 EEPLPKDSPL------RDLENVVLSDHSAYYSEESLVDLKRKAALNVKETLLKGRPLYPV 320 EP P D PL D+ N++L+ H A + ++ + + + N+ L G+P V Sbjct: 271 REPPPPDHPLIRAAGEADV-NLILTPHIAGANTDARSRIIQFSIENIVRVLKGGKPEAVV 329 Query: 321 N 321 N Sbjct: 330 N 330 >gi|118431387|ref|NP_147833.2| glyoxylate reductase [Aeropyrum pernix K1] Length = 347 Score = 87.4 bits (215), Expect = 4e-19 Identities = 73/249 (29%), Positives = 110/249 (44%), Gaps = 10/249 (4%) Query: 80 GVDNVDVEAATAAGIWVSNVPDYGIEEVSDHXXXXXXXXXXXI----MVKDRGIRVGKWN 135 G D+VDVEAA G+ V+N P+ E V+++ + M R R G + Sbjct: 76 GFDHVDVEAAAGVGVCVANQPEVITEAVAEYVVAAVLAALRGVVAGHMYTPRWAREGWPS 135 Query: 136 HTAGLKAFRLHGKVLGIVGYGRIARAFHRKMKGFGFARTLVYDPYIPSEEISRAGGEAAD 195 H AG F + G+ +G++G GRI ++ K+ G Y + G + + Sbjct: 136 HLAG---FLVRGRSVGLLGAGRIGQSVAFKLAALGAGPFYYYSRSRKPGLEAVLGAKRLE 192 Query: 196 LFTLLREADYISIHAPLTKETRHLIGEREIGMMKPTAVIVNTSRGAIIDQQALQRALEEH 255 L + + PLT ETR L+ + ++ AV VN RG + A++ E Sbjct: 193 PRELFSRSMILVNSLPLTGETRGLVTAGLLRLLPRGAVYVNVGRGGTEEPGAVEAVASER 252 Query: 256 RILGAGLDVFEEEPLPKDS---PLRDLENVVLSDHSAYYSEESLVDLKRKAALNVKETLL 312 L LDV EEPLP S L VV++ H A S ES+ + AA+ ++ L Sbjct: 253 EDLYFVLDVHPEEPLPPSSGRMRLHGNPRVVMTPHIAGSSRESMTATRLLAAMQARDYLE 312 Query: 313 KGRPLYPVN 321 +G PVN Sbjct: 313 RGCVWNPVN 321 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 335,410 Number of Sequences: 1700 Number of extensions: 14819 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 3 length of query: 325 length of database: 492,079 effective HSP length: 77 effective length of query: 248 effective length of database: 361,179 effective search space: 89572392 effective search space used: 89572392 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718138|ref|YP_003873670.1| hypothetical protein STHERM_c04250 [Spirochaeta thermophila DSM 6192] (330 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601748|ref|NP_148289.1| oxidoreductase [Aeropyrum pernix K1] 99 1e-22 gi|14601541|ref|NP_148081.1| oxidoreductase [Aeropyrum pernix K1] 99 1e-22 gi|118431478|ref|NP_147979.2| hypothetical protein APE_1495.1 [A... 68 3e-13 >gi|14601748|ref|NP_148289.1| oxidoreductase [Aeropyrum pernix K1] Length = 272 Score = 99.4 bits (246), Expect = 1e-22 Identities = 66/198 (33%), Positives = 105/198 (53%), Gaps = 15/198 (7%) Query: 9 TDIRISRIGMGCWGIAGGRTWGERDDRRSIDTLRAAYDRGISFFDTAYSYGNGYSEELVG 68 T R+S +G+G W I RD ++++ A +RGI+ DTA YG G +E VG Sbjct: 17 TKERLSAVGLGTWAI--------RDYSSALESYVYAIERGINHIDTAEMYGAGEAERFVG 68 Query: 69 KALGPLG-DRVVIATKV-GTELSSPSEVERHCEESLRRLRRDWIDLYQLHWHLPGMPPLP 126 K L +G DRV + TK+ P E + S R+ ++D+ +HW P P+ Sbjct: 69 KVLRSVGRDRVYVVTKLYPFRFRDPDEAVKAARASAERMGVSYVDIILIHWPDP-QTPIK 127 Query: 127 EIIEAMWRLVESGKVRAIGVCNLGKGQL---ALLPPEIPVVTNQLPYSLLWRAIEYEVMP 183 + ++++ + E+G R IGV N K QL + +V NQ+ YS+L R E E++P Sbjct: 128 DQVKSLEAIAEAGLARYIGVSNFSKEQLEEALTATKKHEIVVNQVKYSVLDRRAE-ELIP 186 Query: 184 ASLERGMGILAYSPLMQG 201 ++E+ + + AYSPL +G Sbjct: 187 LAVEKSILLEAYSPLERG 204 >gi|14601541|ref|NP_148081.1| oxidoreductase [Aeropyrum pernix K1] Length = 335 Score = 99.0 bits (245), Expect = 1e-22 Identities = 89/305 (29%), Positives = 134/305 (43%), Gaps = 26/305 (8%) Query: 9 TDIRISRIGMGCWGIAGGRTWGERDDRRSIDT--LRAAYDRGISFFDTAYSYGNGYSEEL 66 T R+SR+G+G W G WG + + L A + GI+ DTA YG G SE + Sbjct: 10 TGPRVSRVGLGLWQF-GSPMWGGKALSADVLARGLSIAVEEGINLLDTAEVYGMGSSERM 68 Query: 67 VGKALGPLGDR--VVIATKVGTELSSPSEVERHCEESLRRLRRDWIDLYQLHWHLPGMPP 124 +G+AL L R VI +KV S+ ++ + RL D+ HW P Sbjct: 69 LGEALKRLNAREDFVIVSKVAGFRSTAGDIVKGARGIAGRLSSA-PDVILHHWPPPVYSR 127 Query: 125 LPEIIEAMWRLVESGKVRAIGVCNLGK---GQLALLPPEIPVVTNQLPYSLLWRAIEYEV 181 L ++ + + V G G N G+ G + V +Q+ Y+L +R E + Sbjct: 128 LCSVVRGLEQAVNEGLASYYGFSNYGEDLLGDALSCTRRLEPVADQILYNLAYRTPEQRL 187 Query: 182 MPASLERGMGILAYSPLMQGLLTGKFSSPEEVPEGRARSRHFSSSRPQAIHGEEGAEELT 241 +P + GM +A+SPL +G L G P G R + G +E+ Sbjct: 188 IPLLHQHGMTPIAWSPLAKGALAGFKGEPTRAQAGDPVFR--------TALEDTGLQEV- 238 Query: 242 FETIHRLSDLARDLDIPLAHLAIAWVLQREGVASVLVGARTPDQVDANVGALAVRLSEEV 301 L +AR L A +A+AWV + V +VG R P++V A ++LSEE Sbjct: 239 ------LESVARRLGASKASVALAWVAYKGAVP--IVGWRRPERVREAAAAARLKLSEED 290 Query: 302 LAELD 306 +A LD Sbjct: 291 VALLD 295 >gi|118431478|ref|NP_147979.2| hypothetical protein APE_1495.1 [Aeropyrum pernix K1] Length = 326 Score = 68.2 bits (165), Expect = 3e-13 Identities = 87/337 (25%), Positives = 140/337 (41%), Gaps = 51/337 (15%) Query: 9 TDIRISRIGMGCWGIAGGRTWGERDDRRSIDTLRAAYDRGISFFDTAYSYGNGYSEELVG 68 T + S++ G + + G +G + ++ LR A G+ FDTA YGNG E L+G Sbjct: 5 TKMPASKLAYGVYSLTG--MYGSVEPGEALAILRFARSLGVEHFDTADVYGNGLGERLLG 62 Query: 69 KALGPLGDRVVIATKVGTELSSPSE---------VERHCEESLRRLRRDWIDLYQLHWHL 119 +A P G V +ATKVG + S +E+ SL RL + +DL +H Sbjct: 63 EAF-PGGRGVFVATKVGYDFYSGGRPVRRYDREYLEKALRRSLERLGVESVDLLYIH--- 118 Query: 120 PGMPPLPEIIEA--MWRLVESGKVRAIGVCNLGKGQLALLP------------PEIPVVT 165 PPL E++ ++R + + + +G G +AL P V Sbjct: 119 --NPPL-EVLRGGEIYRFLSWARREGL----IGMGGIALGPETDVAEEALEAVSHSEVEA 171 Query: 166 NQLPYSLLWRAIEYEVMPASLERGMGILAYSPLMQGLLTGKFSSPEEVPEGRARSRHFSS 225 Q Y++L + Y + + ERG+ +A P G+L + E S H S Sbjct: 172 VQFVYNMLEQEPGYTIAAWARERGVAAVARVPHAGGVLDESITP----SEAEKLSDHRSL 227 Query: 226 SRPQAIHGEEGAEELTFETIHRLSDLARDLDIPLAHLAIAWVLQREGVASVLVGARTPDQ 285 R G F R+ L L AIA++L V SV++ AR+ ++ Sbjct: 228 RR-------RGWYRWAFRVYGRMKPLLEGLPGTPGQKAIAFILSSAPVDSVVLIARSRER 280 Query: 286 VDANVG-ALAVRLSEEVLAELDTITTPLKERLGPNPD 321 + V ++L V+ E+ I E +G +P+ Sbjct: 281 LVEYVSPESTLQLPRSVVEEIRRIYI---EEVGESPE 314 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 385,873 Number of Sequences: 1700 Number of extensions: 18762 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 3 length of query: 330 length of database: 492,079 effective HSP length: 77 effective length of query: 253 effective length of database: 361,179 effective search space: 91378287 effective search space used: 91378287 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718139|ref|YP_003873671.1| hypothetical protein STHERM_c04260 [Spirochaeta thermophila DSM 6192] (357 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 361,482 Number of Sequences: 1700 Number of extensions: 15005 Number of successful extensions: 27 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 0 length of query: 357 length of database: 492,079 effective HSP length: 78 effective length of query: 279 effective length of database: 359,479 effective search space: 100294641 effective search space used: 100294641 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718140|ref|YP_003873672.1| hypothetical protein STHERM_c04270 [Spirochaeta thermophila DSM 6192] (739 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.142 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 703,064 Number of Sequences: 1700 Number of extensions: 31258 Number of successful extensions: 123 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 123 Number of HSP's gapped (non-prelim): 0 length of query: 739 length of database: 492,079 effective HSP length: 84 effective length of query: 655 effective length of database: 349,279 effective search space: 228777745 effective search space used: 228777745 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718141|ref|YP_003873673.1| transporter [Spirochaeta thermophila DSM 6192] (312 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.142 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 302,463 Number of Sequences: 1700 Number of extensions: 12144 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 0 length of query: 312 length of database: 492,079 effective HSP length: 77 effective length of query: 235 effective length of database: 361,179 effective search space: 84877065 effective search space used: 84877065 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718142|ref|YP_003873674.1| transporter [Spirochaeta thermophila DSM 6192] (290 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 106 8e-25 gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyru... 67 4e-13 gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum... 60 8e-11 gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease... 44 5e-06 gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 43 1e-05 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 106 bits (264), Expect = 8e-25 Identities = 69/241 (28%), Positives = 115/241 (47%), Gaps = 24/241 (9%) Query: 60 FTLDAYRNLLSRPALYRPFLVS------LYTTTLGTIIALMTTALFAYALAQDNLPGKGF 113 FT+D Y S Y P+ VS L T+I + + AY ++ + P K + Sbjct: 60 FTMDNYIKAWS----YDPYSVSGGYINSLIVALPATVIPVAAASFAAYGFSRFSFPLKSY 115 Query: 114 FLMVALITMVF--RAGMIPLFLVVRDIGLLNNVWAVIL--SRCVDAYYLLLLRNFFKTIP 169 +V ++ M + ++PLFL+++++GL+N +IL S A+ + ++NFF +P Sbjct: 116 LFLVTILLMALPQQIVVVPLFLLLKNLGLINTFPGIILVHSAWGMAWIIFFMKNFFDILP 175 Query: 170 TSIMEAAEIDGCKPFTVFWRIVLPLSKPGLAAIGLFYLVMYWSQFFEYILFLPTKPQWHN 229 + EAA +DG F +F++IVLP+S PG+ + + WS FF ++FL +W Sbjct: 176 REVEEAARVDGASDFRIFYKIVLPMSLPGILSASVLQFTWVWSSFFFELIFLIDPSKW-- 233 Query: 230 FQVFLRNVVIESETQGFEGFAFATQSLKNAVVVASMIPVLIAYPFVQKYFVKGINIGAVK 289 VI +G L A V +M L Y +Q+Y+++G A K Sbjct: 234 --------VITQRIANMKGTYLVDWGLIAAGSVFAMAVPLAVYMLLQRYYIRGFVGWAAK 285 Query: 290 G 290 G Sbjct: 286 G 286 >gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyrum pernix K1] Length = 302 Score = 67.4 bits (163), Expect = 4e-13 Identities = 56/230 (24%), Positives = 107/230 (46%), Gaps = 33/230 (14%) Query: 80 VSLYTTTLGTIIALMTTA---LFAYALAQDNLPGKGFFLMVALITMVFRA-----GMIPL 131 ++L T T+ +AL T L AY++++ G+G F ++ F G+ + Sbjct: 87 MTLVTLTVAVGVALTATLVSLLAAYSISRMEFKGRGVFTAGLIMLHAFPGVALIIGVYMI 146 Query: 132 FLVVRDI-GLLNN----VWAVILSRCV--DAYYLLLLRNFFKTIPTSIMEAAEIDGCKPF 184 F ++ D+ G+L + +IL+R + L + FF IP + +A +DG Sbjct: 147 FRIIGDVLGVLGEEFYAIAYIILARAALEVPMAIWLFKGFFDKIPWELEWSALVDGASRV 206 Query: 185 TVFWRIVLPLSKPGLAAIGLFYLVMYWSQFFEYILFLPTKPQWHNFQVFLRNVVIESETQ 244 V+W I++PL KPG+AA+ +F + W +F F VFL+ I+S Sbjct: 207 RVWWSILVPLVKPGIAAVLIFTFLAGWEEFI-------------YFYVFLKPFGIDSLPT 253 Query: 245 GFEGFAFATQSLKNAVVVAS----MIPVLIAYPFVQKYFVKGINIGAVKG 290 E A ++ + ++ A+ ++P ++ + Q+ ++ + G +KG Sbjct: 254 FIEEIVAAAENYQLTIIAAAGTFYLLPTIVFFVLTQRLLLEAYS-GGLKG 302 >gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum pernix K1] Length = 270 Score = 59.7 bits (143), Expect = 8e-11 Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 20/230 (8%) Query: 56 LPEKFTLDAYRNLLSRPALYRPFLVSLYTTTLGTIIALMTTALFAYALAQDNLPGKGFFL 115 L FTLD + L A FL S+ + I+ + YALA+ PG+ Sbjct: 48 LTTSFTLDHVKTLWILGA-GEAFLRSVAVGAMTVGISFLLGLPGGYALARYVFPGRDAVK 106 Query: 116 MVALITMVFRAGMIPLFLVVR--DIGLLNNVWAVILSRCVDA--YYLLLLRNFFKTIPTS 171 + + T +F +I + L+ ++GL + + + L+ A + +++ + F IP Sbjct: 107 LAIIATRMFPIIVISVSLLKTFFNLGLNDTLIGLALAHTAMALPFVVIITGSIFGGIPRD 166 Query: 172 IMEAAEIDGCKPFTVFWRIVLPLSKPGLAAIGLFYLVMYWSQ-FFEYILFLPTKPQWHNF 230 + EA I G VF RI LPL+ PGL A G+F ++ W++ F +L L + Sbjct: 167 LEEAGMIFGLSSIMVFLRITLPLAAPGLTAAGMFTFLLSWNEVFMASVLTLVNR----TL 222 Query: 231 QVFLRNVVIESETQGFEGFAFATQSLKNAVVVASMIPVLIAYPFVQKYFV 280 F+ N FA + ++ A ++P L+ ++Y V Sbjct: 223 PAFILN----------SAFATPIEPIRFAAAFMLILPALVFMFLARRYLV 262 >gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease ModB [Aeropyrum pernix K1] Length = 261 Score = 43.9 bits (102), Expect = 5e-06 Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 14/138 (10%) Query: 76 RPFLVSLYTTTLGTIIALMTTALFAYALAQDN-----LPGKGFFLMVAL-------ITMV 123 R ++SL ++T+ +++A+ AYA+A+ L + L++++ ++ Sbjct: 46 RSLVLSLGSSTISSVLAVTLATAPAYAMARQEGRLTRLISQLHLLLLSIPPVGLGTAALI 105 Query: 124 FRAGMIPLFLVVRDIGLLNNVWAVILSRCV--DAYYLLLLRNFFKTIPTSIMEAAEIDGC 181 PL + +GL + AVIL++ + + +L F +P + EAAE G Sbjct: 106 LFTRYPPLNSISETLGLFFSPKAVILAQLLVTTPIAVSMLTGVFSMVPRELEEAAEAYGA 165 Query: 182 KPFTVFWRIVLPLSKPGL 199 + RIVLPLS PG+ Sbjct: 166 GRLQILIRIVLPLSLPGI 183 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 42.7 bits (99), Expect = 1e-05 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Query: 167 TIPTSIMEAAEIDGCKPFTVFWRIVLPLSKPGLAAIGLFYLVMYWSQFFEYILFLPT 223 +IP+S +EAA IDG + +FW+IV PL +P A I + + M W I+++ T Sbjct: 190 SIPSSFIEAARIDGAGHWHIFWKIVFPLVRP--ATIIVVVMTMLWDLKIFDIVYVAT 244 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.332 0.144 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 248,447 Number of Sequences: 1700 Number of extensions: 9733 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 5 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 6 length of query: 290 length of database: 492,079 effective HSP length: 76 effective length of query: 214 effective length of database: 362,879 effective search space: 77656106 effective search space used: 77656106 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718143|ref|YP_003873675.1| extracellular solute-binding protein [Spirochaeta thermophila DSM 6192] (477 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 468,249 Number of Sequences: 1700 Number of extensions: 20845 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 477 length of database: 492,079 effective HSP length: 80 effective length of query: 397 effective length of database: 356,079 effective search space: 141363363 effective search space used: 141363363 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718144|ref|YP_003873676.1| hypothetical protein STHERM_c04310 [Spirochaeta thermophila DSM 6192] (462 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 529,153 Number of Sequences: 1700 Number of extensions: 26232 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 0 length of query: 462 length of database: 492,079 effective HSP length: 80 effective length of query: 382 effective length of database: 356,079 effective search space: 136022178 effective search space used: 136022178 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718145|ref|YP_003873677.1| carbohydrate kinase, PfkB family [Spirochaeta thermophila DSM 6192] (366 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600388|ref|NP_146902.1| ATP-dependent 6-phosphofructokinase... 46 1e-06 >gi|14600388|ref|NP_146902.1| ATP-dependent 6-phosphofructokinase [Aeropyrum pernix K1] Length = 310 Score = 46.2 bits (108), Expect = 1e-06 Identities = 71/317 (22%), Positives = 123/317 (38%), Gaps = 66/317 (20%) Query: 44 GGGEYNVVRGLRRCFGLKTTVVTAIPDNDLGYLLESLIGAGGVDSSHCIWLPYDGIGRQH 103 GG NV LRR G+++ ++ I +D G + + GVD S G+ Sbjct: 42 GGSAANVAVVLRR-LGVQSGIIGKIGLDDFGRIAVDNLMREGVDIS--------GLRVSL 92 Query: 104 RQALNFT------ERGFGIRGAKGVSDRAHSAASALKPGDVDWKKLFQEEGVRWFHTGGI 157 R F+ E I KG AA L+PG++D + + + V Sbjct: 93 RDRTGFSVVVRDKEGSITIYSFKG-------AAEKLEPGEIDADAIGRSKHVH------- 138 Query: 158 FAALSETTAELTVEAVKAAKEAGTVVSYDLNYRPSLWKSRGGEKEAQRINKMIVPHLDVL 217 ++ + T++ V+ AK+ VS+D + G E+ A I+K+ D++ Sbjct: 139 ---VASLRPDTTLKTVEIAKKRSITVSWDPG---RVLSKMGAERLANIISKV-----DII 187 Query: 218 IGNEEDFIAALXXXXXXXXXXXXXLNVESYKEMVQEVAKTYPNLKAIATTLREVKTATIN 277 N + N+ Y + Q +LK + + +K Sbjct: 188 FVNRNE-----------------AKNLTGYHDYRQAAR----HLKKLGPKIVVIKLGASG 226 Query: 278 GWSALLYYQGQ-FYHSIGWENLEILDRVGGGDSFASGLIYGFLEGFDPQTCVNYGAAHGA 336 + +LY G+ F +I E ++D G GDS+A+G I G L G+ + Y + Sbjct: 227 SY--ILYSDGEVFVPAIKPER--VVDTTGAGDSYAAGFIAGLLRGYTIEKASLYATIVAS 282 Query: 337 LAMTTPGDTSMASKAEV 353 + ++ G + S EV Sbjct: 283 IKVSRLGSNAAPSHEEV 299 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 391,744 Number of Sequences: 1700 Number of extensions: 17489 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 1 length of query: 366 length of database: 492,079 effective HSP length: 78 effective length of query: 288 effective length of database: 359,479 effective search space: 103529952 effective search space used: 103529952 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718146|ref|YP_003873678.1| keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase [Spirochaeta thermophila DSM 6192] (226 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 262,467 Number of Sequences: 1700 Number of extensions: 12190 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 226 length of database: 492,079 effective HSP length: 74 effective length of query: 152 effective length of database: 366,279 effective search space: 55674408 effective search space used: 55674408 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718147|ref|YP_003873679.1| xylose isomerase domain-containing protein TIM barrel [Spirochaeta thermophila DSM 6192] (291 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 292,456 Number of Sequences: 1700 Number of extensions: 12488 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 291 length of database: 492,079 effective HSP length: 76 effective length of query: 215 effective length of database: 362,879 effective search space: 78018985 effective search space used: 78018985 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718148|ref|YP_003873680.1| hypothetical protein STHERM_c04350 [Spirochaeta thermophila DSM 6192] (426 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 443,497 Number of Sequences: 1700 Number of extensions: 20181 Number of successful extensions: 67 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 0 length of query: 426 length of database: 492,079 effective HSP length: 79 effective length of query: 347 effective length of database: 357,779 effective search space: 124149313 effective search space used: 124149313 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718149|ref|YP_003873681.1| hypothetical protein STHERM_c04360 [Spirochaeta thermophila DSM 6192] (408 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 411,076 Number of Sequences: 1700 Number of extensions: 17694 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 408 length of database: 492,079 effective HSP length: 79 effective length of query: 329 effective length of database: 357,779 effective search space: 117709291 effective search space used: 117709291 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718150|ref|YP_003873682.1| hypothetical protein STHERM_c04370 [Spirochaeta thermophila DSM 6192] (290 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 287,871 Number of Sequences: 1700 Number of extensions: 12578 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 0 length of query: 290 length of database: 492,079 effective HSP length: 76 effective length of query: 214 effective length of database: 362,879 effective search space: 77656106 effective search space used: 77656106 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718151|ref|YP_003873683.1| ribosomal large subunit pseudouridine synthase C [Spirochaeta thermophila DSM 6192] (300 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 300,185 Number of Sequences: 1700 Number of extensions: 12503 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 300 length of database: 492,079 effective HSP length: 76 effective length of query: 224 effective length of database: 362,879 effective search space: 81284896 effective search space used: 81284896 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718152|ref|YP_003873684.1| hypothetical protein STHERM_c04390 [Spirochaeta thermophila DSM 6192] (157 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.140 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 161,005 Number of Sequences: 1700 Number of extensions: 6667 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 157 length of database: 492,079 effective HSP length: 70 effective length of query: 87 effective length of database: 373,079 effective search space: 32457873 effective search space used: 32457873 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718153|ref|YP_003873685.1| hypothetical protein STHERM_c04400 [Spirochaeta thermophila DSM 6192] (486 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.473 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 443,376 Number of Sequences: 1700 Number of extensions: 18538 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 0 length of query: 486 length of database: 492,079 effective HSP length: 80 effective length of query: 406 effective length of database: 356,079 effective search space: 144568074 effective search space used: 144568074 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718154|ref|YP_003873686.1| transporter [Spirochaeta thermophila DSM 6192] (440 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.142 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 520,414 Number of Sequences: 1700 Number of extensions: 26569 Number of successful extensions: 110 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110 Number of HSP's gapped (non-prelim): 0 length of query: 440 length of database: 492,079 effective HSP length: 80 effective length of query: 360 effective length of database: 356,079 effective search space: 128188440 effective search space used: 128188440 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718155|ref|YP_003873687.1| hypothetical protein STHERM_c04420 [Spirochaeta thermophila DSM 6192] (343 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.144 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 313,030 Number of Sequences: 1700 Number of extensions: 12058 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 0 length of query: 343 length of database: 492,079 effective HSP length: 78 effective length of query: 265 effective length of database: 359,479 effective search space: 95261935 effective search space used: 95261935 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718156|ref|YP_003873688.1| hypothetical protein STHERM_c04430 [Spirochaeta thermophila DSM 6192] (168 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.145 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 152,867 Number of Sequences: 1700 Number of extensions: 5868 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 168 length of database: 492,079 effective HSP length: 71 effective length of query: 97 effective length of database: 371,379 effective search space: 36023763 effective search space used: 36023763 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718157|ref|YP_003873689.1| hypothetical protein STHERM_c04440 [Spirochaeta thermophila DSM 6192] (202 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.146 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 144,319 Number of Sequences: 1700 Number of extensions: 3569 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 202 length of database: 492,079 effective HSP length: 73 effective length of query: 129 effective length of database: 367,979 effective search space: 47469291 effective search space used: 47469291 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718158|ref|YP_003873690.1| hypothetical protein STHERM_c04450 [Spirochaeta thermophila DSM 6192] (193 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.147 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 115,277 Number of Sequences: 1700 Number of extensions: 2820 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 193 length of database: 492,079 effective HSP length: 72 effective length of query: 121 effective length of database: 369,679 effective search space: 44731159 effective search space used: 44731159 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718159|ref|YP_003873691.1| hypothetical protein STHERM_c04460 [Spirochaeta thermophila DSM 6192] (362 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431394|ref|NP_147843.2| pyrimidine nucleotide reductase [A... 73 1e-14 >gi|118431394|ref|NP_147843.2| pyrimidine nucleotide reductase [Aeropyrum pernix K1] Length = 220 Score = 72.8 bits (177), Expect = 1e-14 Identities = 57/171 (33%), Positives = 81/171 (47%), Gaps = 6/171 (3%) Query: 148 RPWVVAKVAASLDGRIALPDGRSKWITGEEARWEVHRLRAGSDVLVTGIGTVLADDPAFT 207 RP+ A+LDGRIA G S E+ + H+ RA +D ++ G T + D P T Sbjct: 3 RPYTFIFSTATLDGRIASITGYSLLSCREDFELQ-HKYRASADAVMVGSRTAVLDRPRLT 61 Query: 208 VRVPGGEGRDPGVVVLDTRGRLPVGARVVREGTVVMVGPGVDAGWXXXXXXXXXXXXXXX 267 VR+ GR P VV+D+ ++P +R G+V++ G Sbjct: 62 VRL--ARGRSPLRVVVDSGLKVPPDVAGLRRGSVLVTAEGHSR--ERLKPYLERGVEVVE 117 Query: 268 IRDGKVDVQAVSRWLGEE-GVNVAMVEAGAGVTGAFLEAGMVDELVVFVAP 317 GKVD++ L E GV V MVE G G+ A LE G+VDE+ +AP Sbjct: 118 AGRGKVDLERAVAVLRERLGVRVLMVEGGGGLNCAMLEKGLVDEVRATIAP 168 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 335,031 Number of Sequences: 1700 Number of extensions: 15139 Number of successful extensions: 71 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 1 length of query: 362 length of database: 492,079 effective HSP length: 78 effective length of query: 284 effective length of database: 359,479 effective search space: 102092036 effective search space used: 102092036 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718160|ref|YP_003873692.1| riboflavin synthase subunit alpha [Spirochaeta thermophila DSM 6192] (213 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 191,349 Number of Sequences: 1700 Number of extensions: 8491 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 0 length of query: 213 length of database: 492,079 effective HSP length: 73 effective length of query: 140 effective length of database: 367,979 effective search space: 51517060 effective search space used: 51517060 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718161|ref|YP_003873693.1| riboflavin biosynthesis protein RibA [Spirochaeta thermophila DSM 6192] (432 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431291|ref|NP_147649.2| 3,4-dihydroxy-2-butanone 4-phospha... 74 7e-15 >gi|118431291|ref|NP_147649.2| 3,4-dihydroxy-2-butanone 4-phosphate synthase [Aeropyrum pernix K1] Length = 238 Score = 73.9 bits (180), Expect = 7e-15 Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 32/217 (14%) Query: 21 RAGRPLVVVDDEERENEGDVIVAAEKITPELVNFMAKEARGLICVAITEERARELDLEPM 80 R G P+++ D + RE E D++ A +T V + A GLIC +E R L L P Sbjct: 21 RNGMPVMIYDGDRREGEVDLVYYAGSVTWREVYTLRTLAGGLICFVTSERVGRLLGL-PF 79 Query: 81 TPE---NQDTLET------------AFTVSVDAVGTGTGISAHDRALTTRKL-------- 117 E +Q++L AF++ V+ V TGIS DR +T L Sbjct: 80 AQELLLSQESLAPLASKTPGYGDPPAFSIWVNHVSVKTGISDEDRGITISGLHRVVEKAY 139 Query: 118 --VDPEARP---EDFRRPGHVFPLRAKPGGVLRRAGHTEAAVDLARLAGLYPAGVICEIM 172 + EAR E+F PGHV L A+ + RR GHTE V L RLAGL P+ VI E++ Sbjct: 140 SGLVGEARRMLREEFMSPGHVPILLAR--SLDRRRGHTELTVALGRLAGLPPSFVIAEML 197 Query: 173 KDDGSMARLPDLVDYCRRHGLKLISIAQLIDYRRRQE 209 + S+ L + R + L+ ++++ R E Sbjct: 198 GERWSLG-LREAEAIARERRIPLLRGEEIVEACSRGE 233 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 448,035 Number of Sequences: 1700 Number of extensions: 20702 Number of successful extensions: 65 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 63 Number of HSP's gapped (non-prelim): 1 length of query: 432 length of database: 492,079 effective HSP length: 79 effective length of query: 353 effective length of database: 357,779 effective search space: 126295987 effective search space used: 126295987 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718162|ref|YP_003873694.1| 6,7-dimethyl-8-ribityllumazine synthase [Spirochaeta thermophila DSM 6192] (156 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431428|ref|NP_147899.2| 6,7-dimethyl-8-ribityllumazine syn... 58 1e-10 >gi|118431428|ref|NP_147899.2| 6,7-dimethyl-8-ribityllumazine synthase [Aeropyrum pernix K1] Length = 147 Score = 57.8 bits (138), Expect = 1e-10 Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 10/147 (6%) Query: 13 GKGLSFAIVASRFNEFITTKLIEGAMDALVRHDVDPAQVDLVW-VPGSFEIPLTAKRLAA 71 G + AIV S FN +T + E A+D A+V LV PG+F+ P RL A Sbjct: 4 GDKIRIAIVVSEFNYDVTRVMEEKAID---HARFLGAEVSLVARSPGTFDTPFIVSRLLA 60 Query: 72 S-GKYHAVICLGAVIRGATPHFDYVAAEVAKGVALAGLETGLPVIFGVLTTDTIE-QAVE 129 + + AV LGAVI+G T H + VA + A+ + +E G PV G++ +A+E Sbjct: 61 THSEVDAVAVLGAVIKGDTKHDEVVAHQAARKLLDLSIEYGKPVTLGIIGPGASRLEAIE 120 Query: 130 RAGTKAGNKGWDAAVSAIEMANLFSQL 156 RA A A SA+++A +L Sbjct: 121 RAEEYARR----AVESAVKLARRSKEL 143 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 159,524 Number of Sequences: 1700 Number of extensions: 6639 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 1 length of query: 156 length of database: 492,079 effective HSP length: 70 effective length of query: 86 effective length of database: 373,079 effective search space: 32084794 effective search space used: 32084794 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718163|ref|YP_003873695.1| hypothetical protein STHERM_c04500 [Spirochaeta thermophila DSM 6192] (330 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602037|ref|NP_148583.1| translation factor [Aeropyrum perni... 171 2e-44 >gi|14602037|ref|NP_148583.1| translation factor [Aeropyrum pernix K1] Length = 367 Score = 171 bits (434), Expect = 2e-44 Identities = 124/325 (38%), Positives = 152/325 (46%), Gaps = 26/325 (8%) Query: 29 FPTETVYGLGANALDAVAVARIFEIKERPLFDPLIVHIAEEGMLKEVVREVPSIARRLMA 88 FPTETVYGLGA+AL+ A ARIFE+K RP +PLIVH++ M + V E+P A RL+ Sbjct: 41 FPTETVYGLGADALNPRAAARIFEVKGRPPDNPLIVHVSSLEMARTVA-EIPGKALRLVE 99 Query: 89 RFWPGPLTLVLPKGERVPGIVTAGLPTVGVRMPAHPVARRLIERAGVPIAAPSANRFGSL 148 + WPGPLTLVLP+ VP IVTAGL TV VRMPAH VA L++ AG P+AAPSAN G Sbjct: 100 KLWPGPLTLVLPRKPVVPDIVTAGLETVAVRMPAHKVALELVKAAGRPVAAPSANPSGRP 159 Query: 149 SPTRAGHVAGQLGGRVALVLDGGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 208 SPT HV L V ++LD G Sbjct: 160 SPTSGEHVIRDLDCMVDVILDAGETYFGVESTIIDLTRTPPVLLRPGPIPVEVLERLLEE 219 Query: 209 XXXXXXXXXXXXXQE---APGMLPWHYAPSVPVVVLEGGAMPXXXXXXXXXXXXXXXVPA 265 + APGM HYAP P+++++ Sbjct: 220 KILVPPEARGLRAADRPLAPGMKYRHYAPDTPLILVDTSPGAVERIVEAAVREVARARGL 279 Query: 266 RPA----------------FRAVEV-----LSPRGDLQEAAARLFEGLHRLEEAG-VARI 303 R A R VE L P D AA RLF+ L R++E G + Sbjct: 280 RVALVGPDELVDVVALLLRLRGVEPAAIFRLGPLADTTVAARRLFKTLRRIDELGNIDVA 339 Query: 304 YAEAVPEVGLGRAVMDRLRKAARRR 328 PE G+G AVM+RLRKAA RR Sbjct: 340 IVLPFPERGIGLAVMNRLRKAASRR 364 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 299,757 Number of Sequences: 1700 Number of extensions: 13532 Number of successful extensions: 75 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 3 length of query: 330 length of database: 492,079 effective HSP length: 77 effective length of query: 253 effective length of database: 361,179 effective search space: 91378287 effective search space used: 91378287 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718164|ref|YP_003873696.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Spirochaeta thermophila DSM 6192] (340 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 395,618 Number of Sequences: 1700 Number of extensions: 19612 Number of successful extensions: 63 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63 Number of HSP's gapped (non-prelim): 0 length of query: 340 length of database: 492,079 effective HSP length: 77 effective length of query: 263 effective length of database: 361,179 effective search space: 94990077 effective search space used: 94990077 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718165|ref|YP_003873697.1| hypothetical protein STHERM_c04520 [Spirochaeta thermophila DSM 6192] (194 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 222,464 Number of Sequences: 1700 Number of extensions: 10052 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 194 length of database: 492,079 effective HSP length: 72 effective length of query: 122 effective length of database: 369,679 effective search space: 45100838 effective search space used: 45100838 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718166|ref|YP_003873698.1| monogalactosyldiacylglycerol synthase [Spirochaeta thermophila DSM 6192] (382 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 434,189 Number of Sequences: 1700 Number of extensions: 21150 Number of successful extensions: 78 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78 Number of HSP's gapped (non-prelim): 0 length of query: 382 length of database: 492,079 effective HSP length: 78 effective length of query: 304 effective length of database: 359,479 effective search space: 109281616 effective search space used: 109281616 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718167|ref|YP_003873699.1| hypothetical protein STHERM_c04540 [Spirochaeta thermophila DSM 6192] (446 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 459,032 Number of Sequences: 1700 Number of extensions: 20263 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 446 length of database: 492,079 effective HSP length: 80 effective length of query: 366 effective length of database: 356,079 effective search space: 130324914 effective search space used: 130324914 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718168|ref|YP_003873700.1| hypothetical protein STHERM_c04550 [Spirochaeta thermophila DSM 6192] (226 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.138 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 212,926 Number of Sequences: 1700 Number of extensions: 7675 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 226 length of database: 492,079 effective HSP length: 74 effective length of query: 152 effective length of database: 366,279 effective search space: 55674408 effective search space used: 55674408 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718169|ref|YP_003873701.1| RNA polymerase sigma-70 factor family protein [Spirochaeta thermophila DSM 6192] (303 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.132 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 261,367 Number of Sequences: 1700 Number of extensions: 10182 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 303 length of database: 492,079 effective HSP length: 76 effective length of query: 227 effective length of database: 362,879 effective search space: 82373533 effective search space used: 82373533 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718170|ref|YP_003873702.1| pyruvate, phosphate dikinase [Spirochaeta thermophila DSM 6192] (887 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431137|ref|NP_147390.2| phosphoenolpyruvate synthase [Aero... 152 4e-38 gi|14600396|ref|NP_146910.1| hypothetical protein APE_0026 [Aero... 64 2e-11 gi|14600397|ref|NP_146911.1| hypothetical protein APE_0028 [Aero... 49 7e-07 >gi|118431137|ref|NP_147390.2| phosphoenolpyruvate synthase [Aeropyrum pernix K1] Length = 820 Score = 152 bits (383), Expect = 4e-38 Identities = 226/914 (24%), Positives = 349/914 (38%), Gaps = 174/914 (19%) Query: 15 EGSAKMRDLLGGKGANLAEMTSIGIPVPPGFTISTEVCELYYKNDKQYPPEVREQVEEAL 74 E S + L+GGK A L EM GIPVPPGF +++E + + ++ +EE + Sbjct: 11 EISKDLLPLVGGKAAGLGEMIKAGIPVPPGFVVTSEAYRRFVF-ETGIAGFIKHILEETI 69 Query: 75 AKLEKAMGRKLGDPENPLFVSVRSGAAISMPGMMETILNLGMNDQTVEGFARQTGNPRVA 134 K + FV MP + R Sbjct: 70 VSGRPEEYEKASELIRSKFVRT------PMPPYLR----------------------RAI 101 Query: 135 WDSYRRFIQMFGSVVKGIPHEEFEKVLEGLKQERGVELDTELTADDLKEL-VSRYMKLYK 193 D+YR+ G++V G+++ R V + + T +DL E + + Y Sbjct: 102 VDAYRKL----GTLV-------------GVEEPR-VAVRSSATVEDLPEASFAGQQETYL 143 Query: 194 EKVGEEFPQDVKAQLWAAIDAVFDSWDNERARKYREINNIRGLKGT-AVNVQAMVFGNFG 252 GEE + WA++ W RA YR+ NI AV VQ MV Sbjct: 144 NVKGEEEVVEKVKTAWASL------W-TARALSYRDSLNIDHETALMAVVVQKMV----- 191 Query: 253 DDSGTGVCFSRDPSTGENVFYGEFLMNAQGEDVVAGIRTPEKL----------------- 295 +GV F+ P TGE + GE +V G TP++ Sbjct: 192 SSRSSGVMFTIHPVTGEEDKIVIESIWGLGEYIVGGKVTPDRFVVSKSDLEILEVRISRK 251 Query: 296 -----------SGLAEKMPEVYAQLEEVKNRLERHYRDMQDMEFTIEKGRLFLLQTRNGK 344 + K+PE +LE+++ + H + +E + L + K Sbjct: 252 DKALFYDPDLNENVEIKIPESGEELEDLRRK---HPAVAEVVEKYGIRPDAPSLSEKEVK 308 Query: 345 RTGRAAVKI----AVDMVKEGLISREEA------VMRVSPEHI-----DQLLHPMLDPEX 389 R A+K+ A M E I E + +++ PE + ++ + E Sbjct: 309 ELARLAIKVENHFARPMDIEWAIDFELSPPENILLLQARPETVWSRKKEEAEAKPPEEEA 368 Query: 390 XXXXXXXXXGLNASPGAATGKIVFTARRAEELAGVEKV-ILVRKETSPEDIGGMYAAQGI 448 G+ ASPG A+G++ E +EK +LV K T P+ + M A I Sbjct: 369 VPEGEVLVRGVPASPGVASGRVKVALTVEEAAKKMEKGDVLVTKMTDPDWVPYMKMASAI 428 Query: 449 LTSTGGMTSHAAVVARGMGKPSVVGCKDVVILDEGRCEIGGREFKEGDWITIDGTTGEVF 508 +T GGMT+HAA+VAR +G P+VVG D ++ K+G +T+DG+ G V+ Sbjct: 429 VTDEGGMTAHAAIVARELGIPAVVGTGDAT-----------KKLKDGMLVTVDGSRGVVY 477 Query: 509 EGQIPLVVPEIRGELQEFLGWVDEIRLSAVRENCPEKGFRVRTNADTPQDARRAREFGAE 568 G + E V E+ + E P ++ N P++ R + E Sbjct: 478 AGAVKTEEAREEEARPELGAAVAEV----LSEVYPVTATKIYMNLGHPEEIDRYKHLPFE 533 Query: 569 GIGLCRTEHMFFDKGKIEAFREMIIXXXXXXXXXXXXXXXXXQKEDFVGIFHEMAGLPVT 628 GIGL R E F + M + E + + PV Sbjct: 534 GIGLMRIE---FIISSWIGYHPMYLIEQGRGVYFIDKLA-----EGVAKVASAIYPRPVV 585 Query: 629 IRLLDPPLHEFVLMSETEIEELSRSSGVPAEKIRQRIEALHEMNPMLGHRGCRLGI--TY 686 +R D +E+ + K ++ E L E NPM+G RG I Y Sbjct: 586 VRFSDFKTNEYRRL-----------------KGGEKYETLDERNPMIGWRGVSRYIHPNY 628 Query: 687 PEIYEMQARAVMLAACEVAKEGKPVYPEVMIPLVGMEKELVFLKERIVKVMEEVKSSSGV 746 + ++ RA+ +V +E VM P V EL ER +K+MEE S G Sbjct: 629 EPAFRLEVRAIK----KVREEWGLKNVWVMFPFVRTTWEL----ERALKIMEEEGLSRG- 679 Query: 747 QVSYRVGTMIEVPRAALVAEKIASHAEFFSFGTNDLTQMTFGFSRDDVGSFLPAYLQMEI 806 ++V M+EVP +A++ A + FS G+NDLTQ+ G RD Y Sbjct: 680 -RDFKVWIMVEVPSTVFLADEFAKMVDGFSIGSNDLTQLVLGVDRDSGFLAKMGYFD--- 735 Query: 807 LETDPFASLDEEGVGQLVKLAAEKGRKARPGIKLGICGEHGG-DPASIDFAYRVGLDYVS 865 E DP V + +++ EK G + ICG+ P ++F R G+D +S Sbjct: 736 -ERDP-------AVLRSIEILIEKAHS--QGATVSICGQGPSVYPELVEFLVRRGIDSIS 785 Query: 866 CSPFRVPIARLAAA 879 +P V R A Sbjct: 786 VNPDAVVRVRRQVA 799 >gi|14600396|ref|NP_146910.1| hypothetical protein APE_0026 [Aeropyrum pernix K1] Length = 622 Score = 63.9 bits (154), Expect = 2e-11 Identities = 83/350 (23%), Positives = 140/350 (40%), Gaps = 103/350 (29%) Query: 15 EGSAKMRDLLGGKGANLAEMTSIGIPVPPGFTISTEVCELYYKNDKQYPPEVREQVEEAL 74 + + K+ ++GGK A+L E+ G+PVPPGF ++T +L+ + + ++ +E Sbjct: 15 DATRKIIHMVGGKAASLGELLEHGLPVPPGFVVTTRAYDLFVEKN-----GLKSVIENFS 69 Query: 75 AKLEKAMGRKLGDPENPLFVSVRSGAAISMPGMMETILNLGMNDQTVEGFAR---QTGNP 131 + A+ R+L IL + + VE G+ Sbjct: 70 GANQAAILRRL-------------------------ILEGEVPREVVEAIREAYYSRGDG 104 Query: 132 RVAWDSYRRFIQMFGSVVKGIPHEEFEKVLEGLKQERGVELDTELTADDLKELVSRYMKL 191 RVA S + V+ +P F + DT L + + +V K Sbjct: 105 RVAVRS--------SATVEDLPEAAF-----------AGQHDTFLNVEGIDRVVEAVKKC 145 Query: 192 YKEKVGEEFPQDVKAQLWAAIDAVFDSWDNERARKYREINNIRGLKG-TAVNVQAMVFGN 250 + A LW+ +RA YRE + K AV VQ MV Sbjct: 146 W-------------ASLWS-----------DRAVAYRESLGVSHSKAKMAVIVQRMV--- 178 Query: 251 FGDDSGTGVCFSRDPSTG--ENVFYGEFLMNAQGEDVVAGIRTPE--------------- 293 D +GV F+ +P TG E V F GE +V+G+ TP+ Sbjct: 179 --DADVSGVMFTANPVTGVREEVVVNAF--RGLGESIVSGVVTPDHYVLVKTRFGWKIVE 234 Query: 294 -KLSGLAEKMPE-VYAQLEEVKNRLERHYRDMQDMEFTIEKGRLFLLQTR 341 ++SG + + +L + R++R + QD+E+ +EKGR+++LQ+R Sbjct: 235 KRISGDKPVLDDRTLVRLASIGARIQRLFGTPQDIEWALEKGRIYILQSR 284 >gi|14600397|ref|NP_146911.1| hypothetical protein APE_0028 [Aeropyrum pernix K1] Length = 218 Score = 48.5 bits (114), Expect = 7e-07 Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 15/113 (13%) Query: 399 GLNASPGAATG--KIVFTARRAEELAGVEKVILVRKETSPEDIGGMYAAQGILTSTGGMT 456 G+ ASPG A G KIV A +L + ILV T+P A ++T TGG Sbjct: 118 GIPASPGIAVGTVKIVRDASEFHKLRHGD--ILVAPFTTPAWTPLFRVAAAVVTDTGGPL 175 Query: 457 SHAAVVARGMGKPSVVGCKDVVILDEGRCEIGGREFKEGDWITIDGTTGEVFE 509 SHAA+ AR G P+VVG + + K+G + +DG G V++ Sbjct: 176 SHAALTAREYGIPAVVG-----------TGLATKVLKDGMRVRVDGYRGAVYK 217 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 910,887 Number of Sequences: 1700 Number of extensions: 42594 Number of successful extensions: 185 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 175 Number of HSP's gapped (non-prelim): 6 length of query: 887 length of database: 492,079 effective HSP length: 85 effective length of query: 802 effective length of database: 347,579 effective search space: 278758358 effective search space used: 278758358 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718171|ref|YP_003873703.1| hypothetical protein STHERM_c04580 [Spirochaeta thermophila DSM 6192] (253 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430904|ref|NP_147001.2| endonuclease III [Aeropyrum pernix... 73 8e-15 gi|118431238|ref|NP_147565.2| U/G and T/G mismatch-specific DNA ... 62 1e-11 >gi|118430904|ref|NP_147001.2| endonuclease III [Aeropyrum pernix K1] Length = 229 Score = 72.8 bits (177), Expect = 8e-15 Identities = 60/186 (32%), Positives = 84/186 (45%), Gaps = 14/186 (7%) Query: 70 FEIAVGAVLVQNTAWTNARRALAVLLERSLCSPERILGLEEEALARLIRPCGYYTLKARR 129 F + VL QNT N+ RA L + +PE IL + L IR G KA Sbjct: 43 FAVLAAVVLSQNTNDKNSIRAYLKLRQTIGVTPEAILEASYDDLVEAIREAGLPRQKASA 102 Query: 130 LAHLARFFLSCDG-------LPE--RNALLGVWGVGRETADSILLYGYGVP-VFVVDAYT 179 L LA + G PE R L+ + G+G +TAD L P VF VD + Sbjct: 103 LKALAEAVVRWGGENYLLKAPPEELREKLMSIRGIGPKTADVFLSLVRKAPGVFAVDTHA 162 Query: 180 RRIFSRLGLLASDDTPYEEVRSAVEEAVPPDHVCYNEFHALLVEHAKRFCR-KRPLCGEC 238 R+ R GL+ + Y+E+ A+ P + E H L++ + +C+ +RP C EC Sbjct: 163 ARVARRWGLV-GEKAGYDEISKALYNYFGPGN--SEEAHRLIIALGRTYCKARRPRCREC 219 Query: 239 PLRLEC 244 PLR C Sbjct: 220 PLRSVC 225 >gi|118431238|ref|NP_147565.2| U/G and T/G mismatch-specific DNA glycosylase [Aeropyrum pernix K1] Length = 223 Score = 62.4 bits (150), Expect = 1e-11 Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 12/187 (6%) Query: 72 IAVGAVLVQNTAWTNARRALAVLLE--RSLCSPERILGLEEEALARLIRPCGYYTLKARR 129 I V A L++ T AR+ + V E R +P+ + E+ + LIRP G +A+ Sbjct: 39 ILVAAFLLRKTT---ARQVVRVYEEFLRRYPNPKALASAREDEVRELIRPLGIEHQRAKH 95 Query: 130 LAHLARFFLSCDG--LP-ERNALLGVWGVGRETADSILLYGYGVPVFVVDAYTRRIFSR- 185 L LA+ + G +P + L + GVG A +LL G P ++D RI R Sbjct: 96 LIELAKHIEARYGGRIPCSKEKLKELPGVGDYIASEVLLAACGSPEPLLDRNMIRILERV 155 Query: 186 LGLLASDDTPYEEVR--SAVEEAVPPDHVCYNEFHALLVEHAKRFC-RKRPLCGECPLRL 242 LG+ ++ P+ + + S VP D EF+ +++ A++ C ++PLC ECPL Sbjct: 156 LGVKSAKKRPHTDPKMWSTARRIVPKDPDMAKEFNYGMLDLARKICTARKPLCTECPLND 215 Query: 243 ECAHLSS 249 C + ++ Sbjct: 216 ICIYYNN 222 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 300,650 Number of Sequences: 1700 Number of extensions: 14699 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 2 length of query: 253 length of database: 492,079 effective HSP length: 75 effective length of query: 178 effective length of database: 364,579 effective search space: 64895062 effective search space used: 64895062 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718172|ref|YP_003873704.1| D-mannonate oxidoreductase [Spirochaeta thermophila DSM 6192] (272 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] 96 7e-22 gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum... 69 1e-13 >gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] Length = 260 Score = 96.3 bits (238), Expect = 7e-22 Identities = 75/247 (30%), Positives = 122/247 (49%), Gaps = 17/247 (6%) Query: 26 AFAVALAGSGAKVAIWGRGKT-VPVEASXXXXXXXXXXXXXXIGCAVDTGDMEAVERGFQ 84 A A+ LA +GA++ ++ R + + AS G + GD ++R F+ Sbjct: 22 ASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGD---IDRLFE 78 Query: 85 EVEERLGTPTVLINGVGGNRGKAGFLEMDVSWFEDVFRLNLMSGMVIPTQVFGRRWVEKK 144 + + LG +L+ GG R F+E+ V +++ +RL S + + GRR E+ Sbjct: 79 KARD-LGGADILVYSTGGPR-PGRFMELGVEDWDESYRLLARSAVWV-----GRRAAEQM 131 Query: 145 VQ---GSVVNIASMASYKPLSGVXXXXXXXXXVMNLTMGLAKELAPHGIRVNAIAPGFFV 201 V+ G +V I S+ +P + V+ + LA ELAPHG+ VNA+ P + Sbjct: 132 VEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLIL 191 Query: 202 GHQNRELLYDDYQAGKLS--DRGRQIIARTPFGRFGEEEDLYGAVIFLASRKASGFVTGV 259 + R L + + ++ + + + +R P GR G+ E+L V FLAS KAS F+TG Sbjct: 192 TDRVRSLAEERARRSGITVEEALKSMASRIPMGRVGKPEELASVVAFLASEKAS-FITGA 250 Query: 260 TIPVDGG 266 IPVDGG Sbjct: 251 VIPVDGG 257 >gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum pernix K1] Length = 250 Score = 69.3 bits (168), Expect = 1e-13 Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 13/198 (6%) Query: 71 VDTGDMEAVERGFQEVEERLGTPTVLINGVGGNRGKAGFLEMDVSWFEDVFRLNLMSGMV 130 VD GD ++V V E + VL+N G + G E +S +E+ R+NL +G+ Sbjct: 61 VDVGDPDSVTEMSSRVGELIPHLNVLVNAAGVLQ-LGGIEETSISEWEETLRVNL-TGVY 118 Query: 131 IPTQVFGRRWVEKKVQGSVVNIASMASY--KPLSGVXXXXXXXXXVMNLTMGLAKELAPH 188 + T++ + K S+VN+AS+A ++GV V+ LT LA +LA + Sbjct: 119 LVTKLL-LPLLRKAKWASIVNVASIAGETGNVVAGVAYSASKAG-VIGLTKRLAVQLAGY 176 Query: 189 GIRVNAIAPGFFVGHQNRELLYDDYQAGKLSDRGRQIIARTPFGRFGEEEDLYGAVIFLA 248 GIRVNA+AP F R L ++ +I + P + ED+ A++FLA Sbjct: 177 GIRVNAVAPSFVETDMTRSFL-------DTPEKRERIASLHPLKIILKPEDVAEAILFLA 229 Query: 249 SRKASGFVTGVTIPVDGG 266 + S +TG + ++ G Sbjct: 230 DPRRSRGITGHVLSINAG 247 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 255,325 Number of Sequences: 1700 Number of extensions: 10669 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 2 length of query: 272 length of database: 492,079 effective HSP length: 75 effective length of query: 197 effective length of database: 364,579 effective search space: 71822063 effective search space used: 71822063 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718173|ref|YP_003873705.1| uronate isomerase [Spirochaeta thermophila DSM 6192] (469 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 503,726 Number of Sequences: 1700 Number of extensions: 23470 Number of successful extensions: 66 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66 Number of HSP's gapped (non-prelim): 0 length of query: 469 length of database: 492,079 effective HSP length: 80 effective length of query: 389 effective length of database: 356,079 effective search space: 138514731 effective search space used: 138514731 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718174|ref|YP_003873706.1| lipoyltransferase [Spirochaeta thermophila DSM 6192] (232 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 266,955 Number of Sequences: 1700 Number of extensions: 12204 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 0 length of query: 232 length of database: 492,079 effective HSP length: 74 effective length of query: 158 effective length of database: 366,279 effective search space: 57872082 effective search space used: 57872082 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718175|ref|YP_003873707.1| hypothetical protein STHERM_c04620 [Spirochaeta thermophila DSM 6192] (530 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430912|ref|NP_147012.2| lysyl-tRNA synthetase [Aeropyrum p... 179 2e-46 >gi|118430912|ref|NP_147012.2| lysyl-tRNA synthetase [Aeropyrum pernix K1] Length = 545 Score = 179 bits (453), Expect = 2e-46 Identities = 149/532 (28%), Positives = 243/532 (45%), Gaps = 43/532 (8%) Query: 11 HWAD--VTAFRIIKEKGDKPRYVCASGITPSGTVHIGNFR-EIISVELVVRALRDLG--- 64 HW D V + K Y+ G++ SG HIG R E++ E V R L G Sbjct: 4 HWVDKLVAELEAKLQNRGKDEYIFNGGLSVSGLQHIGRLRGEVLLGEAVRRELEKRGFRV 63 Query: 65 KDVRFIYSWDEYDVFRKVPKNMPNREDLETYLRMPITMVPDPWGKEESYARANEKEVEAI 124 K + +Y+ D + + + P+ + E Y+ P+ VPDP G S+ + Sbjct: 64 KQLLTLYTVDPWKGKDEQRREFPDPKAAERYVGWPLDRVPDPKGCHASWVDHFWSDFG-- 121 Query: 125 LPEVGIFPE---YIYQAKEYTSCRYAEGIRR-ALERRDVIRRILDKYRA-EPLPDSWWPV 179 P +G+F + + +E R E I L RRD IRR+++KYR +P + W P+ Sbjct: 122 -PYIGVFTDGKIEVVTTRELYKGRLKEFITTMVLPRRDEIRRVINKYRGRKPYQEGWIPL 180 Query: 180 VIFCASCHK-DTTTVEHWDGTYGLSYTCSSCGFKEALDFRRQGNVKLRWRVDWPMRWREE 238 CA C + D+T G + Y CS CG++ + KL WR++W W Sbjct: 181 EPRCARCGRIDSTEALEILGGERVRYRCSYCGYQGESSIE---DSKLNWRIEWAGVWWSL 237 Query: 239 QVDFEPAGKEHHSDGGSFDTAKQIVREVYDHEPPVTFKYDFXXXXXXXXXXXXXXXNV-- 296 VDFEP GK+H + GGS D+A ++ R + EPP Y++ Sbjct: 238 GVDFEPYGKDHATPGGSRDSAAELAR-LLGFEPPEGVWYEWVSLRAGGREADMSSSGFTG 296 Query: 297 ISLKDVLEVYQPEVVRYLFAGTRPDTEFAISFDLDVIKIYEDYDKCERIYFGKEQVDPKK 356 I+ ++ L++ P+++R+++ P T + ++ Y Y + ERIYFG E+ + Sbjct: 297 ITPREWLDIAHPQILRFIYF-LHPPTRRVVVDLSEIPSYYSQYYRAERIYFGIEEASTVE 355 Query: 357 LERE-RRTYEFSQVERAPASMPLQVPFRHMTTLVQIYEGD---LDALMAQEFPSVSGEEA 412 R RTYE S PA P Q+P+ H + Q+ + D L + + G + Sbjct: 356 ETRYLARTYELSHPSNPPAKPPSQIPYSHAAIVAQVVGPERLWTDGLERLKRAGLLGHDE 415 Query: 413 RRLR---RRAQCAWNWVTTYAPEEFRFSLRVGDESIEDLPVAHRRVVQ-RLYHLLADGWD 468 +R + A+ W YAP+ +F + D ED A RR+ + L LA+ + Sbjct: 416 YSIRWAKELLEKAYKWARRYAPKHLKF--EIPDSPPED---ALRRIEKPDLLEKLAEVLE 470 Query: 469 SLD---EVKLGEAIYAFCEEEGIAA---REFFPSLYRVLLGKDRGPRAASFI 514 S++ E ++ +A+ F EG+++ R F+ Y ++G+ GPRAA + Sbjct: 471 SVEEWSEERIKQALVEF--GEGMSSSERRRFYRDFYLAIVGRPEGPRAAPLL 520 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 543,117 Number of Sequences: 1700 Number of extensions: 25109 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 1 length of query: 530 length of database: 492,079 effective HSP length: 81 effective length of query: 449 effective length of database: 354,379 effective search space: 159116171 effective search space used: 159116171 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718176|ref|YP_003873708.1| hypothetical protein STHERM_c04630 [Spirochaeta thermophila DSM 6192] (566 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 521,204 Number of Sequences: 1700 Number of extensions: 21108 Number of successful extensions: 63 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63 Number of HSP's gapped (non-prelim): 0 length of query: 566 length of database: 492,079 effective HSP length: 82 effective length of query: 484 effective length of database: 352,679 effective search space: 170696636 effective search space used: 170696636 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718177|ref|YP_003873709.1| hypothetical protein STHERM_c04640 [Spirochaeta thermophila DSM 6192] (108 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 107,387 Number of Sequences: 1700 Number of extensions: 4062 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 108 length of database: 492,079 effective HSP length: 65 effective length of query: 43 effective length of database: 381,579 effective search space: 16407897 effective search space used: 16407897 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718178|ref|YP_003873710.1| hypothetical protein STHERM_c04650 [Spirochaeta thermophila DSM 6192] (519 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 524,858 Number of Sequences: 1700 Number of extensions: 23587 Number of successful extensions: 83 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83 Number of HSP's gapped (non-prelim): 0 length of query: 519 length of database: 492,079 effective HSP length: 81 effective length of query: 438 effective length of database: 354,379 effective search space: 155218002 effective search space used: 155218002 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718179|ref|YP_003873711.1| hypothetical protein STHERM_c04660 [Spirochaeta thermophila DSM 6192] (250 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.469 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 208,979 Number of Sequences: 1700 Number of extensions: 7695 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 250 length of database: 492,079 effective HSP length: 75 effective length of query: 175 effective length of database: 364,579 effective search space: 63801325 effective search space used: 63801325 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718180|ref|YP_003873712.1| hypothetical protein STHERM_c04670 [Spirochaeta thermophila DSM 6192] (706 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 709,382 Number of Sequences: 1700 Number of extensions: 32872 Number of successful extensions: 86 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86 Number of HSP's gapped (non-prelim): 0 length of query: 706 length of database: 492,079 effective HSP length: 83 effective length of query: 623 effective length of database: 350,979 effective search space: 218659917 effective search space used: 218659917 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718181|ref|YP_003873713.1| hypothetical protein STHERM_c04680 [Spirochaeta thermophila DSM 6192] (276 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.138 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 308,350 Number of Sequences: 1700 Number of extensions: 14303 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 276 length of database: 492,079 effective HSP length: 76 effective length of query: 200 effective length of database: 362,879 effective search space: 72575800 effective search space used: 72575800 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718182|ref|YP_003873714.1| rubrerythrin [Spirochaeta thermophila DSM 6192] (191 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.133 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 179,837 Number of Sequences: 1700 Number of extensions: 7056 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 191 length of database: 492,079 effective HSP length: 72 effective length of query: 119 effective length of database: 369,679 effective search space: 43991801 effective search space used: 43991801 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718183|ref|YP_003873715.1| rubredoxin [Spirochaeta thermophila DSM 6192] (54 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.145 0.506 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,112 Number of Sequences: 1700 Number of extensions: 2641 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 54 length of database: 492,079 effective HSP length: 27 effective length of query: 27 effective length of database: 446,179 effective search space: 12046833 effective search space used: 12046833 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718184|ref|YP_003873716.1| hypothetical protein STHERM_c04710 [Spirochaeta thermophila DSM 6192] (152 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.136 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 159,593 Number of Sequences: 1700 Number of extensions: 6562 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 152 length of database: 492,079 effective HSP length: 69 effective length of query: 83 effective length of database: 374,779 effective search space: 31106657 effective search space used: 31106657 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718185|ref|YP_003873717.1| acetyl xylan esterase [Spirochaeta thermophila DSM 6192] (324 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 329,658 Number of Sequences: 1700 Number of extensions: 13548 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 324 length of database: 492,079 effective HSP length: 77 effective length of query: 247 effective length of database: 361,179 effective search space: 89211213 effective search space used: 89211213 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718186|ref|YP_003873718.1| hypothetical protein STHERM_c04740 [Spirochaeta thermophila DSM 6192] (445 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 477,513 Number of Sequences: 1700 Number of extensions: 22518 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 0 length of query: 445 length of database: 492,079 effective HSP length: 80 effective length of query: 365 effective length of database: 356,079 effective search space: 129968835 effective search space used: 129968835 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718187|ref|YP_003873719.1| asparaginyl-tRNA synthetase [Spirochaeta thermophila DSM 6192] (457 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431776|ref|NP_148450.2| aspartyl-tRNA synthetase [Aeropyru... 157 4e-40 >gi|118431776|ref|NP_148450.2| aspartyl-tRNA synthetase [Aeropyrum pernix K1] Length = 442 Score = 157 bits (398), Expect = 4e-40 Identities = 123/443 (27%), Positives = 207/443 (46%), Gaps = 36/443 (8%) Query: 18 GQRLEVYGWIRSVRESKQVAFLHLSDGSTTAPLQVVVDTQRPDLASVLKELRTGAAVKVE 77 G R+ V GW +R+ ++ F+ + D S V D ++L+ + V VE Sbjct: 19 GGRVRVCGWAYRIRDLGRLKFILVRDRSGVIQATVKRGESPEDALRAAEDLKLESVVCVE 78 Query: 78 GTLRPSPGTKQPVEVHAEALTVLGPAPEDYPLQ---KKRHSFEFLREIAHLRPRTNTIGA 134 G LR +P T++ VEV E L VL E PL+ ++ S + L R + A Sbjct: 79 GELRQAP-TREGVEVKVERLEVLSTPVEPLPLEVEGSEKASLPTRLKYRWLDIRNPMVSA 137 Query: 135 VMRVRNTLAWEIHRFFQERGFLYVHTPIITTGDAEGAGALFRVTTLPPDAPYDPTEDFFG 194 + + +A ++ +GF+ + TP I E +F V +F Sbjct: 138 IFELEAMVAKVFRDYYWSQGFVEIFTPKIVAAGTESGAEVFPVV-------------YFD 184 Query: 195 APAFLTVSGQLEAEAYALAFVN-VYTFGPTFRAENSHTPRHLAEFWMVEPEMAFCDLEGD 253 AFL S Q + +A + V+ GP FRAE HT RHL E+ ++ E+ F + D Sbjct: 185 KTAFLAQSPQFYKQFAVIAGLERVFEIGPVFRAEPHHTSRHLNEYHSLDIEVGFIESYND 244 Query: 254 -MHLAQEFITHLLKAVLERHPEEMAFFEQWIAPGITDQLEAVVNTPFTHMTYTEAVEHLR 312 M+ + F+ +++ + E + + G+ +L + + + +A E L Sbjct: 245 VMNYVEGFMRAIVRMLEEDGRRVLELY------GV--ELPRIPASGIPKIPLRKAYEILE 296 Query: 313 KAPVSFTFPPEWGMDLQTEHER----YLTEELVKGPVIVTDYPKEIKAFY-MKQNPDGRT 367 + + E+G DL +E ER Y EEL V + +YP +++ FY M+++ + Sbjct: 297 E---KYGKKVEYGEDLDSEGERLMGAYAGEELDSDFVFIVEYPWKVRPFYTMRKDDEPSW 353 Query: 368 VRAMDVLVPRLGEIIGGSQREDDYERLLARMQELGMRIEAYQWYLDLRRYGGAPHAGFGL 427 + D+L L EI+ G QRE Y RLL +++ G+ E++Q+YLD ++G PH G G+ Sbjct: 354 TYSFDLLYRGL-EIVTGGQREHRYHRLLENLRDKGLDAESFQFYLDFFKHGAPPHGGAGM 412 Query: 428 GFDRLVQYVSGMQNIRDVIPFPR 450 G +R+V ++NIR+ PR Sbjct: 413 GLERIVMQTLKLENIREARMLPR 435 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 504,851 Number of Sequences: 1700 Number of extensions: 23398 Number of successful extensions: 72 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 1 length of query: 457 length of database: 492,079 effective HSP length: 80 effective length of query: 377 effective length of database: 356,079 effective search space: 134241783 effective search space used: 134241783 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718188|ref|YP_003873720.1| hypothetical protein STHERM_c04760 [Spirochaeta thermophila DSM 6192] (317 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 364,677 Number of Sequences: 1700 Number of extensions: 18256 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 317 length of database: 492,079 effective HSP length: 77 effective length of query: 240 effective length of database: 361,179 effective search space: 86682960 effective search space used: 86682960 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718189|ref|YP_003873721.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Spirochaeta thermophila DSM 6192] (553 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 605,197 Number of Sequences: 1700 Number of extensions: 28545 Number of successful extensions: 80 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80 Number of HSP's gapped (non-prelim): 0 length of query: 553 length of database: 492,079 effective HSP length: 81 effective length of query: 472 effective length of database: 354,379 effective search space: 167266888 effective search space used: 167266888 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718190|ref|YP_003873722.1| hypothetical protein STHERM_c04780 [Spirochaeta thermophila DSM 6192] (372 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 386,377 Number of Sequences: 1700 Number of extensions: 17803 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 0 length of query: 372 length of database: 492,079 effective HSP length: 78 effective length of query: 294 effective length of database: 359,479 effective search space: 105686826 effective search space used: 105686826 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718191|ref|YP_003873723.1| hypothetical protein STHERM_c04790 [Spirochaeta thermophila DSM 6192] (390 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.138 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 362,890 Number of Sequences: 1700 Number of extensions: 15897 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 390 length of database: 492,079 effective HSP length: 79 effective length of query: 311 effective length of database: 357,779 effective search space: 111269269 effective search space used: 111269269 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718192|ref|YP_003873724.1| 6-phosphogluconolactonase [Spirochaeta thermophila DSM 6192] (228 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.143 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 291,924 Number of Sequences: 1700 Number of extensions: 14859 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 228 length of database: 492,079 effective HSP length: 74 effective length of query: 154 effective length of database: 366,279 effective search space: 56406966 effective search space used: 56406966 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718193|ref|YP_003873725.1| 50S ribosomal protein L33 [Spirochaeta thermophila DSM 6192] (56 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.136 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,054 Number of Sequences: 1700 Number of extensions: 582 Number of successful extensions: 2 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 56 length of database: 492,079 effective HSP length: 28 effective length of query: 28 effective length of database: 444,479 effective search space: 12445412 effective search space used: 12445412 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718194|ref|YP_003873726.1| hypothetical protein STHERM_c04840 [Spirochaeta thermophila DSM 6192] (59 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.136 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,841 Number of Sequences: 1700 Number of extensions: 715 Number of successful extensions: 2 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 59 length of database: 492,079 effective HSP length: 31 effective length of query: 28 effective length of database: 439,379 effective search space: 12302612 effective search space used: 12302612 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718195|ref|YP_003873727.1| hypothetical protein STHERM_c04850 [Spirochaeta thermophila DSM 6192] (184 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.141 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 178,931 Number of Sequences: 1700 Number of extensions: 7003 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 184 length of database: 492,079 effective HSP length: 72 effective length of query: 112 effective length of database: 369,679 effective search space: 41404048 effective search space used: 41404048 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718196|ref|YP_003873728.1| 50S ribosomal protein L11 [Spirochaeta thermophila DSM 6192] (143 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601892|ref|NP_148436.1| 50S ribosomal protein L11 [Aeropyru... 52 5e-09 >gi|14601892|ref|NP_148436.1| 50S ribosomal protein L11 [Aeropyrum pernix K1] Length = 108 Score = 52.4 bits (124), Expect = 5e-09 Identities = 28/69 (40%), Positives = 43/69 (62%) Query: 75 PPAAVLIKKALGIEKGSAEPHKVKVGKLTKEQLRAIAEQKMPDLNANDIEAAMRIIKGTA 134 P L+ KA+ + S +P K+G L E++ IA +K PDL A ++AA++ I G+A Sbjct: 9 PSTTELLLKAVSAKAPSGDPIHQKIGDLPFEKIVEIAIEKKPDLLAKTLKAAVKTILGSA 68 Query: 135 RSMGVEVEG 143 RS+GV V+G Sbjct: 69 RSIGVTVDG 77 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.132 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 118,510 Number of Sequences: 1700 Number of extensions: 4325 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 1 length of query: 143 length of database: 492,079 effective HSP length: 69 effective length of query: 74 effective length of database: 374,779 effective search space: 27733646 effective search space used: 27733646 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718197|ref|YP_003873729.1| 50S ribosomal protein L1 [Spirochaeta thermophila DSM 6192] (226 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431765|ref|NP_148435.2| 50S ribosomal protein L1 [Aeropyru... 61 3e-11 >gi|118431765|ref|NP_148435.2| 50S ribosomal protein L1 [Aeropyrum pernix K1] Length = 217 Score = 60.8 bits (146), Expect = 3e-11 Identities = 64/216 (29%), Positives = 98/216 (45%), Gaps = 29/216 (13%) Query: 23 LERAVELVKELSYAN-FDETVELSVK---VNLKKGQT-VRGTVTLPHRFGQEKRILVFAR 77 +E A++ +L F ++VE+ V ++LK Q +R TV LP+R +E ++ V A Sbjct: 10 IEEAIDKSLKLGRGKRFKQSVEIIVALKDIDLKSPQARIRETVFLPNRPPKEAKVCVVAH 69 Query: 78 GDKAEEAREAGATYVGDTDL---------VEKIQQG--WLDFDVAVATPDMMKEVGK-LG 125 GD +A+EAG + DL V+K+ + W+ + D+M G+ LG Sbjct: 70 GDMELQAKEAGVEVLNRQDLQNLSQNKREVKKLARRCYWV-----LVRADLMGLAGRILG 124 Query: 126 PILGRRGLMPNPKVGTVTMDIKGAVENLKQGQVEFRADKTGVVHLAVGKVSMEPEKIVEN 185 P LG RG P P +IK +E K V R V +G M P ++ EN Sbjct: 125 PALGPRGKAPVPV--PPNANIKDLIERYK-AAVWVRIRNQPQVMARIGTEDMSPRELAEN 181 Query: 186 VNAALDEMRHRRPADTKGAFIKSVTLSSTMGPGVKV 221 A L + +R I + + TMGP V+V Sbjct: 182 ALAVLQVIENRLGRGK----ISRIYVKKTMGPPVEV 213 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 219,217 Number of Sequences: 1700 Number of extensions: 9262 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 1 length of query: 226 length of database: 492,079 effective HSP length: 74 effective length of query: 152 effective length of database: 366,279 effective search space: 55674408 effective search space used: 55674408 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718198|ref|YP_003873730.1| 50S ribosomal protein L10 [Spirochaeta thermophila DSM 6192] (176 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.133 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 129,971 Number of Sequences: 1700 Number of extensions: 4662 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 176 length of database: 492,079 effective HSP length: 71 effective length of query: 105 effective length of database: 371,379 effective search space: 38994795 effective search space used: 38994795 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718199|ref|YP_003873731.1| 50S ribosomal protein L7/L12 [Spirochaeta thermophila DSM 6192] (128 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.310 0.131 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,465 Number of Sequences: 1700 Number of extensions: 2828 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 128 length of database: 492,079 effective HSP length: 67 effective length of query: 61 effective length of database: 378,179 effective search space: 23068919 effective search space used: 23068919 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718200|ref|YP_003873732.1| DNA-directed RNA polymerase subunit beta [Spirochaeta thermophila DSM 6192] (1164 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601675|ref|NP_148216.1| DNA-directed RNA polymerase subunit... 181 9e-47 >gi|14601675|ref|NP_148216.1| DNA-directed RNA polymerase subunit B [Aeropyrum pernix K1] Length = 1169 Score = 181 bits (459), Expect = 9e-47 Identities = 128/413 (30%), Positives = 201/413 (48%), Gaps = 40/413 (9%) Query: 747 ELALGRNVLVAFVPWYGYNFEDAILISERLLKQDVFTSIHIKEFSIEVRETKLGPEKITR 806 E G+N++VA + + GYN EDA++ ++ + + + + ++ + G E+ Sbjct: 752 ERPAGQNMVVAIMSYTGYNIEDALIFNKGSIDMGLARAYFFRVYT-GIENEYPGGERDRI 810 Query: 807 DIPNVSEKH-------LEHLDEEGIVRIGAKVKSGSILVGKITPKSDAELTPEFKLLNSI 859 +P E + L+ +GIV +V+ G IL+G+++P P F + Sbjct: 811 TLPKPDEVYDYRGAAAYAKLEADGIVAPETEVEGGEILIGRVSP-------PRFLGEGRV 863 Query: 860 FGEKAKDVRDTSLRVPHGAEGTVIDVQRLRRSEGDELPPGVEEVVKVLVASKRKLQEGDK 919 RDTS+ + G +G V V E ++L VKV V + R + GDK Sbjct: 864 ISMATVRRRDTSIPMRLGEKGVVDMVVISTTVERNKL-------VKVRVRNLRIPEIGDK 916 Query: 920 MAGRHGNKGVISRVLPEEDMPFLADGTPVDICLNPLGVPSRMNLGQILETELGWAAVALD 979 A RHG KGVI + P DMP+ +G D+ LNP +PSRM +GQ+LE G Sbjct: 917 FASRHGQKGVIGMIFPRYDMPYTEEGIEPDVILNPHAIPSRMTVGQLLEEIAGKLGAIKG 976 Query: 980 EWY-ATPVFESASPEMIEEKLREAGLPETSKTTLYDGRTGEAFHQPVMVGYMYMLKLNHL 1038 + ATP F+ + E L+E G ++ +YDGRTG+ P+ +G Y +L H+ Sbjct: 977 RFVDATPFFKEDIDGLRIELLKE-GYDPNAREVMYDGRTGQIIEAPITIGVAYYQRLYHM 1035 Query: 1039 VDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAANTLQELLTIKSDD- 1097 V DK+HAR+TG L+T+QP GKA+ GG R GEME L +GA+ L++ + SD Sbjct: 1036 VADKIHARATGRVHLLTRQPTEGKARQGGLRFGEMERDCLVGHGASMLLRDRMLDNSDAY 1095 Query: 1098 -------------MEGRTKIYESIVKGEPS--TSPGIPESFNVLVQELRGLAL 1135 R K+ E + GE +P +F +L+QE+ + + Sbjct: 1096 VMYVCNTCGNIAWFNRRKKVLECPIHGEEGDIRPVKVPYAFKLLLQEITSMMI 1148 Score = 99.4 bits (246), Expect = 5e-22 Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 33/237 (13%) Query: 314 PTKEDAIIAVYSAIMPGDP--ITIENAEKDLQAMFFSERRYDLGDVGRYKLNKKFDYDPP 371 PTKEDA+ + + I PG P + I AE+ L LG+ ++ K + Sbjct: 295 PTKEDALKYLGNRIAPGQPLDVRIRRAEEFLDTQLLPH----LGNRPEDRIKKAY----- 345 Query: 372 LSTTVLTLDDIVNTMRHLIKVYIGEEPVDDIDHLGNRRVRSVGEL--------LTAELKT 423 L ++ N ++++Y+G+ DD D LGN+R+R G+L L A T Sbjct: 346 ------FLAEMAN---RVLQLYLGKRGEDDKDFLGNKRLRLAGDLIAELFRESLEALANT 396 Query: 424 AFSRMERIAKERMSLKESDTIKPQDLIS-IKPIVAAIKEFFGSSQLSQFMDQVNPLSELT 482 ++E ER ++ ++P + +K +A + +SQ +D+ N +S L+ Sbjct: 397 MAQKLEEQLAERRQIRLDFLVRPTIISDRLKGAIATGNWGQDRTGISQQLDRTNWISLLS 456 Query: 483 HKRRLNALGPGGLSRERAGFEVRDVHYTHYGRMCPIETPEGPNIGLILSLALYARVN 539 H RR+ + P LSR +A FE RD+H +H+GR CP ETPEG N GL+ +LAL A ++ Sbjct: 457 HLRRV--ISP--LSRGQAHFEARDLHGSHWGRYCPFETPEGINCGLVKNLALSAYIS 509 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,200,446 Number of Sequences: 1700 Number of extensions: 56842 Number of successful extensions: 162 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 151 Number of HSP's gapped (non-prelim): 4 length of query: 1164 length of database: 492,079 effective HSP length: 87 effective length of query: 1077 effective length of database: 344,179 effective search space: 370680783 effective search space used: 370680783 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718201|ref|YP_003873733.1| DNA-directed RNA polymerase subunit beta' [Spirochaeta thermophila DSM 6192] (1402 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431618|ref|NP_148215.2| DNA-directed RNA polymerase subuni... 239 4e-64 gi|118431617|ref|NP_148214.2| DNA-directed RNA polymerase subuni... 53 4e-08 >gi|118431618|ref|NP_148215.2| DNA-directed RNA polymerase subunit A' [Aeropyrum pernix K1] Length = 891 Score = 239 bits (609), Expect = 4e-64 Identities = 207/712 (29%), Positives = 325/712 (45%), Gaps = 128/712 (17%) Query: 197 EKGPKADKRLLKRLELVEQFRDSGN------------RPEWMILDVIPVIPPELRPMVQL 244 EK P+ D +L E+ E+ +G+ RPEWM+ V+ V P +RP + L Sbjct: 174 EKKPEGDVKLTPS-EIRERLEKTGSEIEILGVHPERSRPEWMVATVLIVPPLAVRPSITL 232 Query: 245 DGGRFATSDLNDLYRRVINRNNRLKRLMALNAPDIIIRNEKRMLQEAVDALFDNS-KKRR 303 + G + DL ++ +N +L+ ++ NAP+ +I +LQE V A DN R Sbjct: 233 ETGLRSEDDLTHALAEIVRQNEKLRNVIVTNAPETLIEENWMVLQEMVAAYIDNELPGAR 292 Query: 304 AVKGASNRPLKSLSDILRGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMHQCGLPVKMAL 363 + R LK+L+ L+GK GR R NL GKRV+YS R+VI P + +++ G+P ++A Sbjct: 293 RLTHRRKRYLKTLAQRLKGKDGRIRGNLSGKRVNYSARTVISPDPYISINEVGVPEEIAK 352 Query: 364 ELFKPFIMRKLVEREVVYNIKRAKTLVEQEADEVWAVL---------------------- 401 L + R YN++ A+ V D+ L Sbjct: 353 TL-------TIAMRVTPYNLEEARRYVLNGPDKWPGALFVYKASERKKYDLRFFKDYEKL 405 Query: 402 ------DEVIQEH-----PVLLNRAPTLHRLGIQAFEPVLVEGKAIKLHPLVCHAYNADF 450 +V++ H VL NR P+LHR+ I ++ GK +L+ LVC YNADF Sbjct: 406 AESLEPGDVVERHLINGDIVLFNRQPSLHRMSIMGHIVRVMPGKTFRLNLLVCPPYNADF 465 Query: 451 DGDQMAVHVPLTQAAQTECWTLMLSSRNLLNPANGKPIVFPSQDMVLGIYYLTQVKKGAK 510 DGD+M +HVP + AQ E +ML +++L P G PI+ QD V G Y LT Sbjct: 466 DGDEMNLHVPRLEEAQAEAREIMLVEKHILTPRYGGPIIGGRQDYVSGAYLLTV------ 519 Query: 511 GEGRYFASEDE---LVYAAECGAVDYHALVK---------VRVSKAPHNGAF---VETSA 555 + R F E+ L A G + A++K + P + +F +T+A Sbjct: 520 -KTRLFTKEEVERLLSVAGYKGDLPEPAILKPEPLWTGKQLASIFLPEDLSFKGKSKTNA 578 Query: 556 GRVIFNQALPPELEFV-------------NQVFTDKELRQFVGRVYQEKGRGVAVRLLDA 602 G + + L ++ + +E + + E G A +LLD+ Sbjct: 579 GDLACSDELCLHDSYIVITNGKLLEGVLDKKAIGAEEPNNLLHIIALEYGNSKARQLLDS 638 Query: 603 MKEIGFKYATLSGTTFSLADVVVPEDKKAMIEEA----NQKVAAIQEQY-------LSGH 651 + + L G T SL D+ +P+ K IEE +V +I E+Y + G Sbjct: 639 FYRMFIRMLELRGLTISLHDIDLPDRAKQEIEELIREYKGRVYSIIEEYRKGTLEPIPGR 698 Query: 652 ITNEERYNRVIEVWSKTNEDLTNVMMKVLREDRDGFNPLYMMAHSGARGSRSQIRQLAAM 711 E +++EV ++L + +V + D FN +++MA +GARGS I Q+AAM Sbjct: 699 SLEESLEIKIMEVL----DELRKRVQEVASNNLDPFNDVFVMARTGARGSDVNISQMAAM 754 Query: 712 RGLMAKPSGEI----------------IELP----IRANFKEGLSVIEYFISTNGARKGL 751 G A I IE +R++F++GL E F R+GL Sbjct: 755 LGQQAVRGRRIRRGLRNRVLAHFKENDIEPEAWGFVRSSFRKGLRPTEVFFHAAAGREGL 814 Query: 752 ADTALKTADAGYLTRRLVDIAQDVVVNEEDCGTINGI--EMRALKDGEEIVE 801 DTA+KT+ +GY+ RRL++ QD+VV + GT+ + + LK GE+ V+ Sbjct: 815 VDTAVKTSQSGYMQRRLINALQDIVVTYD--GTVRDLYGNLIQLKYGEDGVD 864 >gi|118431617|ref|NP_148214.2| DNA-directed RNA polymerase subunit A'' [Aeropyrum pernix K1] Length = 407 Score = 53.1 bits (126), Expect = 4e-08 Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 5/55 (9%) Query: 876 LVEIGEAVGIVAAQSIGQPGTQLTMRTFHIGGTATRVVEENRVYLKYPVLVESLE 930 L + GEAVG VAAQSIG+PGTQ+T+RTFH G + E V L P L+E ++ Sbjct: 56 LAQPGEAVGTVAAQSIGEPGTQMTLRTFHYAG-----IMEFDVTLGLPRLIEIVD 105 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,350,827 Number of Sequences: 1700 Number of extensions: 61562 Number of successful extensions: 183 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 173 Number of HSP's gapped (non-prelim): 6 length of query: 1402 length of database: 492,079 effective HSP length: 89 effective length of query: 1313 effective length of database: 340,779 effective search space: 447442827 effective search space used: 447442827 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 98 (42.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718202|ref|YP_003873734.1| 30S ribosomal protein S12 [Spirochaeta thermophila DSM 6192] (124 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601670|ref|NP_148211.1| 30S ribosomal protein S12 [Aeropyru... 55 4e-10 >gi|14601670|ref|NP_148211.1| 30S ribosomal protein S12 [Aeropyrum pernix K1] Length = 147 Score = 55.5 bits (132), Expect = 4e-10 Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 9/90 (10%) Query: 18 KSKSPALQSCPQKRGVCTRVMTVTPKKPNSALRKVARVRL-SNGIEVTAYIPGIGHNL-- 74 K K L+ P RG+ + V ++PNSALRK RV+L N VTA++P G L Sbjct: 38 KRKYDPLEGAPMARGIVLEKVGVEARQPNSALRKCVRVQLVKNKKVVTAFVPRDGGILYV 97 Query: 75 QEHSVVLV------RGGRVKDLPGVRYHII 98 EH V++ RG + D+PGVRY ++ Sbjct: 98 DEHDEVIIEGIGGPRGRSMGDIPGVRYRVV 127 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 120,507 Number of Sequences: 1700 Number of extensions: 5020 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 1 length of query: 124 length of database: 492,079 effective HSP length: 67 effective length of query: 57 effective length of database: 378,179 effective search space: 21556203 effective search space used: 21556203 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718203|ref|YP_003873735.1| 30S ribosomal protein S7 [Spirochaeta thermophila DSM 6192] (156 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431614|ref|NP_148208.2| 30S ribosomal protein S7 [Aeropyru... 63 4e-12 >gi|118431614|ref|NP_148208.2| 30S ribosomal protein S7 [Aeropyrum pernix K1] Length = 205 Score = 62.8 bits (151), Expect = 4e-12 Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 9/136 (6%) Query: 23 VMKFINRLMWDG----KKSIAMSVVYKAIGILEERTGKPGLEVFLRAVDNVKPVVEVRSR 78 V + +N+LM G KK +A ++V A I+ TG+ ++V ++A++N P + Sbjct: 70 VERLMNKLMRPGRNGGKKHLAYNIVKTAFDIIYFETGENPIQVLVKAIENSAPREDTTKI 129 Query: 79 RVGGATYQVPVEVRETRREALAMRWIIDAARG---REGKPMEYRLADELLDAY--NSTGV 133 GG TY+V V+V RR A+++I D AR KP+E LA+EL+ A + Sbjct: 130 TYGGITYRVSVDVAPQRRVDQALKFIADGARQCAFNNPKPIEECLAEELILAARGDPRSY 189 Query: 134 AFKKREDTHRMAEANK 149 A +++E+ R+A +++ Sbjct: 190 AIRQKEEIERIALSSR 205 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 161,623 Number of Sequences: 1700 Number of extensions: 7040 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 1 length of query: 156 length of database: 492,079 effective HSP length: 70 effective length of query: 86 effective length of database: 373,079 effective search space: 32084794 effective search space used: 32084794 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718204|ref|YP_003873736.1| elongation factor Tu-B [Spirochaeta thermophila DSM 6192] (396 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601666|ref|NP_148207.1| elongation factor 1-alpha [Aeropyru... 201 2e-53 gi|118431851|ref|NP_148568.2| translation initiation factor IF-2... 125 2e-30 gi|14601403|ref|NP_147939.1| elongation factor EF-2 [Aeropyrum p... 87 7e-19 gi|14602026|ref|NP_148571.1| translation initiation factor IF-2 ... 65 4e-12 >gi|14601666|ref|NP_148207.1| elongation factor 1-alpha [Aeropyrum pernix K1] Length = 437 Score = 201 bits (512), Expect = 2e-53 Identities = 142/434 (32%), Positives = 227/434 (52%), Gaps = 59/434 (13%) Query: 10 KPHINVGTIGHVDHGKTTLTAAIS---GFC-----------ARNYGTKAFSYDDI-DNAP 54 KPH+N+ IGHVDHGK+TL + G+ A++ G ++F + I D Sbjct: 4 KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMK 63 Query: 55 EEKARGITINARHIEYQTDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAADDG--- 111 EE+ RGITI+ ++++T K + +D PGH D++KNMITGA+Q D AILVV+A G Sbjct: 64 EERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFE 123 Query: 112 ----VMAQTREHVLLARQVGVPAIVVFLNKIDLVD---DPELIELVEMDIRELLNKYEFP 164 QTREH+LLAR +G+ I+V +NK+D D D + E V +++ + + Sbjct: 124 AGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQ 183 Query: 165 GDDTPIIKGSAYKAMTNPDDAEATACIK--ELLETMDEYIPLPQRAVDKPFLMSIEDVFS 222 D P I SA+K + + L+E +D+ P P + VDKP + +++V+S Sbjct: 184 VDKIPFIPVSAWKGDNLIERSPNMPWYNGPTLVEALDQLQP-PAKPVDKPLRIPVQNVYS 242 Query: 223 IQGRGTVVTGRIDQGVIRPGDEVEIVGFGETKKTVVTSVEMFNKILDEGQAGDNVGCLLR 282 I G GTV GR++ GV+R GD+V + G + V S+EM + L + + GDN+G +R Sbjct: 243 IPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGE--VRSIEMHYQQLQQAEPGDNIGFAVR 300 Query: 283 GIDKDEVERGQV---LAKPGSITPHKKFKAAIYCLTKEEGGRHTPFFSGYRPQFYFRTTD 339 G+ K +++RG V L KP ++ ++F+A I+ + + GY P + T Sbjct: 301 GVSKSDIKRGDVAGHLDKPPTVA--EEFEARIFVI-----WHPSAITVGYTPVIHVHTAS 353 Query: 340 VTGSV-------------YLPDDKQMVMPGDNAEITVELITPVAMDKGL------RFAIR 380 V+ + + + Q + GD A + + + P+ ++K RFA+R Sbjct: 354 VSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMR 413 Query: 381 EGGRTVASGQVIEV 394 + RTV G V +V Sbjct: 414 DMNRTVGIGIVTDV 427 >gi|118431851|ref|NP_148568.2| translation initiation factor IF-2 [Aeropyrum pernix K1] Length = 414 Score = 125 bits (313), Expect = 2e-30 Identities = 103/346 (29%), Positives = 160/346 (46%), Gaps = 78/346 (22%) Query: 7 ERTKPHINVGTIGHVDHGKTTLTAAISGFCARNYGTKAFSYDDIDNAPEEKARGITINAR 66 ++ +P +N+G +GHVDHGKTTL A++G + EE RG+TI Sbjct: 5 DKRQPEVNIGVVGHVDHGKTTLVQALTGVWTMRHS-------------EEIRRGMTIKLG 51 Query: 67 HIEYQ---------------------------TDKRHYAHVDCPGHADYIKNMITGAAQM 99 + + + + +R ++VD PGH + M++GAA M Sbjct: 52 YADGEVWECEGCGFPERFSPEPVCECDPQASASLRRRVSYVDAPGHEILMATMLSGAALM 111 Query: 100 DGAILVVAADDGV-MAQTREHVLLARQVGVPAIVVFLNKIDLVDDPELIELVEMDIRELL 158 DGA+LVVAA++ QT+EH++ +G+ IV+ NK+D+V E + +E+L Sbjct: 112 DGALLVVAANEPCPQPQTKEHLVALEIIGIKNIVIVQNKVDVVSR----ERAKESYQEIL 167 Query: 159 NKYEFP-GDDTPIIKGSAYKAMTNPDDAEATACIKELLETMDEYIPLPQRAVDKPFLMSI 217 N + + +PII SA K A I +L ++++IP P R +DKP +M I Sbjct: 168 NFIKGTIAEGSPIIPVSALK----------RANIDAVLAAIEKFIPTPPRDLDKPPVMYI 217 Query: 218 EDVFSIQGRGT--------VVTGRIDQGVIRPGDEVEIVGFGETKK-----------TVV 258 F + GT VV G I QGV R GDE+EI +K T + Sbjct: 218 SRSFDVNRPGTPPERLVGGVVGGSIIQGVFRVGDEIEISPGVAVRKPGGRVEYVRLHTTI 277 Query: 259 TSVEMFNKILDEGQAGDNVGC---LLRGIDKDEVERGQVLAKPGSI 301 TS+ + ++E + G V L + K + G V+ KPG + Sbjct: 278 TSLRFGSIEVEEARPGGLVAIGTQLDPSVTKADNLVGNVVGKPGEL 323 >gi|14601403|ref|NP_147939.1| elongation factor EF-2 [Aeropyrum pernix K1] Length = 736 Score = 87.0 bits (214), Expect = 7e-19 Identities = 100/375 (26%), Positives = 162/375 (43%), Gaps = 88/375 (23%) Query: 4 EKFERTKPHI-NVGTIGHVDHGKTTLT---AAISGFCARNYGTKAFSYDDIDNAPEEKAR 59 EK R I N+G I HVDHGKTT + A +G + +A D ++ EK R Sbjct: 12 EKIMRNIDQIRNIGIIAHVDHGKTTTSDSLLAAAGIISERIAGEALVLDYLN---VEKQR 68 Query: 60 GITINARHI----EYQTDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAADDGVMAQ 115 GIT+ + ++ EY+ +D PGH D+ + +DGAI+VV A +GVM Q Sbjct: 69 GITVKSANVSLYHEYEGKPYVINLIDTPGHVDFSGKVTRSLRVLDGAIVVVDAVEGVMTQ 128 Query: 116 TREHVLLARQVGVPAIVVFLNKID-----LVDDPELIE--LVEM--DIRELLNKYEFP-- 164 T + A + V I +F+NK+D L PE I+ VE+ ++ L++ Y P Sbjct: 129 TETVIRQALEERVRPI-LFINKVDRLIKELKLPPEKIQQRFVEIIKEVNNLIDLYAEPEF 187 Query: 165 ----------------------GDDTPII--KGSAYKAMTNPDD--AEATACIKE----- 193 G P + KG ++ + + EA A + + Sbjct: 188 RKKWKLDPNAGMVAFGSAKDKWGISVPQVKKKGITFREIIQAYEKGKEAVAELSKKMPLH 247 Query: 194 --LLETMDEYIPLPQRA-------------------------VDKPFLMSIEDVFSIQGR 226 LL+ + +++P P+ A D P + I DV I+ Sbjct: 248 ETLLDMVIKFVPNPREAQRYRIPKIWKGDINSEIGQAMLNADPDGPLVFFINDV-RIEKA 306 Query: 227 GTVVTGRIDQGVIRPGDEVEIVGFGETKKTVVTSVEM--FNKILDEGQAGDNVGCLLRGI 284 G V TGR+ G +R G+EV ++ G+ + + S+ M F ++ E AG N+G ++ Sbjct: 307 GLVATGRVFSGTLRSGEEVYLLNAGKKSRLLQVSIYMGPFREVTKEIPAG-NIGAVM--- 362 Query: 285 DKDEVERGQVLAKPG 299 ++V G+ + G Sbjct: 363 GFEDVRAGETVVSLG 377 >gi|14602026|ref|NP_148571.1| translation initiation factor IF-2 [Aeropyrum pernix K1] Length = 617 Score = 64.7 bits (156), Expect = 4e-12 Identities = 77/280 (27%), Positives = 114/280 (40%), Gaps = 44/280 (15%) Query: 15 VGTIGHVDHGKTTLTAAI---------SGFCARNYGTKAFSYDDIDNAPEEKARGITINA 65 V +GHVDHGKTTL I +G ++ G D I+ E + I + Sbjct: 19 VVVLGHVDHGKTTLLDKIRRTAVAAKEAGGITQHIGASIVPADVIEKIAEPLKKVIPV-- 76 Query: 66 RHIEYQTDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAADDGVMAQTREHVLLARQ 125 + +D PGH + G + D AILVV +G QT E + L ++ Sbjct: 77 -----KLVIPGLLFIDTPGHELFSNLRRRGGSVADFAILVVDIMEGFKPQTYEALELLKE 131 Query: 126 VGVPAIVVFLNKIDLV-----------------DDPELIELVEMDIRELLNK-YE--FPG 165 VP ++ NKID + DP++ E++E + E++ K YE P Sbjct: 132 RRVPFLIA-ANKIDRIPGWKPNPDAPFIETIRRQDPKVREILEQRVYEIVGKMYEAGLPA 190 Query: 166 DDTPIIKGSAYKAMTNPDDAEATACIKELLETM----DEYIPLPQRAVDKPFLMSIEDVF 221 + IK K P A I ELL + Y+ R + P + +V Sbjct: 191 ELFTRIKDFRRKIAIVPVSARTGEGIPELLAVLAGLTQTYLKERLRYAEGPAKGVVLEVK 250 Query: 222 SIQGRGTVVTGRIDQGVIRPGDEVEIVGFGETKKTVVTSV 261 +QG GTVV I GV++ D I+ G + +VT V Sbjct: 251 EMQGFGTVVDAVIYDGVLKKED---IIVVGGREGPIVTRV 287 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 402,514 Number of Sequences: 1700 Number of extensions: 17896 Number of successful extensions: 88 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 6 length of query: 396 length of database: 492,079 effective HSP length: 79 effective length of query: 317 effective length of database: 357,779 effective search space: 113415943 effective search space used: 113415943 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718205|ref|YP_003873737.1| 30S ribosomal protein S10 [Spirochaeta thermophila DSM 6192] (102 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601665|ref|NP_148206.1| 30S ribosomal protein S10 [Aeropyru... 60 9e-12 >gi|14601665|ref|NP_148206.1| 30S ribosomal protein S10 [Aeropyrum pernix K1] Length = 104 Score = 60.5 bits (145), Expect = 9e-12 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 2/99 (2%) Query: 5 KIRVRLKGFDTELVDQSAQAIVQAAQKAGAKVSGPVPLPTHIRKYTVLRSPH-VNKESRE 63 K+R+ L + ++ + I A K G ++ GPVPLP + V R PH + E Sbjct: 4 KLRIWLWSTNVRSLENVVEQIRNIANKTGIRMRGPVPLPVKRLEVPVFRLPHGEGSKYWE 63 Query: 64 QFEMRIHKRLVDILNPTPAVMDALMKLELPAGVDVEIKQ 102 +EM++HKRL+D L V+ LM++++P V +EIKQ Sbjct: 64 HWEMKVHKRLID-LEADERVLRHLMRIKVPEDVYIEIKQ 101 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.133 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,886 Number of Sequences: 1700 Number of extensions: 3533 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 1 length of query: 102 length of database: 492,079 effective HSP length: 64 effective length of query: 38 effective length of database: 383,279 effective search space: 14564602 effective search space used: 14564602 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718206|ref|YP_003873738.1| 50S ribosomal protein L3 [Spirochaeta thermophila DSM 6192] (208 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600545|ref|NP_147062.1| 50S ribosomal protein L3 [Aeropyrum... 44 4e-06 >gi|14600545|ref|NP_147062.1| 50S ribosomal protein L3 [Aeropyrum pernix K1] Length = 344 Score = 43.5 bits (101), Expect = 4e-06 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Query: 98 EIFEGVRFVDVRGLSKGKGYQGVMKRHGFSGGPASHGSKFHRAHGSTGQSAYPSKVLKGT 157 ++FE + VDV ++KGKG+QGV+KR G P H K + G ++ T Sbjct: 195 DVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWH--KHRKGSRRIGARSHGRSTFWET 252 Query: 158 KMAGRMGGVQVCVQNLRIVEVDKE 181 AG+ G + N RI+ +D + Sbjct: 253 PQAGQTGFHRRTEYNKRILMIDDD 276 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.141 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 246,664 Number of Sequences: 1700 Number of extensions: 11886 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 1 length of query: 208 length of database: 492,079 effective HSP length: 73 effective length of query: 135 effective length of database: 367,979 effective search space: 49677165 effective search space used: 49677165 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718207|ref|YP_003873739.1| hypothetical protein STHERM_c04970 [Spirochaeta thermophila DSM 6192] (208 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 206,726 Number of Sequences: 1700 Number of extensions: 9215 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 208 length of database: 492,079 effective HSP length: 73 effective length of query: 135 effective length of database: 367,979 effective search space: 49677165 effective search space used: 49677165 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718208|ref|YP_003873740.1| 50S ribosomal protein L23 [Spirochaeta thermophila DSM 6192] (95 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430944|ref|NP_147064.2| 50S ribosomal protein L23 [Aeropyr... 42 3e-06 >gi|118430944|ref|NP_147064.2| 50S ribosomal protein L23 [Aeropyrum pernix K1] Length = 86 Score = 42.0 bits (97), Expect = 3e-06 Identities = 21/50 (42%), Positives = 30/50 (60%) Query: 1 MDPHEVIIAPVLTEKANILREKENKYVFRVDARANKLEIKQAIRELFSVE 50 M P EVII +TEK + E+EN F V A K ++K+A+ +LF V+ Sbjct: 1 MKPEEVIIRVYVTEKTTRMLEEENTLTFIVRREATKNDVKRAVEQLFGVK 50 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,442 Number of Sequences: 1700 Number of extensions: 3367 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 1 length of query: 95 length of database: 492,079 effective HSP length: 63 effective length of query: 32 effective length of database: 384,979 effective search space: 12319328 effective search space used: 12319328 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718209|ref|YP_003873741.1| 50S ribosomal protein L2 [Spirochaeta thermophila DSM 6192] (274 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600538|ref|NP_147055.1| 50S ribosomal protein L2 [Aeropyrum... 100 7e-23 >gi|14600538|ref|NP_147055.1| 50S ribosomal protein L2 [Aeropyrum pernix K1] Length = 238 Score = 99.8 bits (247), Expect = 7e-23 Identities = 61/161 (37%), Positives = 88/161 (54%), Gaps = 5/161 (3%) Query: 76 GVVKTIEYDPNRSAVICLVAYADGEKRYILAPKGIERGAVVQSGEDAPIAVGNALPLERI 135 G V + +DP R + V DG + + A +G+ G +++ G A GN LPL +I Sbjct: 40 GKVVELIHDPGRYVPLARVVREDGVEFLMPAAEGMYVGQIIEIGPAAKPEAGNILPLGKI 99 Query: 136 PLGTAVHNVELYPGKGGQMVRSAGTGAVVMAKEGDYVTLKLPSGEMRMVFKKCYATVGEV 195 P GT V NVEL PG GG++ R AG+ A+V+ + G L+LPSG+ + V AT+G Sbjct: 100 PEGTEVFNVELRPGDGGKLARQAGSYALVVGRAGAKTILRLPSGKDKEVPNDSRATIGIP 159 Query: 196 GNEDHMNVVLGKAGRS--RW---LGRRPKVRGTAMNPVDHP 231 + + KAG + +W + P+VRG AMN VDHP Sbjct: 160 AGAGRIEKPIMKAGFAYHKWKVKARKWPRVRGVAMNAVDHP 200 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 280,154 Number of Sequences: 1700 Number of extensions: 12489 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 1 length of query: 274 length of database: 492,079 effective HSP length: 76 effective length of query: 198 effective length of database: 362,879 effective search space: 71850042 effective search space used: 71850042 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718210|ref|YP_003873742.1| 30S ribosomal protein S19 [Spirochaeta thermophila DSM 6192] (92 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431015|ref|NP_147183.2| 30S ribosomal protein S19 [Aeropyr... 66 2e-13 >gi|118431015|ref|NP_147183.2| 30S ribosomal protein S19 [Aeropyrum pernix K1] Length = 144 Score = 65.9 bits (159), Expect = 2e-13 Identities = 31/63 (49%), Positives = 43/63 (68%) Query: 30 MIKTFSRASTIIPEMVGLTISVYNGKTWVPVYITEDLVGHKLGEFAPTRIFRGHAGSDKK 89 +I+T R I+PEMVGLTI+VYNGK ++PV I +++GH LGEF+PT H K Sbjct: 74 VIRTHVRDMVILPEMVGLTIAVYNGKEFIPVKIVPEMIGHYLGEFSPTTRIVQHGEPGLK 133 Query: 90 ASK 92 A++ Sbjct: 134 ATR 136 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,087 Number of Sequences: 1700 Number of extensions: 3510 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 1 length of query: 92 length of database: 492,079 effective HSP length: 61 effective length of query: 31 effective length of database: 388,379 effective search space: 12039749 effective search space used: 12039749 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718211|ref|YP_003873743.1| 50S ribosomal protein L22 [Spirochaeta thermophila DSM 6192] (119 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 115,038 Number of Sequences: 1700 Number of extensions: 4147 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 119 length of database: 492,079 effective HSP length: 66 effective length of query: 53 effective length of database: 379,879 effective search space: 20133587 effective search space used: 20133587 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718212|ref|YP_003873744.1| 30S ribosomal protein S3 [Spirochaeta thermophila DSM 6192] (234 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600662|ref|NP_147181.1| 30S ribosomal protein S3 [Aeropyrum... 68 2e-13 >gi|14600662|ref|NP_147181.1| 30S ribosomal protein S3 [Aeropyrum pernix K1] Length = 246 Score = 67.8 bits (164), Expect = 2e-13 Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 4/151 (2%) Query: 57 VEIIRHPQRVMLVVHTPRPGVLIGAKGATIERIGAELQKMVS-KKLQIKIKEIKRPEAHA 115 V++++ + + RP ++IG +GATI R+ Q + +I++++ + P A Sbjct: 35 VKVVQTSLGTNITIWAERPALIIGRRGATIRRLQEVFQTVFGLPNPRIRVEQPENPMLDA 94 Query: 116 QVVAQNIAAQLEHRASFRRVMKLAVANAMKAGVQGIKVRVSGRLGGAEIARSEVQMAGRV 175 +V A IA +E FRRV A+ M G G+++ +SG+L +E AR E AG+V Sbjct: 95 RVQAFRIARSIERGIHFRRVAFAAINRIMSNGALGVEITISGKL-TSERARFEKFKAGKV 153 Query: 176 PLHTLRAD--IDYGFAEARTTYGVIGVKVWI 204 + D +D A AR GVIGV V I Sbjct: 154 YKSGHKVDELVDRASAYARLPKGVIGVDVII 184 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 213,393 Number of Sequences: 1700 Number of extensions: 8083 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 1 length of query: 234 length of database: 492,079 effective HSP length: 74 effective length of query: 160 effective length of database: 366,279 effective search space: 58604640 effective search space used: 58604640 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718213|ref|YP_003873745.1| 50S ribosomal protein L16 [Spirochaeta thermophila DSM 6192] (140 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 158,159 Number of Sequences: 1700 Number of extensions: 7117 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 140 length of database: 492,079 effective HSP length: 68 effective length of query: 72 effective length of database: 376,479 effective search space: 27106488 effective search space used: 27106488 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718214|ref|YP_003873746.1| 50S ribosomal protein L29 [Spirochaeta thermophila DSM 6192] (62 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431014|ref|YP_874817.1| 50S ribosomal protein L29 [Aeropyr... 39 3e-05 >gi|118431014|ref|YP_874817.1| 50S ribosomal protein L29 [Aeropyrum pernix K1] Length = 71 Score = 38.5 bits (88), Expect = 3e-05 Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 6 KDLSYRELLAKREELVKRYQELRFQKVVGHLDNPLEVRTLRRNIARLNFLIHNHRE 61 + +S EL EL + LR++ VG L+NP E+R RRN+AR+ ++ RE Sbjct: 12 RGMSVEELEKTLRELRIKLMGLRYKAKVGLLENPGELREARRNVARILTVLREKRE 67 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.140 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,773 Number of Sequences: 1700 Number of extensions: 1448 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 1 length of query: 62 length of database: 492,079 effective HSP length: 34 effective length of query: 28 effective length of database: 434,279 effective search space: 12159812 effective search space used: 12159812 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718215|ref|YP_003873747.1| 30S ribosomal protein S17 [Spirochaeta thermophila DSM 6192] (99 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.133 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,356 Number of Sequences: 1700 Number of extensions: 2441 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 99 length of database: 492,079 effective HSP length: 64 effective length of query: 35 effective length of database: 383,279 effective search space: 13414765 effective search space used: 13414765 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718216|ref|YP_003873748.1| 50S ribosomal protein L14 [Spirochaeta thermophila DSM 6192] (123 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600659|ref|NP_147177.1| 50S ribosomal protein L14 [Aeropyru... 90 2e-20 >gi|14600659|ref|NP_147177.1| 50S ribosomal protein L14 [Aeropyrum pernix K1] Length = 140 Score = 90.1 bits (222), Expect = 2e-20 Identities = 54/111 (48%), Positives = 69/111 (62%), Gaps = 7/111 (6%) Query: 2 IQVQTYLNVADNSGAKKVQCIKV----LGGTRKKYATLGDLIVVSVKEALPDAPVKKGTV 57 +QV +Y+ VADNSGAK+V I V R A +GDL+VVSVK+ P + V Sbjct: 20 LQVGSYVPVADNSGAKEVMIISVPQVKTRLRRLPSAGVGDLVVVSVKKGTPQM---RRQV 76 Query: 58 QRAVVVRTKKEVRRPDGTYIRFDDNACVIVDNHNNPRGRRVFGPVARELRE 108 AVVVR ++ RRPDGT++ F+DNA VIV+ PRG V GP+ARE E Sbjct: 77 VYAVVVRQRRPFRRPDGTWVSFEDNAVVIVNPDGTPRGSEVRGPIAREAAE 127 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 112,812 Number of Sequences: 1700 Number of extensions: 4381 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 1 length of query: 123 length of database: 492,079 effective HSP length: 67 effective length of query: 56 effective length of database: 378,179 effective search space: 21178024 effective search space used: 21178024 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718217|ref|YP_003873749.1| 50S ribosomal protein L24 [Spirochaeta thermophila DSM 6192] (111 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,517 Number of Sequences: 1700 Number of extensions: 3165 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 111 length of database: 492,079 effective HSP length: 65 effective length of query: 46 effective length of database: 381,579 effective search space: 17552634 effective search space used: 17552634 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718218|ref|YP_003873750.1| 50S ribosomal protein L5 [Spirochaeta thermophila DSM 6192] (186 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431011|ref|NP_147174.2| 50S ribosomal protein L5 [Aeropyru... 86 8e-19 >gi|118431011|ref|NP_147174.2| 50S ribosomal protein L5 [Aeropyrum pernix K1] Length = 192 Score = 85.5 bits (210), Expect = 8e-19 Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 11/147 (7%) Query: 15 ERVKQELMEEMGYRNVMQVPRLEKIVLSMGVGEAIQNKRLLDLAVEELTLIAGQRAIKRK 74 ERV E+++E R+ M+ PR+ K+ +++ +G Q+ L A E L + GQ+ + RK Sbjct: 13 ERVS-EILDEWK-RSPMRRPRIVKVTVNISIG---QSGERLQRAAEVLEELTGQKPVFRK 67 Query: 75 ARKSIAGFKVRKGMEVGAMVTLRGLRMYEFLYRLIHVAIPRIKDFRGLNPNSFDGHGNYS 134 A+++I F VRKG + MVTLRG + FL R + RIK +S D HGN S Sbjct: 68 AKRTIRAFGVRKGENIAVMVTLRGEKALNFLKRALDAVGHRIK------TSSIDEHGNVS 121 Query: 135 LGITEQIIFPEIDYDSVERVTGFNVTI 161 GI E I+ P + YD + G +V I Sbjct: 122 FGIEEHILIPGVKYDPRVGILGMDVAI 148 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 179,981 Number of Sequences: 1700 Number of extensions: 7811 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 1 length of query: 186 length of database: 492,079 effective HSP length: 72 effective length of query: 114 effective length of database: 369,679 effective search space: 42143406 effective search space used: 42143406 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718219|ref|YP_003873751.1| 30S ribosomal protein S14 [Spirochaeta thermophila DSM 6192] (61 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.140 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,061 Number of Sequences: 1700 Number of extensions: 1628 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 61 length of database: 492,079 effective HSP length: 33 effective length of query: 28 effective length of database: 435,979 effective search space: 12207412 effective search space used: 12207412 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718220|ref|YP_003873752.1| 30S ribosomal protein S8 [Spirochaeta thermophila DSM 6192] (132 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431009|ref|NP_147172.2| 30S ribosomal protein S8 [Aeropyru... 39 5e-05 >gi|118431009|ref|NP_147172.2| 30S ribosomal protein S8 [Aeropyrum pernix K1] Length = 133 Score = 38.9 bits (89), Expect = 5e-05 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 13/139 (9%) Query: 1 MSVSDPIADMLTKIRNASLARHEKVDIVPSXXXXXXXXXXXN-EGYIKNFKKVVVSEKPF 59 M + D +A+ + I+NA + + I+PS EGYI F+ + Sbjct: 1 MVMLDTLANAMAAIKNAEMRGKGEAIIMPSSKLIANVLRILEKEGYIGGFEYIDDGRWGK 60 Query: 60 IRIFLKYDEQQRPVIHELSRISKPGRRIYSGYKEMPRIKNGY------GTLIVSTSEGVI 113 R+ L V+ + +S Y +MP Y G LI+ST +GV+ Sbjct: 61 FRVKLLGRINDIGVVKPRTPVS------YRELAKMPEHLRKYLASRDVGLLILSTPQGVM 114 Query: 114 TDKKARERRVGGELICSIW 132 T ++A +R++GG +I ++ Sbjct: 115 THREALKRKIGGIVIAYVY 133 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 118,700 Number of Sequences: 1700 Number of extensions: 4330 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 1 length of query: 132 length of database: 492,079 effective HSP length: 68 effective length of query: 64 effective length of database: 376,479 effective search space: 24094656 effective search space used: 24094656 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718221|ref|YP_003873753.1| 50S ribosomal protein L6 [Spirochaeta thermophila DSM 6192] (181 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600654|ref|NP_147171.1| 50S ribosomal protein L6 [Aeropyrum... 41 2e-05 >gi|14600654|ref|NP_147171.1| 50S ribosomal protein L6 [Aeropyrum pernix K1] Length = 182 Score = 40.8 bits (94), Expect = 2e-05 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 9/133 (6%) Query: 25 RVEVKGPKGVLSMEYRPE--VEVKVEEGVCRVERKNDTKKARSFHGLYRQLIHNMVKGVS 82 RV+V GPKG + ++ V +++E+ VE + R+ G I NM+KGV Sbjct: 25 RVKVSGPKGEVERDFSHARGVLIRLEDNSVVVESFFAKARQRALVGAIAGHIRNMIKGVQ 84 Query: 83 EGFEKVLLI--NGIGYRAEVRGNVVVLS--LG-FSMPIEYLIPEGITVTVEENTRIRVSG 137 GF L I + +V G+ ++S LG + I ++P G+ V V + + + V G Sbjct: 85 GGFRYKLKIMYSHFPINVKVEGDKFIISNFLGEKGLRIARIMP-GVKVQV-KGSDVIVEG 142 Query: 138 IDKALVGKVAAEI 150 ID V + AA I Sbjct: 143 IDVEKVAQTAANI 155 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.138 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 180,443 Number of Sequences: 1700 Number of extensions: 8164 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 1 length of query: 181 length of database: 492,079 effective HSP length: 71 effective length of query: 110 effective length of database: 371,379 effective search space: 40851690 effective search space used: 40851690 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718222|ref|YP_003873754.1| 50S ribosomal protein L18 [Spirochaeta thermophila DSM 6192] (122 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 108,168 Number of Sequences: 1700 Number of extensions: 4242 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 122 length of database: 492,079 effective HSP length: 67 effective length of query: 55 effective length of database: 378,179 effective search space: 20799845 effective search space used: 20799845 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718223|ref|YP_003873755.1| 30S ribosomal protein S5 [Spirochaeta thermophila DSM 6192] (162 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600650|ref|NP_147167.1| 30S ribosomal protein S5 [Aeropyrum... 57 2e-10 >gi|14600650|ref|NP_147167.1| 30S ribosomal protein S5 [Aeropyrum pernix K1] Length = 218 Score = 57.0 bits (136), Expect = 2e-10 Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 11/143 (7%) Query: 11 LVSLNRVSKVVKGGRRFSFTALXXXXXXXXXXXXXXXXANDVTEAIRKSIQKAKQSMVTV 70 ++ ++ V K+ GR F A+ A AI K+I+ AK +++ V Sbjct: 59 VIDVSIVQKMTDAGRITRFRAVVVVGNKDGYVGLGKGKARQFRFAIEKAIRNAKLNIIPV 118 Query: 71 PMQHGT----------LPHEIQVKFKSTRVLLKPAAPGTGVIAGGPVRAVLEAAGYSDVL 120 G+ +P ++ K S V+LKPA GTG++AG + VL AG SDV Sbjct: 119 RRGCGSWECTCGEAHSVPFTVRGKSGSVEVILKPAPKGTGLVAGDVAKVVLRLAGISDVW 178 Query: 121 TKVMG-SRNSTNVVQAVFRGLQS 142 T G +R S N +A + L++ Sbjct: 179 TFTKGETRTSYNFARATYLALRN 201 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.131 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 127,365 Number of Sequences: 1700 Number of extensions: 4201 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 1 length of query: 162 length of database: 492,079 effective HSP length: 70 effective length of query: 92 effective length of database: 373,079 effective search space: 34323268 effective search space used: 34323268 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718224|ref|YP_003873756.1| 50S ribosomal protein L30 [Spirochaeta thermophila DSM 6192] (65 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.133 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,506 Number of Sequences: 1700 Number of extensions: 1601 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 65 length of database: 492,079 effective HSP length: 37 effective length of query: 28 effective length of database: 429,179 effective search space: 12017012 effective search space used: 12017012 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718225|ref|YP_003873757.1| 50S ribosomal protein L15 [Spirochaeta thermophila DSM 6192] (158 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.133 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 129,512 Number of Sequences: 1700 Number of extensions: 4618 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 158 length of database: 492,079 effective HSP length: 70 effective length of query: 88 effective length of database: 373,079 effective search space: 32830952 effective search space used: 32830952 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718226|ref|YP_003873758.1| hypothetical protein STHERM_c05160 [Spirochaeta thermophila DSM 6192] (440 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431289|ref|NP_147647.2| preprotein translocase subunit Sec... 67 7e-13 >gi|118431289|ref|NP_147647.2| preprotein translocase subunit SecY [Aeropyrum pernix K1] Length = 457 Score = 67.4 bits (163), Expect = 7e-13 Identities = 104/439 (23%), Positives = 181/439 (41%), Gaps = 72/439 (16%) Query: 11 RIPELRRRVLFTLAVLIVFRIGAALPIPGINITALKQYYLQQQTEGLTSITDYIDFFAGG 70 R P L RR+ +T +L+++ I + +P+ GI Q G + I + G Sbjct: 22 RKPTLYRRLAWTGVILVLYFIMSNIPLYGIP---------PQNIGGQVDLQRIIFASSAG 72 Query: 71 AFKNFSIFMLGVMPYITASIIMQLLLVMFPSLKAIAEEEGGRK--KIQRYTRYGTVLVSL 128 ++ LG+ P +TAS+I+Q+L+ +A+ EG RK Q+ + Sbjct: 73 -----TLMELGIGPIVTASLIIQVLVGAKIIKLDLADPEGRRKFTSAQKVLALAFAALEA 127 Query: 129 IQSFIVAQYADAIPDAVVLPKLSFVLLGMLTVTTGSLFLMWLGEQVNQR-GIGNGISLII 187 + + +Y + A+ L + L+ L + G+L +++ E + + GIG+ ISL I Sbjct: 128 VAFTVGGRYW--VGTAIEPGPLDYALVS-LQLFLGALLVIYFDEVMQKGWGIGSAISLFI 184 Query: 188 FAGI--------------VAR---LPQAFIQLVEQIQLGELNPXXXXXXXXXXXXXXXXX 230 AG+ VA+ L A I + L N Sbjct: 185 LAGVAQGVVWSIFGTIPGVAQDYGLVPAIISNPDLTLLARPNGFPDLTGFFTTLAAIILL 244 Query: 231 XYEQQGQRKIPVHYAKRVVGRRVYGVQNTYIPMRLNPSGVIPV----IFASSVLLFPLQI 286 Y Q + +IP+ R G+++ +P++ IP+ I S +LL + Sbjct: 245 VYLQAMRVEIPI------TSERFKGIRSR-VPLQFIYVTNIPILLVGILVSDLLLVQRLL 297 Query: 287 AQMLGTR---VGWLADVAYWLRPG-GVW-----------YLVLYTLLIIFFAYFYTQVT- 330 A LG + + Y+L P GV ++ +T+L I F Y + ++ Sbjct: 298 ADYLGVESRAYQIYSSIVYYLSPPRGVVQSIADPVKTAVFIASWTVLSIVFGYMWVEIAG 357 Query: 331 LNPMELAKNIREHGGSVPGVRAEKLEEYFTNILNRIILPGALFLAFIAIIPTLVQQVFHF 390 LNP E A+ + + G ++PG+R++ +L R I P + I +V +F Sbjct: 358 LNPREQAERLIKGGLAIPGMRSD--PRVLERVLRRYIYPLTFLSSLIVAALVIVADIFG- 414 Query: 391 PSRLAYLMGGTSLLIMVGV 409 AY GT LL+ VG+ Sbjct: 415 ----AY-GTGTGLLLAVGI 428 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.144 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 416,898 Number of Sequences: 1700 Number of extensions: 17614 Number of successful extensions: 67 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 1 length of query: 440 length of database: 492,079 effective HSP length: 80 effective length of query: 360 effective length of database: 356,079 effective search space: 128188440 effective search space used: 128188440 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718227|ref|YP_003873759.1| 50S ribosomal protein L36 [Spirochaeta thermophila DSM 6192] (37 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.131 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,258 Number of Sequences: 1700 Number of extensions: 129 Number of successful extensions: 1 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 37 length of database: 492,079 effective HSP length: 11 effective length of query: 26 effective length of database: 473,379 effective search space: 12307854 effective search space used: 12307854 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718228|ref|YP_003873760.1| 30S ribosomal protein S13 [Spirochaeta thermophila DSM 6192] (121 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431572|ref|NP_148134.2| 30S ribosomal protein S13 [Aeropyr... 62 4e-12 >gi|118431572|ref|NP_148134.2| 30S ribosomal protein S13 [Aeropyrum pernix K1] Length = 150 Score = 62.0 bits (149), Expect = 4e-12 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 23/130 (17%) Query: 1 MARIAGVDLPNK-QIQIALTYIYGIGRASARKICEKTGIPYETKVSELTSDQVQKLRQVI 59 + RIAGVD+ ++ L I GIG +A + G+ E KV LT +++++L +V+ Sbjct: 10 IVRIAGVDIDGDLKLPYGLASIKGIGYTTAMAVIRMLGLDPEKKVGFLTEEEIRRLDEVL 69 Query: 60 ----------------------ENEYTVEGRLRTQVALNIKRLMDIGCYRGLRHRKGLPV 97 ++ + + L +I+R M IG +RG+RH+ GL V Sbjct: 70 RDITQLGLPKWLYNRRKDYETGKDLHLIGSELIFYARRDIEREMKIGSWRGIRHKYGLKV 129 Query: 98 RGQRTRTNAR 107 RGQRTRT R Sbjct: 130 RGQRTRTTGR 139 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,643 Number of Sequences: 1700 Number of extensions: 3440 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 1 length of query: 121 length of database: 492,079 effective HSP length: 67 effective length of query: 54 effective length of database: 378,179 effective search space: 20421666 effective search space used: 20421666 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718229|ref|YP_003873761.1| 30S ribosomal protein S11 [Spirochaeta thermophila DSM 6192] (123 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431574|ref|NP_148136.2| 30S ribosomal protein S11 [Aeropyr... 77 1e-16 >gi|118431574|ref|NP_148136.2| 30S ribosomal protein S11 [Aeropyrum pernix K1] Length = 133 Score = 77.0 bits (188), Expect = 1e-16 Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 12/123 (9%) Query: 13 GKVYIQATFNNTIVTVTDMNG-NCVSWASAGALGFRGAKKSTPYAAQVTAETAVKKAMDH 71 G +I ++FNNT V +TD+ G V+ + G + +K +PYAA + A A +KAM+ Sbjct: 11 GVAHIYSSFNNTHVHITDLTGAETVARVTGGMVVKADREKPSPYAAMIAASRAAQKAMER 70 Query: 72 GLQEAHVYV--------KGPGVGREAAIRAIDALGVRVRSLHDITPIPHNGCR---PRKA 120 G+ H+ V K PG G +AAIRA+ G + + D+TPIPH+ R R+ Sbjct: 71 GIAAIHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPIPHDTTRRPGGRRG 130 Query: 121 RRV 123 RRV Sbjct: 131 RRV 133 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.131 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 116,936 Number of Sequences: 1700 Number of extensions: 4378 Number of successful extensions: 27 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 1 length of query: 123 length of database: 492,079 effective HSP length: 67 effective length of query: 56 effective length of database: 378,179 effective search space: 21178024 effective search space used: 21178024 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718230|ref|YP_003873762.1| 30S ribosomal protein S4 [Spirochaeta thermophila DSM 6192] (211 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431573|ref|NP_148135.2| 30S ribosomal protein S4 [Aeropyru... 53 7e-09 >gi|118431573|ref|NP_148135.2| 30S ribosomal protein S4 [Aeropyrum pernix K1] Length = 171 Score = 52.8 bits (125), Expect = 7e-09 Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Query: 90 GDNLIILLERRLDNIVYRMHFASSRKQARQIVGHGHVLVNGRKVNIPSYLV-REGDRV 146 G N +LERRL IVY+ A + QARQ+V HGH+ + GR+V P YLV RE +++ Sbjct: 95 GINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKL 152 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 204,003 Number of Sequences: 1700 Number of extensions: 8220 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 1 length of query: 211 length of database: 492,079 effective HSP length: 73 effective length of query: 138 effective length of database: 367,979 effective search space: 50781102 effective search space used: 50781102 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718231|ref|YP_003873763.1| hypothetical protein STHERM_c05210 [Spirochaeta thermophila DSM 6192] (363 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 307,681 Number of Sequences: 1700 Number of extensions: 12411 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 363 length of database: 492,079 effective HSP length: 78 effective length of query: 285 effective length of database: 359,479 effective search space: 102451515 effective search space used: 102451515 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718232|ref|YP_003873764.1| 50S ribosomal protein L17 [Spirochaeta thermophila DSM 6192] (147 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.135 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,948 Number of Sequences: 1700 Number of extensions: 3279 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 147 length of database: 492,079 effective HSP length: 69 effective length of query: 78 effective length of database: 374,779 effective search space: 29232762 effective search space used: 29232762 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718233|ref|YP_003873765.1| hypothetical protein STHERM_c05230 [Spirochaeta thermophila DSM 6192] (839 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 552,936 Number of Sequences: 1700 Number of extensions: 20368 Number of successful extensions: 88 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88 Number of HSP's gapped (non-prelim): 0 length of query: 839 length of database: 492,079 effective HSP length: 85 effective length of query: 754 effective length of database: 347,579 effective search space: 262074566 effective search space used: 262074566 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718234|ref|YP_003873766.1| SAM-dependent methyltransferase [Spirochaeta thermophila DSM 6192] (207 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.143 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 235,057 Number of Sequences: 1700 Number of extensions: 10842 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 207 length of database: 492,079 effective HSP length: 73 effective length of query: 134 effective length of database: 367,979 effective search space: 49309186 effective search space used: 49309186 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718235|ref|YP_003873767.1| ribonuclease HI [Spirochaeta thermophila DSM 6192] (143 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 193,098 Number of Sequences: 1700 Number of extensions: 9232 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 143 length of database: 492,079 effective HSP length: 69 effective length of query: 74 effective length of database: 374,779 effective search space: 27733646 effective search space used: 27733646 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718236|ref|YP_003873768.1| hypothetical protein STHERM_c05260 [Spirochaeta thermophila DSM 6192] (510 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 489,627 Number of Sequences: 1700 Number of extensions: 20545 Number of successful extensions: 128 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 128 Number of HSP's gapped (non-prelim): 0 length of query: 510 length of database: 492,079 effective HSP length: 81 effective length of query: 429 effective length of database: 354,379 effective search space: 152028591 effective search space used: 152028591 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718237|ref|YP_003873769.1| hypothetical protein STHERM_c05270 [Spirochaeta thermophila DSM 6192] (405 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 433,815 Number of Sequences: 1700 Number of extensions: 21918 Number of successful extensions: 75 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75 Number of HSP's gapped (non-prelim): 0 length of query: 405 length of database: 492,079 effective HSP length: 79 effective length of query: 326 effective length of database: 357,779 effective search space: 116635954 effective search space used: 116635954 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718238|ref|YP_003873770.1| UvrABC system protein B [Spirochaeta thermophila DSM 6192] (661 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601169|ref|NP_147698.1| DNA repair helicase [Aeropyrum pern... 45 4e-06 >gi|14601169|ref|NP_147698.1| DNA repair helicase [Aeropyrum pernix K1] Length = 539 Score = 45.4 bits (106), Expect = 4e-06 Identities = 65/268 (24%), Positives = 105/268 (39%), Gaps = 62/268 (23%) Query: 323 LLDYFPDRFLVFIDESHVTLPQLKAMYEGDRSRKLSLVEYGFRLPSALDNRPLRYEEFEA 382 L FP FLVF + H+ + K R S Y L + ++ R+EE + Sbjct: 265 LAPLFP--FLVFDEAHHIPADKFK------RIASASPAPYRMGLSATIEREDGRHEEVYS 316 Query: 383 IVPQVIYVSATPE--------------------------EEELSKSSQVV------EQII 410 +V V+Y S+ E E+L + +++ E+I+ Sbjct: 317 LVGGVVYSSSPGELTRKGYLAPFVIRRVKVELEEEEKRLYEDLKRKYRILARGRSFEKIL 376 Query: 411 RPTGLLDPEVE------------VRPTEGQIDDLYAEIRKRVEKGQRVLVTTLTKKMAED 458 DP V+ +E +I + +R+ + +G +V+V T ++ AE+ Sbjct: 377 EDARRGDPTAIEAIRVNTRMKEIVQLSESKIRAVEKLVREELSRGSKVIVFTQYRRQAEE 436 Query: 459 LTDYLQSLGLRVRYLHAEVETIERVELLRDLRAGEFDVLVGINLLREGLDLPEVALVAIL 518 + +L LH +E R L RA + LV + EGLD+P+ A V IL Sbjct: 437 IARRTGAL-----LLHGGLERRVREATLAKFRALKAGALVVTTVGDEGLDIPD-ANVGIL 490 Query: 519 DADKIGFLRSATSLIQIMGRAARNAEGK 546 + S IQ +GR R EGK Sbjct: 491 ----VSGTGSRRQFIQRLGRLLRPGEGK 514 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 600,203 Number of Sequences: 1700 Number of extensions: 26119 Number of successful extensions: 111 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 110 Number of HSP's gapped (non-prelim): 2 length of query: 661 length of database: 492,079 effective HSP length: 83 effective length of query: 578 effective length of database: 350,979 effective search space: 202865862 effective search space used: 202865862 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718239|ref|YP_003873771.1| hypothetical protein STHERM_c05290 [Spirochaeta thermophila DSM 6192] (117 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 150,224 Number of Sequences: 1700 Number of extensions: 7607 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 0 length of query: 117 length of database: 492,079 effective HSP length: 66 effective length of query: 51 effective length of database: 379,879 effective search space: 19373829 effective search space used: 19373829 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718240|ref|YP_003873772.1| phosphate ABC transporter substrate-binding protein [Spirochaeta thermophila DSM 6192] (310 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600404|ref|NP_146918.1| phosphate ABC transporter substrate... 47 8e-07 >gi|14600404|ref|NP_146918.1| phosphate ABC transporter substrate-binding protein [Aeropyrum pernix K1] Length = 373 Score = 46.6 bits (109), Expect = 8e-07 Identities = 81/363 (22%), Positives = 135/363 (37%), Gaps = 74/363 (20%) Query: 4 VLSLLAGIVLASGFVWAGG-QGESGDLSGTIRIA----GSSTVYPITVAMAEEFNRIQPG 58 V+ L G+ LASG W GG QGES SG ++ GS+ +YP A +EE + P Sbjct: 14 VVLLGIGLALASG--WLGGEQGESSGGSGPAQVVLQGEGSTFIYPQIQAWSEEIKKTYPW 71 Query: 59 VQIAVQSXXXXXXXXXXXIPGKTEINDASRPIKESELEQVRAQGDDALEFQVAIDAVTVV 118 + I G + + P+ E A + ++ V I + +V Sbjct: 72 ITINYNPTGSGAGQSAFK-DGVVDFAGSDTPLPR---EVWSAMQGNVIQIPVVIGMLAIV 127 Query: 119 VNPHADWVDDVTIE--QLRHIWRP-----DDPAQKWSDVDPSWPDEPFELYGPTSASGTF 171 N ++D+ ++ + I++ DDP + S P E + +SGT Sbjct: 128 YN--IPGLEDLKLDAKTIALIYKGEIEYWDDPRIASLNPGASLPHEKIVAVHRSDSSGTT 185 Query: 172 DFFTEKV-MGEEDLSRSDYQGTEED---------------NTIVQAVSGSKYALGYFGMA 215 FT + G D+ D G D +++ V + Y++GY A Sbjct: 186 HVFTIFLHKGAPDVWTEDLVGKSVDWPVDATGRGVGGKGNQGVMEVVKNTPYSIGYVEYA 245 Query: 216 YYLENTNRVKALKVNG-----VAPSLETARTY---------------------------- 242 Y ++ V V + PS E A+ Sbjct: 246 YVVKAGEGVNVALVANRDDVFLKPSPEGAQAAASGAVQNLPDSPDDDWSTGYDAIIYAPG 305 Query: 243 --EYPLSRPIFIYVRKSALARPEVAAFVRFYIERTNSSLISEI--GYVPVTDEVVKENLA 298 YP++ F+ K R + A +F IE N+ ++I GY+P+ DE+ + N+ Sbjct: 306 KDSYPITSWSFLLFYKQYNDRDKAEAIKKF-IEWINTEGQTKIIEGYIPIPDEIRQINMK 364 Query: 299 KLE 301 +E Sbjct: 365 AVE 367 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 295,396 Number of Sequences: 1700 Number of extensions: 11819 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 3 length of query: 310 length of database: 492,079 effective HSP length: 77 effective length of query: 233 effective length of database: 361,179 effective search space: 84154707 effective search space used: 84154707 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718241|ref|YP_003873773.1| transporter [Spirochaeta thermophila DSM 6192] (305 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430853|ref|NP_146919.2| phosphate ABC transporter permease... 105 2e-24 gi|14600406|ref|NP_146920.1| phosphate ABC transporter permease ... 98 3e-22 gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease... 53 8e-09 >gi|118430853|ref|NP_146919.2| phosphate ABC transporter permease [Aeropyrum pernix K1] Length = 310 Score = 105 bits (261), Expect = 2e-24 Identities = 65/217 (29%), Positives = 112/217 (51%), Gaps = 25/217 (11%) Query: 41 SLSFFREVSPLHFLTSTRWSPTIQPYSFGVLPLLSGTLAFTLCTALIALPIGLLTAIFLA 100 S+ F++ FL S S +P +G+L ++GTL + ++ LP L IF Sbjct: 37 SIPAFQKYGLNLFLNSAWKSLETRPGDYGLLVPIAGTLVSAMLAVVLGLPASLSAVIFAE 96 Query: 101 EYAPEGL---RAVLKPALEVLAGIPTVVYGYFALVYVTPFLKTYLFPEISTF-------- 149 E P + R ++++ G+PT+VYG + + ++ P LK L + T+ Sbjct: 97 EVIPPTMYRVREAFNTIVDMMTGLPTIVYGLWGVTFLAPALKGTLLEWLYTYLSFIPLFS 156 Query: 150 -------NTLSASIVVAIMIIPTVSSISEDAMRAVPRSLRYAAYALGTTKFQTVRT---V 199 L+AS+++A+MI+P + S+ ++ R +PR+ R AA +LGTTK++ R + Sbjct: 157 CKPLTGTTILTASLLLALMIVPFIYSVVRESYRQIPRTYREAALSLGTTKYEYTRLMLGM 216 Query: 200 VLPSALSGIVSSFILGISRVIGETMAVTIAAGNLSRM 236 V P+ L+G+ ++G R GET+AV + GN M Sbjct: 217 VRPAILAGV----LIGFGRAAGETVAVALVVGNTFNM 249 >gi|14600406|ref|NP_146920.1| phosphate ABC transporter permease [Aeropyrum pernix K1] Length = 284 Score = 97.8 bits (242), Expect = 3e-22 Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 11/183 (6%) Query: 51 LHFLTSTRWSPTIQPYSFGVLPLLSGTLAFTLCTALIALPIGLLTAIFLAEYAPEGLRAV 110 + F T+T P + GV P + G+L + TA+I +P+ +LTAIF+ EY L + Sbjct: 47 IEFFTATPGPPGSEILG-GVGPAILGSLWLAITTAIIGVPLSVLTAIFIVEYRENPLAKI 105 Query: 111 LKPALEVLAGIPTVVYGYFA-LVYVTPFLKTYLFPEISTFNTLSASIVVAIMIIPTVSSI 169 K L IPTV+ G LV VTP + ++ L+ SI +AI+++P S Sbjct: 106 AKVFSGSLLEIPTVLIGMLVFLVVVTP---------MGHYSLLAGSIALAIVMLPYTVSY 156 Query: 170 SEDAMRAVPRSLRYAAYALGTTKFQTVRTVVLPSALSGIVSSFILGISRVIGETMAVTIA 229 E A+ VP++ R A Y+LG T+ Q V VV+ A GI + ++G+S+V+ ET + Sbjct: 157 VERALENVPKTYREAGYSLGMTRAQVVAKVVVGIARRGIAAGVLIGLSKVVAETAPLLFT 216 Query: 230 AGN 232 G+ Sbjct: 217 IGS 219 >gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease ModB [Aeropyrum pernix K1] Length = 261 Score = 53.1 bits (126), Expect = 8e-09 Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 8/166 (4%) Query: 70 VLPLLSGTLAFTLCTALIALPIGLLTAIFLAEYAPEGLRAVLKPALEVLAGIPTVVYGYF 129 VL L S T++ L L P A +A R + + L +L IP V G Sbjct: 49 VLSLGSSTISSVLAVTLATAP-----AYAMARQEGRLTRLISQLHL-LLLSIPPVGLGTA 102 Query: 130 ALVYVTPFLKTYLFPEISTFNTLSASIVVAIMIIPTVSSIS--EDAMRAVPRSLRYAAYA 187 AL+ T + E ++++A +++ T ++S VPR L AA A Sbjct: 103 ALILFTRYPPLNSISETLGLFFSPKAVILAQLLVTTPIAVSMLTGVFSMVPRELEEAAEA 162 Query: 188 LGTTKFQTVRTVVLPSALSGIVSSFILGISRVIGETMAVTIAAGNL 233 G + Q + +VLP +L GI+S+ + R +GE A + AGN+ Sbjct: 163 YGAGRLQILIRIVLPLSLPGILSALAVTFFRALGEFGATLVLAGNI 208 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 269,725 Number of Sequences: 1700 Number of extensions: 10712 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 3 length of query: 305 length of database: 492,079 effective HSP length: 76 effective length of query: 229 effective length of database: 362,879 effective search space: 83099291 effective search space used: 83099291 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718242|ref|YP_003873774.1| transporter [Spirochaeta thermophila DSM 6192] (300 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600406|ref|NP_146920.1| phosphate ABC transporter permease ... 94 3e-21 gi|118430853|ref|NP_146919.2| phosphate ABC transporter permease... 55 3e-09 gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease... 41 3e-05 >gi|14600406|ref|NP_146920.1| phosphate ABC transporter permease [Aeropyrum pernix K1] Length = 284 Score = 94.4 bits (233), Expect = 3e-21 Identities = 74/280 (26%), Positives = 132/280 (47%), Gaps = 14/280 (5%) Query: 22 RIKDRIFL---GVAFLATVWGLLSLAGLLVYVFSDAIGWLDWQFLTSPPSRFPEK--AGV 76 R+K++ F+ + L TV L + ++ S I +F T+ P + GV Sbjct: 6 RLKEKAFILLVTLITLVTVAPLFHIIAMVTLKGSYVIVKAGIEFFTATPGPPGSEILGGV 65 Query: 77 GPVLAGSFYLIVLVGVMVFPFGVGAAIYLEEYAREGRLTRLIETNIANLAGVPSIXXXXX 136 GP + GS +L + ++ P V AI++ EY RE L ++ + +L +P++ Sbjct: 66 GPAILGSLWLAITTAIIGVPLSVLTAIFIVEY-RENPLAKIAKVFSGSLLEIPTVLIGML 124 Query: 137 XXXXXXXXXXXPIG--CLLVAGLTLMLRVLPIVIVSAQEAIRAVPDSHRFASLGMGTTRW 194 P+G LL + L + +LP + + A+ VP ++R A +G TR Sbjct: 125 VFLVVVT----PMGHYSLLAGSIALAIVMLPYTVSYVERALENVPKTYREAGYSLGMTRA 180 Query: 195 QMITSVVLPEAFPGIMTGIILALANAMGETAPLIM-VGVAHSIF-TPPRGLLSAFGALPL 252 Q++ VV+ A GI G+++ L+ + ETAPL+ +G A S + P LL ALPL Sbjct: 181 QVVAKVVVGIARRGIAAGVLIGLSKVVAETAPLLFTIGSARSNYPLYPSDLLQPGDALPL 240 Query: 253 QIFAWSDYPKPEFQHGVVPAAIVVLLVTLMLLNGIAVYLR 292 IF ++ P +Q +A ++ + L + + + ++ Sbjct: 241 LIFQFAQTPYENWQELAWGSAFILTAIVLATFSAMRLIVK 280 >gi|118430853|ref|NP_146919.2| phosphate ABC transporter permease [Aeropyrum pernix K1] Length = 310 Score = 54.7 bits (130), Expect = 3e-09 Identities = 58/256 (22%), Positives = 103/256 (40%), Gaps = 41/256 (16%) Query: 24 KDRIFLGVAFLATVWGLLSLAGLLVYVFSDAIGWLD-----------WQFLTSPPSRFPE 72 +DR F + F A+V L L V + +I W+ L + P + Sbjct: 7 RDRPFFTILFTASVISASILVILFVVLLYYSIPAFQKYGLNLFLNSAWKSLETRPGDY-- 64 Query: 73 KAGVGPVLAGSFYLIVLVGVMVFPFGVGAAIYLEEYAREG--RLTRLIETNIANLAGVPS 130 G+ +AG+ +L V+ P + A I+ EE R+ T + + G+P+ Sbjct: 65 --GLLVPIAGTLVSAMLAVVLGLPASLSAVIFAEEVIPPTMYRVREAFNTIVDMMTGLPT 122 Query: 131 IXXXXXXXXXXXXXXXXPI--------------GC-------LLVAGLTLMLRVLPIVIV 169 I + C +L A L L L ++P + Sbjct: 123 IVYGLWGVTFLAPALKGTLLEWLYTYLSFIPLFSCKPLTGTTILTASLLLALMIVPFIYS 182 Query: 170 SAQEAIRAVPDSHRFASLGMGTTRWQMITSVVLPEAFPGIMTGIILALANAMGETAPLIM 229 +E+ R +P ++R A+L +GTT+++ T ++L P I+ G+++ A GET + + Sbjct: 183 VVRESYRQIPRTYREAALSLGTTKYE-YTRLMLGMVRPAILAGVLIGFGRAAGETVAVAL 241 Query: 230 VGVAHSIFTPPRGLLS 245 V + F P LL+ Sbjct: 242 --VVGNTFNMPTCLLA 255 >gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease ModB [Aeropyrum pernix K1] Length = 261 Score = 41.2 bits (95), Expect = 3e-05 Identities = 46/198 (23%), Positives = 73/198 (36%), Gaps = 23/198 (11%) Query: 110 REGRLTRLIETNIANLAGVPSIXXXXXXXXXXXX-----XXXXPIGCLLVAGLTLMLRVL 164 +EGRLTRLI L +P + +G ++ ++L Sbjct: 76 QEGRLTRLISQLHLLLLSIPPVGLGTAALILFTRYPPLNSISETLGLFFSPKAVILAQLL 135 Query: 165 ---PIVIVSAQEAIRAVPDSHRFASLGMGTTRWQMITSVVLPEAFPGIMTGIILALANAM 221 PI + VP A+ G R Q++ +VLP + PGI++ + + A+ Sbjct: 136 VTTPIAVSMLTGVFSMVPRELEEAAEAYGAGRLQILIRIVLPLSLPGILSALAVTFFRAL 195 Query: 222 GE-TAPLIMVGVAHSIFTPPRGLLSAFGALPLQIFAWSDYPKPEFQHGVVPAAIVVLLVT 280 GE A L++ G + LPL ++ E + + V LVT Sbjct: 196 GEFGATLVLAG----------NIPGRTETLPLALYNAISLADVETASAIYTLVLAVGLVT 245 Query: 281 LMLLNGIAVYLRHRFSKR 298 L G+ L R KR Sbjct: 246 L----GVHTLLYTRLVKR 259 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.142 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 310,070 Number of Sequences: 1700 Number of extensions: 14210 Number of successful extensions: 74 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 3 length of query: 300 length of database: 492,079 effective HSP length: 76 effective length of query: 224 effective length of database: 362,879 effective search space: 81284896 effective search space used: 81284896 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718243|ref|YP_003873775.1| transporter [Spirochaeta thermophila DSM 6192] (278 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 217 2e-58 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 106 7e-25 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 103 4e-24 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 103 5e-24 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 103 6e-24 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 102 1e-23 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 102 1e-23 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 101 2e-23 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 100 5e-23 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 98 2e-22 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 96 8e-22 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 93 6e-21 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 92 1e-20 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 92 1e-20 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 86 1e-18 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 80 6e-17 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 78 2e-16 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 78 2e-16 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 77 4e-16 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 76 1e-15 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 75 1e-15 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 75 2e-15 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 74 5e-15 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 72 1e-14 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 72 1e-14 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 68 2e-13 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 68 3e-13 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 66 1e-12 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 64 4e-12 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 63 7e-12 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 59 1e-10 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 58 2e-10 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 58 2e-10 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 56 1e-09 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 54 4e-09 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 54 4e-09 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 53 7e-09 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 52 1e-08 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 44 3e-06 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 43 1e-05 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 217 bits (553), Expect = 2e-58 Identities = 117/255 (45%), Positives = 168/255 (65%), Gaps = 12/255 (4%) Query: 26 IETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIEG 85 + GL+V+ L I+ +TA +GPSG GKSTL+R NR+ +++ R+EG Sbjct: 6 VRVSGLNVWITDKHILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEG 65 Query: 86 EVLFHGKNVYDPDVDPVLLRRRIGMVFQQPNPFPK-SIYDNVAYGPRMYGI-KDKATLDE 143 EV + NV D P +RR GMVFQ+PNPFP +IY+NVA GP+++G+ K+K LDE Sbjct: 66 EVWINNMNVMKED--PYNIRRYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDE 123 Query: 144 IVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDPIS 203 IVE +L+ A LWDEVKD L LSGGQ+QRL +AR +A+KP V+L+DEP + +DP+S Sbjct: 124 IVEWALKMAHLWDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVS 183 Query: 204 TARIEELMQELARQ--YTIVIVTHNMQQAARVSDYTAFMYLHEDWGAGYIEEFGPTRELF 261 T +IE+ + E A++ T++IVTH QQAAR+SD F+Y G + E+GPT+EL Sbjct: 184 TVKIEQSIVEYAKEEMATVIIVTHTPQQAARISDQILFLY------EGRVIEYGPTKELV 237 Query: 262 LNPKKKRTEDYISGK 276 L P+ + T+ ++ G+ Sbjct: 238 LRPRHELTKKFLGGE 252 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 106 bits (264), Expect = 7e-25 Identities = 85/258 (32%), Positives = 131/258 (50%), Gaps = 32/258 (12%) Query: 23 EVIIETRGLSVYY---------GYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNR 73 E+++ET GL Y+ Y A+ ++ + I + + +G SG GK+T R R Sbjct: 25 ELLVETVGLKKYFPVKSLFFTRAYVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILR 84 Query: 74 MNEVVADVRIEGEVLFHGKNVYDPDVDPVL-LRRRIGMVFQQP----NPFPKSIYDNVAY 128 + E G + F G +V + RRR ++FQ P NP K+I++ +A Sbjct: 85 LEEPTG-----GRIFFDGIDVMKLRGRGLKEFRRRAQIIFQDPYGSLNP-RKTIFNLIAE 138 Query: 129 GPRMYGIKDKATLDEIVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPE 188 +++GIK L E + L L + L + SGGQ+QR+ IAR +A+KPE Sbjct: 139 PIKVHGIK-VGDLQEYIVSLLYQVGLNETH---LYRYPHEFSGGQRQRIAIARVLALKPE 194 Query: 189 VILMDEPASALDPISTARIEELMQELARQY--TIVIVTHNMQQAARVSDYTAFMYLHEDW 246 I++DEP SALD A+I L+++L R+Y T + ++H++ +SDY A MYL Sbjct: 195 FIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTYLFISHDLGVVRYMSDYIAVMYL---- 250 Query: 247 GAGYIEEFGPTRELFLNP 264 G I EFG E+F P Sbjct: 251 --GKIVEFGEAEEVFEKP 266 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 103 bits (258), Expect = 4e-24 Identities = 80/243 (32%), Positives = 121/243 (49%), Gaps = 25/243 (10%) Query: 26 IETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIEG 85 + G+ +G +AL I+L I +GPSGCGK+T LR + A G Sbjct: 4 VRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDA-----G 58 Query: 86 EVLFHGKNVYD-PDVDPVLLRRRIGMVFQQPNPFPKS-IYDNVAYGPRMYGIKDKATLDE 143 V F G++V P D R + MVFQ +P ++DN+A+ ++ K DE Sbjct: 59 RVYFDGRDVTGLPPKD-----RNVAMVFQSYALWPHMRVFDNIAFPLKI----KKLPRDE 109 Query: 144 IVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDPIS 203 IV AA L E+ +L + LSGGQQQR+ +AR I +PEV+LMDEP S LD I Sbjct: 110 IVRRVRWAAELL-EIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAIL 168 Query: 204 TARIEELMQELARQ--YTIVIVTHNMQQAARVSDYTAFMYLHEDWGAGYIEEFGPTRELF 261 ++ +++L R+ T++ VTH+ +A + D M G I++ G +++ Sbjct: 169 RIKMRSEIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVM------NFGEIQQVGTPSDVY 222 Query: 262 LNP 264 P Sbjct: 223 HRP 225 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 103 bits (257), Expect = 5e-24 Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 23/245 (9%) Query: 26 IETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIEG 85 I G+ +G +A+ ++L I +GPSGCGK+T LR + + EG Sbjct: 4 IRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGL-----EYPDEG 58 Query: 86 EVLFHGKNVYDPDVDPVLLRRRIGMVFQQPNPFPK-SIYDNVAYGPRMYGIKDKATLDEI 144 +L G++V D R + MVFQ +P S++DN+A+ + + T D+I Sbjct: 59 RILIDGEDVTFKDPKD----RNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDI 114 Query: 145 VEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDPI-- 202 + A L ++D+L + LSGGQQQR+ +AR + +P+V LMDEP S LD + Sbjct: 115 RRRVIEVAKLL-RIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLR 173 Query: 203 --STARIEELMQELARQYTIVIVTHNMQQAARVSDYTAFMYLHEDWGAGYIEEFGPTREL 260 A +++L ++L + T V VTH+ +A ++D A M G + + G E+ Sbjct: 174 LAMRAELKKLQKDL--KITTVYVTHDQAEAMSMADRIAVM------NKGRVVQVGTPEEV 225 Query: 261 FLNPK 265 ++ PK Sbjct: 226 YMRPK 230 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 103 bits (256), Expect = 6e-24 Identities = 83/245 (33%), Positives = 120/245 (48%), Gaps = 29/245 (11%) Query: 26 IETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIEG 85 I ++ +G +AL ++L I I +GPSGCGK+T LR V+A Sbjct: 4 IRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLR-------VIAGFETPD 56 Query: 86 EVLFHGKNVYDPDVDPVLLR---RRIGMVFQQPNPFPKS-IYDNVAYGPRMYGIKDKATL 141 E VY D +L+ R MVFQ +P ++DN+AYG ++ K Sbjct: 57 E-----GRVYIGSRDVTMLKPYERNTAMVFQNYALWPHMRVFDNIAYGLKLR----KLPR 107 Query: 142 DEIVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDP 201 EIV AA L E+ +L + LSGGQQQR+ +AR I +PEV+LMDEP S LD Sbjct: 108 SEIVRRVRWAAELL-EIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDA 166 Query: 202 ISTARIEELMQELARQ--YTIVIVTHNMQQAARVSDYTAFMYLHEDWGAGYIEEFGPTRE 259 ++ E + L ++ TIV VTH+ ++A +S A M G +E+ G E Sbjct: 167 HLRLKMREEIVRLQKRLGVTIVYVTHDQEEALSISHRVAVM------NRGRVEQVGTPME 220 Query: 260 LFLNP 264 ++ P Sbjct: 221 VYEKP 225 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 102 bits (254), Expect = 1e-23 Identities = 77/248 (31%), Positives = 131/248 (52%), Gaps = 20/248 (8%) Query: 25 IIETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIE 84 ++E RGL V Y L +++ + +GPSG GKSTLL+ R+ E + Sbjct: 4 LLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDS----- 58 Query: 85 GEVLFHGKNVYDPDVDPV-LLRRRIGMVFQQPNPFPK-SIYDNVAYG-PRMYGIKDKATL 141 G ++F G +V + ++RR+IG + Q + FP ++ N+ Y + G+ + Sbjct: 59 GSIVFRGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRR--- 115 Query: 142 DEIVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDP 201 + E +++ ++ ++D+ + LSGGQQQR +AR +A++P+++L+DEP SALDP Sbjct: 116 -DAEERAVKYLSMLG-IEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDP 173 Query: 202 ISTARI-EELMQELARQYTIVIVTHNMQQAARVSDYTAFMYLHEDWGAGYIEEFGPTREL 260 S A + E L + +++VTH A +V+D AFM ED G ++E G EL Sbjct: 174 ESRADVLEALFRVATLGKAMIVVTHEADFAVKVADRMAFM---ED---GIVKEEGKPSEL 227 Query: 261 FLNPKKKR 268 ++ R Sbjct: 228 VEGSERVR 235 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 102 bits (253), Expect = 1e-23 Identities = 79/235 (33%), Positives = 119/235 (50%), Gaps = 24/235 (10%) Query: 35 YGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRI--EGEVLFHGK 92 YG AL ++ ++ ITA +GPSGCGK+T+L+ V+A + G V F G Sbjct: 15 YGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLK-------VIAGLLKPRRGRVFFGGV 67 Query: 93 NVYDPDVDPVLLRRRIGMVFQQPNPFPK-SIYDNVAYGPRMYGIKDKATLDEIVEESLRA 151 + + RR +G VFQ FP ++YDNVA+G R G + VE +L Sbjct: 68 DYTGLPPE----RRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQ-VEWALET 122 Query: 152 AALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTARIEELM 211 L ++ +G+ LSGGQQQR+ +AR IA +P V+L+DEP S LD R+ + Sbjct: 123 VGLTPP-REFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAEL 181 Query: 212 QELARQY--TIVIVTHNMQQAARVSDYTAFMYLHEDWGAGYIEEFGPTRELFLNP 264 + L R+ T++ VTH+ +A ++D M G I + G E++ P Sbjct: 182 KRLQRKLGSTMIYVTHDQWEAMELADTLVIM------RDGRIVQHGTPSEVYTRP 230 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 101 bits (252), Expect = 2e-23 Identities = 69/251 (27%), Positives = 130/251 (51%), Gaps = 23/251 (9%) Query: 26 IETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIEG 85 ++ G+ +G +A+ D+NL I + +GPSG GK+TLL + + G Sbjct: 4 VKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPS-----RG 58 Query: 86 EVLFHGKNVYDPDVDPVLLRRRIGMVFQQPNPFPK-SIYDNVAYGPRMYGIKDKATLDEI 144 + F+ +V D + +R IG+VFQ +P ++Y+N+A+ R+ + A Sbjct: 59 RIYFNDVDVTDLPPN----KRNIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPA----- 109 Query: 145 VEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDPIST 204 ++E + + A ++ +L + LSGGQQQR+ +AR + +PEV+L+DEP S LD + Sbjct: 110 IKEKVLSVAKLLGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLR 169 Query: 205 ARIEELMQELARQ--YTIVIVTHNMQQAARVSDYTAFMYLHEDWGAGYIEEFGPTRELFL 262 +I +++L ++ T + VTH+ +A ++D A + +G I++ G +++ Sbjct: 170 IKIRSELKKLQKELGITAIYVTHDQSEALAMADRIAII------ASGVIQQVGKPWDVYY 223 Query: 263 NPKKKRTEDYI 273 P+ +I Sbjct: 224 KPRNVFVASFI 234 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 100 bits (248), Expect = 5e-23 Identities = 80/261 (30%), Positives = 129/261 (49%), Gaps = 34/261 (13%) Query: 23 EVIIETRGLSVYY----GYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVV 78 E+++ R L+V Y G AL + L +Y+ I A +G SGCGKSTL R R+ Sbjct: 3 EIVLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSN 62 Query: 79 ADVRIEGEVLFHGK-NVYD----PDVDPVLLRRRI-GMVFQQPNP-------FPKSIYDN 125 A + +L G N D + + V +R +I M+FQ P+ K + D+ Sbjct: 63 AVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDH 122 Query: 126 VAYGPRMYGIKDKATLDEIVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAV 185 V+ +K +++I +E L+ + +L K LSGG +QR+ IA ++ Sbjct: 123 VS--------GEKRRVEKIAQEILKKLMM-PAPHMILEKYPHELSGGMKQRIVIAASLIT 173 Query: 186 KPEVILMDEPASALDPISTARIEELMQELARQY--TIVIVTHNMQQAARVSDYTAFMYLH 243 +P +I+ DEP +ALD A+I +++ L + TI+++THN+ AA ++D A MY Sbjct: 174 RPRIIIADEPTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMY-- 231 Query: 244 EDWGAGYIEEFGPTRELFLNP 264 AG++ E LF P Sbjct: 232 ----AGHVVEVADVFSLFERP 248 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 98.2 bits (243), Expect = 2e-22 Identities = 76/257 (29%), Positives = 129/257 (50%), Gaps = 20/257 (7%) Query: 25 IIETRGLSVYY----GYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVAD 80 +++ + L V+Y G A+ ++L + K + +G SG GKSTL R+ Sbjct: 3 VLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGR 62 Query: 81 VRIEGEVLFHGKNVYDPDVDPV--LLRRRIGMVFQQPNPFP---KSIYDNVAYGPRMYGI 135 + + G +L+ G ++ + + R IGMVFQ P + +++ +A +G+ Sbjct: 63 I-VGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGL 121 Query: 136 KDKATLDEIVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEP 195 + E + A L +D LSGGQ+QR+ IA +A++P++++ DEP Sbjct: 122 ASSGSEAESMAGD--ALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEP 179 Query: 196 ASALDPISTARIEELMQEL--ARQYTIVIVTHNMQQAARVSDYTAFMYLHEDWGAGYIEE 253 +ALD + A+I +LM++L R T+++VTH++ AA SD A MY AG + E Sbjct: 180 TTALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMY------AGELVE 233 Query: 254 FGPTRELFLNPKKKRTE 270 GP ++ NP TE Sbjct: 234 IGPAEDVVSNPIHPYTE 250 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 96.3 bits (238), Expect = 8e-22 Identities = 83/267 (31%), Positives = 126/267 (47%), Gaps = 35/267 (13%) Query: 25 IIETRGLSVYYGYHMALYD---------------INLPIYKNRITAFIGPSGCGKSTLLR 69 I+ RGL V+Y + +L ++L I + + A +G SGCGK+TL + Sbjct: 7 IVSIRGLKVHYPVYYSLLKRILGRPDAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLGK 66 Query: 70 CFNRMNEVV-ADVRIEGEVLFHGKNVYDPDVDPVLLRRRIGMVFQQP----NPFPKSIYD 124 + E + GE+L + D LRR++ MVFQ P +P + D Sbjct: 67 AIVGIEEPSDGAIYYRGELLTPHRLARDRR-----LRRKLQMVFQDPYKSLDPL-MPVGD 120 Query: 125 NVAYGPRMYGIKDKATLDEIVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIA 184 VA ++G+ E L L ++ + LSGGQ+QR+ IART+ Sbjct: 121 QVAEPLVIHGLARGEEARRRAVEMLETVGLTPG-REFYWRKPHQLSGGQRQRVAIARTLV 179 Query: 185 VKPEVILMDEPASALDPISTARIEELMQELARQ--YTIVIVTHNMQQAARVSDYTAFMYL 242 ++PEVI+ DEP S +D A I +L+ + R+ TIV++TH++ A V+D A MYL Sbjct: 180 LEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTGATIVLITHDIAVARAVADRIAVMYL 239 Query: 243 HEDWGAGYIEEFGPTRELFLNPKKKRT 269 G I E G R + NP+ T Sbjct: 240 ------GKIVEVGEPRSVIENPRHPYT 260 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 93.2 bits (230), Expect = 6e-21 Identities = 69/216 (31%), Positives = 114/216 (52%), Gaps = 20/216 (9%) Query: 25 IIETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIE 84 II+ +S YG L+D++L I + IT +GP+G GKSTLL+ V + Sbjct: 5 IIKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVY-----K 59 Query: 85 GEVLFHGKNV-YDPDVDPVLLRRRIGM--VFQQPNPFPK-SIYDNVAYGPRMYGIKDKAT 140 G VLF +V + P D R +IGM +FQ N F + ++Y+N+ Y + + Sbjct: 60 GRVLFENTDVTHMPPHD----RAKIGMTFIFQLENIFRELTVYENLRLAG--YDLPEDVF 113 Query: 141 LDEIVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALD 200 D + E +++ +K+ LG+ A LSGG++Q L +A I KP+V L+DEP + L Sbjct: 114 RDRLEE----VFSMFPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLS 169 Query: 201 PISTARIEELMQELARQ-YTIVIVTHNMQQAARVSD 235 P + ++ L ++ YT+V+V N++ + + D Sbjct: 170 PKLAKEVLSYVRILNKEGYTVVLVEQNVKASLEIGD 205 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 92.4 bits (228), Expect = 1e-20 Identities = 79/258 (30%), Positives = 124/258 (48%), Gaps = 27/258 (10%) Query: 25 IIETRGLSVYY----GYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVAD 80 IIE L VY+ G A+ D++ I + +G +GCGKS R R+ Sbjct: 9 IIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGR 68 Query: 81 VRIEGEVLFH---GKNVYDPDVDPVLLRR----RIGMVFQQPNPFPKSIYDNVAY--GPR 131 + +EG++ ++ G+ V +D LRR I +FQ P+ +Y + Y G Sbjct: 69 I-VEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLY-TIGYQVGET 126 Query: 132 MYGIKDKATLDEIVEES---LRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPE 188 M +L E V + L+ + D K V LSGG +QR I +++ +P+ Sbjct: 127 MLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPH-ELSGGMKQRGVIGISLSNRPK 185 Query: 189 VILMDEPASALDPISTARIEELMQELARQY--TIVIVTHNMQQAARVSDYTAFMYLHEDW 246 +++ DEP +ALD A+I +L+ +L R++ T++++THN+ A D A MY Sbjct: 186 LLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMY----- 240 Query: 247 GAGYIEEFGPTRELFLNP 264 AG I E P ELF NP Sbjct: 241 -AGNIVEEAPVDELFSNP 257 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 92.0 bits (227), Expect = 1e-20 Identities = 88/287 (30%), Positives = 134/287 (46%), Gaps = 48/287 (16%) Query: 26 IETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNE-----VVAD 80 I T L GY A+ ++L + K I +G SG GK+TL + ++ V D Sbjct: 15 ITTFYLKKVIGYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFID 74 Query: 81 V---RIEG-----EVLFHGKNVYDPDV----------DPVLL--------RRRIGMVFQQ 114 + +E E L G+NV D+ DP + RR++ MV Q Sbjct: 75 IDKGELEEAVSIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQD 134 Query: 115 P----NPFPKSIYDNVAYGPRMYGI-KDKATLDEIVEESLRAAALWDEVKDVLGKSALAL 169 P NP K + + + R++GI K + V E L A L E D + L Sbjct: 135 PYSSLNPRMK-VGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFAD---RYPYEL 190 Query: 170 SGGQQQRLCIARTIAVKPEVILMDEPASALDPISTARIEELMQELARQY--TIVIVTHNM 227 SGGQ+QR+ IAR +A+ P+++++DEP SALD A+I L++EL ++Y T +++TH++ Sbjct: 191 SGGQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDI 250 Query: 228 QQAARVSDYTAFMYLHEDWGAGYIEEFGPTRELFLNPKKKRTEDYIS 274 +S MY +G I E P LF NP T+ +S Sbjct: 251 SVVRYMSSSVVVMY------SGKIMESAPKHILFTNPLHPYTKLLLS 291 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 85.9 bits (211), Expect = 1e-18 Identities = 58/216 (26%), Positives = 112/216 (51%), Gaps = 30/216 (13%) Query: 33 VYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIEGEVLFHGK 92 +Y+ + + + +++L + K IT IGP+G GK+TLL+ + + + G + G+ Sbjct: 13 MYHPFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGE 72 Query: 93 NVYDPDVDPVLLRRRIGMVFQQPNPFPKSIYDNVAYGPRMYGIKDKATLDEIVEESLRAA 152 ++ + + D + R G+++ V G R++ K+ T + +V + A Sbjct: 73 DITNREPDEIARR---GVIY-------------VMEGRRIF--KELTTEENLVSVAYAAG 114 Query: 153 ALWDEVKDVL----------GKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDPI 202 A D+++ VL G+ A LSGG+QQ L IA + +P+++++DEP+ L P Sbjct: 115 ASRDDIRSVLSYFPRLKERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPK 174 Query: 203 STARIEELMQELARQ--YTIVIVTHNMQQAARVSDY 236 T++I ++ L R+ TI++ N ++A +SDY Sbjct: 175 ITSQIYATIKMLHREEGLTILLAEQNARKALEISDY 210 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 80.1 bits (196), Expect = 6e-17 Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 22/203 (10%) Query: 40 ALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVA-DVRIEGEVLFHGKNVYDPD 98 AL ++ +Y+ I +F+GP+G GK+T +R + + + + R+ G +D Sbjct: 27 ALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAG---------FDVV 77 Query: 99 VDPVLLRRRIGMVFQQPNPFPKSIY--DNVAYGPRMYGIKDKATLDEIVEESLRAAALWD 156 + +R+RIG++ F + +N+ Y R+YGI + L ++E L L D Sbjct: 78 KERWEVRKRIGVMLSVERGFYWKLTGRENLYYFGRIYGIP-QGELKSRIKEVLDLVGLTD 136 Query: 157 EVKDVLG---KSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTARIEELMQE 213 LG K +S G + RL +AR + PEV+++DEP LDP S I +++ Sbjct: 137 -----LGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRS 191 Query: 214 LARQ-YTIVIVTHNMQQAARVSD 235 LA + TI I THNM +A +SD Sbjct: 192 LASEGRTIFITTHNMVEAEMISD 214 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 78.2 bits (191), Expect = 2e-16 Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 24/246 (9%) Query: 36 GYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIEG-EVLFHGKNV 94 G A+ ++ + + + G SG GKSTL ++ + V RI G ++ G +V Sbjct: 20 GIVKAVDGVSFTLRRGEVLGIAGESGSGKSTL--AWSILGLVPPPGRIVGGRIMIDGMDV 77 Query: 95 YDPDVDPVLLRRRI-----GMVFQQPNPFPKSIYD---NVAYGPRMYGIKDKATLDEIVE 146 + LRR++ MVFQ +Y + +++ + + V Sbjct: 78 --TSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVY 135 Query: 147 ESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTAR 206 E L + L + D + LSGGQ+QR+ IA +A++P++++ DEP +ALD + A+ Sbjct: 136 ELLESVGLHRSIAD---RYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQ 192 Query: 207 IEELMQELA--RQYTIVIVTHNMQQAARVSDYTAFMYLHEDWGAGYIEEFGPTRELFLNP 264 I L+++LA + +I+++TH++ A +++ MY G I E+GP+ +F P Sbjct: 193 ILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIMY------GGKIAEYGPSDAVFTKP 246 Query: 265 KKKRTE 270 + T+ Sbjct: 247 QHPYTQ 252 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 78.2 bits (191), Expect = 2e-16 Identities = 75/267 (28%), Positives = 126/267 (47%), Gaps = 30/267 (11%) Query: 23 EVIIETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVR 82 ++I+ L +G +AL +NL I + ++T IGP+G GK+TL+ + + Sbjct: 4 DIILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDG--- 60 Query: 83 IEGEVLFHGKNVYDPDVDPVLLRRRIGMV--FQQPNPFPK-SIYDNV-----AYGPRMY- 133 G VLF G+++ + ++G+V FQ P PF ++ +NV + G +Y Sbjct: 61 --GRVLFKGRDITGMSPHEI---SKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYL 115 Query: 134 -GIKDKATLDEIVEESLRAAAL--WDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVI 190 G+ + L + RA + W + + + + LSGGQ + L IAR I E+I Sbjct: 116 AGLARRLWLGFEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMI 175 Query: 191 LMDEPASALDPISTARIEELMQELARQ--YTIVIVTHNMQQAARVSDYTAFMYLHEDWGA 248 +MDEPA+ ++P I E ++ LAR+ T +I+ H + V +Y +Y Sbjct: 176 IMDEPAAGVNPRLAGSIMERIKYLAREKGITFLIIEHRI---GLVKEYVDRVYA---MSM 229 Query: 249 GYIEEFGPTRELFLNPKKKRTEDYISG 275 G + G E+ NP E Y+ G Sbjct: 230 GKVIASGKPDEVLNNPVV--LESYLGG 254 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 77.4 bits (189), Expect = 4e-16 Identities = 69/251 (27%), Positives = 121/251 (48%), Gaps = 26/251 (10%) Query: 23 EVIIETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVR 82 E ++E + + VYYG AL+ ++L +YK I A +G +G GK+T L + + + Sbjct: 4 EPLLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLK-----P 58 Query: 83 IEGEVLFHGKNVYDPDVDPVLLRRRIGM--VFQQPNPFPK-SIYDNVAYGPRMYGIKDKA 139 G +++ G+++ P R G+ V + FP+ ++Y+N+ K Sbjct: 59 RNGSIIWQGRDITGL---PAFKRVEEGISHVPEGRGIFPRLTVYENLRVAASTRRAK--- 112 Query: 140 TLDEIVEESL-RAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASA 198 E ++SL + ++ +K + A LSGG+QQ L IAR + +P +++MDEP+ Sbjct: 113 ---EHFQDSLEQVYTIFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLG 169 Query: 199 LDPISTARIEELMQELARQ--YTIVIVTHNMQQAARVSDYTAFMYLHEDWGAGYIEEFGP 256 L P + L L + TI++V N+ + +V+D M G I G Sbjct: 170 LAPKLARDVIYLASRLREELGVTILLVEQNVGLSLKVADRGYVM------ETGRIVLEGA 223 Query: 257 TRELFLNPKKK 267 + EL L+P+ K Sbjct: 224 SDELALDPRIK 234 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 75.9 bits (185), Expect = 1e-15 Identities = 57/217 (26%), Positives = 107/217 (49%), Gaps = 18/217 (8%) Query: 20 GKEEVIIETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVA 79 G + +E G+ G L D++L + + + +GP+G GK+TL R + A Sbjct: 3 GAGQPAVEAEGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYR--A 60 Query: 80 DVRIEGEVLFHGKNVYDPDVDPVLLRRRIGMVFQQPNPFPKSI-YDNVAYGPRMYGIKDK 138 D G V G+ V L RR+ + + P+ ++ + +YG++D Sbjct: 61 D---RGRVALLGEPVERAGGS---LFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGVED- 113 Query: 139 ATLDEIVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASA 198 L+ +EE+ R + L LG+ + S G ++RL +A +A+KP + ++DEP + Sbjct: 114 --LEGYLEEASRLSGLGGR----LGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAG 167 Query: 199 LDPISTARIEELMQELARQY--TIVIVTHNMQQAARV 233 LDP+ + I L++E + ++ T+++ +HNM + V Sbjct: 168 LDPVYSVGIRRLLKEYSERHGVTVLLSSHNMYEVESV 204 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 75.5 bits (184), Expect = 1e-15 Identities = 67/219 (30%), Positives = 108/219 (49%), Gaps = 24/219 (10%) Query: 25 IIETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIE 84 I E+RG + +AL +++L + + + A +GPSG GK+TLL ++ A Sbjct: 19 IYESRGERI-----VALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNA----- 68 Query: 85 GEVLFHGKNVYDPDVDPVLLRR--RIGMVFQQPNPFPK-SIYDNVAYGPRMYGIKDKATL 141 G V+ G V + + R R+G VFQQ N P + +N+ + G ++ Sbjct: 69 GRVIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIPTLTALENILLPMALAGKANRLRG 128 Query: 142 DEIVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDP 201 E+ LR L + + + LSGG+QQRL +A +A P +I+ DEP LD Sbjct: 129 QEL----LRRVGLGGKER----RYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDI 180 Query: 202 ISTARIEELMQELA--RQYTIVIVTHNMQQAARVSDYTA 238 + RI ++ E A R T+V+ TH+ + AR++D A Sbjct: 181 ATGERIVRILLEEAHSRGKTVVLTTHD-PRVARMADRVA 218 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 75.1 bits (183), Expect = 2e-15 Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 29/219 (13%) Query: 24 VIIETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRI 83 V+IE GL YG AL ++ + + ++GP+G GK+T +R + + Sbjct: 3 VVIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTS---- 58 Query: 84 EGEVLFHGKNVYDPDVDPVLLRRRIGMVFQQPNPFPKSIYDNVA------YGPRMYGIKD 137 G G +Y+P V RRR+G V P F Y V+ Y R+ G Sbjct: 59 -GSARVFGVELYNPGASGV--RRRVGYV---PGEF--EFYGGVSGGRMLDYWCRLVGGCS 110 Query: 138 KATLDEIVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPAS 197 + +V E L A L L ++ S G +Q L + + +P++++MDEP + Sbjct: 111 RG----VVRELLEAFPL------PLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTT 160 Query: 198 ALDPISTARIEELMQELARQ-YTIVIVTHNMQQAARVSD 235 LDP++ R+ + ++ AR+ T+ +H + + RV+D Sbjct: 161 GLDPLARGRVLDFVRSKAREGVTVFFSSHVLSEVQRVAD 199 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 73.6 bits (179), Expect = 5e-15 Identities = 69/251 (27%), Positives = 112/251 (44%), Gaps = 38/251 (15%) Query: 40 ALYDINLPIYKNRITAFIGPSGCGKST----LLRC---------FNRMNEVVADVRIEGE 86 A+ ++ I + + +G SGCGK+T +LR F EV+ ++ G Sbjct: 49 AVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERRGV 108 Query: 87 VLFHGKNVYDPDVDPVL--------LRRRIGMVFQQP--NPFPKSIYDNVAYGPRM-YGI 135 K++ D VD + LRR + +V+Q P + P+ + P + + I Sbjct: 109 -----KSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSI 163 Query: 136 KDKATLDEIVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEP 195 + +E+V L A L D + + LSGGQ+QR+ IAR + P +++ DEP Sbjct: 164 GNAREREEMVARMLEAVKL-TPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEP 222 Query: 196 ASALDPISTARIEELMQELARQY--TIVIVTHNMQQAARVSDYTAFMYLHEDWGAGYIEE 253 S LD A I EL+ + +++ +TH++ A + D A MYL G I E Sbjct: 223 VSMLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYL------GKIVE 276 Query: 254 FGPTRELFLNP 264 G R + P Sbjct: 277 TGDARRIIERP 287 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 72.4 bits (176), Expect = 1e-14 Identities = 56/222 (25%), Positives = 105/222 (47%), Gaps = 15/222 (6%) Query: 21 KEEVIIETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVAD 80 + E ++ L YG A+ ++ I + + + +GP+G GK+T ++ + + + Sbjct: 2 ESEAMVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTS- 60 Query: 81 VRIEGEVLFHGKNVYDPDVDPVLLRRRIGMVFQQPNPFPK-SIYDNVAYGPRMYGIKDKA 139 GE G ++ +P +RR IG+V Q + S +DNV R+YG+ Sbjct: 61 ----GEAWIAGYSIVR---EPGNVRRVIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSE 113 Query: 140 TLDEIVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASAL 199 E R + ++ + + SGG +++L IA ++ P+V+ +DEP L Sbjct: 114 A-----RERTREVLDYLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGL 168 Query: 200 DPISTARIEELMQELARQ-YTIVIVTHNMQQAARVSDYTAFM 240 D S + +++L R TI++ TH M++A +SD A + Sbjct: 169 DVHSRRSLWRYIEDLKRSAVTILLTTHYMEEAEMLSDRVAII 210 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 72.4 bits (176), Expect = 1e-14 Identities = 65/230 (28%), Positives = 113/230 (49%), Gaps = 34/230 (14%) Query: 40 ALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVAD---VRIEG-EVLFHGKNVY 95 AL ++L + + + + +GP+G GK+TL++ + + ++ D R+ G +V+ NV Sbjct: 28 ALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTL--LLPDSGWARVAGFDVVREANNV- 84 Query: 96 DPDVDPVLLRRRIGMVF--QQPNPFPKSIYDNVAYGPRMYGIKDKATLDEIVEESLRAAA 153 R RIG+V ++ + S +DN+ + ++YGI + V+E L Sbjct: 85 ---------RSRIGVVLGGERALYWRLSGWDNLWFFSQLYGIPPREAKRR-VKELLEIVG 134 Query: 154 L--WDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTARIEELM 211 L W V+ S G +QRL IAR + PEV+L+DEP LDP + + ++ Sbjct: 135 LEEWAHVR------VENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSII 188 Query: 212 QELARQ-YTIVIVTHNMQQAARVSDYTAFMYLHEDWGAGYIEEFGPTREL 260 + + R+ T+++ TH M +A +SD A + G I GP +L Sbjct: 189 RRIVREGRTVLLTTHYMVEAEELSDRVAII------SKGRIVAEGPPEDL 232 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 68.2 bits (165), Expect = 2e-13 Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 33/243 (13%) Query: 26 IETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNR-MNEVVADVRIE 84 +E RGL +G A+ ++ + +GP+G GK+TLLR + + VR+ Sbjct: 5 VEARGLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVC 64 Query: 85 GEVLF-------HGKNVYDPDVDPVLLRRRIGMVFQQPNPFPKSIYDNVAYGPRMYGIKD 137 G ++ G + P DP + RR G + Y V G + G+ Sbjct: 65 GYDVWGDGWREARGLIGFAPQ-DPPMARRMTG-----------AEYITVVGG--LLGLSP 110 Query: 138 KATLDEIVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPAS 197 + R +DVLG+ LSGGQ++ L IA +A PEV+++DEP S Sbjct: 111 G-----VARREARRVLEMLGFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGS 165 Query: 198 ALDPISTARIEELMQELARQYTIVIVTHNMQQAARVSDYTAFMYLHEDWGAGYIEEFGPT 257 LD + + +++ + T++ +H+ Q+A SD M+ G + +G Sbjct: 166 GLDVRARESLWASLRKAFKGRTVLFSSHDPQEAEAESDRVLIMH------RGRLAAWGKP 219 Query: 258 REL 260 REL Sbjct: 220 REL 222 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 67.8 bits (164), Expect = 3e-13 Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 21/215 (9%) Query: 23 EVIIETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVR 82 + ++E RG+ Y L ++L + + +GP+G GK+TL++ + R Sbjct: 2 DTVLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLAR-----R 56 Query: 83 IEGEVLFHGKNVYDPDVDPVLLRRRIGMVFQQPN-PFPKSIYDNVAYGPRMYGIKDKATL 141 G VL +G DP +P R +G+VF++PN P + + + + G Sbjct: 57 DGGRVLLNG---LDPWREP-RAREGVGVVFERPNLPSSMPVVEFLESAAAIIGSSPSR-- 110 Query: 142 DEIVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDP 201 V+ ++RAA L K+ LS G +QR IA + +P ++ DEP S LDP Sbjct: 111 ---VDWAIRAAGLEGHE----WKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDP 163 Query: 202 ISTARIEELMQELARQY--TIVIVTHNMQQAARVS 234 + + L+ L R++ ++++ +H + + RV+ Sbjct: 164 LERREVLRLLARLNREHGLSLLVSSHVIVELLRVA 198 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 65.9 bits (159), Expect = 1e-12 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 17/204 (8%) Query: 26 IETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIEG 85 + L+V Y L +NL + IGP+G GK+T L+ + + G Sbjct: 3 VRVEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPA-----RG 57 Query: 86 EVLFHGKNVYDPDVDPVLLRRRIGMVFQQPNP---FPKSIYDNVAYGPRMYGIKDKATLD 142 V G ++ P ++ R G V Q P+ P ++ + V R+ G+ Sbjct: 58 RVFLDG---FEATGRPEMVGRYAGYVPQNPSAPKLSPMTVREFVETSLRLRGV---TRAR 111 Query: 143 EIVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDPI 202 E E L + EV L LS G QR+ IAR IA P++++MDEP +++DP Sbjct: 112 ERAVEVLHTLGIRGEV---LESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPA 168 Query: 203 STARIEELMQELARQYTIVIVTHN 226 I ++ LAR+ +++ +H+ Sbjct: 169 GRMEIARIIAGLARERLVLMTSHD 192 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 63.9 bits (154), Expect = 4e-12 Identities = 50/204 (24%), Positives = 106/204 (51%), Gaps = 16/204 (7%) Query: 41 LYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIEGEVLFHGKNVYDPDVD 100 L ++L + I G +G GK+T LR + R GE G + + + Sbjct: 30 LRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLS-----RDSGEARVLGVDPWGGGFE 84 Query: 101 PVLLRRRIGMVFQQPNPFPKSI-YDNVAYGPRMY-GIKDKATLDEIVEESLRAAALWDEV 158 V + +G + + + + + +N+ + R+Y G +D ++E+VE ++ + L Sbjct: 85 RV--KGEVGYLPEDASVYERLTGMENILFYARLYSGWRD---VEELVENAVFYSGL---S 136 Query: 159 KDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTARIEELMQELARQ- 217 ++ L + A S G ++RL + T+ KP ++++DEP S +DPI++ RI+++++ L+R+ Sbjct: 137 REDLARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSREG 196 Query: 218 YTIVIVTHNMQQAARVSDYTAFMY 241 I++ TH++ A ++D ++ Sbjct: 197 RAILVTTHDLALAEEIADRVTIIH 220 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 63.2 bits (152), Expect = 7e-12 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 20/206 (9%) Query: 26 IETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIEG 85 + LS +G A ++ + + I +GP+G GK+TLL+ + + A G Sbjct: 5 VNASALSKRFGQRYAYRNVEFT-FTSGILGVLGPNGAGKTTLLKTILGLVKPSA-----G 58 Query: 86 EVLFHGKNVYDPDVDPVLLRRRIGMVFQQPN----PFPKSIYDNVAYGPRMYGIKDKATL 141 E+L G N P + +L RIG V + P P + + +A ++ + Sbjct: 59 EILVEGVNPRSPGFEKLL--PRIGYVPELPVVPLWTTPCILLETLARLEGYTSVEARVR- 115 Query: 142 DEIVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDP 201 E+L L E + +GK LS G ++R+ +A+ + E++++DEP S LDP Sbjct: 116 ---AREALEVVGLAGECETPIGK----LSKGARKRVLVAQAFIGERELLVLDEPYSGLDP 168 Query: 202 ISTARIEELMQELARQYTIVIVTHNM 227 R+ EL++ +AR+ VIV+ ++ Sbjct: 169 EWVYRVRELLRTVAREGATVIVSSHI 194 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 59.3 bits (142), Expect = 1e-10 Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 27/235 (11%) Query: 24 VIIETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRI 83 +I++ R + +G AL ++ + + IGP+G GK+TL FN ++ + R Sbjct: 3 IILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTL---FNIISGIYMPDR- 58 Query: 84 EGEVLFHGKNVYDPDVDPVLLRRRIGMV--FQQPNPFPK-SIYDNVAYGPRMYGIKDKAT 140 G V++ G ++ P R R G+ FQ P ++ +NV G + Sbjct: 59 -GRVIYKGVDITGW---PAYRRSRAGIARTFQIVRPLANLTVLNNVIVGALL-------R 107 Query: 141 LDEIVEESLRAAALWDEV-----KDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEP 195 ++I E RA D V +D+L K + +++RL +AR +A +PE++L+DE Sbjct: 108 TNDIREARERAMEAIDMVGLAGKEDILAKDLNLI---EKKRLELARALATQPELLLLDEI 164 Query: 196 ASALDPISTARIEELMQELA-RQYTIVIVTHNMQQAARVSDYTAFMYLHEDWGAG 249 A+ L P + + E++ R TI++V H M+ ++ ++ E G Sbjct: 165 AAGLRPREVDDLVYTLLEISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEG 219 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 58.2 bits (139), Expect = 2e-10 Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 18/169 (10%) Query: 53 ITAFIGPSGCGKSTLLRCFNRMNEVVADVRIEGEVLFHGKNVYDPDVDPVLLRRRIGMVF 112 IT GP+G GKST+LR + + + GEV GK PVL+ + + Sbjct: 31 ITLLAGPTGGGKSTILRVAAGLATRIYGGYLRGEVEARGK--------PVLVPQDYDLFI 82 Query: 113 QQPNPFPKSIYDNVAYGPRMYGIKDKATLDEIVEESLRAAALWDEVKDVLGKSALALSGG 172 P + Y A G + + +A + EE ++D+L + LS G Sbjct: 83 LSLTPREELEYCYEASGLPPWEARREAV--RLAEEL--------GIEDLLDRRVSKLSAG 132 Query: 173 QQQRLCIARTIAVKPEVILMDEPASALDPISTARIEELMQELARQYTIV 221 ++QR+ IA +A+ EV+LMDEP + DP+ + L++ L + +V Sbjct: 133 ERQRVAIASALALGAEVLLMDEPLAYQDPLGVESLIRLLRRLDVEGVVV 181 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 58.2 bits (139), Expect = 2e-10 Identities = 48/206 (23%), Positives = 102/206 (49%), Gaps = 10/206 (4%) Query: 26 IETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIEG 85 +E +GL+ G + L ++ + + A +GP+G GKS+L + M + +V +EG Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSL--GYVIMGREIYEV-VEG 59 Query: 86 EVLFHGKNVYDPDVDPVLLRRRIGMVFQQPNPFPKSIYDN--VAYGPRMYGIKD--KATL 141 ++L G+++ + + L+ I M Q P P + +A+ + G +D K Sbjct: 60 DILLDGESIKELPPEERALKG-IFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPAD 118 Query: 142 DEIVEESLRAAALWDEVKDVLGKSA-LALSGGQQQRLCIARTIAVKPEVILMDEPASALD 200 +IV+ A +++L + + SGG+++R + + + P+++++DEP S LD Sbjct: 119 PKIVKRMYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLD 178 Query: 201 PISTARIEELMQELARQ-YTIVIVTH 225 + E +++L ++++TH Sbjct: 179 IDGLKIVAEFIKQLRDSGRGVMLITH 204 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 55.8 bits (133), Expect = 1e-09 Identities = 55/238 (23%), Positives = 107/238 (44%), Gaps = 18/238 (7%) Query: 26 IETRGL-SVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRC-FNRMNEVVADVRI 83 + RG+ VY AL +++ + + A +G +G GK+TL+R + + + ++ + Sbjct: 13 VAMRGIVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYV 72 Query: 84 EGEVLFHGKNVYDPDVDPVLLRRRIGMVFQQPNPFPK-SIYDNVAYGPRMYGIKDKATLD 142 G + + +D +R I MV+QQ ++ +N+A G+ Sbjct: 73 WGRKV-SWRGPWDA------IRNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARR 125 Query: 143 EIVEESLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDPI 202 +E + R D L K+ L G +QR+ I + ++ +V+++DEP S L P+ Sbjct: 126 RTLETAERLGLEID-----LAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPL 180 Query: 203 STARIEELMQELARQ-YTIVIVTHNMQQAARVSDYTAFMYLHEDWGAGYIEEFGPTRE 259 ++ ++ L ++V +TH + + RV+D L + IE+ G T E Sbjct: 181 EAEKLFSTLRLLKDMGVSVVYITHKLGEVVRVADRVT--VLRRGRVSAVIEDVGRTSE 236 Score = 41.2 bits (95), Expect = 3e-05 Identities = 57/238 (23%), Positives = 100/238 (42%), Gaps = 43/238 (18%) Query: 18 PEGKE-EVIIETRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTL------LRC 70 P GK ++ RG+SV + +++L + + I G +G G+ L LR Sbjct: 254 PPGKVGRELLSVRGVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRR 313 Query: 71 FNRMNEVVADVRIEGEVLFH--GKNVYDPDVDPVLLRRRIGMVFQQPNPFPKSIYDNVAY 128 R + V RIEG + F+ G D VL S+ +N+A+ Sbjct: 314 PVRGSIEVQGRRIEGSLDFYRAGGGYIAGDRGKVLA-------------MDYSVAENIAF 360 Query: 129 GPRMYGIKDKATLDEIVEESLRAAALWDEVKDVLGKSALA----------LSGGQQQRLC 178 +Y K L LR + L D + ++ + L LSGG QQ++ Sbjct: 361 ---LYYTASKTLL-------LRRSRLEDLFRRLVERFRLVARSPWTPVGRLSGGNQQKVI 410 Query: 179 IARTIAVKPEVILMDEPASALDPISTARIEELMQELARQYT-IVIVTHNMQQAARVSD 235 + + ++++ P LD +T+ + L+ ELARQ I++V+ ++ + +SD Sbjct: 411 VGSEVLRGFKLLVAVNPTQGLDIATTSFVRNLLSELARQGAGILLVSTDLDEILELSD 468 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 53.9 bits (128), Expect = 4e-09 Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 18/183 (9%) Query: 41 LYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIEGEVLFHGKNVYDPDVD 100 L D+N+ + + A +G SG GK+TLLR I G+ L G Y PD Sbjct: 456 LKDVNITVNPGSVAAVVGASGAGKTTLLRM------------ILGKALGIGGEGYRPDSG 503 Query: 101 PVLLRRRIGMVFQQPNPFPKSIYDNVAYGPRMYGIKDKATLDEIVEESLRAAALWDEVKD 160 V + P S + D E+ L + L D + Sbjct: 504 VVKIPTNTKAAALLPGELEPSFGGETLLEHVASKLGDPGAAVEV----LSSVGLGDAI-- 557 Query: 161 VLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTARIEELMQELARQYTI 220 S LS GQ++R +A +A +P ++++DE + LDP++ RI + +LAR I Sbjct: 558 FFRASFGELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLTARRIARKLGKLARSKGI 617 Query: 221 VIV 223 ++ Sbjct: 618 TLI 620 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 53.9 bits (128), Expect = 4e-09 Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 49/204 (24%) Query: 41 LYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIEGEVL---------FHG 91 L ++ + + A +GP+G GK+TLLR + ++ R EV G Sbjct: 22 LRGVSFSLDPGSLVALLGPNGSGKTTLLRL---LAGIIKPSRGRVEVCGSPPGRVRRMLG 78 Query: 92 KNVYDPDVDPVLLRRRIGMVFQQPNPFPKSIYDNVAYGPRMYGIKDKATLDEIVEESLRA 151 P+VDP L + ++++ + + VA+G R Sbjct: 79 YAPASPEVDPRLKAVEVALLYRY------GVSEGVAWGRRD------------------- 113 Query: 152 AALWDEVKDVLGKSALA---------LSGGQQQRLCIARTIAVKPEVILMDEPASALDPI 202 W+EV LG+ + LS GQ++ + +A +A +P + L+DEP S LD Sbjct: 114 ---WEEVLAALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVS 170 Query: 203 STARIEELMQELARQYTIVIVTHN 226 + R+ +++ L + TIV TH+ Sbjct: 171 NMRRVTLVLRSLRGRATIVYTTHD 194 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 53.1 bits (126), Expect = 7e-09 Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 19/209 (9%) Query: 33 VYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIEGEVLFHGK 92 VY G AL + +TA +G +G GK+TLL+ V R +G +L G Sbjct: 13 VYPGGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMG----VVKPR-KGRILVDGY 67 Query: 93 NVYDPDVDPVLLRRRIGMVFQQPNPFPK-SIYDNVAY----GPRMYGIKDKATLDEIVEE 147 + P LR I M Q P +P Y+++A R G++ T+ + E Sbjct: 68 ELR-PKGPGDSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTM---LAE 123 Query: 148 SLRAAALWDEVKDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTARI 207 + A L + LG+ + ++QRL + + +A+ +L+DEP + L P AR+ Sbjct: 124 ASEALGLNIDPDRYLGEMGFS----ERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARM 179 Query: 208 EELMQELARQ-YTIVIVTHNMQQAARVSD 235 E LA +++VTH + +A +D Sbjct: 180 LEAAGRLAASGAAVLLVTHRIGEAMEHAD 208 Score = 46.2 bits (108), Expect = 9e-07 Identities = 50/202 (24%), Positives = 91/202 (45%), Gaps = 26/202 (12%) Query: 46 LPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVR--IEGEVLFHGKNVYDPDVDPVL 103 L + + + G +G G+ L EV+ +R +G +L G +V P L Sbjct: 275 LEVRQGEVVGVAGVAGNGQEELF-------EVIVGLRKPAKGRILIAGVDVTRA---PPL 324 Query: 104 LRRRIGMVFQQPNPFP------KSIYDNVA---YGPRMYGIKDKATLDEIVEESLRAAAL 154 RRR+G+ +SI N+A + R I D +++ EE +R Sbjct: 325 ARRRLGLGVIPEERLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMG- 383 Query: 155 WDEVKDVLGKSAL-ALSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTARIEELMQE 213 +K V + + LSGG QRL +AR + +KP +++ PA+ LD + E+M+ Sbjct: 384 ---IKAVSPRQMVDELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRM 440 Query: 214 LARQYTIVIVTHNMQQAARVSD 235 + + ++++ ++ RVS+ Sbjct: 441 SSERGGVLVIDEDLDFLLRVSN 462 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 52.4 bits (124), Expect = 1e-08 Identities = 67/264 (25%), Positives = 115/264 (43%), Gaps = 45/264 (17%) Query: 28 TRGLSVYYGYHMALYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIEGEV 87 T +++ +G AL ++++ + + I IGP+G GK++LL N + V R G V Sbjct: 4 TENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLL---NVITGVYKPQR--GRV 58 Query: 88 LFHGKNVYDPDVDPVLLRRRIGM----VFQQPNPFPK-SIYDNVAYGPRMYGIKDKATLD 142 F G+ D+ + +RI + FQ F ++ +N+ + T Sbjct: 59 YFKGR-----DITGLKPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPW------TRG 107 Query: 143 EIVEESLRA--AALWD--------EVKDVLG------KSALALSGGQQQRLCIARTIAVK 186 I+E++L A A W+ V D+L AL G Q+++ +A +A Sbjct: 108 SILEKALWAFRAKRWEVEARERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQN 167 Query: 187 PEVILMDEPASALDPISTARIEELMQELAR--QYTIVIVTHNMQQAARVSDYTAFMYLHE 244 PEV+LMDEP + L I + E + T+V++ H+M+ V D M Sbjct: 168 PEVVLMDEPMAGLSKEEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVM---- 223 Query: 245 DWGAGYIEEFGPTRELFLNPKKKR 268 D+G E GP E + + ++ Sbjct: 224 DYGKVIFE--GPPHEAVADERVRK 245 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 44.3 bits (103), Expect = 3e-06 Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 36/201 (17%) Query: 41 LYDINLPIYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIEGEVLFHGKNVYDPDVD 100 L D+ L I + +TA +G +G GK+TLL+ R+ + PD Sbjct: 7 LRDVTLSIPRG-VTAILGANGSGKTTLLKLAARLLK--------------------PDRG 45 Query: 101 PVLLRRRIGMVFQQPNPFPKSIYDNVAYG-PRMYGIKDKATLDEIVEESLRAAALWDEVK 159 V RR+G Q NP+ + VA R G + +A + LR A L + Sbjct: 46 SVEGPRRVGAALQ--NPYLGFLGPTVAEDLARTAGGRGEAL------KLLREAGL----E 93 Query: 160 DVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTARIEELMQELARQYT 219 +S LS G+ + L + I+ PE +++DEP S LD + L+ L Sbjct: 94 YASERSPYTLSMGEARILSVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLIARLG--VP 151 Query: 220 IVIVTHNMQQAARVSDYTAFM 240 +++ H++ AA V+ + + Sbjct: 152 VLVAGHDIDFAAAVAGWAVIL 172 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 42.7 bits (99), Expect = 1e-05 Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 39/221 (17%) Query: 48 IYKNRITAFIGPSGCGKSTLLRCFNRMNEVVADVRIEGEVLFHGKNV---YDPD-VDPVL 103 +Y + GP+G GK+T +R A +EG V + +++ Y P + P Sbjct: 380 LYGGEVIGVAGPNGIGKTTFVRTL-----AGALKPVEGAVYPYVEDLRVSYKPQYISPES 434 Query: 104 LR-RRIGMVFQQPNP--FPKSIYDNVAYGPRMYGIKDKATLDEIVEESLRAAALWDEVKD 160 L + V + NP + N+ RM LD+++E +R Sbjct: 435 LPDATVEQVLKAANPAILAPGSWLNLELVKRM-------RLDKLLERRVRT--------- 478 Query: 161 VLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTARIEELMQEL--ARQY 218 LSGG+ Q++ +A +A + +V L+DEP++ LD + ++ + R+ Sbjct: 479 --------LSGGELQKVAVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREA 530 Query: 219 TIVIVTHNMQQAARVSDYTAFMYLHEDWGAGYIEEFGPTRE 259 ++V H++ VSD + E G++++ P +E Sbjct: 531 AALVVEHDLMILDYVSD-RIMLVTGEPGVRGHVDDPRPVKE 570 Score = 42.0 bits (97), Expect = 2e-05 Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 24/225 (10%) Query: 46 LPIYKN-RITAFIGPSGCGKSTLLRCFNRMNEVVADV-RIEGEVLFHGKNVYDPDVDPVL 103 LPI + ++ +G +G GK+T LR E+ ++ R+EG +P+ D +L Sbjct: 100 LPIPREGQVVGLLGRNGTGKTTALRIL--AGELKPNLGRVEGG---------EPEWDEIL 148 Query: 104 LRRR---IGMVFQQPNPFPKSIYDNVAYG---PRMYGIKDKATLDEIVEESLRAAALWDE 157 R R + F++ + + Y PR + + L E + A L ++ Sbjct: 149 KRFRGSELQTYFRKLVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGV-ALELAEQ 207 Query: 158 V--KDVLGKSALALSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTARIEELMQELA 215 V V + LSGG+ Q++ I ++ V + DEP+S LD R+ L+ A Sbjct: 208 VGLDKVFDRDVRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAA 267 Query: 216 RQYT-IVIVTHNMQQAARVSDYTAFMYLHEDWGAGYIEEFGPTRE 259 R +++V H++ VSD +Y E G + + TRE Sbjct: 268 RPGAYVMVVEHDLAVLDYVSDLVHILY-GEPGAYGIVSKPYSTRE 311 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 293,078 Number of Sequences: 1700 Number of extensions: 13149 Number of successful extensions: 152 Number of sequences better than 1.0e-04: 40 Number of HSP's better than 0.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 47 length of query: 278 length of database: 492,079 effective HSP length: 76 effective length of query: 202 effective length of database: 362,879 effective search space: 73301558 effective search space used: 73301558 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718244|ref|YP_003873776.1| hypothetical protein STHERM_c05340 [Spirochaeta thermophila DSM 6192] (114 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,777 Number of Sequences: 1700 Number of extensions: 3270 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 114 length of database: 492,079 effective HSP length: 66 effective length of query: 48 effective length of database: 379,879 effective search space: 18234192 effective search space used: 18234192 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718245|ref|YP_003873777.1| hypothetical protein STHERM_c05350 [Spirochaeta thermophila DSM 6192] (639 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 673,615 Number of Sequences: 1700 Number of extensions: 31919 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 0 length of query: 639 length of database: 492,079 effective HSP length: 83 effective length of query: 556 effective length of database: 350,979 effective search space: 195144324 effective search space used: 195144324 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718246|ref|YP_003873778.1| phosphate regulon sensor protein PhoR [Spirochaeta thermophila DSM 6192] (463 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 378,746 Number of Sequences: 1700 Number of extensions: 16027 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 0 length of query: 463 length of database: 492,079 effective HSP length: 80 effective length of query: 383 effective length of database: 356,079 effective search space: 136378257 effective search space used: 136378257 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718247|ref|YP_003873779.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (226 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.142 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 242,058 Number of Sequences: 1700 Number of extensions: 10911 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 226 length of database: 492,079 effective HSP length: 74 effective length of query: 152 effective length of database: 366,279 effective search space: 55674408 effective search space used: 55674408 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718248|ref|YP_003873780.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (217 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600408|ref|NP_146922.1| phosphate transport system protein ... 49 1e-07 >gi|14600408|ref|NP_146922.1| phosphate transport system protein PhoU [Aeropyrum pernix K1] Length = 201 Score = 48.5 bits (114), Expect = 1e-07 Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 9/195 (4%) Query: 8 EITDLRNNIFSMGILVEETLHKAYRALKEQNTDLAQEVFEDEEEI-NRLQHTLEHRCAEI 66 ++ + +N+ M +V + + R+L+E + + E ED + L +E + Sbjct: 9 DLEAIYSNLDRMYNIVVKIVADTLRSLEEWSIN---EALEDHLYLAENLSAVVEEQATFF 65 Query: 67 LATEHPVAGDLREILTSFKIIANIERIGDHAVHFAKALMRL-RNREVLRDLSQFFSMAEE 125 +A P+ +L E + + ++ RI + + + R L+ Q AE Sbjct: 66 IAKYQPLGPELLEAKSLIRTSYDLYRIARYCREINRVIAYTSRGGRTLKPSQQVRKAAEI 125 Query: 126 GISMFHDALTAYIERDAEKAREVASRDSRIDEMHGQILQHLFRLIKEHPDQPEDFTSLLF 185 SM DA AY RD E R+V D+ ID+++ +L+ + ++ + D L Sbjct: 126 VASMVGDAYKAYRSRDNELRRKVEETDNMIDKIYDAMLERIGKVESLSQTEAVD----LL 181 Query: 186 LNRFLERLGDHVTNI 200 + R LER+ DH I Sbjct: 182 IVRHLERIADHAVYI 196 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 186,975 Number of Sequences: 1700 Number of extensions: 6940 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 2 length of query: 217 length of database: 492,079 effective HSP length: 73 effective length of query: 144 effective length of database: 367,979 effective search space: 52988976 effective search space used: 52988976 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718249|ref|YP_003873781.1| hypothetical protein STHERM_c05400 [Spirochaeta thermophila DSM 6192] (291 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 298,166 Number of Sequences: 1700 Number of extensions: 12661 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 291 length of database: 492,079 effective HSP length: 76 effective length of query: 215 effective length of database: 362,879 effective search space: 78018985 effective search space used: 78018985 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718250|ref|YP_003873782.1| UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase [Spirochaeta thermophila DSM 6192] (371 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 377,243 Number of Sequences: 1700 Number of extensions: 15388 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 371 length of database: 492,079 effective HSP length: 78 effective length of query: 293 effective length of database: 359,479 effective search space: 105327347 effective search space used: 105327347 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718251|ref|YP_003873783.1| hypothetical protein STHERM_c05410 [Spirochaeta thermophila DSM 6192] (176 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.141 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,966 Number of Sequences: 1700 Number of extensions: 2640 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 176 length of database: 492,079 effective HSP length: 71 effective length of query: 105 effective length of database: 371,379 effective search space: 38994795 effective search space used: 38994795 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718252|ref|YP_003873784.1| DNA polymerase III domain-containing protein [Spirochaeta thermophila DSM 6192] (390 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 383,426 Number of Sequences: 1700 Number of extensions: 16056 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 0 length of query: 390 length of database: 492,079 effective HSP length: 79 effective length of query: 311 effective length of database: 357,779 effective search space: 111269269 effective search space used: 111269269 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718253|ref|YP_003873785.1| sensory transduction histidine kinase [Spirochaeta thermophila DSM 6192] (388 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 358,007 Number of Sequences: 1700 Number of extensions: 15069 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 388 length of database: 492,079 effective HSP length: 79 effective length of query: 309 effective length of database: 357,779 effective search space: 110553711 effective search space used: 110553711 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718254|ref|YP_003873786.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (453 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 450,852 Number of Sequences: 1700 Number of extensions: 20644 Number of successful extensions: 89 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89 Number of HSP's gapped (non-prelim): 0 length of query: 453 length of database: 492,079 effective HSP length: 80 effective length of query: 373 effective length of database: 356,079 effective search space: 132817467 effective search space used: 132817467 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718255|ref|YP_003873787.1| hypothetical protein STHERM_c05450 [Spirochaeta thermophila DSM 6192] (133 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 151,780 Number of Sequences: 1700 Number of extensions: 6765 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 133 length of database: 492,079 effective HSP length: 68 effective length of query: 65 effective length of database: 376,479 effective search space: 24471135 effective search space used: 24471135 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718256|ref|YP_003873788.1| aspartokinase 3 [Spirochaeta thermophila DSM 6192] (447 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431339|ref|NP_147738.2| aspartate kinase [Aeropyrum pernix... 150 8e-38 >gi|118431339|ref|NP_147738.2| aspartate kinase [Aeropyrum pernix K1] Length = 454 Score = 150 bits (378), Expect = 8e-38 Identities = 129/459 (28%), Positives = 217/459 (47%), Gaps = 31/459 (6%) Query: 1 MVVMKFGGTSVQDAERM----DRVLSIAEEELNEGVVLVASATAKTTDRLIQLTQASARG 56 +VV+KFGG+ + + VL + E L V+V SA TD L+ + G Sbjct: 8 LVVVKFGGSVLNGSPGFLAAGRLVLGLLESGLEP--VVVVSAVKGVTDALLSSFERRDPG 65 Query: 57 DEESVQSILNLIKTHHFQIAHDFLEGEYLEKAVARLETLFAELGTIVKGMTLLKEVSPRT 116 + + + IA + ++V + AE+ ++ +L + +PR Sbjct: 66 -------VGGAVGKTYLSIAREL---GLPPESVRDVSLASAEVSKLLWAAEVLGQWTPRV 115 Query: 117 LDAVVAFGEILSTTLLYHRALQRGLKARLLDSRNY-IITDDSFGNATPDIRETYRRLSSG 175 D VV++GE LS L+ + G++AR L I+TD FG+ATP T + Sbjct: 116 RDLVVSYGERLSAALMAGLLRRLGVEARWLGGGEAGIVTDGEFGDATPLYGYTEGVIRER 175 Query: 176 VK--VGAGDLVIMQGFIASTPDGTTSTLGRGGSDYSAAIVGAGLHASRIEIWTDVHGVMT 233 ++ + G + ++ GF +T +G T+ LGRGGSD +A ++ + L A R+ ++TDV G+++ Sbjct: 176 LEPMLEEGVVPVVAGFTGATREGDTTLLGRGGSDLTATLLASALGAGRVVLYTDVPGILS 235 Query: 234 ADPRIVPEAQPIPQLSYEEAAELAYFGAKVVHPSTIQPAVEKNIPVLVKNTMDPNGPGTT 293 DPR+V E + + +SYEEA E+A G + HP T +P + + V V D G T Sbjct: 236 GDPRVVGEPRRVGYMSYEEAWEVARLGLRKFHPRTFEPLIAGGLGVEVV-VSDLRGRSTR 294 Query: 294 ITHRSPYKGLKAIATKRNITLITIQSYRMLNAYGFLSRIFDVFAEYRTPVDLI--ATSEV 351 I LK ++ R + + ++ M GFLSR+ + A + I SE Sbjct: 295 IGPGRGGPPLKVVSLSRGVARLVVRGPSMAGKRGFLSRLAGLLAGRGVNILAIRQPPSET 354 Query: 352 SVSMTIDNKANLHPITREL---SKIGKVVVEEEKA--IISLVGEDVWKTHETILNAFSAL 406 ++ + +D + +L EL S V +E E+ ++S+VG W E + A SA Sbjct: 355 AIELVVDER-DLPAAVEELGARSGAAGVRLEVERGFDVVSIVG---WGAVEALPEALSAA 410 Query: 407 QGIPVRMITMGSSHINLSLVVADGDGEESVRRLHRAFFE 445 + R+++ G ++S++ E R LHR E Sbjct: 411 EKTGGRLLSTGELSPSISILARGRTSPELARLLHRRVVE 449 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 427,779 Number of Sequences: 1700 Number of extensions: 18754 Number of successful extensions: 87 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83 Number of HSP's gapped (non-prelim): 1 length of query: 447 length of database: 492,079 effective HSP length: 80 effective length of query: 367 effective length of database: 356,079 effective search space: 130680993 effective search space used: 130680993 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718257|ref|YP_003873789.1| hypothetical protein STHERM_c05470 [Spirochaeta thermophila DSM 6192] (812 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 843,827 Number of Sequences: 1700 Number of extensions: 39311 Number of successful extensions: 151 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 151 Number of HSP's gapped (non-prelim): 0 length of query: 812 length of database: 492,079 effective HSP length: 84 effective length of query: 728 effective length of database: 349,279 effective search space: 254275112 effective search space used: 254275112 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718258|ref|YP_003873790.1| hypothetical protein STHERM_c05480 [Spirochaeta thermophila DSM 6192] (89 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.312 0.134 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,273 Number of Sequences: 1700 Number of extensions: 2740 Number of successful extensions: 7 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 89 length of database: 492,079 effective HSP length: 58 effective length of query: 31 effective length of database: 393,479 effective search space: 12197849 effective search space used: 12197849 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718259|ref|YP_003873791.1| GTP-binding protein [Spirochaeta thermophila DSM 6192] (290 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601780|ref|NP_148321.1| GTP-binding protein HflX [Aeropyrum... 44 5e-06 >gi|14601780|ref|NP_148321.1| GTP-binding protein HflX [Aeropyrum pernix K1] Length = 372 Score = 43.9 bits (102), Expect = 5e-06 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 11/163 (6%) Query: 7 AIVGRPSSGKSTLLNTLCGRKVAITSPVPQTTRNRIRGIVTEERGQIVFIDTPGYHQSEK 66 +IVG S+GK++L N L G + T + + I ++ DT G+ + Sbjct: 187 SIVGYASAGKTSLFNLLTGEDRPVGPEYFTTLQPKHSRITWGGVEGVLAADTVGFIRDVP 246 Query: 67 KFNLFLKEQVIEALKEVDEILYLVDSTR---SIGEEEHELIELVKQAG---KPVVIALNK 120 + + +K D I++++D+ I E+ H I+ + + G P+VIA NK Sbjct: 247 PEIVEAFHATLAEVKHSDAIVFVIDAAEPPSDIEEKLHAGIDTLARIGALSAPMVIAANK 306 Query: 121 IDIPEHHAEG-MVPLLKAHFP----SAPIVKISAYTGEGLEDL 158 ID + G + L++ S P++ ISA TG G++ L Sbjct: 307 IDALQPPEIGERIALIEREASILPHSPPVIPISAKTGYGVDRL 349 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 284,335 Number of Sequences: 1700 Number of extensions: 12593 Number of successful extensions: 96 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 95 Number of HSP's gapped (non-prelim): 1 length of query: 290 length of database: 492,079 effective HSP length: 76 effective length of query: 214 effective length of database: 362,879 effective search space: 77656106 effective search space used: 77656106 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718260|ref|YP_003873792.1| hypothetical protein STHERM_c05540 [Spirochaeta thermophila DSM 6192] (194 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 170,391 Number of Sequences: 1700 Number of extensions: 6363 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 194 length of database: 492,079 effective HSP length: 72 effective length of query: 122 effective length of database: 369,679 effective search space: 45100838 effective search space used: 45100838 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718261|ref|YP_003873793.1| endonuclease/exonuclease/phosphatase family protein [Spirochaeta thermophila DSM 6192] (311 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 351,947 Number of Sequences: 1700 Number of extensions: 17318 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 0 length of query: 311 length of database: 492,079 effective HSP length: 77 effective length of query: 234 effective length of database: 361,179 effective search space: 84515886 effective search space used: 84515886 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718262|ref|YP_003873794.1| hypothetical protein STHERM_c05560 [Spirochaeta thermophila DSM 6192] (66 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.131 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,466 Number of Sequences: 1700 Number of extensions: 1848 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 66 length of database: 492,079 effective HSP length: 37 effective length of query: 29 effective length of database: 429,179 effective search space: 12446191 effective search space used: 12446191 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718263|ref|YP_003873795.1| xylose isomerase domain-containing protein [Spirochaeta thermophila DSM 6192] (276 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 294,354 Number of Sequences: 1700 Number of extensions: 12394 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 276 length of database: 492,079 effective HSP length: 76 effective length of query: 200 effective length of database: 362,879 effective search space: 72575800 effective search space used: 72575800 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718264|ref|YP_003873796.1| hypothetical protein STHERM_c05580 [Spirochaeta thermophila DSM 6192] (93 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.333 0.146 0.465 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,437 Number of Sequences: 1700 Number of extensions: 2584 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 93 length of database: 492,079 effective HSP length: 61 effective length of query: 32 effective length of database: 388,379 effective search space: 12428128 effective search space used: 12428128 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718265|ref|YP_003873797.1| 2-hydroxyacid dehydrogenase [Spirochaeta thermophila DSM 6192] (351 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431608|ref|NP_148197.2| glyoxylate reductase [Aeropyrum pe... 157 3e-40 gi|118431906|ref|NP_148658.2| glyoxylate reductase [Aeropyrum pe... 105 1e-24 gi|118431387|ref|NP_147833.2| glyoxylate reductase [Aeropyrum pe... 65 2e-12 >gi|118431608|ref|NP_148197.2| glyoxylate reductase [Aeropyrum pernix K1] Length = 335 Score = 157 bits (398), Expect = 3e-40 Identities = 103/264 (39%), Positives = 141/264 (53%), Gaps = 24/264 (9%) Query: 73 VKLIALRCAGYNNIDLPSVYGK-IHVVRVPAYSPHAVAEHTVALLLALNRKVHRA----- 126 ++++A G++NID+ I+V P A AE T AL+LA R+V A Sbjct: 69 LRIVAQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVR 128 Query: 127 ---YWRTREFNFSLTGLMGFDLHGKTAGIIGTGQIGRLVAQILGDGFGMRILLHDPYPAG 183 +WR R + ++G +L GKT GI+G G+IG VA+I G FGMRI+ H Sbjct: 129 WGEWWRLRT-GWHPMMMLGVELRGKTLGILGMGRIGSRVAEI-GKAFGMRIIYHSRSRKR 186 Query: 184 EWAASHGFSYVPLETLYRESDVISLHCPLTPQTIHLINDESLSLMKKGVFIVNTGRGKLI 243 E G Y LE L RESD++S+H PLT +T HLI + L LMKK +VNTGRG ++ Sbjct: 187 EIEKELGAEYRSLEDLLRESDILSIHLPLTDETRHLIGESELKLMKKTAILVNTGRGAIV 246 Query: 244 DTKALIQALKRGHIGAAGLDVYEEETEYFFEDHSDTHIQDDVLARLLTFPNVLVTSHQAF 303 DT AL++AL+ G I AA LDV+EEE +H L F NV++ H A Sbjct: 247 DTGALVKALREGWIAAAALDVFEEEP--LNPNHP-----------LTAFKNVVLAPHAAS 293 Query: 304 FTREALTNIAETTLKNIDDFFSGR 327 TRE +A +N+ F G+ Sbjct: 294 ATRETRLRMAMMAAENLVAFAQGK 317 >gi|118431906|ref|NP_148658.2| glyoxylate reductase [Aeropyrum pernix K1] Length = 333 Score = 105 bits (263), Expect = 1e-24 Identities = 80/252 (31%), Positives = 127/252 (50%), Gaps = 13/252 (5%) Query: 73 VKLIALRCAGYNNIDLPSVYGK-IHVVRVPAYSPHAVAEHTVALLLALNRKVHRAYWRTR 131 V+L+ GY++ID+ + + V + +VAE+T+ LAL +++ A+ T Sbjct: 74 VRLVQQPSTGYDHIDVEACARHGVPVANAGGANAVSVAEYTIMAALALLKRLLYAHRETV 133 Query: 132 EFNFSLTGLMG---FDLHGKTAGIIGTGQIGRLVAQILGDGFGMRILLHDPYPAGEWAAS 188 + LM FDL GKT GIIG G+IGR VA+ L F +R + D + Sbjct: 134 AGGWPQWRLMEMGTFDLQGKTWGIIGLGRIGREVAKRLRP-FEVRTVYFDKVRMEDAERE 192 Query: 189 HGFSYVPLETLYRESDVISLHCPLTPQTIHLINDESLSLMKKGVFIVNTGRGKLIDTKAL 248 G Y L L RESDV+S+H PLT +T +I + L +MK ++N RG+++D +AL Sbjct: 193 LGVEYRSLSRLLRESDVVSIHVPLTSETRGMIGEGELRMMKPTAVLINPSRGEIVDEEAL 252 Query: 249 IQALKRGHIGAAGLDVYEEETEYFFEDHSDTHIQDDVLARLLTFPNVLVTSHQAFFTREA 308 +A++ I A +DVY E DH + N+++T H A +A Sbjct: 253 ARAVRERWIAGAAVDVYSREPPP--PDHPLIRAAGEADV------NLILTPHIAGANTDA 304 Query: 309 LTNIAETTLKNI 320 + I + +++NI Sbjct: 305 RSRIIQFSIENI 316 >gi|118431387|ref|NP_147833.2| glyoxylate reductase [Aeropyrum pernix K1] Length = 347 Score = 65.5 bits (158), Expect = 2e-12 Identities = 79/294 (26%), Positives = 125/294 (42%), Gaps = 24/294 (8%) Query: 54 LFVNDYVTPKVAEVFASAG-VKLIALRCAGYNNIDLPSVYGK-IHVVRVPAYSPHAVAEH 111 +F+N + TP A + G ++LI L G++++D+ + G + V P AVAE+ Sbjct: 48 VFINAF-TPVDAGLLRDKGCLELIVLTSTGFDHVDVEAAAGVGVCVANQPEVITEAVAEY 106 Query: 112 TVALLLALNRKVHRAYWRTREFNFS--LTGLMGFDLHGKTAGIIGTGQIGRLVA-QILGD 168 VA +LA R V + T + + L GF + G++ G++G G+IG+ VA ++ Sbjct: 107 VVAAVLAALRGVVAGHMYTPRWAREGWPSHLAGFLVRGRSVGLLGAGRIGQSVAFKLAAL 166 Query: 169 GFGMRILLHDPYPAGEWAASHGFSYVPLETLYRESDVISLHCPLTPQTIHLINDESLSLM 228 G G G A P E L+ S ++ PLT +T L+ L L+ Sbjct: 167 GAGPFYYYSRSRKPGLEAVLGAKRLEPRE-LFSRSMILVNSLPLTGETRGLVTAGLLRLL 225 Query: 229 KKGVFIVNTGRGKLIDTKALIQALKRGHIGAAGLDVYEEETEYFFED-HSDTHI-QDDVL 286 +G VN GRG + GA E E YF D H + + Sbjct: 226 PRGAVYVNVGRGGTEEP------------GAVEAVASEREDLYFVLDVHPEEPLPPSSGR 273 Query: 287 ARLLTFPNVLVTSHQAFFTREALTNIAETTLKNIDDFFSGRSLENEI---CYQC 337 RL P V++T H A +RE++T D+ + N + C +C Sbjct: 274 MRLHGNPRVVMTPHIAGSSRESMTATRLLAAMQARDYLERGCVWNPVNGACREC 327 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 331,319 Number of Sequences: 1700 Number of extensions: 14297 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 3 length of query: 351 length of database: 492,079 effective HSP length: 78 effective length of query: 273 effective length of database: 359,479 effective search space: 98137767 effective search space used: 98137767 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718266|ref|YP_003873798.1| mannonate dehydratase [Spirochaeta thermophila DSM 6192] (381 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 430,026 Number of Sequences: 1700 Number of extensions: 20651 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 0 length of query: 381 length of database: 492,079 effective HSP length: 78 effective length of query: 303 effective length of database: 359,479 effective search space: 108922137 effective search space used: 108922137 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718267|ref|YP_003873799.1| hypothetical protein STHERM_c05610 [Spirochaeta thermophila DSM 6192] (387 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 421,308 Number of Sequences: 1700 Number of extensions: 19832 Number of successful extensions: 74 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74 Number of HSP's gapped (non-prelim): 0 length of query: 387 length of database: 492,079 effective HSP length: 79 effective length of query: 308 effective length of database: 357,779 effective search space: 110195932 effective search space used: 110195932 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718268|ref|YP_003873800.1| hypothetical protein STHERM_c05620 [Spirochaeta thermophila DSM 6192] (121 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.146 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106,773 Number of Sequences: 1700 Number of extensions: 3613 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 121 length of database: 492,079 effective HSP length: 67 effective length of query: 54 effective length of database: 378,179 effective search space: 20421666 effective search space used: 20421666 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718269|ref|YP_003873801.1| two-component regulatory system response regulator [Spirochaeta thermophila DSM 6192] (431 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 365,134 Number of Sequences: 1700 Number of extensions: 14157 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 431 length of database: 492,079 effective HSP length: 79 effective length of query: 352 effective length of database: 357,779 effective search space: 125938208 effective search space used: 125938208 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718270|ref|YP_003873802.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192] (1272 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,189,178 Number of Sequences: 1700 Number of extensions: 52071 Number of successful extensions: 154 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 154 Number of HSP's gapped (non-prelim): 0 length of query: 1272 length of database: 492,079 effective HSP length: 88 effective length of query: 1184 effective length of database: 342,479 effective search space: 405495136 effective search space used: 405495136 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718271|ref|YP_003873803.1| biosynthetic arginine decarboxylase (ADC) [Spirochaeta thermophila DSM 6192] (637 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 642,067 Number of Sequences: 1700 Number of extensions: 29046 Number of successful extensions: 99 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99 Number of HSP's gapped (non-prelim): 0 length of query: 637 length of database: 492,079 effective HSP length: 83 effective length of query: 554 effective length of database: 350,979 effective search space: 194442366 effective search space used: 194442366 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718272|ref|YP_003873804.1| chromate transport protein [Spirochaeta thermophila DSM 6192] (226 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.139 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 156,414 Number of Sequences: 1700 Number of extensions: 4948 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 226 length of database: 492,079 effective HSP length: 74 effective length of query: 152 effective length of database: 366,279 effective search space: 55674408 effective search space used: 55674408 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718273|ref|YP_003873805.1| transporter [Spirochaeta thermophila DSM 6192] (195 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 193,413 Number of Sequences: 1700 Number of extensions: 7892 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 195 length of database: 492,079 effective HSP length: 72 effective length of query: 123 effective length of database: 369,679 effective search space: 45470517 effective search space used: 45470517 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718274|ref|YP_003873806.1| hypothetical protein STHERM_c05680 [Spirochaeta thermophila DSM 6192] (28 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,730 Number of Sequences: 1700 Number of extensions: 312 Number of successful extensions: 0 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 28 length of database: 492,079 effective HSP length: 3 effective length of query: 25 effective length of database: 486,979 effective search space: 12174475 effective search space used: 12174475 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718275|ref|YP_003873807.1| hypothetical protein STHERM_c05690 [Spirochaeta thermophila DSM 6192] (145 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.143 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 157,561 Number of Sequences: 1700 Number of extensions: 6838 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 0 length of query: 145 length of database: 492,079 effective HSP length: 69 effective length of query: 76 effective length of database: 374,779 effective search space: 28483204 effective search space used: 28483204 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718276|ref|YP_003873808.1| metal-sulfur cluster biosynthetic enzyme [Spirochaeta thermophila DSM 6192] (126 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431673|ref|NP_148302.2| hypothetical protein APE_1979.1 [A... 61 1e-11 >gi|118431673|ref|NP_148302.2| hypothetical protein APE_1979.1 [Aeropyrum pernix K1] Length = 138 Score = 60.8 bits (146), Expect = 1e-11 Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 11/95 (11%) Query: 33 VYEALSNVYDPELGLPITDLGMVYRVDV----FPDRIELDFTLTYPGCP----LGEVIEK 84 + EAL VYDPE+ + + DLG++Y V V RI++ +LT GCP L +E Sbjct: 22 IVEALKEVYDPEIPVNVYDLGLIYEVRVEGPREKPRIKVKMSLTAIGCPVSVALPAYVED 81 Query: 85 AIRAEVGKVAHTDNLVVRLVWDPPWTPDFMSEAAR 119 AIR V +++ V +V+DPPWTP+ ++ R Sbjct: 82 AIRE---AVPEAEDVEVEVVFDPPWTPERVTPEGR 113 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 144,435 Number of Sequences: 1700 Number of extensions: 6329 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 1 length of query: 126 length of database: 492,079 effective HSP length: 67 effective length of query: 59 effective length of database: 378,179 effective search space: 22312561 effective search space used: 22312561 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718277|ref|YP_003873809.1| transporter [Spirochaeta thermophila DSM 6192] (258 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 218 9e-59 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 94 3e-21 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 89 1e-19 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 74 3e-15 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 73 8e-15 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 72 1e-14 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 72 2e-14 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 72 2e-14 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 71 2e-14 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 68 2e-13 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 68 2e-13 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 67 3e-13 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 67 3e-13 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 67 3e-13 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 65 1e-12 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 65 2e-12 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 65 2e-12 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 65 2e-12 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 65 2e-12 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 64 4e-12 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 64 4e-12 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 62 1e-11 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 62 1e-11 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 62 2e-11 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 62 2e-11 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 61 2e-11 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 61 2e-11 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 60 4e-11 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 60 5e-11 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 59 9e-11 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 59 2e-10 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 58 3e-10 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 55 2e-09 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 54 5e-09 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 51 3e-08 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 48 3e-07 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 47 6e-07 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 43 7e-06 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 41 3e-05 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 218 bits (556), Expect = 9e-59 Identities = 116/243 (47%), Positives = 154/243 (63%), Gaps = 4/243 (1%) Query: 4 LRIEGLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRIL 63 L ++GL A+I K +L VD L+ GEVHA+MGPNGSGKS+L +VIMG Y V G IL Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 64 LDGEDVLELPPEERAVRGLFLGFQYPAEVSGLTTGK----FVKRVLEKHPARNMPVTQMI 119 LDGE + ELPPEERA++G+F+ Q P ++ G+ FV + L +++ Sbjct: 63 LDGESIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKIV 122 Query: 120 KELKEALTRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDAL 179 K + E T++GL +E +NR +N GFSGGEKKR E++Q ++ P+ ILDE DSGLDID L Sbjct: 123 KRMYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGL 182 Query: 180 KDVAEGINSLRGPEFCAFVITHYQRILEHVHPDFVHIMYRGRILTSGGRDLVETLEAKGY 239 K VAE I LR +ITHY R+L V PD V ++YRG +L GG +L +E KGY Sbjct: 183 KIVAEFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGSVLARGGAELARQVEEKGY 242 Query: 240 EWL 242 L Sbjct: 243 AQL 245 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 94.0 bits (232), Expect = 3e-21 Identities = 75/240 (31%), Positives = 113/240 (47%), Gaps = 17/240 (7%) Query: 4 LRIEGLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRIL 63 LR+E L G L V+L + G+V L+GPNGSGK+TL +VI G Y GGR+L Sbjct: 7 LRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGF--YKPDGGRVL 64 Query: 64 LDGEDVLELPPEERAVRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPARNMPVTQMIKEL- 122 G D+ + P E + GL FQ P + LT + V + P N+ + + + L Sbjct: 65 FKGRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADS-PGENVYLAGLARRLW 123 Query: 123 ----KEALTR-------MGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEID 171 K A R +GL + RS SGG+ K +EI + +M I+DE Sbjct: 124 LGFEKRAAARAFEILGWVGLDHMWDRRS--GELSGGQMKLLEIARAIMKGAEMIIMDEPA 181 Query: 172 SGLDIDALKDVAEGINSLRGPEFCAFVITHYQRILEHVHPDFVHIMYRGRILTSGGRDLV 231 +G++ + E I L + F+I ++ L + D V+ M G+++ SG D V Sbjct: 182 AGVNPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEV 241 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 88.6 bits (218), Expect = 1e-19 Identities = 72/224 (32%), Positives = 111/224 (49%), Gaps = 13/224 (5%) Query: 19 LQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMG--HPSYTVTGGRILLDGEDVLELPPEE 76 + GV LR GEV + G +GSGKSTLA I+G P + GGRI++DG DV + E Sbjct: 25 VDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTSMSEAE 84 Query: 77 --RAVRGLFLGFQYPAEVSGL----TTGKFVKRVLEKHPARNMPVTQMIKELKEALTRMG 130 R VR + + ++ L T G+ ++ VL+ H R + + + + E L +G Sbjct: 85 LRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIH--RGVGRHEARQRVYELLESVG 142 Query: 131 LSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKDVAEGINSLR 190 L + +R +E SGG+K+R+ I L L P I DE + LD+ + + L Sbjct: 143 LHRSIADRYPHE-LSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLKKLA 201 Query: 191 GPEFCAFV-ITHYQRILEHVHPDFVHIMYRGRILTSGGRDLVET 233 + + + ITH ++ + + V IMY G+I G D V T Sbjct: 202 WEKNLSIILITHDLSVIAEL-AETVMIMYGGKIAEYGPSDAVFT 244 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 74.3 bits (181), Expect = 3e-15 Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 8/211 (3%) Query: 19 LQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRILLDGEDVLELPPE--E 76 + V + + G+ L+G +GSGK+T VI+ TGGRI DG DV++L + Sbjct: 52 VDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEE--PTGGRIFFDGIDVMKLRGRGLK 109 Query: 77 RAVRGLFLGFQYPAEVSGLTTGKFVKRVL-EKHPARNMPVTQMIKELKEALTRMGLSQEF 135 R + FQ P L K + ++ E + V + + + L ++GL++ Sbjct: 110 EFRRRAQIIFQDP--YGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQVGLNETH 167 Query: 136 INRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKDVAEGINSLRGPEFC 195 + R +E FSGG+++R+ I ++L L+P F +LDE S LD+ + + L+ Sbjct: 168 LYRYPHE-FSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSL 226 Query: 196 AFVITHYQRILEHVHPDFVHIMYRGRILTSG 226 ++ + + D++ +MY G+I+ G Sbjct: 227 TYLFISHDLGVVRYMSDYIAVMYLGKIVEFG 257 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 72.8 bits (177), Expect = 8e-15 Identities = 70/220 (31%), Positives = 109/220 (49%), Gaps = 11/220 (5%) Query: 8 GLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRILLDGE 67 G+ ++G+P+L+GV L ++ GE+H L G NG+GK+T V++G S R+L G Sbjct: 19 GVAKSVKGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVL--GV 76 Query: 68 DVLELPPEERAVRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPARNMPVTQMIKELKE-AL 126 D E V+G A V TG ++ +L AR + ++EL E A+ Sbjct: 77 DPWGGGFER--VKGEVGYLPEDASVYERLTG--MENIL--FYARLYSGWRDVEELVENAV 130 Query: 127 TRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKDVAEGI 186 GLS+E + R G+S G K+R+ + LM +PR +LDE SG+D A + + + Sbjct: 131 FYSGLSREDLARRAG-GYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKIL 189 Query: 187 NSLRGPEFCAFVITHYQRILEHVHPDFVHIMYRGRILTSG 226 L V TH + E + D V I++ G + SG Sbjct: 190 RGLSREGRAILVTTHDLALAEEI-ADRVTIIHGGSTVASG 228 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 72.4 bits (176), Expect = 1e-14 Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 11/192 (5%) Query: 15 GKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRILLDGEDVLELPP 74 G L+GV +R GE L+GPNG+GK+TL ++I G Y GR++ G D+ P Sbjct: 16 GIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISG--IYMPDRGRVIYKGVDITGWPA 73 Query: 75 EERAVRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPARNMPVTQMIKELKEALTRMGLS-- 132 R+ G+ FQ ++ LT + V+ R + + + EA+ +GL+ Sbjct: 74 YRRSRAGIARTFQIVRPLANLTV---LNNVIVGALLRTNDIREARERAMEAIDMVGLAGK 130 Query: 133 QEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKDVAEGINSLRGP 192 ++ + + LN EKKR+E+ + L +P +LDEI +GL + D+ + + Sbjct: 131 EDILAKDLNL----IEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLEISKR 186 Query: 193 EFCAFVITHYQR 204 ++ H R Sbjct: 187 GITIIMVEHVMR 198 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 71.6 bits (174), Expect = 2e-14 Identities = 53/226 (23%), Positives = 105/226 (46%), Gaps = 10/226 (4%) Query: 1 MAELRIEGLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGG 60 MA +R+EG+ L+G+DL ++ GE L+GP+G GK+T ++ G G Sbjct: 1 MAGVRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAG--LERPDAG 58 Query: 61 RILLDGEDVLELPPEERAVRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPARNMPVTQMIK 120 R+ DG DV LPP++R V +F + + F ++ + +P ++++ Sbjct: 59 RVYFDGRDVTGLPPKDRNVAMVFQSYALWPHMRVFDNIAFPLKI------KKLPRDEIVR 112 Query: 121 ELKEALTRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALK 180 ++ A + + ++R ++ SGG+++R+ + + ++ P ++DE S LD Sbjct: 113 RVRWAAELLEI-DHLLDRYPHQ-LSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRI 170 Query: 181 DVAEGINSLRGPEFCAFVITHYQRILEHVHPDFVHIMYRGRILTSG 226 + I L+ + + ++ V D + +M G I G Sbjct: 171 KMRSEIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVG 216 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 71.6 bits (174), Expect = 2e-14 Identities = 64/230 (27%), Positives = 113/230 (49%), Gaps = 14/230 (6%) Query: 1 MAELRIEGLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMG--HPSYTVT 58 MAE+R+EG+ + VDL ++ GE L+GP+G GK+T +I G +P Sbjct: 1 MAEIRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPD---- 56 Query: 59 GGRILLDGEDVLELPPEERAVRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPARNMPVTQ- 117 GRIL+DGEDV P++R V +F + +S F + K M +T+ Sbjct: 57 EGRILIDGEDVTFKDPKDRNVAMVFQNYALYPHMSVFDNIAFTLHLRRK----EMGLTKD 112 Query: 118 MIKELKEALTRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLD-I 176 I+ + ++ ++ ++R + SGG+++R+ + + L+ RP+ ++DE S LD + Sbjct: 113 DIRRRVIEVAKLLRIEDLLDRKPGQ-LSGGQQQRVALARALVRRPKVWLMDEPLSNLDAL 171 Query: 177 DALKDVAEGINSLRGPEFCAFVITHYQRILEHVHPDFVHIMYRGRILTSG 226 L AE + + +TH Q + D + +M +GR++ G Sbjct: 172 LRLAMRAELKKLQKDLKITTVYVTHDQAEAMSM-ADRIAVMNKGRVVQVG 220 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 71.2 bits (173), Expect = 2e-14 Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 11/215 (5%) Query: 18 ILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSY---TVTGGRILLDGEDVLELPP 74 +++ + L + G + L+GPNG+GK+TL + G Y VT G I L+GED+ P Sbjct: 20 VIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNREP 79 Query: 75 EERAVRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPARNMPVTQMIKELKEALTRMGLSQE 134 +E A RG+ + LTT + + V A + ++ R+G Sbjct: 80 DEIARRGVIYVMEGRRIFKELTTEENLVSVAYAAGASRDDIRSVLSYFPRLKERLG---- 135 Query: 135 FINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKDVAEGINSLRGPEF 194 SGGE++ + I L+ RP+ +LDE GL + I L E Sbjct: 136 ----EKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHREEG 191 Query: 195 CAFVITHYQRILEHVHPDFVHIMYRGRILTSGGRD 229 ++ D+ +++ GRI+ G + Sbjct: 192 LTILLAEQNARKALEISDYGYVIENGRIVLEGSAE 226 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 68.2 bits (165), Expect = 2e-13 Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 9/215 (4%) Query: 19 LQGVDLVLRTGEVHALMGPNGSGKSTLAHVI--MGHPSYTVTGGRILLDGEDVLELPPEE 76 + GV L + GE +++G +GSGKSTLA I + P + GGRIL G D+L L EE Sbjct: 23 VDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRILYSGVDLLSLAGEE 82 Query: 77 -RAVRGLFLGFQYPAEVSGL----TTGKFVKRVLEKHPARNMPVTQMIKELKEALTRMGL 131 R RG +G + + L T G + L +H + ++ +AL +G+ Sbjct: 83 LRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLASSG-SEAESMAGDALELVGI 141 Query: 132 SQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKDVAEGINSLRG 191 ++ + ++ SGG+++R+ I + L P+ I DE + LD+ + + + L+ Sbjct: 142 PRDRASVYPHQ-LSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKIMDLMKKLQE 200 Query: 192 PEFCAFVITHYQRILEHVHPDFVHIMYRGRILTSG 226 ++ + L + D + +MY G ++ G Sbjct: 201 ERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIG 235 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 68.2 bits (165), Expect = 2e-13 Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 11/239 (4%) Query: 3 ELRIEGLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRI 62 E+R++ + A L+GV + A++GP+G GK+T+ VI G GR+ Sbjct: 5 EVRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAG--LLKPRRGRV 62 Query: 63 LLDGEDVLELPPEERAVRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPARNMPVTQMIKEL 122 G D LPPE R+V +F ++ F R AR ++ +++ Sbjct: 63 FFGGVDYTGLPPERRSVGFVFQDLALFPHMTVYDNVAFGLR------ARGFSGGEVRRQV 116 Query: 123 KEALTRMGLS--QEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALK 180 + AL +GL+ +EF+ R + G SGG+++R+ + + + P +LDE S LD + Sbjct: 117 EWALETVGLTPPREFMGRRVT-GLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQ 175 Query: 181 DVAEGINSLRGPEFCAFVITHYQRILEHVHPDFVHIMYRGRILTSGGRDLVETLEAKGY 239 + + L+ + + + D + IM GRI+ G V T A Y Sbjct: 176 RLLAELKRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEVYTRPANVY 234 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 67.4 bits (163), Expect = 3e-13 Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 10/220 (4%) Query: 7 EGLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRILLDG 66 E L + G + GV + GE+ +L+GPNG+GK+T ++ T G + G Sbjct: 10 EELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLS--TLLRPTSGEAWIAG 67 Query: 67 EDVLELPPEERAVRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPARNMPVTQMIKELKEAL 126 ++ P R V GL P +++ V + +P ++ + +E L Sbjct: 68 YSIVREPGNVRRVIGLV-----PQDLTADDEMSGWDNVYIQARLYGLPSSEARERTREVL 122 Query: 127 TRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKDVAEGI 186 + L + R +SGG ++++EI L+ P+ LDE GLD+ + + + I Sbjct: 123 DYLDLMEAAHRRVAT--YSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYI 180 Query: 187 NSLRGPEFCAFVITHYQRILEHVHPDFVHIMYRGRILTSG 226 L+ + THY E + D V I+ RGRI+ G Sbjct: 181 EDLKRSAVTILLTTHYMEEAEML-SDRVAIIDRGRIVAEG 219 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 67.4 bits (163), Expect = 3e-13 Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 19/173 (10%) Query: 7 EGLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRILLDG 66 EG+ + G+ +L+ V L + G V+ ++GPNG+GK+TL ++G Y GR+ L G Sbjct: 12 EGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLG--LYRADRGRVALLG 69 Query: 67 EDVLELPPEERAVRGLFLGFQYPAE----VSGLTTGKFVKRVLEKHPARNMPVTQMIKEL 122 E P ERA LF Y E +T +F++ A V + L Sbjct: 70 E------PVERAGGSLFRRVAYLPEDGEPYRNMTGHEFLRLY-----ASIYGVEDLEGYL 118 Query: 123 KEALTRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLD 175 +EA GL R +S G ++R+ + ML L+P A+LDE +GLD Sbjct: 119 EEASRLSGLGGRLGERV--RSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLD 169 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 67.4 bits (163), Expect = 3e-13 Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 15/235 (6%) Query: 1 MAELRIEGLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMG----HPSYT 56 + ++R+ GL I K IL+G+ + G V A+MGP+GSGKSTL VI P Sbjct: 3 LMDVRVSGLNVWITDKHILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGAR 62 Query: 57 VTGGRILLDGEDVLELPPEERAVRGLFLGFQYPAEVSGLTTGKFVKRVLEKHP-ARNMPV 115 V G + + + E P R G+ FQ P +T + V + H A+N Sbjct: 63 VEGEVWINNMNVMKEDPYNIRRYTGMV--FQEPNPFPHMTIYENVAIGPKLHGLAKN--- 117 Query: 116 TQMIKELKEALTRMGLSQEFINRSLNE---GFSGGEKKRMEIVQMLMLRPRFAILDEIDS 172 + + E+ E +M + + L++ SGG+++R+ + + L L+PR +LDE + Sbjct: 118 KKELDEIVEWALKMAHLWDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTA 177 Query: 173 GLDIDALKDVAEGINSLRGPEFC-AFVITHYQRILEHVHPDFVHIMYRGRILTSG 226 +D + + + I E ++TH + + D + +Y GR++ G Sbjct: 178 NIDPVSTVKIEQSIVEYAKEEMATVIIVTHTPQQAARI-SDQILFLYEGRVIEYG 231 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 65.5 bits (158), Expect = 1e-12 Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 10/208 (4%) Query: 15 GKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRILLDGEDVLELPP 74 G L+GV G V AL+G NG+GK+TL IMG GRIL+DG ++ P Sbjct: 17 GVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMG--VVKPRKGRILVDGYELRPKGP 74 Query: 75 EERAVRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPARNMPVTQMIKELKEALTRMGLSQE 134 + G+++ Q P G+ + + L R + Q L EA +GL+ + Sbjct: 75 GDSLRSGIYMASQNPPVYPGIKAYEDLAVTL-MVAGRKAGLRQARTMLAEASEALGLNID 133 Query: 135 FINRSLNE-GFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKDVAEGINSLRGPE 193 +R L E GFS E++R+E+++ L L R +LDE + L + + E L Sbjct: 134 -PDRYLGEMGFS--ERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAASG 190 Query: 194 FCAFVITHYQRILEHV-HPDFVHIMYRG 220 ++TH RI E + H D + I+ +G Sbjct: 191 AAVLLVTH--RIGEAMEHADRLVILRKG 216 Score = 54.7 bits (130), Expect = 2e-09 Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 13/175 (7%) Query: 17 PILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRILLDGEDVLELPPEE 76 P L+ L +R GEV + G G+G+ L VI+G GRIL+ G DV PP Sbjct: 268 PRLRMARLEVRQGEVVGVAGVAGNGQEELFEVIVGLRK--PAKGRILIAGVDVTRAPPLA 325 Query: 77 RAVRGLFLGFQYPAEVSG--LTTGKFV--KRVLEKHPARNMPVT--QMIKELKEALTR-M 129 R GL + P E G L G+ + L H AR+ + + ++L E + R M Sbjct: 326 RRRLGLGV---IPEERLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDM 382 Query: 130 GLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKDVAE 184 G+ + ++E SGG +R+ + + L L+PR + +GLD++ + VAE Sbjct: 383 GIKAVSPRQMVDE-LSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAE 436 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 65.1 bits (157), Expect = 2e-12 Identities = 56/175 (32%), Positives = 82/175 (46%), Gaps = 20/175 (11%) Query: 4 LRIEGLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRIL 63 L G+ + G+P+L VDL + GE L+GPNG+GK+TL V +G GGR+L Sbjct: 5 LEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARR--DGGRVL 62 Query: 64 LDGEDVLELPPEERAVRGLFLGFQYPAEVSGLTTGKFVK---RVLEKHPARNMPVTQMIK 120 L+G D E RA G+ + F+ P S + +F++ ++ P+R Sbjct: 63 LNGLDPWR---EPRAREGVGVVFERPNLPSSMPVVEFLESAAAIIGSSPSR--------- 110 Query: 121 ELKEALTRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLD 175 + A+ GL E S G K+R I L+ PRF + DE S LD Sbjct: 111 -VDWAIRAAGL--EGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLD 162 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 65.1 bits (157), Expect = 2e-12 Identities = 62/237 (26%), Positives = 106/237 (44%), Gaps = 14/237 (5%) Query: 19 LQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRILLDGEDVLELPPEERA 78 L+GV + GE+++ +GPNG+GK+T ++ GG + G DV++ E R Sbjct: 28 LKGVSFSVYEGEIYSFLGPNGAGKTTTVRIL--STLLDPDGGEARVAGFDVVKERWEVRK 85 Query: 79 VRGLFLGFQ--YPAEVSGLTTGKFVKRVLEKHPARNMPVTQMIKELKEALTRMGLSQEFI 136 G+ L + + +++G + R+ +P ++ +KE L +GL+ Sbjct: 86 RIGVMLSVERGFYWKLTGRENLYYFGRIY------GIPQGELKSRIKEVLDLVGLTDLGG 139 Query: 137 NRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKDVAEGINSLRGPEFCA 196 E S G K R+ + ++L+ P ILDE GLD + + + I SL Sbjct: 140 ADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSLASEGRTI 199 Query: 197 FVITHYQRILEHVHPDFVHIMYRGRILTSGGRDLVETLEAKGYEWLRKEFGIEEDEH 253 F+ TH E + D V I+ GRI G D L+ + + + EF ++ H Sbjct: 200 FITTHNMVEAEMI-SDRVGIIIGGRIAMEGTPD---ELKRRVFSSINLEFRVKASGH 252 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 64.7 bits (156), Expect = 2e-12 Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 13/218 (5%) Query: 19 LQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRILLDGEDVLELPPEERA 78 L GVDL + G + +L+GPNG+GK+TL ++ G + G DV+ R+ Sbjct: 29 LDGVDLKVGRGTLFSLLGPNGAGKTTLVKIL--STLLLPDSGWARVAGFDVVREANNVRS 86 Query: 79 VRGLFLGFQYPA--EVSGLTTGKFVKRVLEKHPARNMPVTQMIKELKEALTRMGLSQEFI 136 G+ LG + +SG F ++ +P + + +KE L +GL + Sbjct: 87 RIGVVLGGERALYWRLSGWDNLWFFSQLY------GIPPREAKRRVKELLEIVGLEEWAH 140 Query: 137 NRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKDVAEGINSLRGPEFCA 196 R E +S G K+R+ I + L+ P +LDE GLD A ++V I + Sbjct: 141 VRV--ENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTV 198 Query: 197 FVITHYQRILEHVHPDFVHIMYRGRILTSGGRDLVETL 234 + THY E + D V I+ +GRI+ G + +++L Sbjct: 199 LLTTHYMVEAEEL-SDRVAIISKGRIVAEGPPEDLKSL 235 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 64.7 bits (156), Expect = 2e-12 Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 8/186 (4%) Query: 4 LRIEGLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRIL 63 +++E + A L V L + G + ++GPNG+GKSTL + G TV GR+L Sbjct: 6 IKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFT--TVYKGRVL 63 Query: 64 LDGEDVLELPPEERAVRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPARNMPVTQMIKELK 123 + DV +PP +RA G+ FQ LT + ++ ++P L+ Sbjct: 64 FENTDVTHMPPHDRAKIGMTFIFQLENIFRELTVYENLRLA-----GYDLPEDVFRDRLE 118 Query: 124 EALTRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKDVA 183 E + +E + + SGGE++ + + +M +P+ ++DE +GL K+V Sbjct: 119 EVFSMFPRLKERLGQKAGT-LSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVL 177 Query: 184 EGINSL 189 + L Sbjct: 178 SYVRIL 183 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 63.9 bits (154), Expect = 4e-12 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 12/202 (5%) Query: 4 LRIEGLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVI--MGHPSYTVTGGR 61 L + GL G+ +L+GVD+ L GE +MGP+GSGKSTL I + P G Sbjct: 5 LEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPD----SGS 60 Query: 62 ILLDGEDVLELPPEERAVRGLFLGF--QYPAEVSGLTTGKFVKRVLEKHPARNMPVTQMI 119 I+ G DV L + + +G+ Q + +T + + LEK A + Sbjct: 61 IVFRGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEK--ALGLSRRDAE 118 Query: 120 KELKEALTRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDAL 179 + + L+ +G+ E + SGG+++R + + L + P +LDE S LD ++ Sbjct: 119 ERAVKYLSMLGI--EDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESR 176 Query: 180 KDVAEGINSLRGPEFCAFVITH 201 DV E + + V+TH Sbjct: 177 ADVLEALFRVATLGKAMIVVTH 198 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 63.9 bits (154), Expect = 4e-12 Identities = 70/240 (29%), Positives = 105/240 (43%), Gaps = 29/240 (12%) Query: 8 GLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMG--HPSYTVTGGRILLD 65 GLR G+ + GV + GE +MGPNGSGK+TL ++ G PS GG + + Sbjct: 9 GLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPS----GGSVRVC 64 Query: 66 GEDVLELPPEERAVRGLFLGF--QYPAEVSGLTTGKFVKRV-----LEKHPARNMPVTQM 118 G DV R RGL +GF Q P +T +++ V L AR Sbjct: 65 GYDV--WGDGWREARGL-IGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVAR------- 114 Query: 119 IKELKEALTRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDA 178 +E + L +G ++ + R + SGG+++ + I L P +LDE SGLD+ A Sbjct: 115 -REARRVLEMLGF-EDVLGRVVAR-LSGGQRRALGIALALASNPEVVVLDEPGSGLDVRA 171 Query: 179 LKDVAEGINSLRGPEFCAFVITHYQRILEHVHPDFVHIMYRGRILTSG-GRDLVETLEAK 237 + + + F Q D V IM+RGR+ G R+L++ K Sbjct: 172 RESLWASLRKAFKGRTVLFSSHDPQE--AEAESDRVLIMHRGRLAAWGKPRELIQRYAPK 229 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 62.4 bits (150), Expect = 1e-11 Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 10/175 (5%) Query: 1 MAELRIEGLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGG 60 MA +++EG+ ++ V+L + E +++GP+GSGK+TL ++I G Y + G Sbjct: 1 MASVKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAG--IYKPSRG 58 Query: 61 RILLDGEDVLELPPEERAVRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPARNMPVTQMIK 120 RI + DV +LPP + R + L FQ A +T + + L + + + Sbjct: 59 RIYFNDVDVTDLPPNK---RNIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVL 115 Query: 121 ELKEALTRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLD 175 + + L GL + + SGG+++R+ + + L+ P +LDE S LD Sbjct: 116 SVAKLLGIEGLLDRYPAQ-----LSGGQQQRVALARALVKEPEVLLLDEPLSNLD 165 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 62.0 bits (149), Expect = 1e-11 Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 13/215 (6%) Query: 19 LQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGH-PSYTVTG-GRILLD-----GEDVLE 71 L GV+L + GE+ A++G +G GKSTLA I PS V G I+L+ D++ Sbjct: 25 LDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNTVDLVR 84 Query: 72 LPPEERA-VRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPA-RNMPVTQMIKELKEALTRM 129 L +E +RG + + + L+ VK+ + H + V ++ +E+ + L M Sbjct: 85 LSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDHVSGEKRRVEKIAQEILKKL--M 142 Query: 130 GLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKDVAEGINSL 189 + I SGG K+R+ I L+ RPR I DE + LD+ + + ++ L Sbjct: 143 MPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKMLSRL 202 Query: 190 RGP-EFCAFVITHYQRILEHVHPDFVHIMYRGRIL 223 R E +ITH + + D + +MY G ++ Sbjct: 203 REELETTIILITHNLAVAAEI-ADRIAVMYAGHVV 236 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 61.6 bits (148), Expect = 2e-11 Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 14/224 (6%) Query: 1 MAELRIEGLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGG 60 MA +R+E + L V L + GE+ L+GP+G GK+T VI G T G Sbjct: 1 MAGIRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFE--TPDEG 58 Query: 61 RILLDGEDVLELPPEERAVRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPARNMPVTQMIK 120 R+ + DV L P ER +F + + + + R +P +++++ Sbjct: 59 RVYIGSRDVTMLKPYERNTAMVFQNYALWPHM------RVFDNIAYGLKLRKLPRSEIVR 112 Query: 121 ELKEALTRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALK 180 ++ A + + ++R ++ SGG+++R+ + + ++ P ++DE S LD Sbjct: 113 RVRWAAELLEI-DHLLDRYPHQ-LSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRL 170 Query: 181 DVAEGINSLRGPEFCAFV-ITHYQ-RILEHVHPDFVHIMYRGRI 222 + E I L+ V +TH Q L H V +M RGR+ Sbjct: 171 KMREEIVRLQKRLGVTIVYVTHDQEEALSISHR--VAVMNRGRV 212 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 61.6 bits (148), Expect = 2e-11 Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 18/223 (8%) Query: 4 LRIEGLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRIL 63 +R+E L G+P+L GV+L R + ++GPNG+GK+T I+G GR+ Sbjct: 3 VRVEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILG--LIKPARGRVF 60 Query: 64 LDGEDVLELPPEERAVRGLFLGF--QYPA--EVSGLTTGKFVKRVLEKHPARNMPVTQMI 119 LDG + P + G + G+ Q P+ ++S +T +FV+ L R VT+ Sbjct: 61 LDGFEATGRP----EMVGRYAGYVPQNPSAPKLSPMTVREFVETSL-----RLRGVTRAR 111 Query: 120 KELKEALTRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDAL 179 + E L +G+ E + L E S G +R+ I + + P+ ++DE + +D Sbjct: 112 ERAVEVLHTLGIRGEVLESRLWE-LSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGR 170 Query: 180 KDVAEGINSLRGPEFCAFVITHYQRILEHVHPDFVHIMYRGRI 222 ++A I L ++T + L H D + ++ R I Sbjct: 171 MEIARIIAGLARERL--VLMTSHDPSLLLGHTDIIVVINRDLI 211 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 61.2 bits (147), Expect = 2e-11 Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 8/209 (3%) Query: 14 EGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRILLDGEDVLELP 73 +G L VD LR GEVHAL+G NG+GK+TL ++ G T+ G I + G V Sbjct: 24 DGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTM--GEIYVWGRKVSWRG 81 Query: 74 PEERAVRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPARNMPVTQMIKELKEALTRMGLSQ 133 P + G+ + +Q V +T + + L + + ++ + E R+GL Sbjct: 82 PWDAIRNGIAMVYQQFRLVESMTVEENIAIYLS---SLGLGRSEARRRTLETAERLGLEI 138 Query: 134 EFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKDVAEGINSLRGPE 193 + + G ++R+EI++ L + ILDE S L + + + L+ Sbjct: 139 DLAKTVAD--LPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLRLLKDMG 196 Query: 194 FCAFVITHYQRILEHVHPDFVHIMYRGRI 222 ITH + V D V ++ RGR+ Sbjct: 197 VSVVYITHKLGEVVRV-ADRVTVLRRGRV 224 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 61.2 bits (147), Expect = 2e-11 Identities = 67/255 (26%), Positives = 115/255 (45%), Gaps = 45/255 (17%) Query: 19 LQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMG-HPSYTVTGGRILLD---GEDVLELPP 74 + GV L L+ GE+ ++G +GSGK+TLA I+G H +T G + +D GE + Sbjct: 30 VDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFT---GHVFIDIDKGELEEAVSI 86 Query: 75 EERAVRG------------LFLGFQYPAEVSGLTTGKFVKRV--LEKHPARN----MPVT 116 E RG + P + KF ++V +++ P + M V Sbjct: 87 YEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMKVG 146 Query: 117 QMIKE-----------------LKEALTRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLM 159 ++I E + E L +GL +EF +R E SGG+++R+ I + L Sbjct: 147 EIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYE-LSGGQRQRVAIARALA 205 Query: 160 LRPRFAILDEIDSGLDIDALKDVAEGINSL-RGPEFCAFVITHYQRILEHVHPDFVHIMY 218 L P+ +LDE S LD+ + + L + +ITH ++ ++ V +MY Sbjct: 206 LNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVV-VMY 264 Query: 219 RGRILTSGGRDLVET 233 G+I+ S + ++ T Sbjct: 265 SGKIMESAPKHILFT 279 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 60.5 bits (145), Expect = 4e-11 Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 17/217 (7%) Query: 19 LQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMG--HPSYTVTGGRILLDGEDVL--ELPP 74 + GVDL +R GEV A++G +G GK+TL I+G PS G I GE + L Sbjct: 38 VDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPS----DGAIYYRGELLTPHRLAR 93 Query: 75 EERAVRGLFLGFQYPAEVSG--LTTGKFVKRVLEKHP-ARNMPVTQMIKELKEALTRMGL 131 + R R L + FQ P + + G V L H AR + E+ E +GL Sbjct: 94 DRRLRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLET---VGL 150 Query: 132 S--QEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKDVAEGINSL 189 + +EF R ++ SGG+++R+ I + L+L P + DE S +D+ + + I Sbjct: 151 TPGREFYWRKPHQ-LSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDY 209 Query: 190 RGPEFCAFVITHYQRILEHVHPDFVHIMYRGRILTSG 226 V+ + + D + +MY G+I+ G Sbjct: 210 HRRTGATIVLITHDIAVARAVADRIAVMYLGKIVEVG 246 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 60.1 bits (144), Expect = 5e-11 Identities = 52/233 (22%), Positives = 95/233 (40%), Gaps = 18/233 (7%) Query: 7 EGLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRILLDG 66 E + G L V + +R GE+ ++GPNG+GK++L +VI G Y GR+ G Sbjct: 5 ENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITG--VYKPQRGRVYFKG 62 Query: 67 EDVLELPPEERAVRGLFLGFQYPAEVSGLTT-------------GKFVKRVLEKHPARNM 113 D+ L P +R GL FQ+ +T G +++ L A+ Sbjct: 63 RDITGLKPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRW 122 Query: 114 PVTQMIKELKEALTRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSG 173 V + + + + + L + S G +K++++ L P ++DE +G Sbjct: 123 EV-EARERAEHVIDLLDLHEH--RHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAG 179 Query: 174 LDIDALKDVAEGINSLRGPEFCAFVITHYQRILEHVHPDFVHIMYRGRILTSG 226 L + +D+ I V+ + + D V +M G+++ G Sbjct: 180 LSKEEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEG 232 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 59.3 bits (142), Expect = 9e-11 Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 20/220 (9%) Query: 4 LRIEGLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRIL 63 LR G + + +L+ V++ + G V A++G +G+GK+TL +I+G GG Sbjct: 441 LRAFGAERRVVERYVLKDVNITVNPGSVAAVVGASGAGKTTLLRMILG--KALGIGGEGY 498 Query: 64 LDGEDVLELPPEERAVRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPARNM--PVTQMIKE 121 V+++P +A A + G F L +H A + P + Sbjct: 499 RPDSGVVKIPTNTKAA----------ALLPGELEPSFGGETLLEHVASKLGDPGAAV--- 545 Query: 122 LKEALTRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKD 181 E L+ +GL R+ S G+K+R ++ +L RP ++DE + LD + Sbjct: 546 --EVLSSVGLGDAIFFRASFGELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLTARR 603 Query: 182 VAEGINSL-RGPEFCAFVITHYQRILEHVHPDFVHIMYRG 220 +A + L R V T+ IL+ + PD V ++ G Sbjct: 604 IARKLGKLARSKGITLIVSTNRPEILDALQPDTVILVGYG 643 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 58.5 bits (140), Expect = 2e-10 Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 23/251 (9%) Query: 4 LRIEGLRAEIE-GKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRI 62 +R+EG+ A P+L+GV L G + AL+GPNGSGK+TL ++ G + GR+ Sbjct: 6 VRLEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAG--IIKPSRGRV 63 Query: 63 LLDGEDVLELPPEERAVRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPARNMPVTQMIKEL 122 + G P R R LG+ PA K V+ L + V ++ Sbjct: 64 EVCGS------PPGRVRR--MLGYA-PASPEVDPRLKAVEVALLYRYGVSEGVAWGRRDW 114 Query: 123 KEALTRMGLS--QEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALK 180 +E L +G E R E S G+++ + + +L RP A+LDE S LD+ ++ Sbjct: 115 EEVLAALGEMGVGELAWRRWGE-LSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMR 173 Query: 181 DVAEGINSLRGPEFCAFVITHYQRILEHVHPDFVHIMYRGRILTSGGRDLVETLEAKGYE 240 V + SLRG A ++ L + D V ++ G + G + V T E Sbjct: 174 RVTLVLRSLRGR---ATIVYTTHDPLAAMAADSVIMLREGLLHAQGPPEAVVTPET---- 226 Query: 241 WLRKEFGIEED 251 + + +GI D Sbjct: 227 -IEEVYGIPAD 236 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 57.8 bits (138), Expect = 3e-10 Identities = 60/241 (24%), Positives = 107/241 (44%), Gaps = 32/241 (13%) Query: 19 LQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRILLDGEDVLELPPEERA 78 + GV + GEV L+G +G GK+T I+ TGGR+ + + E R Sbjct: 50 VDGVSFSIARGEVFCLVGESGCGKTTTGKAILR--LVKATGGRVFFKPKKEVLEELERRG 107 Query: 79 VRGLFLGFQ--------------------YPAEVSGLTTGKFVKRVLEK----HPARNMP 114 V+ L GF Y L +KR+LE H N Sbjct: 108 VKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNAR 167 Query: 115 VTQ-MIKELKEALTRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSG 173 + M+ + EA+ ++ + +F++R ++ SGG+++R+ I + +L P + DE S Sbjct: 168 EREEMVARMLEAV-KLTPASDFMDRYPHQ-LSGGQRQRVAIARAFILNPSLVVADEPVSM 225 Query: 174 LDIDALKDVAEGINSLRGPEFCAFV-ITHYQRILEHVHPDFVHIMYRGRILTSG-GRDLV 231 LD+ ++ E + R + + ITH + ++ D + +MY G+I+ +G R ++ Sbjct: 226 LDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYI-CDRIAVMYLGKIVETGDARRII 284 Query: 232 E 232 E Sbjct: 285 E 285 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 54.7 bits (130), Expect = 2e-09 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 13/161 (8%) Query: 19 LQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRILLDGEDVLELPPEE-R 77 L+ V L + GEV A+MGP+GSGK+TL ++I G GR+++DG +V EE R Sbjct: 30 LREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVD--RPNAGRVIVDGFEVSSAGGEELR 87 Query: 78 AVRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPARNMPVTQMIKELK--EALTRMGLSQEF 135 R +G+ + + + + T ++ +L M + L+ E L R+GL + Sbjct: 88 RFRLERVGYVF-QQHNLIPTLTALENIL-----LPMALAGKANRLRGQELLRRVGLGGK- 140 Query: 136 INRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDI 176 R E SGGE++R+ + L P + DE LDI Sbjct: 141 -ERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDI 180 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 53.5 bits (127), Expect = 5e-09 Identities = 57/212 (26%), Positives = 87/212 (41%), Gaps = 9/212 (4%) Query: 19 LQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRILLDGEDVLELPPEERA 78 L GV L + GE+ AL+G NG+GK+T I G G I+ G D+ LP +R Sbjct: 22 LFGVSLRVYKGEIVALLGGNGAGKTTTLLTISG--LLKPRNGSIIWQGRDITGLPAFKRV 79 Query: 79 VRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPARNMPVTQMIKELKEALTRMGLSQEFINR 138 G+ + E G+ V L + L++ T + + R Sbjct: 80 EEGI----SHVPEGRGIFPRLTVYENLRVAASTRRAKEHFQDSLEQVYTIFPILK--ARR 133 Query: 139 SLNEG-FSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKDVAEGINSLRGPEFCAF 197 S G SGGE++ + I + L+ RP ++DE GL +DV + LR Sbjct: 134 SQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLASRLREELGVTI 193 Query: 198 VITHYQRILEHVHPDFVHIMYRGRILTSGGRD 229 ++ L D ++M GRI+ G D Sbjct: 194 LLVEQNVGLSLKVADRGYVMETGRIVLEGASD 225 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 50.8 bits (120), Expect = 3e-08 Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 23/203 (11%) Query: 27 RTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRILLDGEDVLELPPEERAVRGLFLGF 86 R G+V L+G NG+GK+T ++ G + GR+ +G + PE + F G Sbjct: 104 REGQVVGLLGRNGTGKTTALRILAGELKPNL--GRV--EGGE-----PEWDEILKRFRGS 154 Query: 87 QYPAEVSGLTTGK--------FVKRVLEKHPARNMPVTQMIKELKEALT---RMGLSQEF 135 + L GK +V+ V + R + + E AL ++GL + F Sbjct: 155 ELQTYFRKLVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGVALELAEQVGLDKVF 214 Query: 136 INRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKDVAEGINSLRGPEFC 195 +R + + SGGE ++M IV +L I DE S LDI +A I P Sbjct: 215 -DRDVRQ-LSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAARPGAY 272 Query: 196 AFVITHYQRILEHVHPDFVHIMY 218 V+ H +L++V D VHI+Y Sbjct: 273 VMVVEHDLAVLDYV-SDLVHILY 294 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 47.8 bits (112), Expect = 3e-07 Identities = 54/178 (30%), Positives = 80/178 (44%), Gaps = 24/178 (13%) Query: 2 AELRIEGLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMG--HPSYTVTG 59 A LR+E + + G+ +L+GV L L GE + G NGSGK+TL + G PS Sbjct: 3 ALLRLENVWKMLGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPS----R 58 Query: 60 GRILLDGEDVLELPPEERAVRGLFLGFQYPAEVSGLTTGKFVKRVLEKHPAR--NMPVTQ 117 GR+ P R G ++G P LT + V+ H + P+ Sbjct: 59 GRVSWG------CPRGPRGCVG-YVG-HTPMVYGDLTVWENVEFFSSLHGGSLGDYPLA- 109 Query: 118 MIKELKEALTRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLD 175 EA +GL E L S G ++R+++V+ L+ PR +LDE +GLD Sbjct: 110 -----AEAWRLLGL--EKYGSHLASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLD 160 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 46.6 bits (109), Expect = 6e-07 Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 33/218 (15%) Query: 4 LRIEGLRAEIEGKPILQGVDLVLRTGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRIL 63 + +EGL L+GV + +GEV +GPNG+GK+T V+MG T R+ Sbjct: 5 IEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARVF 64 Query: 64 LDGEDVLELPPEERAVR---GLFLG-FQYPAEVSGLTTGKFVKRVLEKHPARNMPVTQMI 119 G ++ P VR G G F++ VSG + R++ ++ Sbjct: 65 --GVELYN--PGASGVRRRVGYVPGEFEFYGGVSGGRMLDYWCRLV------GGCSRGVV 114 Query: 120 KELKEALTRMGLSQEFINRSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLD---- 175 +EL EA + R++ +S G K+ + +V P ++DE +GLD Sbjct: 115 RELLEAFPLP------LERAVGT-YSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLAR 167 Query: 176 ---IDALKDVA-EGINSLRGPEFCAFVITHYQRILEHV 209 +D ++ A EG+ F + V++ QR+ + V Sbjct: 168 GRVLDFVRSKAREGVTVF----FSSHVLSEVQRVADRV 201 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 43.1 bits (100), Expect = 7e-06 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 28/225 (12%) Query: 19 LQGVDLVLRTGEVHALMGPNGSGKSTLAHVI--MGHPSYTVTGGRILLDGE-----DVLE 71 ++ V + GE + L+G G GKS + + + +P + G+I E D++ Sbjct: 29 IEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGRIVEGKIYYYPEPGRRVDIMS 88 Query: 72 LPPEE-RAVRGLFLGFQYPAEVSGL----TTGKFVKRVLEKHPARNMPVTQMIKELKEAL 126 L +E R +RG + + + + L T G V + H ++ L+E + Sbjct: 89 LDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETMLAHGR--------VRSLREGV 140 Query: 127 TR-MGLSQEFIN-------RSLNEGFSGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDA 178 R +G+ + + +S SGG K+R I L RP+ I DE + LD+ Sbjct: 141 RRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLIADEPTTALDVTI 200 Query: 179 LKDVAEGINSLRGPEFCAFVITHYQRILEHVHPDFVHIMYRGRIL 223 + + + L+ ++ + L + D V +MY G I+ Sbjct: 201 QAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIV 245 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 40.8 bits (94), Expect = 3e-05 Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 14/185 (7%) Query: 28 TGEVHALMGPNGSGKSTLAHVIMGHPSYTVTGGRILLDGEDVLELPPEERAVRGLFLGFQ 87 T + ++GPNG+GK+TL I+G + G IL++G + P L Sbjct: 28 TSGILGVLGPNGAGKTTLLKTILG--LVKPSAGEILVEG-----VNPRSPGFEKLLPRIG 80 Query: 88 YPAEVSGL---TTGKFVKRVLEKHPARNMPVTQMIKELKEALTRMGLSQEFINRSLNEGF 144 Y E+ + TT + L + + +EAL +GL+ E + Sbjct: 81 YVPELPVVPLWTTPCILLETLAR--LEGYTSVEARVRAREALEVVGLAGEC--ETPIGKL 136 Query: 145 SGGEKKRMEIVQMLMLRPRFAILDEIDSGLDIDALKDVAEGINSLRGPEFCAFVITHYQR 204 S G +KR+ + Q + +LDE SGLD + + V E + ++ V +H R Sbjct: 137 SKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAREGATVIVSSHILR 196 Query: 205 ILEHV 209 LE + Sbjct: 197 ELEDI 201 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.141 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 283,438 Number of Sequences: 1700 Number of extensions: 13342 Number of successful extensions: 161 Number of sequences better than 1.0e-04: 39 Number of HSP's better than 0.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 23 Number of HSP's that attempted gapping in prelim test: 88 Number of HSP's gapped (non-prelim): 49 length of query: 258 length of database: 492,079 effective HSP length: 75 effective length of query: 183 effective length of database: 364,579 effective search space: 66717957 effective search space used: 66717957 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718278|ref|YP_003873810.1| hypothetical protein STHERM_c05720 [Spirochaeta thermophila DSM 6192] (465 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601570|ref|NP_148110.1| FeS assembly protein SufB [Aeropyru... 392 e-110 gi|14601571|ref|NP_148111.1| FeS assembly protein SufD [Aeropyru... 40 9e-05 >gi|14601570|ref|NP_148110.1| FeS assembly protein SufB [Aeropyrum pernix K1] Length = 476 Score = 392 bits (1007), Expect = e-110 Identities = 187/454 (41%), Positives = 285/454 (62%) Query: 6 IDFGEYKYGFSDVVKPVVQEEKGLSEEVVKRISYYKEEPDWMREFRLRAYRIFKSKPMPT 65 +D E G VK ++ ++ ++ IS K+EP+WM+ RLR+ +F P P Sbjct: 15 VDLAERLLGRERPVKSEIEIRGKITRSTIEEISRIKKEPEWMKRLRLRSLELFYKLPTPK 74 Query: 66 WGVDLSALNFDDIYYYVRPTDRAGRSWDEVPETIKRTFDRLGIPEAERKYLAGVGAQYDS 125 W V + ++ D++ Y +P SW+E+P+ I+ ++RLG+PE E ++L+G+ A +DS Sbjct: 75 WLVGIDVIDLDEMIVYSKPETERASSWEELPKEIREFYERLGLPEIEARFLSGLSAVFDS 134 Query: 126 EMVYHSIKEELASKGVIFCDPETAVREYPDLMRKYFGTVVPPGDNTFAALNSAVWSGGSF 185 E VY +K+ L KGVI E AV++YPDL+++YF V PP D+ FAAL+ A+WSGG+F Sbjct: 135 ETVYARVKKYLEEKGVIVMPIEEAVQKYPDLVKRYFMRVFPPSDHKFAALHGALWSGGTF 194 Query: 186 VYVPKGVHVDIPLQAYFRINTQNMGQFERTLIIADEGSFVHYIEGCTAPVYTTASLHAAV 245 +YVP+GV + P++++F I GQFE +LI+ADEG++V +IEGC+AP T S H + Sbjct: 195 IYVPRGVKIREPIESFFLIGKSGEGQFEHSLIVADEGAYVEWIEGCSAPRLTKFSFHDGM 254 Query: 246 VEIIALPGARVRYSTIQNWSGDVYNLVTKRAVAYEHATVEWVDGNIGSRKTMKYPSVYLM 305 VE A A ++ T+QNWS DV NL KRA+A E A V+WV+G+IGS+ T YPS L Sbjct: 255 VEAYAHRNATIKIITVQNWSKDVINLNNKRAIAEEGARVDWVEGSIGSKMTFVYPSTILK 314 Query: 306 GPYAHGEVLSIAFAGKGQEQDTGAKMIHAAXXXXXXXXXXXXXXDGGIATYRGLVRVEEG 365 G + + A +D+G+KMIH DGGI YRG++R+ +G Sbjct: 315 GDNSSSRSAVVTIAKGPYLKDSGSKMIHVGRNTRSQVINKTISADGGINVYRGIIRIVKG 374 Query: 366 VRGARSHVVCDALIMDPQSVSRTFPYMEIKSPHVHMEHEAKVSRVSEQQLFYLMSRGFSE 425 R A ++V C++LI+D +S + T+P+ ++ P + HEA R++E QLFYL SRG +E Sbjct: 375 ARNAVANVECESLILDDKSKAHTYPHNQVDEPTASVNHEATTGRLTEPQLFYLTSRGLTE 434 Query: 426 DEAAAMIVNGFIDPLVKQLPMEYAVELNRLIELE 459 +EA ++IV GF++ ++K+LP EYA L +++ LE Sbjct: 435 EEAKSLIVLGFLEDVLKELPFEYANVLTKVVRLE 468 >gi|14601571|ref|NP_148111.1| FeS assembly protein SufD [Aeropyrum pernix K1] Length = 391 Score = 40.4 bits (93), Expect = 9e-05 Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 5/166 (3%) Query: 292 GSRKTMKYPSVYLMGPYAHGEVLSIAFAGKGQEQDTGAKMIHAAXXXXXXXXXXXXXXDG 351 G R T L G + + L+ A D +H Sbjct: 225 GGRMTRFQDDNLLDGRLSSLKALASTVARPNTASDVIISSLHNGPESDGEVRARGVVVGN 284 Query: 352 GIATYRGLVRVEEGVRGARSHVVCDALIMDPQSVSRTFPYMEIKSPHV-HMEHEAKVSRV 410 G RG+ + E R A S V ++ + P +EI + + H A V+ + Sbjct: 285 GYLAQRGVAMLGETARLAASEVESYIFLLSEKGKGYAVPVLEIHTGEITRAGHSAAVASL 344 Query: 411 SEQQLFYLMSRGFSEDEAAAMIVNG---FIDPLVK-QLPMEYAVEL 452 +E +FYL SRG + + +++ G F L K ++P + + L Sbjct: 345 AEDTIFYLKSRGLDDKDIVTLVMEGITRFSGVLEKMEIPFNWLINL 390 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 480,225 Number of Sequences: 1700 Number of extensions: 21343 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 2 length of query: 465 length of database: 492,079 effective HSP length: 80 effective length of query: 385 effective length of database: 356,079 effective search space: 137090415 effective search space used: 137090415 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718279|ref|YP_003873811.1| hypothetical protein STHERM_c05730 [Spirochaeta thermophila DSM 6192] (360 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601570|ref|NP_148110.1| FeS assembly protein SufB [Aeropyru... 75 2e-15 gi|14601571|ref|NP_148111.1| FeS assembly protein SufD [Aeropyru... 62 2e-11 >gi|14601570|ref|NP_148110.1| FeS assembly protein SufB [Aeropyrum pernix K1] Length = 476 Score = 75.5 bits (184), Expect = 2e-15 Identities = 48/167 (28%), Positives = 80/167 (47%) Query: 166 ERGAVLEHASLVTGSWFTKQRVHVRLAGEGAEAFLRGVMVAGRGDHYDARTVQEHVGPQT 225 E GA ++ GS T L G+ + + V +A D+ + HVG T Sbjct: 288 EEGARVDWVEGSIGSKMTFVYPSTILKGDNSSSRSAVVTIAKGPYLKDSGSKMIHVGRNT 347 Query: 226 RSLAQYHAVAGEDGRTVYQGLIEVAGSARGTDAYLSNKNLLLSEEAASYSIPTLSIGTDD 285 RS ++ + G VY+G+I + AR A + ++L+L +++ +++ P + Sbjct: 348 RSQVINKTISADGGINVYRGIIRIVKGARNAVANVECESLILDDKSKAHTYPHNQVDEPT 407 Query: 286 VRCSHGSTTGHVREEELFYLRSRGIPEEEAVGLLAAAHIRAVTDHLP 332 +H +TTG + E +LFYL SRG+ EEEA L+ + V LP Sbjct: 408 ASVNHEATTGRLTEPQLFYLTSRGLTEEEAKSLIVLGFLEDVLKELP 454 >gi|14601571|ref|NP_148111.1| FeS assembly protein SufD [Aeropyrum pernix K1] Length = 391 Score = 62.0 bits (149), Expect = 2e-11 Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 1/217 (0%) Query: 104 HVLVEARPGDQGVVRLVHEGGRGSVLNVLVSVWVGEGARVVLVDEGXXXXXXXXXXXXWG 163 HV++E G +G + + + +V +G A V + + Sbjct: 150 HVVIEVGEGAKGEIIYIDYSVSPGLKTTVVEARMGRDAEVEVTNIVLHGSRSAVYTLRGF 209 Query: 164 EVERGAVLEHASLVTGSWFTKQRVHVRLAGEGAEAFLRGVMVAGRGDHYDARTVQEHVGP 223 EV A LE L++G T+ + L G + VA D H GP Sbjct: 210 EVLDKASLEQYYLISGGRMTRFQDDNLLDGRLSSLKALASTVARPNTASDVIISSLHNGP 269 Query: 224 QTRSLAQYHAVAGEDGRTVYQGLIEVAGSARGTDAYLSNKNLLLSEEAASYSIPTLSIGT 283 ++ + V +G +G+ + +AR + + + LLSE+ Y++P L I T Sbjct: 270 ESDGEVRARGVVVGNGYLAQRGVAMLGETARLAASEVESYIFLLSEKGKGYAVPVLEIHT 329 Query: 284 DDV-RCSHGSTTGHVREEELFYLRSRGIPEEEAVGLL 319 ++ R H + + E+ +FYL+SRG+ +++ V L+ Sbjct: 330 GEITRAGHSAAVASLAEDTIFYLKSRGLDDKDIVTLV 366 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 385,914 Number of Sequences: 1700 Number of extensions: 18958 Number of successful extensions: 78 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 76 Number of HSP's gapped (non-prelim): 2 length of query: 360 length of database: 492,079 effective HSP length: 78 effective length of query: 282 effective length of database: 359,479 effective search space: 101373078 effective search space used: 101373078 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718280|ref|YP_003873812.1| hypothetical protein STHERM_c05740 [Spirochaeta thermophila DSM 6192] (100 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.138 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,181 Number of Sequences: 1700 Number of extensions: 3907 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 100 length of database: 492,079 effective HSP length: 64 effective length of query: 36 effective length of database: 383,279 effective search space: 13798044 effective search space used: 13798044 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718281|ref|YP_003873813.1| cysteine desulfurase [Spirochaeta thermophila DSM 6192] (413 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601789|ref|NP_148330.1| cysteine desulfurase [Aeropyrum per... 319 7e-89 gi|118431577|ref|NP_148146.2| aminotransferase [Aeropyrum pernix... 75 4e-15 gi|118430843|ref|NP_146906.2| pyridoxal-dependent decarboxylase ... 42 3e-05 >gi|14601789|ref|NP_148330.1| cysteine desulfurase [Aeropyrum pernix K1] Length = 411 Score = 319 bits (818), Expect = 7e-89 Identities = 188/404 (46%), Positives = 248/404 (61%), Gaps = 15/404 (3%) Query: 12 LRAEFPILSRRMGGRPLVYLDNAATTQRPSRVIEAMRSYAREHHANVHRGLHTLSVEATS 71 +R+EFP L R +VYLDNAA+T +P RV+EAMR ++ +ANVHRG+H LS+EA+ Sbjct: 9 VRSEFPELERG-----IVYLDNAASTLKPRRVVEAMREFSYRSYANVHRGVHRLSMEASK 63 Query: 72 LYEEARREVARFIGAGSEREIVFTRNATEAINLVAHTWAEAFLEPGDVVVLSEMEHHSNL 131 YE+A VAR +G GS E+VFTRN TEA+ L A T A L G V+++ +HHS L Sbjct: 64 AYEDAHEVVARLVG-GSWDEVVFTRNTTEAMQLAALTLAYNGLLRGGEVLVTAADHHSTL 122 Query: 132 IPWQLLARRKGVQLAFLPFDENGMLDLASLDELWTERVKLVSLVHVSNVFGTVNPVEEIV 191 +PW AR G + LP D G+ L++ TE + V++ HVSNV G V PVE+IV Sbjct: 123 LPWVRAARLGGGRARILPLDGRGVPRWDLLEDYITEDTRAVAVGHVSNVTGVVAPVEDIV 182 Query: 192 EYAHRRGALVLLDGAQAVPHLPISIEALGCDFLAFSGHKMYGPMGIGVLYAREELLEAMP 251 + A + GALV+LD AQ VPHLP+ +G D AFSGHKM GP GIGVL+AR +LLE + Sbjct: 183 KAAKKVGALVVLDSAQGVPHLPVDFRRMGVDMAAFSGHKMLGPTGIGVLWARRDLLEELE 242 Query: 252 PFLGGGEMIRSVTLETAT----WNEVPHKFEAGTPNVEGAVGLAEAVRFLREVGMEAVAA 307 P LGGG + V L+ + W E P KFEAGTP + AVGLAEA L E+GME VA Sbjct: 243 PPLGGGGTVSRVRLQGGSVEIEWEEPPWKFEAGTPPIIEAVGLAEAANMLMEIGMEHVAR 302 Query: 308 HERELTAYALEALKQVPD---ITLYGPGIP-HQAGIVSFTLKDVHPHDIAQLLDREGVAV 363 HE ELT++ ++ L+ + I GP P + GIVS T P ++ LLDR G+AV Sbjct: 303 HEDELTSHTMKLLEPLYSEGLIRYVGPDKPGERHGIVSITTHLKSPDELGLLLDRRGIAV 362 Query: 364 RAGHHCAQPAMRKLGVP-ATARASFGLYTTKEEIDILVSSLIKV 406 R G HCA + + ASF +Y KE+ + L +L ++ Sbjct: 363 RTGLHCAHILHDHVDASMGSVWASFYIYNCKEDAERLAEALEEI 406 >gi|118431577|ref|NP_148146.2| aminotransferase [Aeropyrum pernix K1] Length = 391 Score = 74.7 bits (182), Expect = 4e-15 Identities = 99/417 (23%), Positives = 165/417 (39%), Gaps = 52/417 (12%) Query: 6 GYHVEALRAEFPILSRRMGGRPLVYLDNAATTQRPSRVIEAMRSYAREHHANVHRGLHTL 65 G + +R PI SR+ VYLD A V +A+ + ++ Sbjct: 3 GSWLREVRERIPIFSRK------VYLDTAGAGPLTLDVKDAVEGFLELWNSEGEPW---- 52 Query: 66 SVEATSLYEEARREVARFIGAGSEREIVFTRNATEAINLVAHTWAEAFLEPGDVVVLSEM 125 EA E+RR A+ +GA E E+ T +N + L P VV+SE Sbjct: 53 -GEALDDILESRRLFAQMVGAKVE-EVAAVPGVTYGLNAFLSSLK---LPPDSNVVVSET 107 Query: 126 EHHSNLIPWQLLARRKGVQLAFLPFDENGMLDLASLDELWTERVKLVSLVHVSNVFGTVN 185 + + + +ARR ++ + +G + L + L + +V + VS + G Sbjct: 108 NFPTGVYTFHAMARRGLIREVRIASASDGCVGLDGFERLIDDSTSIVYVDMVSWITGCRE 167 Query: 186 PVEEIVEYAHRRGALVLLDGAQAVPHLPISIEALGCDFLAFSGHK--MYGPMGIGVLYAR 243 + + E AH GAL++ D A PI ++ LG D AF+G + G G G Y Sbjct: 168 DLRTLAELAHSHGALMVSDVFHAAGVYPIDVKKLGLD-AAFTGSYKWLLGLHGGGFAYVS 226 Query: 244 EELLEAMPPFLGG---------GEMIRSVTLETATWNEVPHK-------FEAGTPNVEGA 287 EELL ++ P G M R L + +N + E GT Sbjct: 227 EELLPSLEPMFSGWMAIDDSVMERMARGDPLFSRPFNVREFRRASDAKVLEWGTWPAIAF 286 Query: 288 VGLAEAVRFLREVGMEAV-AAHERELTAYALEALKQVPDITLYGPGIPHQAGIVSFTLKD 346 V L +++ L + A+H L +++L + T+ G+ AGIV F + Sbjct: 287 VSLKASLKMLSAYDAPGLYASHTGRLVKRLIDSLTDMGVETVTPRGM--AAGIVVF--RH 342 Query: 347 VHPHDIAQLLDREGVAVRAGHHCAQPAMRKLGVPATARASFGLYTTKEEIDILVSSL 403 HP + + L+ G+ P + R S Y ++E+++ L+ +L Sbjct: 343 RHPERLGRFLESRGIVASVR-------------PGSVRVSIHFYNSREDVEALLRAL 386 >gi|118430843|ref|NP_146906.2| pyridoxal-dependent decarboxylase [Aeropyrum pernix K1] Length = 464 Score = 42.0 bits (97), Expect = 3e-05 Identities = 86/347 (24%), Positives = 133/347 (38%), Gaps = 64/347 (18%) Query: 94 FTRNATEAINLVA----HTWAEAFLEPGDVVVLSEMEHHSNLIPWQLLARRKGVQLAFLP 149 FT TE+I L W A +V+ H + LL G+++ +P Sbjct: 85 FTYGGTESIILAVLAARERWRRAGKSGAGKIVMPITAHPAFAKAAYLL----GLKVERVP 140 Query: 150 FDENGM-LDLASLDELWTERVKLVSLVHVSNVFGTVNPVEEIVEYAHRR----------G 198 D + D A ++E ++ V +G+++PVE++ + A R G Sbjct: 141 VDSVTLQADPAIIEEKIDRDTVMIVASAVDYPYGSLDPVEDLGDIAAARDVWLHVDACIG 200 Query: 199 ALVLL---DGAQAVPHLPISIEALGCDFLAFSGHKM-YGPMGIGVLYAREELLEAMPPFL 254 +VL D + V +E G + HK Y P G +L R + F+ Sbjct: 201 GMVLAFASDAGEEVGKFDFGVE--GVRSFSVDMHKYGYAPKGSSILLFRRARDKKPTIFV 258 Query: 255 G----GGEMIRSVTLETATWNEVPHKFEAGTPNVEGAVGLAEAVRFLREVGMEAVAAHER 310 G ++ L T + AGT LA A R +G+E R Sbjct: 259 DSSWPGYPLVNQAILSTRS---------AGT--------LAAAWAVARTLGVEGY----R 297 Query: 311 ELTAYALEALKQVP----DITLYGPGIPHQAGIVSFTLKDVHPHDIAQLLDREGVAVRAG 366 EL LEA +++ + L G P +AGI+SFT D+ ++A L R G V+ Sbjct: 298 ELAGMVLEARRRIQKGLESLGLEVLGRP-KAGILSFTDSDIDVVEVATRLGRAGWVVQ-- 354 Query: 367 HHCAQPAMRKLGVPATARASFGLYTTKEEIDILVSSLIKVQEFFRHA 413 QP + LG P S L + ++ S L V+E R A Sbjct: 355 ---LQPGNKHLGFP----TSIHLTISPIHARVVDSFLAAVEESIRGA 394 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 428,963 Number of Sequences: 1700 Number of extensions: 19796 Number of successful extensions: 83 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 78 Number of HSP's gapped (non-prelim): 3 length of query: 413 length of database: 492,079 effective HSP length: 79 effective length of query: 334 effective length of database: 357,779 effective search space: 119498186 effective search space used: 119498186 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718282|ref|YP_003873814.1| hypothetical protein STHERM_c05760 [Spirochaeta thermophila DSM 6192] (146 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 145,803 Number of Sequences: 1700 Number of extensions: 5795 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 146 length of database: 492,079 effective HSP length: 69 effective length of query: 77 effective length of database: 374,779 effective search space: 28857983 effective search space used: 28857983 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718283|ref|YP_003873815.1| hypothetical protein STHERM_c05770 [Spirochaeta thermophila DSM 6192] (306 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.138 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 258,428 Number of Sequences: 1700 Number of extensions: 9787 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 306 length of database: 492,079 effective HSP length: 77 effective length of query: 229 effective length of database: 361,179 effective search space: 82709991 effective search space used: 82709991 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718284|ref|YP_003873816.1| DHH superfamily protein, subfamily 1 [Spirochaeta thermophila DSM 6192] (323 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 315,952 Number of Sequences: 1700 Number of extensions: 13937 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 323 length of database: 492,079 effective HSP length: 77 effective length of query: 246 effective length of database: 361,179 effective search space: 88850034 effective search space used: 88850034 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718285|ref|YP_003873817.1| hypothetical protein STHERM_c05790 [Spirochaeta thermophila DSM 6192] (132 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.143 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 137,648 Number of Sequences: 1700 Number of extensions: 5446 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 132 length of database: 492,079 effective HSP length: 68 effective length of query: 64 effective length of database: 376,479 effective search space: 24094656 effective search space used: 24094656 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718286|ref|YP_003873818.1| short chain dehydrogenase/reductase family oxidoreductase [Spirochaeta thermophila DSM 6192] (229 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum... 64 4e-12 >gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum pernix K1] Length = 250 Score = 63.5 bits (153), Expect = 4e-12 Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 9/191 (4%) Query: 4 LVTGARRGLGRALVETFLERGHSVHALGRS----LSKELEALVEAHPDRCFFYAVDVTEE 59 LVTG RG+GRA V F G SV +S K E + VDV + Sbjct: 7 LVTGGSRGIGRATVLRFAREGWSVVIAYKSRADLAEKTAEEARRLGSPEAYTVRVDVGDP 66 Query: 60 SQLEAVRREVGERVDAIDILVNNAGVHLEQDRPDLSRVDFSVYLPTFLTNSVAPLMVIRA 119 + + VGE + +++LVN AGV + S + T N +V + Sbjct: 67 DSVTEMSSRVGELIPHLNVLVNAAGV---LQLGGIEETSISEWEETLRVNLTGVYLVTKL 123 Query: 120 FLDLILRSPRKWIANISSEAGSIGNCWRESEYSYCMSKAALNMATRILQNRLGKEGAVVR 179 L L+ ++ I N++S AG GN + +Y SKA + T+ L +L G V Sbjct: 124 LLPLLRKAKWASIVNVASIAGETGNV--VAGVAYSASKAGVIGLTKRLAVQLAGYGIRVN 181 Query: 180 SIHPGWFSSDM 190 ++ P + +DM Sbjct: 182 AVAPSFVETDM 192 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 210,594 Number of Sequences: 1700 Number of extensions: 8041 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 1 length of query: 229 length of database: 492,079 effective HSP length: 74 effective length of query: 155 effective length of database: 366,279 effective search space: 56773245 effective search space used: 56773245 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718287|ref|YP_003873819.1| ATP-dependent protease La [Spirochaeta thermophila DSM 6192] (793 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431491|ref|NP_147997.2| replication factor C small subunit... 46 4e-06 gi|118431810|ref|NP_148510.2| hypothetical protein APE_2279.1 [A... 43 3e-05 gi|14601365|ref|NP_147901.1| cell division protein CDC48 [Aeropy... 43 3e-05 >gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1] Length = 325 Score = 45.8 bits (107), Expect = 4e-06 Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 38/144 (26%) Query: 303 IVDLPWTERTTDSKDIRRAQEILDEDHYDLVKVKERILEFIAVRQLSEESRGPILCFVGP 362 ++++ W E+ R +I+D+ H V ER+ +F+ R + P L F GP Sbjct: 4 VLEMLWVEKYRP----RSLDDIVDQKH-----VVERLKQFVKQRNM------PHLLFAGP 48 Query: 363 PGTGKTSLGRSLARAL-GRNF----VRMSLGGVRDEAEIRGHRKTYVAA-----LPGKII 412 PGTGKT+ +LA L G N+ + ++ R IR K + + +P KI+ Sbjct: 49 PGTGKTTAAHALAHDLFGENYRQYMLELNASDERGINVIREKVKEFARSRTPPEIPFKIV 108 Query: 413 QTMKKAGSINPVFLLDEIDKMSSD 436 LLDE D M+SD Sbjct: 109 -------------LLDEADNMTSD 119 >gi|118431810|ref|NP_148510.2| hypothetical protein APE_2279.1 [Aeropyrum pernix K1] Length = 634 Score = 43.1 bits (100), Expect = 3e-05 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 1/103 (0%) Query: 673 SRRDIHIHVPEGAIPKDGPSAGITLTAAMLSVLTGIPPRHDVAITGEITLTGRILPVGGI 732 S D + + +I GPSAG+ + A S+LT A TG I + PVGG+ Sbjct: 94 SSLDFYYVLESKSIVVGGPSAGLAMALATYSLLTTGSCLDGYAATGMILPDTSVGPVGGL 153 Query: 733 KEKVLAAHRHDIPSVLLPKENEKDLTDVPREVRQRLSFVFVES 775 KEK+ AA L+P EK T + R+V + V + S Sbjct: 154 KEKLEAAASSGAKVFLIPHGQEK-YTYIARKVERNGPIVRIVS 195 >gi|14601365|ref|NP_147901.1| cell division protein CDC48 [Aeropyrum pernix K1] Length = 726 Score = 43.1 bits (100), Expect = 3e-05 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 19/126 (15%) Query: 318 IRRAQEILDEDHYDLVKVKERILEFIAV--------RQLSEESRGPILCFVGPPGTGKTS 369 +R ++ ED DL + KERI E + + + L E IL + GPPGTGKT Sbjct: 175 LRGVPKVTWEDIGDLEEAKERIREIVELPMKHPEIFKHLGIEPPKGILLY-GPPGTGKTL 233 Query: 370 LGRSLARALGRNFVRMSLGGVRDEAEIRGHRKTYVAALPGKIIQTMKKAGSINP-VFLLD 428 L ++LA +G F+ S+ G ++ G + ++ + K+A P + +D Sbjct: 234 LAKALANEIGAYFI--SINGPEIMSKYYGESEQ-------RLREIFKEAEENAPSIIFID 284 Query: 429 EIDKMS 434 EID ++ Sbjct: 285 EIDAIA 290 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 790,516 Number of Sequences: 1700 Number of extensions: 36184 Number of successful extensions: 182 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 178 Number of HSP's gapped (non-prelim): 5 length of query: 793 length of database: 492,079 effective HSP length: 84 effective length of query: 709 effective length of database: 349,279 effective search space: 247638811 effective search space used: 247638811 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718288|ref|YP_003873820.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Spirochaeta thermophila DSM 6192] (412 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 354,189 Number of Sequences: 1700 Number of extensions: 13876 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 0 length of query: 412 length of database: 492,079 effective HSP length: 79 effective length of query: 333 effective length of database: 357,779 effective search space: 119140407 effective search space used: 119140407 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718289|ref|YP_003873821.1| ATP-dependent Clp protease proteolytic subunit [Spirochaeta thermophila DSM 6192] (206 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 210,336 Number of Sequences: 1700 Number of extensions: 8673 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 206 length of database: 492,079 effective HSP length: 73 effective length of query: 133 effective length of database: 367,979 effective search space: 48941207 effective search space used: 48941207 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718290|ref|YP_003873822.1| trigger factor [Spirochaeta thermophila DSM 6192] (450 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.134 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 420,311 Number of Sequences: 1700 Number of extensions: 19225 Number of successful extensions: 84 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84 Number of HSP's gapped (non-prelim): 0 length of query: 450 length of database: 492,079 effective HSP length: 80 effective length of query: 370 effective length of database: 356,079 effective search space: 131749230 effective search space used: 131749230 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718291|ref|YP_003873823.1| hypothetical protein STHERM_c05900 [Spirochaeta thermophila DSM 6192] (158 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.135 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 168,011 Number of Sequences: 1700 Number of extensions: 6714 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 158 length of database: 492,079 effective HSP length: 70 effective length of query: 88 effective length of database: 373,079 effective search space: 32830952 effective search space used: 32830952 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718292|ref|YP_003873824.1| shikimate kinase [Spirochaeta thermophila DSM 6192] (182 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 215,973 Number of Sequences: 1700 Number of extensions: 10749 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 182 length of database: 492,079 effective HSP length: 71 effective length of query: 111 effective length of database: 371,379 effective search space: 41223069 effective search space used: 41223069 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718293|ref|YP_003873825.1| chorismate synthase [Spirochaeta thermophila DSM 6192] (351 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600808|ref|NP_147331.1| chorismate synthase [Aeropyrum pern... 286 7e-79 >gi|14600808|ref|NP_147331.1| chorismate synthase [Aeropyrum pernix K1] Length = 380 Score = 286 bits (731), Expect = 7e-79 Identities = 157/359 (43%), Positives = 221/359 (61%), Gaps = 15/359 (4%) Query: 4 NSFGTLFRITTFGESHGHAVGVIVDGVPPLLDLSEEDIQKELDRRKPGQSEVGTPRKESD 63 +S G +FR++ FGESHG VG +V GVPP L++ E I +EL+RR+PG +PR+E+D Sbjct: 5 DSLGEVFRVSIFGESHGPGVGALVTGVPPGLEVDEAYINRELERRRPG-GPYASPRREAD 63 Query: 64 IVHIYSGVFQGKTTGTPLMMILYNQDTRPGDYEAIARLFRPGHADYTYHKKYR-IRDYRG 122 V I SGVF+G+TTG P+++ + N D +PG YE RPGHADY +++Y +DYRG Sbjct: 64 RVEILSGVFRGRTTGAPILLFIRNVDVKPGFYEEFRYKPRPGHADYVAYERYLGHQDYRG 123 Query: 123 SGRASGRETXXXXXXXXXXKKILAQRGISIIAYTLRAAGIQCRTFDPV-------VIEKN 175 G SGR T K +LA+ G+ + AY G++ R +P I+++ Sbjct: 124 GGIFSGRRTAALVAAGAIAKLVLARYGVRVYAYVKSIGGVEARV-EPRDSEEFRRAIDRD 182 Query: 176 PMRACDPEAAEKMVERIRTIKEETDSVGGIVECRIRGVPPGLGEPVFDKLDADLAKAMLS 235 P++ DPEA+E+M + + E DS+G +VE VPPGLG+P +DA LA+A+++ Sbjct: 183 PLKCPDPEASERMRRLVEEARREGDSLGSVVEAVAFNVPPGLGDPPLGGVDALLARAVMA 242 Query: 236 IGAVKGIEFGAGFRAADMRGSEHNDQMNAQG----FLTNNAGGILGGISTGEEIVFRVVV 291 I A K +EFG GF A MRGSE +D A G TN +GGI+GG++ G IVFRV Sbjct: 243 IPAAKAVEFGEGFALAFMRGSEAHDSPRAVGGRIVHETNRSGGIVGGLTNGMPIVFRVAF 302 Query: 292 KPTSSIARPQRTIDIDG-NETEIITEGRHDACICPRIVPVVEAMAAIVIEDHYKRQEAM 349 KP SSI +P+RT+D+ E + +GRHD I PR PVVEA+ AIV+ D +EA+ Sbjct: 303 KPPSSIPKPRRTVDLRSLGEAWVSGKGRHDPVIGPRAAPVVEAVTAIVLADLLLLREAL 361 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 377,666 Number of Sequences: 1700 Number of extensions: 17343 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 1 length of query: 351 length of database: 492,079 effective HSP length: 78 effective length of query: 273 effective length of database: 359,479 effective search space: 98137767 effective search space used: 98137767 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718294|ref|YP_003873826.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (225 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 202,845 Number of Sequences: 1700 Number of extensions: 7847 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 0 length of query: 225 length of database: 492,079 effective HSP length: 74 effective length of query: 151 effective length of database: 366,279 effective search space: 55308129 effective search space used: 55308129 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718295|ref|YP_003873827.1| hypothetical protein STHERM_c05940 [Spirochaeta thermophila DSM 6192] (391 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 355,761 Number of Sequences: 1700 Number of extensions: 15328 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 391 length of database: 492,079 effective HSP length: 79 effective length of query: 312 effective length of database: 357,779 effective search space: 111627048 effective search space used: 111627048 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718296|ref|YP_003873828.1| ornithine carbamoyltransferase [Spirochaeta thermophila DSM 6192] (358 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431681|ref|NP_148311.2| ornithine carbamoyltransferase [Ae... 221 2e-59 gi|118431549|ref|NP_148085.2| aspartate carbamoyltransferase cat... 62 3e-11 >gi|118431681|ref|NP_148311.2| ornithine carbamoyltransferase [Aeropyrum pernix K1] Length = 314 Score = 221 bits (563), Expect = 2e-59 Identities = 134/323 (41%), Positives = 184/323 (56%), Gaps = 23/323 (7%) Query: 33 LAGRSFLSLFDFTPEEIRYLLRLSHELKXXXXXXXXXXXXXXXHVV-LIFEKTSTRTRCA 91 L GR L L D+T EEIR+++ L+ E+K V L+FEK STRTR + Sbjct: 6 LRGRHLLWLADYTGEEIRHMVELTLEMKRRYYAGERVIPVLRGRSVGLLFEKPSTRTRIS 65 Query: 92 FEVAAADEGAHVTFLTNS--QLGKKESLEDTARVLGRFYDGIGFRGYAQETVEALARYSG 149 EVA A G H ++T S QLG+ E++ DTARVL R+ D I R + +T+E +AR++ Sbjct: 66 LEVAVAQLGGHTVYMTPSETQLGRGETVADTARVLSRYLDAIVARVRSHKTLEEMARHAS 125 Query: 150 VPVWNGLTDECHPTQALADVMTIEEYVRKPLSQVRLVFVGDARNNVARSLLVISAKLGMH 209 +PV NGL+D HP QA+AD+ TI E + L V+L FVGD +NV SLL+ +KLG+H Sbjct: 126 IPVINGLSDLTHPLQAIADMATILE-KKGRLEGVKLAFVGDGADNVLHSLLLAGSKLGLH 184 Query: 210 FVAVCPPALSPDEEFLARAEEVARGTGARIEI-TDDLDGVEGADALYTDVWVSMGXXXXX 268 PP + PDE L+ A + A +G +EI +D + V GAD +YTDVWVSMG Sbjct: 185 ITVATPPQIRPDERILSIALKAAEESGGSVEIVSDPYEAVRGADVVYTDVWVSMGQESMA 244 Query: 269 XXXXXXXXPYRVDMALVERTGNPEVLFLHCLPSFHDTNTEMGRLVYERFGIKEMEVSDEV 328 PY+V+ L+E TG +F+HCLP+ + EV+DEV Sbjct: 245 EEKVQLLKPYQVNAKLMEATGG-RAIFMHCLPA-----------------KRGQEVTDEV 286 Query: 329 FRSRHSVVFEEAENRLHTIKAVM 351 S V+++AENRLH KAV+ Sbjct: 287 IDGPWSAVWDQAENRLHAHKAVL 309 >gi|118431549|ref|NP_148085.2| aspartate carbamoyltransferase catalytic subunit [Aeropyrum pernix K1] Length = 308 Score = 61.6 bits (148), Expect = 3e-11 Identities = 72/290 (24%), Positives = 113/290 (38%), Gaps = 17/290 (5%) Query: 35 GRSFLSLFDFTPEEIRYLLRLSHELKXXXXXXXXXXXXXXXHVVLIFEKTSTRTRCAFEV 94 GR +S+ DFT ++ L R + ++ V L F + STRTR +FE Sbjct: 8 GRDVISITDFTRGDLELLFRQADVIESKAGSKPLDGKV----VALAFFEPSTRTRLSFET 63 Query: 95 AAADEGAHVTFLTNSQ---LGKKESLEDTARVLGRFYDGIGFRGYAQETVEALARYSGVP 151 A G ++ + + K E+L DT +L + D I R + A + P Sbjct: 64 AVKRLGGSTLLISGEEAISVAKGENLADTITMLDSYADAIVIRHRYEGAALYAAEVAEKP 123 Query: 152 VWNGLTD-ECHPTQALADVMTIEEYVRKPLSQVRLVFVGDARNNVARSLLVISAKL--GM 208 V NG + HPTQA+ D+ T+ + + + +GD R A S ++ L Sbjct: 124 VINGGDGRQHHPTQAMLDLYTVYS-LFGTVDGLTYGVLGDLRYGRAASSFILGLSLFNPR 182 Query: 209 HFVAVCPPALSPDEEFLARAEEVARGTG-ARIEITDDLDGVEGADALYTDVWVSMGXXXX 267 H + PP L E L E+ RG +E D+ G D LY + Sbjct: 183 HVYLISPPQLRARREVLEALEK--RGVPYTEVERLQDVLG--ELDVLYV-TRIQKERIPD 237 Query: 268 XXXXXXXXXPYRVDMALVERTGNPEVLFLHCLPSFHDTNTEMGRLVYERF 317 YRV + L+E + LH LP + + + Y+ + Sbjct: 238 PREYESLRGSYRVTLDLLESFAKESLKVLHPLPRVDEIDFSVDSSRYQAY 287 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 307,537 Number of Sequences: 1700 Number of extensions: 12086 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 2 length of query: 358 length of database: 492,079 effective HSP length: 78 effective length of query: 280 effective length of database: 359,479 effective search space: 100654120 effective search space used: 100654120 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718297|ref|YP_003873829.1| transporter [Spirochaeta thermophila DSM 6192] (552 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 416,962 Number of Sequences: 1700 Number of extensions: 15411 Number of successful extensions: 84 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84 Number of HSP's gapped (non-prelim): 0 length of query: 552 length of database: 492,079 effective HSP length: 81 effective length of query: 471 effective length of database: 354,379 effective search space: 166912509 effective search space used: 166912509 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718298|ref|YP_003873830.1| hypothetical protein STHERM_c05980 [Spirochaeta thermophila DSM 6192] (216 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.143 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 212,898 Number of Sequences: 1700 Number of extensions: 8778 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 216 length of database: 492,079 effective HSP length: 73 effective length of query: 143 effective length of database: 367,979 effective search space: 52620997 effective search space used: 52620997 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718299|ref|YP_003873831.1| AAA ATPase [Spirochaeta thermophila DSM 6192] (745 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431491|ref|NP_147997.2| replication factor C small subunit... 64 2e-11 gi|118431492|ref|NP_147998.2| replication factor C large subunit... 55 5e-09 gi|118431889|ref|NP_148637.2| cell division protein CDC48 [Aerop... 47 1e-06 gi|14601103|ref|NP_147630.1| hypothetical protein APE_0960 [Aero... 45 6e-06 gi|14601365|ref|NP_147901.1| cell division protein CDC48 [Aeropy... 44 2e-05 gi|14601782|ref|NP_148323.1| proteasome-activating nucleotidase ... 43 3e-05 >gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1] Length = 325 Score = 63.5 bits (153), Expect = 2e-11 Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 25/212 (11%) Query: 22 RMRPRTLDEFVGQEHILGPGRLLRRAIQADRLSSVIFYGPPGCGKTTLARVIAN-----H 76 + RPR+LD+ V Q+H++ L++ ++ + ++F GPPG GKTT A +A+ + Sbjct: 12 KYRPRSLDDIVDQKHVV---ERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGEN 68 Query: 77 TKSAFLSLNAV-LSGVQEVRAAI-EKARQEMAYHGRRTILFVDEVHRWNKAQQDALLPWV 134 + L LNA G+ +R + E AR I+ +DE Q AL + Sbjct: 69 YRQYMLELNASDERGINVIREKVKEFARSRTPPEIPFKIVLLDEADNMTSDAQQALRRLM 128 Query: 135 ENGTVILIGATTQNPYFEVNSALISRSRIFQLTPLTR----EHLRTIAERALKDPERGYG 190 E + + N ++ + SR F+ PL++ E LR IAE D E Sbjct: 129 ELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGVDYE---- 184 Query: 191 KYRIIMDDDALEHLITVADGDARTLLSAIELA 222 ++AL+ + +++GD R ++ ++ A Sbjct: 185 -------EEALDAIYEISEGDMRKAINVLQAA 209 >gi|118431492|ref|NP_147998.2| replication factor C large subunit [Aeropyrum pernix K1] Length = 479 Score = 55.5 bits (132), Expect = 5e-09 Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 16/215 (7%) Query: 18 PLAARMRPRTLDEFVGQEH---ILGPGRLLRRAIQADRLSSVIFYGPPGCGKTTLARVIA 74 P + RP+ +++ V Q+ IL P + + + YGPPG GKT+L IA Sbjct: 11 PWVIKYRPKRVEDVVNQDQAKKILVPWFKAWLEGRKPDKRAALLYGPPGVGKTSLVEAIA 70 Query: 75 NHTKSAFLSLNAV-LSGVQEVRAAIEKARQEMAYHGRRTILFVDEVHRWNKAQQ----DA 129 + + LNA ++ + A ++ + R ++ +DEV N + +A Sbjct: 71 SEFNLEMIELNASDYRRRSDIERIVGAASRKRSMFKRGVVILLDEVDGINPREDAGGIEA 130 Query: 130 LLPWVENGTVILIGATTQNPYFEVNSALISRSRIFQLTPLTREHLRTIAERALKDPERGY 189 LL ++ T I T +P+ + L S + + PLT H+ + +R + Sbjct: 131 LLSVIKT-TENPIVMTANDPWKDFLRPLREVSLMVEFRPLTLTHIVAVLQRICE------ 183 Query: 190 GKYRIIMDDDALEHLITVADGDARTLLSAIELAVE 224 RI + +AL ++ ++GD R+ ++ ++ E Sbjct: 184 -AERIECEREALRYIAERSEGDLRSAINDLQAVAE 217 >gi|118431889|ref|NP_148637.2| cell division protein CDC48 [Aeropyrum pernix K1] Length = 737 Score = 47.4 bits (111), Expect = 1e-06 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 27/114 (23%) Query: 56 VIFYGPPGCGKTTLARVIANHTKSAFLSLNA--VLS-----GVQEVRAAIEKARQEMAYH 108 ++ YGPPG GKT LA+ +AN + F+S+N ++S Q +R E+A++ Sbjct: 225 ILLYGPPGTGKTLLAKAVANEADAYFISINGPEIMSKYYGESEQRLREIFEEAKKNAP-- 282 Query: 109 GRRTILFVD--------------EVHRWNKAQQDALLPWVE-NGTVILIGATTQ 147 +I+F+D EV R AQ AL+ +E G VI+I AT + Sbjct: 283 ---SIIFIDEIDAIAPKRDEVVGEVERRVVAQLLALMDGLEARGNVIVIAATNR 333 >gi|14601103|ref|NP_147630.1| hypothetical protein APE_0960 [Aeropyrum pernix K1] Length = 384 Score = 45.1 bits (105), Expect = 6e-06 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 8/71 (11%) Query: 56 VIFYGPPGCGKTTLARVIANHTKSAFLSLNA--VLS-----GVQEVRAAIEKARQEMAYH 108 ++ YGPPG GKT LA +AN FL ++A ++S G + V+ AR + A Sbjct: 148 ILLYGPPGTGKTMLASAVANEIDGEFLYVDAANIMSKWLGEGEKNVKKLFNYARNK-AKE 206 Query: 109 GRRTILFVDEV 119 G+ ++F+DEV Sbjct: 207 GKPVVIFIDEV 217 >gi|14601365|ref|NP_147901.1| cell division protein CDC48 [Aeropyrum pernix K1] Length = 726 Score = 43.5 bits (101), Expect = 2e-05 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 27/114 (23%) Query: 56 VIFYGPPGCGKTTLARVIANHTKSAFLSLNA--VLS-----GVQEVRAAIEKARQEMAYH 108 ++ YGPPG GKT LA+ +AN + F+S+N ++S Q +R ++A + Sbjct: 221 ILLYGPPGTGKTLLAKALANEIGAYFISINGPEIMSKYYGESEQRLREIFKEAEENAP-- 278 Query: 109 GRRTILFVDEVHRWNKAQQDA-----------LLPWV----ENGTVILIGATTQ 147 +I+F+DE+ +++ LL + E G VI+IGAT + Sbjct: 279 ---SIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKERGRVIVIGATNR 329 >gi|14601782|ref|NP_148323.1| proteasome-activating nucleotidase [Aeropyrum pernix K1] Length = 409 Score = 42.7 bits (99), Expect = 3e-05 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 12/83 (14%) Query: 44 LRRAIQADRLSSVIFYGPPGCGKTTLARVIANHTKSAFLSL-------NAVLSGVQEVRA 96 L R + D V+ +GPPG GKT LA+ +A T++ F+ + + G + VR Sbjct: 164 LFRELGIDPPKGVLLHGPPGTGKTLLAKAVAGETEATFIRVVGSELVNKFIGEGARLVRE 223 Query: 97 AIEKARQEMAYHGRRTILFVDEV 119 AR++ +ILF+DE+ Sbjct: 224 IFRLAREKAP-----SILFIDEI 241 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 765,015 Number of Sequences: 1700 Number of extensions: 34167 Number of successful extensions: 173 Number of sequences better than 1.0e-04: 6 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 169 Number of HSP's gapped (non-prelim): 9 length of query: 745 length of database: 492,079 effective HSP length: 84 effective length of query: 661 effective length of database: 349,279 effective search space: 230873419 effective search space used: 230873419 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718300|ref|YP_003873832.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6192] (646 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 685,548 Number of Sequences: 1700 Number of extensions: 31777 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 0 length of query: 646 length of database: 492,079 effective HSP length: 83 effective length of query: 563 effective length of database: 350,979 effective search space: 197601177 effective search space used: 197601177 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718301|ref|YP_003873833.1| hypothetical protein STHERM_c06010 [Spirochaeta thermophila DSM 6192] (195 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431493|ref|NP_148000.2| CDP-alcohol phosphatidyltransferas... 45 1e-06 >gi|118431493|ref|NP_148000.2| CDP-alcohol phosphatidyltransferase [Aeropyrum pernix K1] Length = 194 Score = 45.1 bits (105), Expect = 1e-06 Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 9/104 (8%) Query: 28 PEWVPTSPWLALGLVWVLYLVMEFSDLFDGMVARSTGTVSDLGKVLDPFADVVARLTYFL 87 P W+ SP +L L+ + L+ D DG VAR TG VS LG LD D ++ Y Sbjct: 46 PAWLYISPVASLLLIALSLLL----DAVDGAVARFTGRVSPLGSFLDSSLDRISDSLYHA 101 Query: 88 CFVEAGIMPAWVFLLVLYRELAMTFLRMMLARKGIALGAKTGGK 131 AG+ P + + +L L + +LR KG +LG + G+ Sbjct: 102 TLYIAGVHPL-IVIAMLSGGLIVPYLR----AKGESLGLEVRGR 140 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.142 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 173,889 Number of Sequences: 1700 Number of extensions: 6651 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 1 length of query: 195 length of database: 492,079 effective HSP length: 72 effective length of query: 123 effective length of database: 369,679 effective search space: 45470517 effective search space used: 45470517 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718302|ref|YP_003873834.1| hypothetical protein STHERM_c06020 [Spirochaeta thermophila DSM 6192] (350 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431789|ref|NP_148480.2| NAD-dependent alcohol dehydrogenas... 102 2e-23 gi|118431384|ref|NP_147821.2| zinc-binding dehydrogenase [Aeropy... 92 1e-20 gi|118431506|ref|NP_148020.2| alcohol dehydrogenase [Aeropyrum p... 62 2e-11 >gi|118431789|ref|NP_148480.2| NAD-dependent alcohol dehydrogenase [Aeropyrum pernix K1] Length = 344 Score = 102 bits (253), Expect = 2e-23 Identities = 84/327 (25%), Positives = 150/327 (45%), Gaps = 24/327 (7%) Query: 33 RHEVLIRVHRAGICGSDLHIYEGSNPFVSYPRIP---GHELAGEIVSWGSEVRDAPPPGT 89 R +V++R+ AG+C +DLH+ +G + P++P GHE G I V + G Sbjct: 26 RFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGV-EGLEKGD 84 Query: 90 KVVVDPVISCGKCIACRMGHPNVCCDLQVVGVHRDGSFAPYLVVPAANVYPIPEHLTWNE 149 V++ P ++ G C+ACR G C +L+ G++ DG FA ++ +V +P+ ++ + Sbjct: 85 PVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISREK 144 Query: 150 AVFIEPYSIAANVRHRL------QVTPDDXXXXXXXXXXXXXXXQAIR-LTGARTIICDI 202 V + P + A +R + P Q ++ +T A I D+ Sbjct: 145 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV 204 Query: 203 SEPALERARRMGAEETINTEGRDLADAVLAYTGGEGPTAVVDAVGAPSLFESIVRSCAPG 262 E L+ A R+GA+ ++ RD V+ T G G +D VG+ + + Sbjct: 205 KEEKLKLAERLGADHVVDAR-RDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM 263 Query: 263 ARIVLLGFSS---VPTPVRQSEIIRKELSILGSRLNNR-RFPEVVSWFAEGKIDPTPLFV 318 R++++G+ PT +I E+S GS + N E+V+ +GK+ + V Sbjct: 264 GRLIIVGYGGELRFPT----IRVISSEVSFEGSLVGNYVELHELVTLALQGKV---RVEV 316 Query: 319 GEYSLKEAPSLLDRISKERALPGKLIL 345 + L E +L+R+ K L G+ +L Sbjct: 317 DIHKLDEINDVLERLEKGEVL-GRAVL 342 >gi|118431384|ref|NP_147821.2| zinc-binding dehydrogenase [Aeropyrum pernix K1] Length = 326 Score = 92.4 bits (228), Expect = 1e-20 Identities = 77/325 (23%), Positives = 129/325 (39%), Gaps = 16/325 (4%) Query: 10 MRVLIINAPHRAVLEERPIPHPARHEVLIRVHRAGICGSDLHIYEGSNPFVSYPRIPGHE 69 MR ++ P +E+ P P L+R GICG+D Y G+ P P +PGHE Sbjct: 1 MRAAVLYGPGDVRVEDLPPPEQPEGWALVRSRAVGICGTDKAFYRGTYPLFKKPLVPGHE 60 Query: 70 LAGEIVSWGSEVRDAPPPGTKVVVDPVISCGKCIACRMGHPNVCCDLQVVGVHRDGSFAP 129 ++GE+V ++ G++VV + +C +C CR G C + +G+ DG A Sbjct: 61 VSGEVVEGPEDL-----VGSRVVSEINFACLRCEVCREGLYTHCPRKKTLGIDFDGGMAE 115 Query: 130 YLVVPAANVYPIPEHLTWNEAVFIEPYSIAANVRHRLQVTPDDXXXXXXXXXXXXXXXQA 189 Y P ++ P ++ +A EP + N + P Q Sbjct: 116 YFTAPPWALH--PHNMPHEKAFAAEPLAAVLNALQQAPPRPGWAVAVLGTGFMAHLTAQT 173 Query: 190 IRLTGAR-TIICDISEPALERARRMGAEETINTEGRDLADAVLAYTGGEGPTAVVDAVGA 248 + G + I+ P RR+G E E A GG G V + G+ Sbjct: 174 LTAYGFKPAIVARPDSPKAVFFRRLGLEVLTPEEA---VKAASETPGGLGFHMVFETTGS 230 Query: 249 PSLFESIVRSCAPGARIVLLGFSSVPTPVRQSEIIRKELSILGSRL-NNRRFPEVVSWFA 307 P + + Q+ + KE+ ++G+R ++R F E + Sbjct: 231 NQGLSIATALARPRGVVHVKSTPGGEAVFSQTLAVVKEIRLIGTRCGSHREFKEALRLLE 290 Query: 308 EGKIDPTPLFVGEY-SLKEAPSLLD 331 G+++P V ++ SL+EAP + Sbjct: 291 SGEVEPQ---VTKFRSLEEAPEAFE 312 >gi|118431506|ref|NP_148020.2| alcohol dehydrogenase [Aeropyrum pernix K1] Length = 312 Score = 62.0 bits (149), Expect = 2e-11 Identities = 86/336 (25%), Positives = 142/336 (42%), Gaps = 57/336 (16%) Query: 23 LEERPIPHPARHEVLIRVHRAGICGSDLHIYEGSNPFVSYPRIPGHELAGEIVSWGSEVR 82 LEE + P V + V G+CG DL +++G P + P + GHE+ G + Sbjct: 19 LEEYEV-EPPEGWVPVEVRSVGMCGRDLVVWKGGFPNLKPPLVLGHEVFG--------LH 69 Query: 83 DAPPPGTKVVVDPVISCGKCIACRMGHPNVCCDLQVVGVHRDGSFAPYLVVPAANVYPIP 142 D P V V P I+ C P+ C ++G + G +A + VP N+ P+P Sbjct: 70 DGRP----VSVYPAIAVPGC-------PD--CPPSILGENLPGGYAERVYVPRENLIPLP 116 Query: 143 E-------HLTWNEAVFIEPYSIAA-NVRHRLQVTPDDXXXXXXXXXXXXXXXQAIRLTG 194 + T A + S+A+ R+ VT Q ++L G Sbjct: 117 DTDFNKYAAATCGVATMMHAASVASVRPGERVLVT-------GASGGVALHGIQYLQLLG 169 Query: 195 ARTIICDISEPALERARRMGAEETINTEGRDLADAVLAYTGGEGPTAVVDAVGAPSLFES 254 A + S E+AR + EE + E D Y V++ VGAP++ ES Sbjct: 170 AEVVAYTRSR---EKARVL--EEELGVEAVTSLD---FYRERGRVDVVMETVGAPTINES 221 Query: 255 IVRSCAPGARIVLLG-FSSVPTPV-RQSEIIRKELSILGSRLNNRR-FPEVVSWFAEGKI 311 +R+ P R+VL+G + P + R + ++ +E++I G+ R+ + + A+G + Sbjct: 222 -MRALRPRGRLVLIGNITGEPVTIKRPALLVMREITISGTAAFTRKEWEAAIKTIAKGGV 280 Query: 312 DPTPLFVGEYSLKEAPSLLDRISKERALPGKLILRL 347 P F Y L + + L + AL G I R+ Sbjct: 281 KP---FYKAYRLDQINNAL-----KEALQGARIGRI 308 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 371,020 Number of Sequences: 1700 Number of extensions: 17375 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 3 length of query: 350 length of database: 492,079 effective HSP length: 78 effective length of query: 272 effective length of database: 359,479 effective search space: 97778288 effective search space used: 97778288 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718303|ref|YP_003873835.1| flavodoxin [Spirochaeta thermophila DSM 6192] (168 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 144,713 Number of Sequences: 1700 Number of extensions: 4913 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 168 length of database: 492,079 effective HSP length: 71 effective length of query: 97 effective length of database: 371,379 effective search space: 36023763 effective search space used: 36023763 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718304|ref|YP_003873836.1| hypothetical protein STHERM_c06040 [Spirochaeta thermophila DSM 6192] (293 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 283,636 Number of Sequences: 1700 Number of extensions: 11682 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 293 length of database: 492,079 effective HSP length: 76 effective length of query: 217 effective length of database: 362,879 effective search space: 78744743 effective search space used: 78744743 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718305|ref|YP_003873837.1| transporter [Spirochaeta thermophila DSM 6192] (611 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 98 7e-22 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 89 3e-19 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 87 1e-18 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 84 1e-17 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 83 2e-17 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 82 4e-17 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 81 6e-17 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 80 1e-16 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 78 5e-16 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 78 5e-16 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 78 7e-16 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 77 9e-16 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 75 4e-15 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 75 4e-15 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 75 5e-15 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 75 6e-15 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 72 4e-14 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 72 5e-14 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 71 7e-14 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 69 3e-13 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 65 4e-12 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 64 8e-12 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 64 8e-12 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 64 1e-11 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 62 4e-11 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 62 5e-11 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 61 7e-11 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 60 1e-10 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 59 4e-10 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 57 1e-09 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 53 2e-08 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 46 3e-06 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 97.8 bits (242), Expect = 7e-22 Identities = 73/252 (28%), Positives = 120/252 (47%), Gaps = 14/252 (5%) Query: 363 HLTFGYDPARPVLRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKD 422 H ++G A LR ++ P S+ A++GP+G GKTT++ ++ P+ GR+ G D Sbjct: 12 HASYGEVEA---LRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFGGVD 68 Query: 423 TRTITRASLRSHMGMVLQDTHLFTD-TIRENIRYGRPDATDXXXXXXXXXXXXHHFIQHL 481 + R +G V QD LF T+ +N+ +G + Sbjct: 69 YTGLPPE--RRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWALETVGLT 126 Query: 482 PQGYDTLLTDRGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTL 541 P + R + LS GQ+Q + +ARA+ +P VL+LDE S +D + + L L+ L Sbjct: 127 PPR--EFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRL 184 Query: 542 MK--GRTSFVIAH-RLSTVREADLILVIREGRIVEQGTHEELMRRKGLYWQ---FHQHHQ 595 + G T + H + + AD ++++R+GRIV+ GT E+ R + F + Sbjct: 185 QRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEVYTRPANVYVATFFGDANI 244 Query: 596 DEAELPTPGAGG 607 EL TPG+GG Sbjct: 245 IPKELLTPGSGG 256 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 89.0 bits (219), Expect = 3e-19 Identities = 66/221 (29%), Positives = 112/221 (50%), Gaps = 12/221 (5%) Query: 374 VLRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYD-----PQEGRILLDGKDTRTITR 428 +L+ I+ A G++ AI+GP+G+GK+TL+ ++ R D EG + ++ + Sbjct: 20 ILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVMKEDP 79 Query: 429 ASLRSHMGMVLQDTHLFTD-TIRENIRYGRPDATDXXXXXXXXXXXXHHFIQ--HLPQGY 485 ++R + GMV Q+ + F TI EN+ G P ++ HL Sbjct: 80 YNIRRYTGMVFQEPNPFPHMTIYENVAIG-PKLHGLAKNKKELDEIVEWALKMAHLWDEV 138 Query: 486 DTLLTDRGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTLMKGR 545 L+D LS GQRQ L++ARA+ P VL+LDE T+++D + +++++ K Sbjct: 139 KDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKEE 198 Query: 546 --TSFVIAHR-LSTVREADLILVIREGRIVEQGTHEELMRR 583 T ++ H R +D IL + EGR++E G +EL+ R Sbjct: 199 MATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELVLR 239 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 87.0 bits (214), Expect = 1e-18 Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 16/222 (7%) Query: 375 LRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITRASLRSH 434 L + L+ G + ++GP G+GKTTLVN++ FY P GR+L G+D ++ + S Sbjct: 22 LDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLFKGRDITGMSPHEI-SK 80 Query: 435 MGMV--LQDTHLFTD-TIRENIRYGRPDATDXXXXXXXXXXXXHHFIQHLPQ-------- 483 +G+V Q FT+ T+ EN+ + F + Sbjct: 81 LGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWLGFEKRAAARAFEILGW 140 Query: 484 -GYDTLLTDRGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTLM 542 G D + R LS GQ +LL IARA++ ++I+DE + V+ R + + ++ L Sbjct: 141 VGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVNPRLAGSIMERIKYLA 200 Query: 543 --KGRTSFVIAHRLSTVRE-ADLILVIREGRIVEQGTHEELM 581 KG T +I HR+ V+E D + + G+++ G +E++ Sbjct: 201 REKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEVL 242 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 84.0 bits (206), Expect = 1e-17 Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 13/230 (5%) Query: 359 LTIEHLTFGYDPARPVLRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILL 418 L + L Y + VL+ + + G + I+GP+G+GK+TL+ + R +P G I+ Sbjct: 5 LEVRGLVVSYSGEK-VLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVF 63 Query: 419 DGKDTRTITRASL---RSHMGMVLQDTHLFTD-TIRENIRYGRPDATDXXXXXXXXXXXX 474 G D ++ + L R +G + Q LF T+ NI Y A Sbjct: 64 RGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKA-----LGLSRRDAE 118 Query: 475 HHFIQHLPQ-GYDTLLTDRGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERH 533 +++L G + L + LS GQ+Q +ARA+ +P +L+LDE TS++D + Sbjct: 119 ERAVKYLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRAD 178 Query: 534 LQKAL-RTLMKGRTSFVIAHRLS-TVREADLILVIREGRIVEQGTHEELM 581 + +AL R G+ V+ H V+ AD + + +G + E+G EL+ Sbjct: 179 VLEALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSELV 228 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 82.8 bits (203), Expect = 2e-17 Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 20/228 (8%) Query: 361 IEHLTFGYDPARPVLRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILL-- 418 +E + Y+ + PVLR ++ GSL+A++GP G+GKTTL+ LL P GR+ + Sbjct: 8 LEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEVCG 67 Query: 419 --DGKDTRTITRASLRSHMGMVLQDTH---LFTDTIRENIRYGRPDATDXXXXXXXXXXX 473 G+ R + A + L+ L+ + E + +GR D + Sbjct: 68 SPPGRVRRMLGYAPASPEVDPRLKAVEVALLYRYGVSEGVAWGRRDWEEVLAALG----- 122 Query: 474 XHHFIQHLPQGYDTLLTDRGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERH 533 G L R LS GQR+L+ +A + P + +LDE S +D R Sbjct: 123 --------EMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRR 174 Query: 534 LQKALRTLMKGRTSFVIAHRLSTVREADLILVIREGRIVEQGTHEELM 581 + LR+L T H AD ++++REG + QG E ++ Sbjct: 175 VTLVLRSLRGRATIVYTTHDPLAAMAADSVIMLREGLLHAQGPPEAVV 222 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 82.0 bits (201), Expect = 4e-17 Identities = 73/230 (31%), Positives = 107/230 (46%), Gaps = 42/230 (18%) Query: 375 LRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITRASLRSH 434 L+ ++ G + + +GP GAGKTT V +L DP G + G D R +R Sbjct: 28 LKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAGFDV-VKERWEVRKR 86 Query: 435 MGMVLQDTHLF--TDTIRENIRY-GRPDATDXXXXXXXXXXXXHHFIQHLPQG------- 484 +G++L F T REN+ Y GR I +PQG Sbjct: 87 IGVMLSVERGFYWKLTGRENLYYFGR--------------------IYGIPQGELKSRIK 126 Query: 485 --YDTL-LTDRGSS------LSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQ 535 D + LTD G + +S G + L +AR +L DP VLILDE T +D + R ++ Sbjct: 127 EVLDLVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIR 186 Query: 536 KALRTL-MKGRTSFVIAHRLSTVRE-ADLILVIREGRIVEQGTHEELMRR 583 +R+L +GRT F+ H + +D + +I GRI +GT +EL RR Sbjct: 187 GVIRSLASEGRTIFITTHNMVEAEMISDRVGIIIGGRIAMEGTPDELKRR 236 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 81.3 bits (199), Expect = 6e-17 Identities = 63/232 (27%), Positives = 109/232 (46%), Gaps = 11/232 (4%) Query: 359 LTIEHLTFGYDPARPVLRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILL 418 + +E ++ GY + L D++L+ P G + IVGP GAGK+TL+ + F +GR+L Sbjct: 6 IKLEDVSAGYGKLQ-TLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLF 64 Query: 419 DGKD-TRTITRASLRSHMGMVLQDTHLFTD-TIRENIRYGRPDATDXXXXXXXXXXXXHH 476 + D T + M + Q ++F + T+ EN+R D + Sbjct: 65 ENTDVTHMPPHDRAKIGMTFIFQLENIFRELTVYENLRLAGYDLPE-----DVFRDRLEE 119 Query: 477 FIQHLPQGYDTLLTDRGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQK 536 P+ L + +LS G+RQ+L +A ++ P V ++DE T+ + + + + Sbjct: 120 VFSMFPR-LKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLS 178 Query: 537 ALRTLMK-GRTSFVIAHRLSTVRE-ADLILVIREGRIVEQGTHEELMRRKGL 586 +R L K G T ++ + E D +++ GRI G EEL+ RK L Sbjct: 179 YVRILNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDGPAEELLARKDL 230 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 80.1 bits (196), Expect = 1e-16 Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 25/212 (11%) Query: 375 LRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITRASLRSH 434 +RD+ L ++I+GP+G+GKTTL+ L+ Y P GRI + D + + + Sbjct: 19 VRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFNDVDVTDL--PPNKRN 76 Query: 435 MGMVLQDTHLFTD-TIRENI-------RYGRPDATDXXXXXXXXXXXXHHFIQHLPQGYD 486 +G+V Q+ L+ T+ ENI +G P + G + Sbjct: 77 IGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVAKLL------------GIE 124 Query: 487 TLLTDRGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTLMK--G 544 LL + LS GQ+Q + +ARA++ +P VL+LDE S++D ++ L+ L K G Sbjct: 125 GLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQKELG 184 Query: 545 RTSFVIAHRLS-TVREADLILVIREGRIVEQG 575 T+ + H S + AD I +I G I + G Sbjct: 185 ITAIYVTHDQSEALAMADRIAIIASGVIQQVG 216 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 78.2 bits (191), Expect = 5e-16 Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 18/214 (8%) Query: 375 LRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITRASLRSH 434 L + L G+L +++GP GAGKTTLV +L P G + G D ++RS Sbjct: 29 LDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREAN-NVRSR 87 Query: 435 MGMVLQDTHLFTDTIRENIRYGRPDATDXXXXXXXXXXX----XHHFIQHLPQ--GYDTL 488 +G+VL E Y R D ++ L + G + Sbjct: 88 IGVVLGG---------ERALYWRLSGWDNLWFFSQLYGIPPREAKRRVKELLEIVGLEEW 138 Query: 489 LTDRGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTLMK-GRTS 547 R + S+G +Q L IAR ++ DP VL+LDE T +D + R ++ +R +++ GRT Sbjct: 139 AHVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTV 198 Query: 548 FVIAHRLSTVRE-ADLILVIREGRIVEQGTHEEL 580 + H + E +D + +I +GRIV +G E+L Sbjct: 199 LLTTHYMVEAEELSDRVAIISKGRIVAEGPPEDL 232 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 78.2 bits (191), Expect = 5e-16 Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 15/204 (7%) Query: 375 LRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITRASLR-- 432 LR+++L G ++AI+GP+G+GKTTL+N++ P GR+++DG + + LR Sbjct: 30 LREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGEELRRF 89 Query: 433 --SHMGMVLQDTHLF-TDTIRENIRYGRPDATDXXXXXXXXXXXXHHFIQHLPQGYDTLL 489 +G V Q +L T T ENI ++ + G Sbjct: 90 RLERVGYVFQQHNLIPTLTALENI------LLPMALAGKANRLRGQELLRRV--GLGGKE 141 Query: 490 TDRGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKAL--RTLMKGRTS 547 LS G++Q L +A A+ DP +++ DE T +D T + + L +G+T Sbjct: 142 RRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEAHSRGKTV 201 Query: 548 FVIAHRLSTVREADLILVIREGRI 571 + H R AD + VI +GR+ Sbjct: 202 VLTTHDPRVARMADRVAVIEDGRL 225 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 77.8 bits (190), Expect = 7e-16 Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 15/214 (7%) Query: 378 ITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITRASLRSHMGM 437 + L G ++GP+G GKTT + L+ P EGRIL+DG+D + ++ M Sbjct: 22 VDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILIDGEDVTF--KDPKDRNVAM 79 Query: 438 VLQDTHLFT-----DTIRENIRYGRPDATDXXXXXXXXXXXXHHFIQHLPQGYDTLLTDR 492 V Q+ L+ D I + R + ++ + LL + Sbjct: 80 VFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIEVAKLLR-----IEDLLDRK 134 Query: 493 GSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTLMKG---RTSFV 549 LS GQ+Q + +ARA++ P V ++DE S++D ++ L+ L K T +V Sbjct: 135 PGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELKKLQKDLKITTVYV 194 Query: 550 IAHRLSTVREADLILVIREGRIVEQGTHEELMRR 583 + + AD I V+ +GR+V+ GT EE+ R Sbjct: 195 THDQAEAMSMADRIAVMNKGRVVQVGTPEEVYMR 228 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 77.4 bits (189), Expect = 9e-16 Identities = 67/227 (29%), Positives = 100/227 (44%), Gaps = 31/227 (13%) Query: 372 RPVLRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITRASL 431 +PVL + L+ G + +VGP GAGKTTL+ + + GR+LL+G D RA Sbjct: 17 QPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLLNGLDPWREPRA-- 74 Query: 432 RSHMGMVLQDTHLFTDTIRENIRYGRPDATDXXXXXXXXXXXXHHFIQHLPQGYDTLLTD 491 R +G+V + R N+ P I P D + Sbjct: 75 REGVGVVFE---------RPNLPSSMPVVEFLESAAA--------IIGSSPSRVDWAIRA 117 Query: 492 RG---------SSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTLM 542 G LS G +Q IA A+L +P L+ DE TS++D R + + L L Sbjct: 118 AGLEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLN 177 Query: 543 K--GRTSFVIAHRL-STVREADLILVIREGRIVEQGTHEELMRRKGL 586 + G + V +H + +R A I V+ GR+ +G+ E+L RR GL Sbjct: 178 REHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDLFRRAGL 224 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 75.5 bits (184), Expect = 4e-15 Identities = 54/215 (25%), Positives = 100/215 (46%), Gaps = 11/215 (5%) Query: 378 ITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITRASLRSHMGM 437 ++L+ G + ++GP+G GKTT + ++ F P EGR+ + +D + + M Sbjct: 22 VSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIGSRDVTMLK--PYERNTAM 79 Query: 438 VLQDTHLFTDT-IRENIRYGRPDATDXXXXXXXXXXXXHHFIQHLPQGYDTLLTDRGSSL 496 V Q+ L+ + +NI YG ++ D LL L Sbjct: 80 VFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWAAELLE-----IDHLLDRYPHQL 134 Query: 497 SEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTLMK--GRTSFVIAH-R 553 S GQ+Q + +ARA++T+P VL++DE S++D +++ + L K G T + H + Sbjct: 135 SGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQKRLGVTIVYVTHDQ 194 Query: 554 LSTVREADLILVIREGRIVEQGTHEELMRRKGLYW 588 + + + V+ GR+ + GT E+ + Y+ Sbjct: 195 EEALSISHRVAVMNRGRVEQVGTPMEVYEKPATYF 229 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 75.5 bits (184), Expect = 4e-15 Identities = 61/225 (27%), Positives = 98/225 (43%), Gaps = 31/225 (13%) Query: 377 DITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITRASL---RS 433 ++T+ P G + +VG +G+GKTT +++R +P GRI DG D + L R Sbjct: 54 NVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGLKEFRR 113 Query: 434 HMGMVLQDTH-----------LFTDTIR-ENIRYGRPDATDXXXXXXXXXXXXHHFIQHL 481 ++ QD + L + I+ I+ G D + + Sbjct: 114 RAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVG--DLQEYIVSLLYQVGLNETHLYRY 171 Query: 482 PQGYDTLLTDRGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTL 541 P + S GQRQ + IAR + P ++LDE TS++D + + L+ L Sbjct: 172 PHEF-----------SGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDL 220 Query: 542 MK--GRTSFVIAHRLSTVR-EADLILVIREGRIVEQGTHEELMRR 583 + T I+H L VR +D I V+ G+IVE G EE+ + Sbjct: 221 QRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEVFEK 265 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 75.1 bits (183), Expect = 5e-15 Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 11/225 (4%) Query: 361 IEHLTFGYDPARPVLRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDG 420 +E LT Y+ PVL + L+ L+ I+GP GAGKTT + ++ P GR+ LDG Sbjct: 5 VEDLTVAYN-GEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLDG 63 Query: 421 KDTRTITRASLRSHMGMVLQD---THLFTDTIRENIRYGRPDATDXXXXXXXXXXXXHHF 477 + T + + G V Q+ L T+RE + T Sbjct: 64 FEA-TGRPEMVGRYAGYVPQNPSAPKLSPMTVREFVE------TSLRLRGVTRARERAVE 116 Query: 478 IQHLPQGYDTLLTDRGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKA 537 + H +L R LS G Q + IARA+ DP +L++DE +SVD + + Sbjct: 117 VLHTLGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARI 176 Query: 538 LRTLMKGRTSFVIAHRLSTVREADLILVIREGRIVEQGTHEELMR 582 + L + R + +H S + I+V+ ++ G EE+ R Sbjct: 177 IAGLARERLVLMTSHDPSLLLGHTDIIVVINRDLIASGPPEEVYR 221 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 74.7 bits (182), Expect = 6e-15 Identities = 70/248 (28%), Positives = 107/248 (43%), Gaps = 28/248 (11%) Query: 372 RPVLRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITRASL 431 R VL+D++L P GS+ +VGP GAGKTTL L+ Y GR+ L G+ SL Sbjct: 21 RWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALLGEPVER-AGGSL 79 Query: 432 RSHMGMVLQDTHLFTD-TIRENIR-----YGRPDATDXXXXXXXXXXXXHHFIQHLPQGY 485 + + +D + + T E +R YG D G Sbjct: 80 FRRVAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLEGYLEEASRL------------SGL 127 Query: 486 DTLLTDRGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTLMK-- 543 L +R S S+G R+ L +A + P++ +LDE T+ +D +++ L+ + Sbjct: 128 GGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERH 187 Query: 544 GRTSFVIAHRLSTVRE-ADLILVIREGRIVEQGTHEELMRRKGLYWQFHQHHQDEAELPT 602 G T + +H + V I +I GRIV G+ E +RR G +EA + Sbjct: 188 GVTVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGEAVRRTG------ASSLEEAYVAL 241 Query: 603 PGAGGGSS 610 GGG S Sbjct: 242 VTGGGGES 249 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 72.0 bits (175), Expect = 4e-14 Identities = 57/213 (26%), Positives = 91/213 (42%), Gaps = 5/213 (2%) Query: 372 RPVLRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITRASL 431 R + ++ G I+GP G+GKTTL+ ++ P G + + G D Sbjct: 17 RTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVCGYDVWGDGWREA 76 Query: 432 RSHMGMVLQDTHLFTDTIRENIRYGRPDATDXXXXXXXXXXXXHHFIQHLPQGYDTLLTD 491 R +G QD + Y ++ L G++ +L Sbjct: 77 RGLIGFAPQDPPMARRMT--GAEYITVVGGLLGLSPGVARREARRVLEML--GFEDVLGR 132 Query: 492 RGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTLMKGRTSFVIA 551 + LS GQR+ L IA A+ ++P V++LDE S +D R L +LR KGRT + Sbjct: 133 VVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASLRKAFKGRTVLFSS 192 Query: 552 HRLSTVR-EADLILVIREGRIVEQGTHEELMRR 583 H E+D +L++ GR+ G EL++R Sbjct: 193 HDPQEAEAESDRVLIMHRGRLAAWGKPRELIQR 225 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 71.6 bits (174), Expect = 5e-14 Identities = 68/241 (28%), Positives = 105/241 (43%), Gaps = 21/241 (8%) Query: 359 LTIEHLTFGYDPARPVLR---DITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQE-- 413 L I+ L Y ++R ++L G I+IVG +G+GK+TL + R P Sbjct: 4 LDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRI 63 Query: 414 --GRILLDGKDTRTITRASLRSH----MGMVLQDTHLFTDTIRENIRYGRPDATDXXXXX 467 GRIL G D ++ LR + +GMV QD + D R G A Sbjct: 64 VGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRT---VGSQIAESLLEHG 120 Query: 468 XXXXXXXHHFIQHLPQGYDTLLTDRGS----SLSEGQRQLLTIARAVLTDPAVLILDEAT 523 + + DR S LS GQRQ + IA AV +P +LI DE T Sbjct: 121 LASSGSEAESMAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPT 180 Query: 524 SSVDTRTERHLQKALRTLM--KGRTSFVIAHRLSTVRE-ADLILVIREGRIVEQGTHEEL 580 +++D + + ++ L +G T ++ H + E +D I V+ G +VE G E++ Sbjct: 181 TALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDV 240 Query: 581 M 581 + Sbjct: 241 V 241 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 71.2 bits (173), Expect = 7e-14 Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 11/213 (5%) Query: 375 LRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITRASLRSH 434 L+ I L+ G + ++GP+G GKTT + ++ P GR+ DG+D + + Sbjct: 19 LKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFDGRDVTGLPPKD--RN 76 Query: 435 MGMVLQDTHLFTDT-IRENIRYGRPDATDXXXXXXXXXXXXHHFIQHLPQGYDTLLTDRG 493 + MV Q L+ + +NI + ++ D LL Sbjct: 77 VAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAAELLE-----IDHLLDRYP 131 Query: 494 SSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTLMK--GRTSFVIA 551 LS GQ+Q + +ARA++T+P VL++DE S++D ++ ++ L + G T + Sbjct: 132 HQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKLQRRLGVTMIYVT 191 Query: 552 H-RLSTVREADLILVIREGRIVEQGTHEELMRR 583 H ++ + D I+V+ G I + GT ++ R Sbjct: 192 HDQVEAMVIGDRIVVMNFGEIQQVGTPSDVYHR 224 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 69.3 bits (168), Expect = 3e-13 Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 18/232 (7%) Query: 359 LTIEHLTFGYDPARPVLRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGR--- 415 L + ++ Y P V+++++L GS+ ++GP GAGKTTL+ + + GR Sbjct: 5 LNVSNVEIMYHPFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTR 64 Query: 416 --ILLDGKD-TRTITRASLRSHMGMVLQDTHLFTD-TIRENIRYGRPDATDXXXXXXXXX 471 I L+G+D T R + V++ +F + T EN+ Sbjct: 65 GSIQLEGEDITNREPDEIARRGVIYVMEGRRIFKELTTEENL-------VSVAYAAGASR 117 Query: 472 XXXHHFIQHLPQGYDTLLTDRGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTE 531 + + P+ L ++ +LS G++Q+L IA A+L P +L+LDE + + + Sbjct: 118 DDIRSVLSYFPR-LKERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKIT 176 Query: 532 RHLQKALRTLMK--GRTSFVIAHRLSTVRE-ADLILVIREGRIVEQGTHEEL 580 + ++ L + G T + E +D VI GRIV +G+ EEL Sbjct: 177 SQIYATIKMLHREEGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEEL 228 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 65.5 bits (158), Expect = 4e-12 Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 17/226 (7%) Query: 359 LTIEHLTFGYDPARPVLRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILL 418 L +E L Y L+ +T P+G + A++G GAGKTTL+ +M P++GRIL+ Sbjct: 5 LAVEDLDVVYPGGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILV 64 Query: 419 DGKDTRTITRA-SLRSHMGMVLQDTHL------FTDTIRENIRYGRPDATDXXXXXXXXX 471 DG + R SLRS + M Q+ + + D + GR Sbjct: 65 DGYELRPKGPGDSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAEA 124 Query: 472 XXXHHFIQHLPQGYDTLLTDRGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSV-DTRT 530 L D L + G S +RQ L + +A+ ++LDE T+ + Sbjct: 125 SEA----LGLNIDPDRYLGEMGFS----ERQRLEVIKALALGSRAVLLDEPTTHLTPEEA 176 Query: 531 ERHLQKALRTLMKGRTSFVIAHRLSTVRE-ADLILVIREGRIVEQG 575 R L+ A R G ++ HR+ E AD ++++R+G V +G Sbjct: 177 ARMLEAAGRLAASGAAVLLVTHRIGEAMEHADRLVILRKGVKVYEG 222 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 64.3 bits (155), Expect = 8e-12 Identities = 58/209 (27%), Positives = 89/209 (42%), Gaps = 23/209 (11%) Query: 385 GSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITR--ASLRSHMGMVLQDT 442 G L +++GP GAGKTT + +L P G + G +I R ++R +G+V QD Sbjct: 32 GELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWIAGY---SIVREPGNVRRVIGLVPQDL 88 Query: 443 HLFT-----DTIRENIR-YGRPDATDXXXXXXXXXXXXHHFIQHLPQGYDTLLTDRGSSL 496 D + R YG P + H R ++ Sbjct: 89 TADDEMSGWDNVYIQARLYGLPSSEARERTREVLDYLDLMEAAHR----------RVATY 138 Query: 497 SEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTLMKGRTSFVIAHRLST 556 S G R+ L IA +++ P VL LDE T +D + R L + + L + + ++ Sbjct: 139 SGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLKRSAVTILLTTHYME 198 Query: 557 VRE--ADLILVIREGRIVEQGTHEELMRR 583 E +D + +I GRIV +GT EEL R Sbjct: 199 EAEMLSDRVAIIDRGRIVAEGTPEELKAR 227 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 64.3 bits (155), Expect = 8e-12 Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 20/213 (9%) Query: 372 RPVLRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITRASL 431 RPVLR ++L G + + G GAGKTT + +L+ G + G D + Sbjct: 27 RPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPWGGGFERV 86 Query: 432 RSHMGMVLQDTHLFTD-TIRENIRY------GRPDATDXXXXXXXXXXXXHHFIQHLPQG 484 + +G + +D ++ T ENI + G D + + G Sbjct: 87 KGEVGYLPEDASVYERLTGMENILFYARLYSGWRDVEELVENAVFYSGLSREDLARRAGG 146 Query: 485 YDTLLTDRGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTLMK- 543 Y S+G ++ L + +++ P +++LDE TS VD ++K LR L + Sbjct: 147 Y-----------SKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSRE 195 Query: 544 GRTSFVIAHRLSTVRE-ADLILVIREGRIVEQG 575 GR V H L+ E AD + +I G V G Sbjct: 196 GRAILVTTHDLALAEEIADRVTIIHGGSTVASG 228 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 63.5 bits (153), Expect = 1e-11 Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 11/215 (5%) Query: 375 LRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITRASLRSH 434 L+ ++ G + ++GP GAGKTTL N++ Y P GR++ G D T A RS Sbjct: 20 LKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYKGVDI-TGWPAYRRSR 78 Query: 435 MGMVLQ---DTHLFTDTIRENIRYGRPDATDXXXXXXXXXXXXHHFIQHLPQGYDTLLTD 491 G+ L T+ N+ G T+ + L D L D Sbjct: 79 AGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAMEAIDMV-GLAGKEDILAKD 137 Query: 492 RGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTLMK-GRTSFVI 550 L+ +++ L +ARA+ T P +L+LDE + + R L L + K G T ++ Sbjct: 138 ----LNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLEISKRGITIIMV 193 Query: 551 AHRLSTVRE-ADLILVIREGRIVEQGTHEELMRRK 584 H + V A+ ++V+ G + +GT E+ K Sbjct: 194 EHVMRAVMNFAERVIVLHFGEKIAEGTPREVASNK 228 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 62.0 bits (149), Expect = 4e-11 Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 11/213 (5%) Query: 375 LRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITRASLRSH 434 LR ++ SG + +GP GAGKTT + +LM F P G + G + + +R Sbjct: 20 LRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARVFGVELYNPGASGVRRR 79 Query: 435 MGMVLQDTHLFTDTIRENIRYGRPDATDXXXXXXXXXXXXHHFIQHLPQGYDTLLTDRGS 494 +G V + + G ++ L + + L Sbjct: 80 VGYVPGEFEFYG---------GVSGGRMLDYWCRLVGGCSRGVVRELLEAFPLPLERAVG 130 Query: 495 SLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRT-LMKGRTSFVIAHR 553 + S G +Q+L + A +P ++++DE T+ +D + +R+ +G T F +H Sbjct: 131 TYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDFVRSKAREGVTVFFSSHV 190 Query: 554 LSTV-READLILVIREGRIVEQGTHEELMRRKG 585 LS V R AD + ++R G +V L+R+ G Sbjct: 191 LSEVQRVADRVGLLRSGVLVALEDVSSLLRKSG 223 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 61.6 bits (148), Expect = 5e-11 Identities = 59/215 (27%), Positives = 100/215 (46%), Gaps = 24/215 (11%) Query: 378 ITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKD-TRTITRASLRSHMG 436 ++L G ++A++G GAGKTT + + P+ G I+ G+D T + + Sbjct: 25 VSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIWQGRDITGLPAFKRVEEGIS 84 Query: 437 MVLQDTHLFTD-TIRENIRYGRPDATDXXXXXXXXXXXXHHFIQHLPQGYD--TLLTDRG 493 V + +F T+ EN+R HF L Q Y +L R Sbjct: 85 HVPEGRGIFPRLTVYENLR-----------VAASTRRAKEHFQDSLEQVYTIFPILKARR 133 Query: 494 S----SLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTER---HLQKALRTLMKGRT 546 S +LS G++Q+L IARA++ P +L++DE + + + R +L LR + G T Sbjct: 134 SQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLASRLREEL-GVT 192 Query: 547 SFVIAHRLS-TVREADLILVIREGRIVEQGTHEEL 580 ++ + +++ AD V+ GRIV +G +EL Sbjct: 193 ILLVEQNVGLSLKVADRGYVMETGRIVLEGASDEL 227 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 61.2 bits (147), Expect = 7e-11 Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 10/207 (4%) Query: 378 ITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGK---DTRTITRASLRSH 434 + L G ++AIVG +G GKTTL ++ +P +G I G+ R LR Sbjct: 41 VDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARDRRLRRK 100 Query: 435 MGMVLQDTHLFTDTIRE-NIRYGRPDATDXXXXXXXXXXXXHHFIQH--LPQGYDTLLTD 491 + MV QD + D + + P ++ L G + Sbjct: 101 LQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETVGLTPGRE-FYWR 159 Query: 492 RGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTLMK--GRTSFV 549 + LS GQRQ + IAR ++ +P V++ DE S +D + + + G T + Sbjct: 160 KPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTGATIVL 219 Query: 550 IAHRLSTVRE-ADLILVIREGRIVEQG 575 I H ++ R AD I V+ G+IVE G Sbjct: 220 ITHDIAVARAVADRIAVMYLGKIVEVG 246 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 60.5 bits (145), Expect = 1e-10 Identities = 70/225 (31%), Positives = 97/225 (43%), Gaps = 35/225 (15%) Query: 377 DITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITRA---SLRS 433 D TL A G + A++G GAGKTTL+ +L P G I + G+ + R ++R+ Sbjct: 33 DFTLRA--GEVHALLGENGAGKTTLMRILYGEIKPTMGEIYVWGR--KVSWRGPWDAIRN 88 Query: 434 HMGMVLQDTHLFTD-TIRENIR-------YGRPDATDXXXXXXXXXXXXHHFIQHLPQGY 485 + MV Q L T+ ENI GR +A G Sbjct: 89 GIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRTLETAERL------------GL 136 Query: 486 DTLLTDRGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTLMKGR 545 + L + L G RQ + I +A+ VLILDE TS++ L LR L Sbjct: 137 EIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLRLLKDMG 196 Query: 546 TSFV-IAHRL-STVREADLILVIREGRI------VEQGTHEELMR 582 S V I H+L VR AD + V+R GR+ V + + EEL R Sbjct: 197 VSVVYITHKLGEVVRVADRVTVLRRGRVSAVIEDVGRTSEEELAR 241 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 58.5 bits (140), Expect = 4e-10 Identities = 53/231 (22%), Positives = 102/231 (44%), Gaps = 37/231 (16%) Query: 375 LRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITRASLRSH 434 L +++++ G ++ I+GP GAGKT+L+N++ Y PQ GR+ G+D T + R Sbjct: 17 LDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDI-TGLKPHQRIT 75 Query: 435 MGM--VLQDTHLF-TDTIRENI--------------------RYGRPDATDXXXXXXXXX 471 +G+ Q + LF + T+ ENI R R + Sbjct: 76 LGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWEVEARERAEHVID 135 Query: 472 XXXHHFIQHLPQGYDTLLTDRGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTE 531 H +H P G +L G ++ + +A A+ +P V+++DE + + + Sbjct: 136 LLDLHEHRHSPIG----------ALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEK 185 Query: 532 RHLQKAL--RTLMKGRTSFVIAHRLSTVRE-ADLILVIREGRIVEQGTHEE 579 + +A+ + T +I H + V + D ++V+ G+++ +G E Sbjct: 186 EDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHE 236 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 57.0 bits (136), Expect = 1e-09 Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%) Query: 496 LSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTLMK--GRTSFVIAHR 553 LS GQRQ + IARA+ +P +L+LDE TS++D + + + LR L K G T +I H Sbjct: 190 LSGGQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHD 249 Query: 554 LSTVR-EADLILVIREGRIVE 573 +S VR + ++V+ G+I+E Sbjct: 250 ISVVRYMSSSVVVMYSGKIME 270 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 53.1 bits (126), Expect = 2e-08 Identities = 57/219 (26%), Positives = 102/219 (46%), Gaps = 24/219 (10%) Query: 372 RPVLRDITLDAPSGSLIAIVGPTGAGKTTLVNLLMRFYDPQEGRILLDGKDTRTITRASL 431 R R++ SG ++ ++GP GAGKTTL+ ++ P G IL++G + R+ L Sbjct: 17 RYAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVEGVNPRSPGFEKL 75 Query: 432 RSHMGMV--LQDTHLFT------DTIRENIRYGRPDATDXXXXXXXXXXXXHHFIQHLPQ 483 +G V L L+T +T+ Y +A + L Sbjct: 76 LPRIGYVPELPVVPLWTTPCILLETLARLEGYTSVEARVRAREALE--------VVGLAG 127 Query: 484 GYDTLLTDRGSSLSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTLMK 543 +T + LS+G R+ + +A+A + + +L+LDE S +D +++ LRT+ + Sbjct: 128 ECETPI----GKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAR 183 Query: 544 -GRTSFVIAHRLSTVRE-ADLILVIREGRIVEQGTHEEL 580 G T V +H L + + A +LV++ ++ G+ EEL Sbjct: 184 EGATVIVSSHILRELEDIATHVLVLKTDQLF-YGSIEEL 221 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 45.8 bits (107), Expect = 3e-06 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 496 LSEGQRQLLTIARAVLTDPAVLILDEATSSVDTRTERHLQKALRTLMK--GRTSFVIAHR 553 LS GQRQ + IARA + +P++++ DE S +D + + L + G + I H Sbjct: 196 LSGGQRQRVAIARAFILNPSLVVADEPVSMLDVSIRAEILELLLGFREKLGTSLLFITHD 255 Query: 554 LSTVRE-ADLILVIREGRIVEQGTHEELMRR 583 L+ R D I V+ G+IVE G ++ R Sbjct: 256 LAVARYICDRIAVMYLGKIVETGDARRIIER 286 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 511,970 Number of Sequences: 1700 Number of extensions: 19485 Number of successful extensions: 195 Number of sequences better than 1.0e-04: 32 Number of HSP's better than 0.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 126 Number of HSP's gapped (non-prelim): 55 length of query: 611 length of database: 492,079 effective HSP length: 82 effective length of query: 529 effective length of database: 352,679 effective search space: 186567191 effective search space used: 186567191 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718306|ref|YP_003873838.1| transporter [Spirochaeta thermophila DSM 6192] (572 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 77 1e-15 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 73 2e-14 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 70 2e-13 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 69 2e-13 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 69 3e-13 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 68 5e-13 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 66 3e-12 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 65 3e-12 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 65 4e-12 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 65 4e-12 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 63 2e-11 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 62 5e-11 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 61 6e-11 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 61 8e-11 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 61 8e-11 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 61 8e-11 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 60 1e-10 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 60 2e-10 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 59 2e-10 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 59 4e-10 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 57 2e-09 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 55 6e-09 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 54 8e-09 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 54 8e-09 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 53 2e-08 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 52 3e-08 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 52 4e-08 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 51 7e-08 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 49 3e-07 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 48 7e-07 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 47 1e-06 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 47 2e-06 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 45 4e-06 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 42 5e-05 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 76.6 bits (187), Expect = 1e-15 Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 10/143 (6%) Query: 347 ALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLDGEDIQAL---SLEE 403 A+ +++ P G +G++G +G+GKTT +LR+ EP+GGR+ DG D+ L L+E Sbjct: 51 AVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGLKE 110 Query: 404 LRARIAVVFQKPVLFRGTVADNLRWGFPGATEEQMIEALKKAQAWEFVSRL---PGVLEA 460 R R ++FQ P G++ + + F E + +K E++ L G+ E Sbjct: 111 FRRRAQIIFQDPY---GSL-NPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQVGLNET 166 Query: 461 RIEQGGTNLSGGQRQRLAIARAL 483 + + SGGQRQR+AIAR L Sbjct: 167 HLYRYPHEFSGGQRQRIAIARVL 189 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 73.2 bits (178), Expect = 2e-14 Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 10/154 (6%) Query: 335 VEDLSVAYDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLDGE 394 +ED+S Y L D+S E P G ++GP GAGK+TL+ + T GRVL + Sbjct: 8 LEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLFENT 67 Query: 395 DIQALSLEELRARIAV--VFQKPVLFRG-TVADNLRWGFPGATEEQMIEALKKAQAWEFV 451 D+ + + RA+I + +FQ +FR TV +NLR E+ + L+ E Sbjct: 68 DVTHMPPHD-RAKIGMTFIFQLENIFRELTVYENLRLAGYDLPEDVFRDRLE-----EVF 121 Query: 452 SRLPGVLEARIEQGGTNLSGGQRQRLAIARALVR 485 S P + E ++ GT LSGG+RQ LA+A ++R Sbjct: 122 SMFPRLKERLGQKAGT-LSGGERQMLAMAIGIMR 154 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 69.7 bits (169), Expect = 2e-13 Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 20/157 (12%) Query: 335 VEDLSVAYDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLDGE 394 VEDL+VAY+G P LS ++ E + +IGP GAGKTT + A+L + +P+ GRV LDG Sbjct: 5 VEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLDG- 63 Query: 395 DIQALSLEELRARIAVVFQK--------PVLFRGTVADNLRWGFPGATEEQMIEALKKAQ 446 +A E+ R A + P+ R V +LR E+ +E L Sbjct: 64 -FEATGRPEMVGRYAGYVPQNPSAPKLSPMTVREFVETSLRLRGVTRARERAVEVL---- 118 Query: 447 AWEFVSRLPGVLEARIEQGGTNLSGGQRQRLAIARAL 483 + VLE+R+ + LS G QR+ IARA+ Sbjct: 119 --HTLGIRGEVLESRLWE----LSMGMLQRVFIARAI 149 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 69.3 bits (168), Expect = 2e-13 Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 15/155 (9%) Query: 335 VEDLSVAYDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLDGE 394 ++++ +Y AL +SF P + V+GP+G GKTT++ + + +P GRV G Sbjct: 8 LDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFGGV 67 Query: 395 DIQALSLEELRARIAVVFQKPVLF-RGTVADNLRW-----GFPGATEEQMIEALKKAQAW 448 D L E R + VFQ LF TV DN+ + GF G + +E A Sbjct: 68 DYTGLPPE--RRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVE-----WAL 120 Query: 449 EFVSRLPGVLEARIEQGGTNLSGGQRQRLAIARAL 483 E V P + + T LSGGQ+QR+A+ARA+ Sbjct: 121 ETVGLTPP--REFMGRRVTGLSGGQQQRVALARAI 153 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 68.9 bits (167), Expect = 3e-13 Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 8/155 (5%) Query: 333 LVVEDLSVAYDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLD 392 L V L V+Y G L + G ++ ++GP+G+GK+TL+ A+ R+ EP G ++ Sbjct: 5 LEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVFR 64 Query: 393 GEDIQALS---LEELRARIAVVFQKPVLF-RGTVADNLRWGFPGATEEQMIEALKKAQAW 448 G D+ LS L +R +I + Q LF TV N+ + A +A + +A Sbjct: 65 GVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDA--EERAV 122 Query: 449 EFVSRLPGVLEARIEQGGTNLSGGQRQRLAIARAL 483 +++S L +E + LSGGQ+QR A+ARAL Sbjct: 123 KYLSMLG--IEDLAHRHPARLSGGQQQRAALARAL 155 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 68.2 bits (165), Expect = 5e-13 Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 15/166 (9%) Query: 333 LVVEDLSVAYDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLD 392 L VEDL + G AL ++ E G +IGP G+GKTTLV + +P GGRVL Sbjct: 7 LRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLFK 66 Query: 393 GEDIQALSLEEL-RARIAVVFQKPVLFRG-TVADNLRWGFPGATEEQMIEALKK------ 444 G DI +S E+ + + FQ P F TV +N+ E + L + Sbjct: 67 GRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWLGF 126 Query: 445 -----AQAWEFVSRLPGVLEARIEQGGTNLSGGQRQRLAIARALVR 485 A+A+E + + L+ ++ LSGGQ + L IARA+++ Sbjct: 127 EKRAAARAFEILGWVG--LDHMWDRRSGELSGGQMKLLEIARAIMK 170 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 65.9 bits (159), Expect = 3e-12 Identities = 53/154 (34%), Positives = 71/154 (46%), Gaps = 32/154 (20%) Query: 342 YDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLDGEDIQALSL 401 Y G P L + E G +G++GP GAGKTTL+ L + GGRVLL+G D Sbjct: 14 YRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLLNGLD----PW 69 Query: 402 EELRAR--IAVVFQKPVLFRGTVADNLRWGFPGATEEQMIEALKKAQAWEFVSRLPGVLE 459 E RAR + VVF++P NL P ++E L+ A A + P ++ Sbjct: 70 REPRAREGVGVVFERP---------NLPSSMP------VVEFLESAAA--IIGSSPSRVD 112 Query: 460 ARIEQGG---------TNLSGGQRQRLAIARALV 484 I G LS G +QR AIA AL+ Sbjct: 113 WAIRAAGLEGHEWKTFPQLSAGLKQRAAIAHALL 146 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 65.5 bits (158), Expect = 3e-12 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 24/166 (14%) Query: 331 ASLVVEDLSVAYDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVL 390 A + +E + + A+ + G ++GP+G GKTT + + + P GR+L Sbjct: 2 AEIRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRIL 61 Query: 391 LDGEDIQALSLEELRARIAVVFQKPVLF-RGTVADN------LRWGFPGATEE----QMI 439 +DGED+ ++ +A+VFQ L+ +V DN LR G T++ ++I Sbjct: 62 IDGEDVTFKDPKD--RNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVI 119 Query: 440 EALKKAQAWEFVSRLPGVLEARIEQGGTNLSGGQRQRLAIARALVR 485 E K + + + R PG LSGGQ+QR+A+ARALVR Sbjct: 120 EVAKLLRIEDLLDRKPG-----------QLSGGQQQRVALARALVR 154 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 65.1 bits (157), Expect = 4e-12 Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 8/156 (5%) Query: 331 ASLVVEDLSVAYDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVL 390 AS+ +E + + A+ D++ + ++GP+G+GKTTL+ + + +PS GR+ Sbjct: 2 ASVKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIY 61 Query: 391 LDGEDIQALSLEELRARIAVVFQKPVLF-RGTVADNLRWGFPGATEEQMIEALKKAQAWE 449 + D+ L + I +VFQ L+ TV +N+ FP A+K+ Sbjct: 62 FN--DVDVTDLPPNKRNIGLVFQNYALYPHMTVYENI--AFPLRLRNFGEPAIKEKVL-- 115 Query: 450 FVSRLPGVLEARIEQGGTNLSGGQRQRLAIARALVR 485 V++L G+ E +++ LSGGQ+QR+A+ARALV+ Sbjct: 116 SVAKLLGI-EGLLDRYPAQLSGGQQQRVALARALVK 150 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 65.1 bits (157), Expect = 4e-12 Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 18/160 (11%) Query: 331 ASLVVEDLSVAYDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVL 390 A + +E + + T AL I E G + ++GP+G GKTT + + + P GRV Sbjct: 2 AGVRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVY 61 Query: 391 LDGEDIQALSLEELRARIAVVFQKPVLF-RGTVADNLRWGFPGATEEQMIEALKKAQAWE 449 DG D+ L ++ +A+VFQ L+ V DN+ FP +KK E Sbjct: 62 FDGRDVTGLPPKD--RNVAMVFQSYALWPHMRVFDNI--AFP--------LKIKKLPRDE 109 Query: 450 FVSRLPGVLEA-----RIEQGGTNLSGGQRQRLAIARALV 484 V R+ E +++ LSGGQ+QR+A+ARA+V Sbjct: 110 IVRRVRWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIV 149 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 62.8 bits (151), Expect = 2e-11 Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 7/155 (4%) Query: 333 LVVEDLSVAYDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLD 392 L V+ + V Y AL +S G + ++G GAGKTT ++ + + +P G ++ Sbjct: 7 LEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIWQ 66 Query: 393 GEDIQAL-SLEELRARIAVVFQKPVLF-RGTVADNLRWGFPGATEEQMIEALKKAQAWEF 450 G DI L + + + I+ V + +F R TV +NLR ++ + + E Sbjct: 67 GRDITGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRVAASTRRAKEHFQ-----DSLEQ 121 Query: 451 VSRLPGVLEARIEQGGTNLSGGQRQRLAIARALVR 485 V + +L+AR Q LSGG++Q LAIARAL++ Sbjct: 122 VYTIFPILKARRSQLAGTLSGGEQQMLAIARALIQ 156 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 61.6 bits (148), Expect = 5e-11 Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 36/170 (21%) Query: 336 EDLSVAYDGTP-----------ALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEP 384 EDL+V +G AL ++S G + ++GP+G+GKTTL+ + + P Sbjct: 7 EDLAVVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRP 66 Query: 385 SGGRVLLDGEDIQALSLEELR----ARIAVVFQKPVLFRGTVADNLRWGFPGATEEQMIE 440 + GRV++DG ++ + EELR R+ VFQ+ L P T + I Sbjct: 67 NAGRVIVDGFEVSSAGGEELRRFRLERVGYVFQQHNL------------IPTLTALENI- 113 Query: 441 ALKKAQAWEFVSRLPG-VLEARIEQGG------TNLSGGQRQRLAIARAL 483 L A A + +RL G L R+ GG LSGG++QRLA+A AL Sbjct: 114 LLPMALAGK-ANRLRGQELLRRVGLGGKERRYPEELSGGEQQRLAVAVAL 162 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 61.2 bits (147), Expect = 6e-11 Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 21/163 (12%) Query: 335 VEDLSVAYDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTE--PSG---GRV 389 V L+V L ISF+A GT ++GP+G+GK+TL+ + R+ + P G V Sbjct: 8 VSGLNVWITDKHILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEV 67 Query: 390 LLDGEDIQALSLEELRARIAVVFQKPVLF-RGTVADNLRWG--FPGATE-----EQMIE- 440 ++ ++ +R +VFQ+P F T+ +N+ G G + ++++E Sbjct: 68 WINNMNVMKEDPYNIRRYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEIVEW 127 Query: 441 ALKKAQAWEFVSRLPGVLEARIEQGGTNLSGGQRQRLAIARAL 483 ALK A W+ V + R+ LSGGQRQRL++ARAL Sbjct: 128 ALKMAHLWDEV-------KDRLSDYPHQLSGGQRQRLSLARAL 163 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 60.8 bits (146), Expect = 8e-11 Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 19/169 (11%) Query: 331 ASLVVEDLSVAYDGTP----ALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPS- 385 A L ++DL V Y A+ +S G I ++G +G+GK+TL +++ R+ P Sbjct: 2 AVLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPG 61 Query: 386 ---GGRVLLDGEDIQALSLEELR----ARIAVVFQKPVLFRG---TVADNLRWGFPGATE 435 GGR+L G D+ +L+ EELR I +VFQ P + TV + E Sbjct: 62 RIVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIA---ESLLE 118 Query: 436 EQMIEALKKAQAWE-FVSRLPGVLEARIEQGGTNLSGGQRQRLAIARAL 483 + + +A++ L G+ R LSGGQRQR+AIA A+ Sbjct: 119 HGLASSGSEAESMAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAV 167 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 60.8 bits (146), Expect = 8e-11 Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 18/160 (11%) Query: 331 ASLVVEDLSVAYDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVL 390 A + +E ++ + T AL +S G ++GP+G GKTT + + P GRV Sbjct: 2 AGIRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVY 61 Query: 391 LDGEDIQALSLEELRARIAVVFQKPVLF-RGTVADNLRWGFPGATEEQMIEALKKAQAWE 449 + D+ L E A+VFQ L+ V DN+ +G L+K E Sbjct: 62 IGSRDVTMLKPYE--RNTAMVFQNYALWPHMRVFDNIAYGL----------KLRKLPRSE 109 Query: 450 FVSRLPGVLEA-----RIEQGGTNLSGGQRQRLAIARALV 484 V R+ E +++ LSGGQ+QR+A+ARA+V Sbjct: 110 IVRRVRWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIV 149 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 60.8 bits (146), Expect = 8e-11 Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 2/93 (2%) Query: 333 LVVEDLSVAYDG-TPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLL 391 L VEDL V Y G AL ++ PAG ++G GAGKTTL+ A++ + +P GR+L+ Sbjct: 5 LAVEDLDVVYPGGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILV 64 Query: 392 DGEDIQALSL-EELRARIAVVFQKPVLFRGTVA 423 DG +++ + LR+ I + Q P ++ G A Sbjct: 65 DGYELRPKGPGDSLRSGIYMASQNPPVYPGIKA 97 Score = 43.1 bits (100), Expect = 2e-05 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 5/143 (3%) Query: 346 PALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLDGEDI-QALSLEEL 404 P L E G +GV G G G+ L ++ + +P+ GR+L+ G D+ +A L Sbjct: 268 PRLRMARLEVRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARR 327 Query: 405 RARIAVVFQKPV---LFRG-TVADNLRWGFPGATEEQMIEALKKAQAWEFVSRLPGVLEA 460 R + V+ ++ + L G ++A N+ A + +++ + E + R G+ Sbjct: 328 RLGLGVIPEERLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGIKAV 387 Query: 461 RIEQGGTNLSGGQRQRLAIARAL 483 Q LSGG QRL +AR L Sbjct: 388 SPRQMVDELSGGNMQRLVLAREL 410 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 60.1 bits (144), Expect = 1e-10 Identities = 61/238 (25%), Positives = 98/238 (41%), Gaps = 29/238 (12%) Query: 333 LVVEDLSVAYDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLD 392 L E++++ + G AL ++S E G +G+IGP GAGKT+L+ + + +P GRV Sbjct: 2 LWTENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFK 61 Query: 393 GEDIQALS-LEELRARIAVVFQKPVLF-----------------RGTVADNLRWGFPGAT 434 G DI L + + ++ FQ LF RG++ + W F Sbjct: 62 GRDITGLKPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKR 121 Query: 435 EEQMIEALKKAQAWEFVSRLPGVLEARIEQGGTNLSGGQRQRLAIARALVR-PXXXXXXX 493 E +EA ++A E V L + E R G L G ++++ +A AL + P Sbjct: 122 WE--VEARERA---EHVIDLLDLHEHRHSPIGA-LPPGIQKKVDLAGALAQNPEVVLMDE 175 Query: 494 XXXXXXXXXXE---XXXXXXXXXXXXXXXXISQRMSAIT-TCDLILVLDDGRLAGAGP 547 E I M +T CD ++V+D G++ GP Sbjct: 176 PMAGLSKEEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGP 233 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 59.7 bits (143), Expect = 2e-10 Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 25/170 (14%) Query: 333 LVVEDLSVAYDG----TPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPS--- 385 LVVEDL + A+ +SF G +G+ G +G+GK+TL ++L + P Sbjct: 6 LVVEDLKTYFYTLRGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRI 65 Query: 386 -GGRVLLDGEDIQALSLEELR-----ARIAVVFQ------KPVLFRGTVADNLRWGFPGA 433 GGR+++DG D+ ++S ELR ++++VFQ PV G + + G Sbjct: 66 VGGRIMIDGMDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGV 125 Query: 434 TEEQMIEALKKAQAWEFVSRLPGVLEARIEQGGTNLSGGQRQRLAIARAL 483 + + + +E + + G+ + ++ LSGGQ+QR+ IA AL Sbjct: 126 GRHE-----ARQRVYELLESV-GLHRSIADRYPHELSGGQKQRVVIAMAL 169 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 59.3 bits (142), Expect = 2e-10 Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 5/147 (3%) Query: 338 LSVAYDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLDGEDIQ 397 LS + A ++ F +G +GV+GP GAGKTTL+ +L + +PS G +L++G + + Sbjct: 10 LSKRFGQRYAYRNVEFTFTSGI-LGVLGPNGAGKTTLLKTILGLVKPSAGEILVEGVNPR 68 Query: 398 ALSLEELRARIAVVFQKPVLFRGTVADNLRWGFPGATEEQMIEALKKAQAWEFVSRLPGV 457 + E+L RI V + PV+ T L +EA +A+ V L G Sbjct: 69 SPGFEKLLPRIGYVPELPVVPLWTTPCILLETLARLEGYTSVEARVRAREALEVVGLAGE 128 Query: 458 LEARIEQGGTNLSGGQRQRLAIARALV 484 E I + LS G R+R+ +A+A + Sbjct: 129 CETPIGK----LSKGARKRVLVAQAFI 151 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 58.5 bits (140), Expect = 4e-10 Identities = 59/226 (26%), Positives = 82/226 (36%), Gaps = 22/226 (9%) Query: 342 YDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLDGEDIQALSL 401 + G A++ +SF G R ++GP G+GKTTL+ + + PSGG V + G D+ Sbjct: 14 FGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVCGYDVWGDGW 73 Query: 402 EELRARIAVVFQKPVLFRG-------TVADNLRWGFPGATEEQMIEALKKAQAWEFVSRL 454 E R I Q P + R TV L PG + L+ + + R+ Sbjct: 74 REARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREARRVLEMLGFEDVLGRV 133 Query: 455 PGVLEARIEQGGTNLSGGQRQRLAIARALV-RPXXXXXXXXXXXXXXXXXEXXXXXXXXX 513 LSGGQR+ L IA AL P E Sbjct: 134 V-----------ARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASLRKA 182 Query: 514 XXXXXXXISQR--MSAITTCDLILVLDDGRLAGAG-PHPLLLEQCP 556 S A D +L++ GRLA G P L+ P Sbjct: 183 FKGRTVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPRELIQRYAP 228 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 56.6 bits (135), Expect = 2e-09 Identities = 51/154 (33%), Positives = 75/154 (48%), Gaps = 9/154 (5%) Query: 333 LVVEDLSVAYDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLD 392 L V D+ + G AL +SF G R+G+IGP GAGKTTL + + P GRV+ Sbjct: 5 LDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYK 64 Query: 393 GEDIQAL-SLEELRARIAVVFQ--KPVLFRGTVADNLRWGFPGATEEQMIEALKKAQAWE 449 G DI + RA IA FQ +P L TV +N+ G T + + +A + Sbjct: 65 GVDITGWPAYRRSRAGIARTFQIVRP-LANLTVLNNVIVGALLRTNDIREARERAMEAID 123 Query: 450 FVSRLPGVLEARIEQGGTNLSGGQRQRLAIARAL 483 V L + + +L+ +++RL +ARAL Sbjct: 124 MVG-----LAGKEDILAKDLNLIEKKRLELARAL 152 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 54.7 bits (130), Expect = 6e-09 Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 47/174 (27%) Query: 347 ALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVL----------LDGEDI 396 A+ +SF G ++G +G GKTT A+LR+ + +GGRV L+ + Sbjct: 49 AVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERRGV 108 Query: 397 QAL-------------SLEELRARIAVVFQKP-------VLFRGTVADNLRWGFPGATEE 436 ++L + LR + +V+Q P + + D L G E Sbjct: 109 KSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNARE 168 Query: 437 ------QMIEALKKAQAWEFVSRLPGVLEARIEQGGTNLSGGQRQRLAIARALV 484 +M+EA+K A +F+ R P LSGGQRQR+AIARA + Sbjct: 169 REEMVARMLEAVKLTPASDFMDRYP-----------HQLSGGQRQRVAIARAFI 211 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 54.3 bits (129), Expect = 8e-09 Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 8/140 (5%) Query: 347 ALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLDGEDIQALSLEELRA 406 AL + + GT ++GP GAGKTTLV L + P G + G D+ +R+ Sbjct: 28 ALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDV-VREANNVRS 86 Query: 407 RIAVVF--QKPVLFRGTVADNLRWGFPGATEEQMIEALKKAQAWEFVSRLPGVLEARIEQ 464 RI VV ++ + +R + DNL W F EA ++ + + L R+E Sbjct: 87 RIGVVLGGERALYWRLSGWDNL-WFFSQLYGIPPREAKRRVKELLEIVGLEEWAHVRVE- 144 Query: 465 GGTNLSGGQRQRLAIARALV 484 N S G +QRL IAR L+ Sbjct: 145 ---NYSKGMKQRLHIARGLI 161 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 54.3 bits (129), Expect = 8e-09 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 23/165 (13%) Query: 330 PASLVVEDLSVAYDGTP-ALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGR 388 P S+ +E + Y+ +P L +SF G+ + ++GP G+GKTTL+ L + +PS GR Sbjct: 3 PCSVRLEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGR 62 Query: 389 VLLDGEDI--------QALSLEELRARIAVVFQKPVLFRGTVADNLRWGFPGATEEQMIE 440 V + G A + E+ R+ V + +L+R V++ + WG E+++ Sbjct: 63 VEVCGSPPGRVRRMLGYAPASPEVDPRLKAV-EVALLYRYGVSEGVAWG--RRDWEEVLA 119 Query: 441 ALKKAQAWEFVSRLPGVLEARIEQGGTNLSGGQRQRLAIARALVR 485 AL + E R G LS GQR+ + +A L R Sbjct: 120 ALGEMGVGELAWRRWG-----------ELSSGQRRLVILAGVLAR 153 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 52.8 bits (125), Expect = 2e-08 Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 21/147 (14%) Query: 348 LSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVL-----LDGEDIQALSLE 402 + ++S G+ +IGP GAGKTTL+ A+ + + GRV L+GEDI + Sbjct: 21 IKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNREPD 80 Query: 403 ELRARIAVVFQKPVLFRGTVADNLRWGFPGATEEQMIEALKKAQA-----WEFVSRLPGV 457 E+ AR V++ V + R TEE ++ A A +S P + Sbjct: 81 EI-ARRGVIY---------VMEGRRIFKELTTEENLVSVAYAAGASRDDIRSVLSYFPRL 130 Query: 458 LEARIEQGGTNLSGGQRQRLAIARALV 484 E E+ G NLSGG++Q LAIA AL+ Sbjct: 131 KERLGEKAG-NLSGGEQQMLAIAMALL 156 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 52.4 bits (124), Expect = 3e-08 Identities = 44/140 (31%), Positives = 62/140 (44%), Gaps = 7/140 (5%) Query: 344 GTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLDGEDIQALSLEE 403 G L D+S P G+ GV+GP GAGKTTL LL + GRV L GE ++ Sbjct: 20 GRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALLGEPVERAG-GS 78 Query: 404 LRARIAVVFQKPVLFRGTVADNLRWGFPGATEEQMIEALKKAQAWEFVSRLPGVLEARIE 463 L R+A + + +R + + +E E SRL G L R+ Sbjct: 79 LFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLEGY-----LEEASRLSG-LGGRLG 132 Query: 464 QGGTNLSGGQRQRLAIARAL 483 + + S G R+RL +A L Sbjct: 133 ERVRSYSKGMRRRLLVAAML 152 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 52.0 bits (123), Expect = 4e-08 Identities = 48/154 (31%), Positives = 68/154 (44%), Gaps = 27/154 (17%) Query: 347 ALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLDGEDIQALSL---EE 403 A+ + G + ++G +G GKTTL A++ + EPS G + GE + L Sbjct: 37 AVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARDRR 96 Query: 404 LRARIAVVFQKP-------VLFRGTVADNLRWGFPGATEE------QMIEALKKAQAWEF 450 LR ++ +VFQ P + VA+ L EE +M+E + EF Sbjct: 97 LRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETVGLTPGREF 156 Query: 451 VSRLPGVLEARIEQGGTNLSGGQRQRLAIARALV 484 R P LSGGQRQR+AIAR LV Sbjct: 157 YWRKP-----------HQLSGGQRQRVAIARTLV 179 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 51.2 bits (121), Expect = 7e-08 Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 9/158 (5%) Query: 329 SPASLVVEDLSVAYDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGR 388 S A +V E+L Y G A+ +SF G ++GP GAGKTT + L + P+ G Sbjct: 3 SEAMVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGE 62 Query: 389 VLLDGEDIQALSLEELRARIAVVFQKPVLFRGTVADNLRWGFPGATEEQMIEALKKAQAW 448 + G I +R I +V Q AD+ G+ + + L ++A Sbjct: 63 AWIAGYSI-VREPGNVRRVIGLVPQ------DLTADDEMSGWDNVYIQARLYGLPSSEAR 115 Query: 449 EFVSRLPGVLE--ARIEQGGTNLSGGQRQRLAIARALV 484 E + L+ + SGG R++L IA +LV Sbjct: 116 ERTREVLDYLDLMEAAHRRVATYSGGMRRKLEIAMSLV 153 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 49.3 bits (116), Expect = 3e-07 Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 16/146 (10%) Query: 347 ALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLDGEDIQALSLEELRA 406 AL +SF G +GP GAGKTT V L + +P GG + G D+ E+R Sbjct: 27 ALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAGFDV-VKERWEVRK 85 Query: 407 RIAVVFQKPVLFRGTVADNLRWGFPGATEEQMIEALKKAQAWEFVSRLPGVLE--ARIEQ 464 RI V+ +V W G + E SR+ VL+ + Sbjct: 86 RIGVML--------SVERGFYWKLTGRENLYYFGRIYGIPQGELKSRIKEVLDLVGLTDL 137 Query: 465 GGTN-----LSGGQRQRLAIARALVR 485 GG + +S G + RL +AR L++ Sbjct: 138 GGADKPFEEMSLGMKARLGLARVLLK 163 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 47.8 bits (112), Expect = 7e-07 Identities = 25/77 (32%), Positives = 37/77 (48%) Query: 335 VEDLSVAYDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLDGE 394 VE L Y AL +SF +G G +GP GAGKTT + L+ + P+ G + G Sbjct: 7 VEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARVFGV 66 Query: 395 DIQALSLEELRARIAVV 411 ++ +R R+ V Sbjct: 67 ELYNPGASGVRRRVGYV 83 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 47.0 bits (110), Expect = 1e-06 Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 26/190 (13%) Query: 314 EESLSLESVQILPSRSPAS--------LVVEDLSVAYDGTPALSDISFEAPAGTRIGVIG 365 EE L+ V LP +P L V +SV DG + ++S E G +G+ G Sbjct: 236 EEELARLMVGTLPPPTPRPPGKVGRELLSVRGVSVVVDGVERVREVSLEVREGEIVGIAG 295 Query: 366 PTGAGKTTLVMALLRMTEPSGGRVLLDGEDIQALSLEELRA---RIAVVFQKPVLFRGTV 422 G G+ LV A++ + P G + + G I+ SL+ RA IA K + +V Sbjct: 296 VAGNGQEELVDAIIGLRRPVRGSIEVQGRRIEG-SLDFYRAGGGYIAGDRGKVLAMDYSV 354 Query: 423 ADNLRWGFPGATEEQMIEA-------LKKAQAWEFVSRLPGVLEARIEQGGTNLSGGQRQ 475 A+N+ + + A++ ++ + + + V+R P R LSGG +Q Sbjct: 355 AENIAFLYYTASKTLLLRRSRLEDLFRRLVERFRLVARSPWTPVGR-------LSGGNQQ 407 Query: 476 RLAIARALVR 485 ++ + ++R Sbjct: 408 KVIVGSEVLR 417 Score = 43.1 bits (100), Expect = 2e-05 Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 7/143 (4%) Query: 343 DGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLDGEDIQALS-L 401 DG AL ++ F AG ++G GAGKTTL+ L +P+ G + + G + Sbjct: 24 DGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYVWGRKVSWRGPW 83 Query: 402 EELRARIAVVFQKPVLFRG-TVADNLRWGFPGATEEQMIEALKKAQAWEFVSRLPGVLEA 460 + +R IA+V+Q+ L TV +N+ + + + + + E RL LE Sbjct: 84 DAIRNGIAMVYQQFRLVESMTVEENIAIYL---SSLGLGRSEARRRTLETAERLG--LEI 138 Query: 461 RIEQGGTNLSGGQRQRLAIARAL 483 + + +L G RQR+ I +AL Sbjct: 139 DLAKTVADLPMGARQRVEIIKAL 161 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 46.6 bits (109), Expect = 2e-06 Identities = 50/155 (32%), Positives = 66/155 (42%), Gaps = 30/155 (19%) Query: 338 LSVAYDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRMTEPSGGRVLLDGEDIQ 397 L VA DG L+ G IGV GP G GKTT V L +P G V ED++ Sbjct: 364 LRVALDGF-TLTSGEGALYGGEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYVEDLR 422 Query: 398 ALSLEELRARIAVVFQKPVLFRGTVADNLRWGFPGATEEQMIEALKKA----QAW---EF 450 V KP P AT EQ+++A A +W E Sbjct: 423 -------------VSYKPQYISPE-------SLPDATVEQVLKAANPAILAPGSWLNLEL 462 Query: 451 VSRLPGVLEARIEQGGTNLSGGQRQRLAIARALVR 485 V R+ L+ +E+ LSGG+ Q++A+A AL R Sbjct: 463 VKRMR--LDKLLERRVRTLSGGELQKVAVAAALAR 495 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 45.4 bits (106), Expect = 4e-06 Identities = 54/183 (29%), Positives = 77/183 (42%), Gaps = 30/183 (16%) Query: 326 PSRSPASLVVEDLSV---AYDG-TPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALLRM 381 P+ + VE+L V Y G A+ D+SF G ++G TG GK+ AL R+ Sbjct: 3 PAECDPIIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRL 62 Query: 382 TEPSG----GRVLLDGE-----DIQALSLEELR----ARIAVVFQKPVLFRGTVADNLRW 428 P G G++ E DI +L +ELR IA +FQ P + A + + Sbjct: 63 IYPPGRIVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDP-----SAALDPLY 117 Query: 429 GFPGATEEQMIEALKKAQAWEFVSRLPGVL--------EARIEQGGTNLSGGQRQRLAIA 480 E M+ + E V R GVL E R++ LSGG +QR I Sbjct: 118 TIGYQVGETMLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIG 177 Query: 481 RAL 483 +L Sbjct: 178 ISL 180 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 41.6 bits (96), Expect = 5e-05 Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 12/162 (7%) Query: 333 LVVEDLSVAYDGTPALSDISFEAPAGTRIGVIGPTGAGKTTLVMALL--RMTEPSGGRVL 390 L V+ L+ L+ + F+ G V+GP G+GK++L ++ + E G +L Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 391 LDGEDIQALSLEELRAR-IAVVFQKPVLFRGTVADNL-------RWGFPGATEEQMIEAL 442 LDGE I+ L EE + I + Q P G +L R G ++ + + Sbjct: 63 LDGESIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKIV 122 Query: 443 KKAQAWEFVSRLPGVLEARIEQGGTNLSGGQRQRLAIARALV 484 K+ +E+ ++L E + SGG+++R + +A++ Sbjct: 123 KR--MYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMI 162 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 486,358 Number of Sequences: 1700 Number of extensions: 19964 Number of successful extensions: 227 Number of sequences better than 1.0e-04: 34 Number of HSP's better than 0.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 172 Number of HSP's gapped (non-prelim): 40 length of query: 572 length of database: 492,079 effective HSP length: 82 effective length of query: 490 effective length of database: 352,679 effective search space: 172812710 effective search space used: 172812710 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718307|ref|YP_003873839.1| hypothetical protein STHERM_c06070 [Spirochaeta thermophila DSM 6192] (146 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600602|ref|NP_147119.1| MarR family transcriptional regulat... 39 4e-05 >gi|14600602|ref|NP_147119.1| MarR family transcriptional regulator [Aeropyrum pernix K1] Length = 196 Score = 39.3 bits (90), Expect = 4e-05 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 6/92 (6%) Query: 18 KVFRSLLAEE----GVYPGQPGILFHLFHHP--HTDQKGIAEALGITPASATVMLRRMEQ 71 + +R L+A E G+ P Q IL ++++ P H + LG+ + + +R + Sbjct: 19 RAYRILIARESYKHGLTPLQASILLYIYNSPPNHRTISSLVRELGVKQPTISDSVRALIS 78 Query: 72 AGLITRARDPHDRRRILVSLTPDGRIKVERLK 103 GL+T DRR ++ LTP G E LK Sbjct: 79 KGLVTYEPHRSDRRVKILKLTPKGVEIAESLK 110 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 146,788 Number of Sequences: 1700 Number of extensions: 6199 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 1 length of query: 146 length of database: 492,079 effective HSP length: 69 effective length of query: 77 effective length of database: 374,779 effective search space: 28857983 effective search space used: 28857983 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718308|ref|YP_003873840.1| transcriptional regulator, PadR family [Spirochaeta thermophila DSM 6192] (105 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431422|ref|NP_147893.2| PadR family transcriptional regula... 39 4e-05 >gi|118431422|ref|NP_147893.2| PadR family transcriptional regulator [Aeropyrum pernix K1] Length = 173 Score = 38.5 bits (88), Expect = 4e-05 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 23/96 (23%) Query: 31 LAMIRELKRHGYEL--------------SPGSLYPALHGLEAEGFLSSE---ERLVDGRR 73 L ++ E HGYE+ +PG+LYP L L+ EG + E + V G R Sbjct: 25 LRVLAERPYHGYEIMNRIEEITNGVWRPAPGTLYPLLDQLKREGLIRVERMDRKGVKGGR 84 Query: 74 RRYYVITEEGRR-----VLEMARHRIGELVREVLHG 104 R Y +TE+G R + E AR ++ L+ ++ G Sbjct: 85 RIVYALTEDGWRRLADIMFEKAR-KVDYLIYYIIEG 119 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.143 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 114,683 Number of Sequences: 1700 Number of extensions: 4817 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 1 length of query: 105 length of database: 492,079 effective HSP length: 64 effective length of query: 41 effective length of database: 383,279 effective search space: 15714439 effective search space used: 15714439 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718309|ref|YP_003873841.1| transmembrane protein [Spirochaeta thermophila DSM 6192] (409 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431942|ref|NP_148727.2| hypothetical protein APE_2615.1 [A... 144 4e-36 >gi|118431942|ref|NP_148727.2| hypothetical protein APE_2615.1 [Aeropyrum pernix K1] Length = 376 Score = 144 bits (363), Expect = 4e-36 Identities = 107/357 (29%), Positives = 152/357 (42%), Gaps = 22/357 (6%) Query: 21 VLFGVVSLLADMTYEGARSLVGQFMQXXXXXXXXXXXXXXXXXXXXYAIRLFSGKLADR- 79 VL G+VSL AD+TYEGAR +VG +++ Y RLF G A R Sbjct: 9 VLLGLVSLFADLTYEGARGIVGPYLEFLEAGLVVAAAVSVGDLVA-YVARLFGGLFAYRV 67 Query: 80 --TRRYWTVAIAGYAVQLGAIPLLALVGRWELAVLLIFAERLGKGLRNPSRDALLSYAAS 137 + YW + GY V L A+PLLA GRWE A LL+ ER GKG+R P+RDA+L+ + Sbjct: 68 GSSGAYWGLVFLGYTVNLVAVPLLAFAGRWEEAFLLVLLERAGKGVRAPARDAILAEVSG 127 Query: 138 RTGRGLGFGLHEAMDQIXXXXXXXXXXXXXXXTGTRGAGSEATYRLGFALLGIPXXXXXX 197 GRG+ + +HEAMDQ+ + G G Y FALLG+P Sbjct: 128 GLGRGVVYAVHEAMDQVGAIAGPLLVMAAL----SSGFG----YSGVFALLGVPALVSLL 179 Query: 198 XXXXXRFLFPRPSDLEASSHA-PHLGRTTFSPAYGWYXXXXXXXXXGVADFPLVAFHLGR 256 L+PR E P GR A G + +F Sbjct: 180 LLTLAYILYPRLKSAEKPPGGYPPFGRVAPLAA------AAGLSMAGFIHWIHASFRYSV 233 Query: 257 AGALPEPLIPXXXXXXXXXXXXXXXXXXXXXXRIGFAVLPVMWTLEVFTAPLLFLGGPAA 316 G + LI ++ V+ ++ + ++ + LG P A Sbjct: 234 QG-VDASLIAGAYAVAMLVDALAALALGVAYDKVTRGVVALVPIVAAASSLAVLLGAPLA 292 Query: 317 VVAGMALWGISMGTQESVMRAVIADLVPHDRRATAYGLFHTVFGGAWFAGSALMGLL 373 + A LWG++MG +SV R+V+AD + R +G+ + G W G+ M L Sbjct: 293 LAA--ILWGVAMGGFQSVFRSVVADSLEPRLRGLGFGVVYFAMGLGWSVGNIAMASL 347 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.141 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 337,219 Number of Sequences: 1700 Number of extensions: 12666 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 2 length of query: 409 length of database: 492,079 effective HSP length: 79 effective length of query: 330 effective length of database: 357,779 effective search space: 118067070 effective search space used: 118067070 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718310|ref|YP_003873842.1| hypothetical protein STHERM_c06100 [Spirochaeta thermophila DSM 6192] (100 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,187 Number of Sequences: 1700 Number of extensions: 4159 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 100 length of database: 492,079 effective HSP length: 64 effective length of query: 36 effective length of database: 383,279 effective search space: 13798044 effective search space used: 13798044 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718311|ref|YP_003873843.1| hypothetical protein STHERM_c06110 [Spirochaeta thermophila DSM 6192] (489 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 462,057 Number of Sequences: 1700 Number of extensions: 19893 Number of successful extensions: 82 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82 Number of HSP's gapped (non-prelim): 0 length of query: 489 length of database: 492,079 effective HSP length: 80 effective length of query: 409 effective length of database: 356,079 effective search space: 145636311 effective search space used: 145636311 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718312|ref|YP_003873844.1| hypothetical protein STHERM_c06120 [Spirochaeta thermophila DSM 6192] (184 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.143 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 209,684 Number of Sequences: 1700 Number of extensions: 10686 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 184 length of database: 492,079 effective HSP length: 72 effective length of query: 112 effective length of database: 369,679 effective search space: 41404048 effective search space used: 41404048 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718313|ref|YP_003873845.1| transporter [Spirochaeta thermophila DSM 6192] (330 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 336,147 Number of Sequences: 1700 Number of extensions: 14489 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 0 length of query: 330 length of database: 492,079 effective HSP length: 77 effective length of query: 253 effective length of database: 361,179 effective search space: 91378287 effective search space used: 91378287 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718314|ref|YP_003873846.1| M24 family peptidase-like protein [Spirochaeta thermophila DSM 6192] (371 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 401,955 Number of Sequences: 1700 Number of extensions: 17904 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 0 length of query: 371 length of database: 492,079 effective HSP length: 78 effective length of query: 293 effective length of database: 359,479 effective search space: 105327347 effective search space used: 105327347 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718315|ref|YP_003873847.1| tricarboxylic transport [Spirochaeta thermophila DSM 6192] (325 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 350,042 Number of Sequences: 1700 Number of extensions: 15789 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 325 length of database: 492,079 effective HSP length: 77 effective length of query: 248 effective length of database: 361,179 effective search space: 89572392 effective search space used: 89572392 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718316|ref|YP_003873848.1| hypothetical protein STHERM_c06160 [Spirochaeta thermophila DSM 6192] (149 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.332 0.151 0.474 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 163,082 Number of Sequences: 1700 Number of extensions: 7684 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 149 length of database: 492,079 effective HSP length: 69 effective length of query: 80 effective length of database: 374,779 effective search space: 29982320 effective search space used: 29982320 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718317|ref|YP_003873849.1| hypothetical protein STHERM_c06170 [Spirochaeta thermophila DSM 6192] (494 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.146 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 515,768 Number of Sequences: 1700 Number of extensions: 24376 Number of successful extensions: 136 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 136 Number of HSP's gapped (non-prelim): 0 length of query: 494 length of database: 492,079 effective HSP length: 81 effective length of query: 413 effective length of database: 354,379 effective search space: 146358527 effective search space used: 146358527 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718318|ref|YP_003873850.1| oxidoreductase domain-containing protein [Spirochaeta thermophila DSM 6192] (348 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431506|ref|NP_148020.2| alcohol dehydrogenase [Aeropyrum p... 40 9e-05 >gi|118431506|ref|NP_148020.2| alcohol dehydrogenase [Aeropyrum pernix K1] Length = 312 Score = 40.0 bits (92), Expect = 9e-05 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 37/169 (21%) Query: 7 IVGTGGIADKHALAVGQVEGAKLVAVMSRSEERAKAFAERHGCRAYTSMSEFLDDPELDI 66 + G G H + Q+ GA++VA +RS E+A+ E G A TS+ + + +D+ Sbjct: 150 VTGASGGVALHGIQYLQLLGAEVVAY-TRSREKARVLEEELGVEAVTSLDFYRERGRVDV 208 Query: 67 V--SICTPSGYHMEPALE--------AIAAGKHLVVEKPL-----EITL--------ERC 103 V ++ P+ AL G+ + +++P EIT+ + Sbjct: 209 VMETVGAPTINESMRALRPRGRLVLIGNITGEPVTIKRPALLVMREITISGTAAFTRKEW 268 Query: 104 DAIIEAAAQKGVKVMGIFQSRFYDASRV------LKDAVEKGRFGRLVL 146 +A I+ A+ GVK FY A R+ LK+A++ R GR+V+ Sbjct: 269 EAAIKTIAKGGVK-------PFYKAYRLDQINNALKEALQGARIGRIVI 310 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 387,607 Number of Sequences: 1700 Number of extensions: 18127 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 1 length of query: 348 length of database: 492,079 effective HSP length: 78 effective length of query: 270 effective length of database: 359,479 effective search space: 97059330 effective search space used: 97059330 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718319|ref|YP_003873851.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (245 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 240,815 Number of Sequences: 1700 Number of extensions: 10490 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 0 length of query: 245 length of database: 492,079 effective HSP length: 74 effective length of query: 171 effective length of database: 366,279 effective search space: 62633709 effective search space used: 62633709 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718320|ref|YP_003873852.1| hypothetical protein STHERM_c06200 [Spirochaeta thermophila DSM 6192] (318 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 302,735 Number of Sequences: 1700 Number of extensions: 13099 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 0 length of query: 318 length of database: 492,079 effective HSP length: 77 effective length of query: 241 effective length of database: 361,179 effective search space: 87044139 effective search space used: 87044139 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718321|ref|YP_003873853.1| ABC transporter [Spirochaeta thermophila DSM 6192] (232 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 94 3e-21 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 84 4e-18 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 83 7e-18 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 77 3e-16 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 76 6e-16 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 76 6e-16 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 73 5e-15 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 72 2e-14 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 70 5e-14 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 69 8e-14 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 69 1e-13 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 69 1e-13 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 69 1e-13 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 67 3e-13 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 66 9e-13 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 66 9e-13 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 63 6e-12 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 63 6e-12 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 61 2e-11 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 60 5e-11 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 60 5e-11 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 59 1e-10 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 57 5e-10 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 53 8e-09 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 52 2e-08 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 50 5e-08 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 47 3e-07 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 47 3e-07 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 46 7e-07 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 46 7e-07 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 46 9e-07 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 43 8e-06 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 39 9e-05 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 94.0 bits (232), Expect = 3e-21 Identities = 74/233 (31%), Positives = 102/233 (43%), Gaps = 19/233 (8%) Query: 1 MAPLIEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGD 60 M +E RGL +G + + VSFSV +GE I+GPNGSGKTTL+R + G +RP GG Sbjct: 1 MGCTVEARGLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGS 60 Query: 61 VRFA-----------TKGLRIGYVPQDVDTRAQFPATVEEVVCSGLYTXXXXXXXXXXXX 109 VR +GL IG+ PQD + V GL Sbjct: 61 VRVCGYDVWGDGWREARGL-IGFAPQDPPMARRMTGAEYITVVGGL--LGLSPGVARREA 117 Query: 110 XXXXGLLGIRDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYL 169 +LG D+ + + LSGGQR+ EP LD R RE + Sbjct: 118 RRVLEMLGFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWA 177 Query: 170 TLSE-IKGRHPVTVIMVTHDVTGVLPYVQKVLLLDR-RVQFFGTPEEFANQAA 220 +L + KGR TV+ +HD +VL++ R R+ +G P E + A Sbjct: 178 SLRKAFKGR---TVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPRELIQRYA 227 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 83.6 bits (205), Expect = 4e-18 Identities = 70/234 (29%), Positives = 100/234 (42%), Gaps = 18/234 (7%) Query: 5 IEVR--GLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDVR 62 +EVR + A YG E L VSFS E +LGP+G GKTT+++ + G ++P G V Sbjct: 4 VEVRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVF 63 Query: 63 FA--------TKGLRIGYVPQDVDTRAQFP-ATVEEVVCSGLYTXXXXXXXXXXX---XX 110 F + +G+V QD+ A FP TV + V GL Sbjct: 64 FGGVDYTGLPPERRSVGFVFQDL---ALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWAL 120 Query: 111 XXXGLLGIRDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYLT 170 GL R+ +R+ LSGGQ+QR EP LD + R+ Sbjct: 121 ETVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAE 180 Query: 171 LSEIKGRHPVTVIMVTHDVTGVLPYVQK-VLLLDRRVQFFGTPEEFANQAAQHY 223 L ++ + T+I VTHD + V++ D R+ GTP E + A Y Sbjct: 181 LKRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEVYTRPANVY 234 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 82.8 bits (203), Expect = 7e-18 Identities = 67/230 (29%), Positives = 98/230 (42%), Gaps = 20/230 (8%) Query: 1 MAPLIEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGD 60 MA L+EVRGL Y ++VL V S+ GE LVI+GP+GSGK+TL++ + V P G Sbjct: 1 MARLLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGS 60 Query: 61 VRFATKGL-------------RIGYVPQDVDTRAQFP--ATVEEVVCSGLYTXXXXXXXX 105 + F + +IGY+PQ + + FP + + Sbjct: 61 IVFRGVDVTRLSGSQLRMVRRKIGYLPQ---SYSLFPHMTVLRNITYPLEKALGLSRRDA 117 Query: 106 XXXXXXXXGLLGIRDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRE 165 +LGI DL + LSGGQ+QR EPT ALDP +R Sbjct: 118 EERAVKYLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRA 177 Query: 166 CFYLTLSEIKGRHPVTVIMVTHDVTGVLPYVQKVLLL-DRRVQFFGTPEE 214 L + +I+VTH+ + ++ + D V+ G P E Sbjct: 178 DVLEALFRV-ATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSE 226 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 77.4 bits (189), Expect = 3e-16 Identities = 64/238 (26%), Positives = 96/238 (40%), Gaps = 14/238 (5%) Query: 3 PLIEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDVR 62 P +E G+ G + VL DVS +V G ++GPNG+GKTTL RTLLG R G V Sbjct: 7 PAVEAEGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVA 66 Query: 63 FATKGL---------RIGYVPQDVDTRAQFPATVEEVVCSGLYTXXXXXXXXXXXXXXXX 113 + + R+ Y+P+D + T E + LY Sbjct: 67 LLGEPVERAGGSLFRRVAYLPEDGEPYRNM--TGHEFL--RLYASIYGVEDLEGYLEEAS 122 Query: 114 GLLGIRDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYLTLSE 173 L G+ +R+ + S G R+R EPT LDP L E Sbjct: 123 RLSGLGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKE 182 Query: 174 IKGRHPVTVIMVTHDVTGVLPYVQKVLLLDR-RVQFFGTPEEFANQAAQHYFSHGEVA 230 RH VTV++ +H++ V ++ ++ R+ + G+P E + VA Sbjct: 183 YSERHGVTVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGEAVRRTGASSLEEAYVA 240 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 76.3 bits (186), Expect = 6e-16 Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 13/221 (5%) Query: 4 LIEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDVRF 63 ++ L YG + VSF + GE +LGPNG+GKTT ++ L +RP G+ Sbjct: 6 MVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWI 65 Query: 64 ATKGL---------RIGYVPQDVDTRAQFPATVEEVVCSGLYTXXXXXXXXXXXXXXXXG 114 A + IG VPQD+ + + + LY Sbjct: 66 AGYSIVREPGNVRRVIGLVPQDLTADDEMSGWDNVYIQARLY--GLPSSEARERTREVLD 123 Query: 115 LLGIRDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYLTLSEI 174 L + + +R+ SGG R++ EPT LD +R + + ++ Sbjct: 124 YLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDL 183 Query: 175 KGRHPVTVIMVTHDVTGVLPYVQKVLLLDR-RVQFFGTPEE 214 K R VT+++ TH + +V ++DR R+ GTPEE Sbjct: 184 K-RSAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEE 223 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 76.3 bits (186), Expect = 6e-16 Identities = 61/217 (28%), Positives = 90/217 (41%), Gaps = 11/217 (5%) Query: 5 IEVRGLAAGYGTQE-VLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDVRF 63 + + G+ A Y T VL VSFS++ G + +LGPNGSGKTTL+R L G ++P G V Sbjct: 6 VRLEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEV 65 Query: 64 ATK-----GLRIGYVP--QDVDTRAQFPATVEEVVCSGLYTXXXXXXXXXXXXXXXXGLL 116 +GY P +VD R + V + G+ G + Sbjct: 66 CGSPPGRVRRMLGYAPASPEVDPRLK-AVEVALLYRYGVSEGVAWGRRDWEEVLAALGEM 124 Query: 117 GIRDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYLTLSEIKG 176 G+ +L +R LS GQR+ EP LD L L ++G Sbjct: 125 GVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRSLRG 184 Query: 177 RHPVTVIMVTHDVTGVLPYVQKVLLLDRRVQFFGTPE 213 R T++ THD + ++L + + G PE Sbjct: 185 R--ATIVYTTHDPLAAMAADSVIMLREGLLHAQGPPE 219 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 73.2 bits (178), Expect = 5e-15 Identities = 60/227 (26%), Positives = 93/227 (40%), Gaps = 9/227 (3%) Query: 5 IEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDVRFA 64 I + + +G L VS ++ +GE +LGP+G GKTT +R + GF P G V Sbjct: 4 IRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIG 63 Query: 65 TKGLRIGYVPQDVDTRAQFP-------ATVEEVVCSGLYTXXXXXXXXXXXXXXXXGLLG 117 ++ + + P + +T F V + + GL LL Sbjct: 64 SRDVTM-LKPYERNTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWAAELLE 122 Query: 118 IRDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYLTLSEIKGR 177 I L + LSGGQ+QR EP LD R + ++ R Sbjct: 123 IDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQKR 182 Query: 178 HPVTVIMVTHDVTGVLPYVQKVLLLDR-RVQFFGTPEEFANQAAQHY 223 VT++ VTHD L +V +++R RV+ GTP E + A ++ Sbjct: 183 LGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVYEKPATYF 229 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 71.6 bits (174), Expect = 2e-14 Identities = 67/213 (31%), Positives = 82/213 (38%), Gaps = 20/213 (9%) Query: 1 MAPLIEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGD 60 M +IEV GL YG+ E L VSFSV GE LGPNG+GKTT +R L+GF RP G Sbjct: 1 MGVVIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGS 60 Query: 61 VRFATKGL----------RIGYVPQDVDTRAQFPATVEEVVCSGLYTXXXXXXXXXXXXX 110 R L R+GYVP + + V G Sbjct: 61 ARVFGVELYNPGASGVRRRVGYVPGEFEFYGG--------VSGGRMLDYWCRLVGGCSRG 112 Query: 111 XXXGLLGIRDLRRKR-LDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYL 169 LL L +R + S G +Q EPT LDP R L Sbjct: 113 VVRELLEAFPLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARG-RVL 171 Query: 170 TLSEIKGRHPVTVIMVTHDVTGVLPYVQKVLLL 202 K R VTV +H ++ V +V LL Sbjct: 172 DFVRSKAREGVTVFFSSHVLSEVQRVADRVGLL 204 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 70.1 bits (170), Expect = 5e-14 Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 14/220 (6%) Query: 5 IEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDV--- 61 + V L Y + VL+ V+ + I+GPNG+GKTT ++ +LG ++P G V Sbjct: 3 VRVEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLD 62 Query: 62 ------RFATKGLRIGYVPQDVDTRAQFPATVEEVVCSGLYTXXXXXXXXXXXXXXXXGL 115 R G GYVPQ+ P TV E V + L Sbjct: 63 GFEATGRPEMVGRYAGYVPQNPSAPKLSPMTVREFVETSLRLRGVTRARERAVEVLHT-- 120 Query: 116 LGIR-DLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYLTLSEI 174 LGIR ++ RL LS G QR EP ++DP R ++ + Sbjct: 121 LGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAGL 180 Query: 175 KGRHPVTVIMVTHDVTGVLPYVQKVLLLDRRVQFFGTPEE 214 V+M +HD + +L + +++++R + G PEE Sbjct: 181 ARER--LVLMTSHDPSLLLGHTDIIVVINRDLIASGPPEE 218 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 69.3 bits (168), Expect = 8e-14 Identities = 59/226 (26%), Positives = 92/226 (40%), Gaps = 11/226 (4%) Query: 1 MAPLIEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGD 60 M ++E RG+ Y Q VL V V GE + ++GPNG+GKTTL++ LG R GG Sbjct: 1 MDTVLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGG- 59 Query: 61 VRFATKGLRIGYVPQD------VDTRAQFPATVEEVVCSGLYTXXXXXXXXXXXXXXXXG 114 R GL P+ V R P+++ V L + Sbjct: 60 -RVLLNGLDPWREPRAREGVGVVFERPNLPSSMP--VVEFLESAAAIIGSSPSRVDWAIR 116 Query: 115 LLGIRDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYLTLSEI 174 G+ K LS G +QR EPT LDP R L+ + Sbjct: 117 AAGLEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARL 176 Query: 175 KGRHPVTVIMVTHDVTGVLPYVQKV-LLLDRRVQFFGTPEEFANQA 219 H +++++ +H + +L ++ +L R+ G+PE+ +A Sbjct: 177 NREHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDLFRRA 222 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 68.9 bits (167), Expect = 1e-13 Identities = 57/207 (27%), Positives = 87/207 (42%), Gaps = 12/207 (5%) Query: 5 IEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDVRFA 64 +++ G+ +G + DV+ +E+ EF+ ILGP+GSGKTTL+ + G +P G + F Sbjct: 4 VKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFN 63 Query: 65 TKGL--------RIGYVPQDVDTRAQFP-ATVEEVVCSGLYTXXXXXXXXXXXXXXXXGL 115 + IG V Q+ A +P TV E + L L Sbjct: 64 DVDVTDLPPNKRNIGLVFQNY---ALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVAKL 120 Query: 116 LGIRDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYLTLSEIK 175 LGI L + LSGGQ+QR EP LD R L +++ Sbjct: 121 LGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQ 180 Query: 176 GRHPVTVIMVTHDVTGVLPYVQKVLLL 202 +T I VTHD + L ++ ++ Sbjct: 181 KELGITAIYVTHDQSEALAMADRIAII 207 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 68.9 bits (167), Expect = 1e-13 Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 9/227 (3%) Query: 5 IEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDVRFA 64 + + G+ +G L + +++GE +V+LGP+G GKTT +R + G RP G V F Sbjct: 4 VRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFD 63 Query: 65 TKGLRIGYVPQDVDTRAQFPA-------TVEEVVCSGLYTXXXXXXXXXXXXXXXXGLLG 117 + + G P+D + F + V + + L LL Sbjct: 64 GRDV-TGLPPKDRNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAAELLE 122 Query: 118 IRDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYLTLSEIKGR 177 I L + LSGGQ+QR EP LD R + +++ R Sbjct: 123 IDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKLQRR 182 Query: 178 HPVTVIMVTHDVTGVLPYVQKVLLLD-RRVQFFGTPEEFANQAAQHY 223 VT+I VTHD + ++++++ +Q GTP + ++ A + Sbjct: 183 LGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDVYHRPANTF 229 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 68.6 bits (166), Expect = 1e-13 Identities = 61/224 (27%), Positives = 94/224 (41%), Gaps = 17/224 (7%) Query: 5 IEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRP-------M 57 I + G+ +G + V S+++GEF V+LGP+G GKTT +R + G P Sbjct: 4 IRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILID 63 Query: 58 GGDVRFA-TKGLRIGYVPQDVDTRAQFP-ATVEEVVCSGLY----TXXXXXXXXXXXXXX 111 G DV F K + V Q+ A +P +V + + L+ Sbjct: 64 GEDVTFKDPKDRNVAMVFQNY---ALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIE 120 Query: 112 XXGLLGIRDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYLTL 171 LL I DL ++ LSGGQ+QR EP LD R L Sbjct: 121 VAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAEL 180 Query: 172 SEIKGRHPVTVIMVTHDVTGVLPYVQKVLLLDR-RVQFFGTPEE 214 +++ +T + VTHD + ++ ++++ RV GTPEE Sbjct: 181 KKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEE 224 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 67.4 bits (163), Expect = 3e-13 Identities = 53/191 (27%), Positives = 79/191 (41%), Gaps = 20/191 (10%) Query: 20 LTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDVRFATKGLRIGYVPQDVDT 79 LT ++ GE + + GPNG GKTT VRTL G ++P+ G V + LR+ Y PQ + Sbjct: 373 LTSGEGALYGGEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYVEDLRVSYKPQYISP 432 Query: 80 RAQFPATVEEVVCSGLYTXXXXXXXXXXXXXXXXGLLGIRDLRRKRLD--------ALSG 131 + ATVE+V+ L + ++R RLD LSG Sbjct: 433 ESLPDATVEQVL-----------KAANPAILAPGSWLNLELVKRMRLDKLLERRVRTLSG 481 Query: 132 GQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYLTLSEIKGRHPVTVIMVTHDVTG 191 G+ Q+ EP+ LD R + I ++V HD+ Sbjct: 482 GELQKVAVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALVVEHDLM- 540 Query: 192 VLPYVQKVLLL 202 +L YV ++L Sbjct: 541 ILDYVSDRIML 551 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 65.9 bits (159), Expect = 9e-13 Identities = 64/232 (27%), Positives = 97/232 (41%), Gaps = 21/232 (9%) Query: 1 MAPLIEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGD 60 M +++VR + +G E L VSFSV GE + ++GPNG+GKTTL + G P G Sbjct: 1 MTIILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGR 60 Query: 61 VRFATKGLRIGYVPQDVDTRAQFPAT------------VEEVVCSGLY--TXXXXXXXXX 106 V + KG+ I P +RA T + V+ L Sbjct: 61 VIY--KGVDITGWPAYRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERA 118 Query: 107 XXXXXXXGLLGIRDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTREC 166 GL G D+ K L+ + +++R E L PR + Sbjct: 119 MEAIDMVGLAGKEDILAKDLNLI---EKKRLELARALATQPELLLLDEIAAGLRPREVDD 175 Query: 167 FYLTLSEIKGRHPVTVIMVTHDVTGVLPYVQKVLLLDRRVQFF-GTPEEFAN 217 TL EI R +T+IMV H + V+ + ++V++L + GTP E A+ Sbjct: 176 LVYTLLEISKR-GITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVAS 226 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 65.9 bits (159), Expect = 9e-13 Identities = 58/240 (24%), Positives = 94/240 (39%), Gaps = 28/240 (11%) Query: 4 LIEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDVRF 63 ++ V L +G L V+ +E G+ +++GPNGSGKTTLV + GF +P GG V F Sbjct: 6 ILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLF 65 Query: 64 ATKGL---------RIGYVP--------------QDVDTRAQFPATVEEVVCSGLYTX-- 98 + + ++G V ++V T A P E V +GL Sbjct: 66 KGRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPG--ENVYLAGLARRLW 123 Query: 99 XXXXXXXXXXXXXXXGLLGIRDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGA 158 G +G+ + +R LSGGQ + EP Sbjct: 124 LGFEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAG 183 Query: 159 LDPRTRECFYLTLSEIKGRHPVTVIMVTHDVTGVLPYVQKVLLLDR-RVQFFGTPEEFAN 217 ++PR + + +T +++ H + V YV +V + +V G P+E N Sbjct: 184 VNPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEVLN 243 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 63.2 bits (152), Expect = 6e-12 Identities = 56/185 (30%), Positives = 74/185 (40%), Gaps = 23/185 (12%) Query: 20 LTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDV----------------RF 63 L +VS SV GE L I+GP+GSGKTTL+ + G RP G V RF Sbjct: 30 LREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGEELRRF 89 Query: 64 ATKGLRIGYVPQDVDTRAQFPATVEEVVCSGLYTXXXXXXXXXXXXXXXXGLLGIRDLRR 123 + R+GYV Q + A +E + L +G+ R Sbjct: 90 RLE--RVGYVFQQHNLIPTLTA-LENI----LLPMALAGKANRLRGQELLRRVGLGGKER 142 Query: 124 KRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYLTLSEIKGRHPVTVI 183 + + LSGG++QR EPTG LD T E L E TV+ Sbjct: 143 RYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEAHSRGKTVV 202 Query: 184 MVTHD 188 + THD Sbjct: 203 LTTHD 207 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 63.2 bits (152), Expect = 6e-12 Identities = 60/224 (26%), Positives = 93/224 (41%), Gaps = 18/224 (8%) Query: 4 LIEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDVRF 63 +I++ ++AGYG + L DVS + G VI+GPNG+GK+TL++T+ GF G V F Sbjct: 5 IIKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLF 64 Query: 64 ATKGLRIGYVPQDVDTRAQFPATV---------EEVVCSGLYTXXXXXXXXXXXXXXXXG 114 + + ++P RA+ T E V L Sbjct: 65 --ENTDVTHMPP--HDRAKIGMTFIFQLENIFRELTVYENLRLAGYDLPEDVFRDRLEEV 120 Query: 115 LLGIRDLRRK---RLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYLTL 171 L+ + + LSGG+RQ EPT L P+ + L+ Sbjct: 121 FSMFPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAK-EVLSY 179 Query: 172 SEIKGRHPVTVIMVTHDVTGVLPYVQK-VLLLDRRVQFFGTPEE 214 I + TV++V +V L K VL+++ R+ F G EE Sbjct: 180 VRILNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDGPAEE 223 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 61.2 bits (147), Expect = 2e-11 Identities = 56/210 (26%), Positives = 84/210 (40%), Gaps = 11/210 (5%) Query: 5 IEVRGLAAGYGTQ-EVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDV-- 61 + +RG+ Y + L +V F++ GE +LG NG+GKTTL+R L G ++P G++ Sbjct: 13 VAMRGIVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYV 72 Query: 62 -------RFATKGLRIGYVPQDVDTRAQFPATVEEVVCSGLYTXXXXXXXXXXXXXXXXG 114 R +R G R TVEE + L + Sbjct: 73 WGRKVSWRGPWDAIRNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRTLETAE 132 Query: 115 LLGIRDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYLTLSEI 174 LG+ K + L G RQR EPT L P E + TL + Sbjct: 133 RLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLRLL 192 Query: 175 KGRHPVTVIMVTHDVTGVLPYVQKVLLLDR 204 K V+V+ +TH + V+ +V +L R Sbjct: 193 KDM-GVSVVYITHKLGEVVRVADRVTVLRR 221 Score = 48.1 bits (113), Expect = 2e-07 Identities = 54/219 (24%), Positives = 84/219 (38%), Gaps = 27/219 (12%) Query: 4 LIEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDVRF 63 L+ VRG++ E + +VS V EGE + I G G+G+ LV ++G RP+ G + Sbjct: 262 LLSVRGVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIE- 320 Query: 64 ATKGLRI-----------GYVPQDVDTRAQFPATVEEVVCSGLYTXXXXXXXXXXXXXXX 112 +G RI GY+ D +V E + YT Sbjct: 321 -VQGRRIEGSLDFYRAGGGYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRRSRLED- 378 Query: 113 XGLLGIRDLRRKRLDA---------LSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRT 163 L R + R RL A LSGG +Q+ PT LD T Sbjct: 379 ---LFRRLVERFRLVARSPWTPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIAT 435 Query: 164 RECFYLTLSEIKGRHPVTVIMVTHDVTGVLPYVQKVLLL 202 LSE+ R +++V+ D+ +L ++ ++ Sbjct: 436 TSFVRNLLSEL-ARQGAGILLVSTDLDEILELSDRIYVM 473 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 60.1 bits (144), Expect = 5e-11 Identities = 57/228 (25%), Positives = 96/228 (42%), Gaps = 18/228 (7%) Query: 3 PLIEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDVR 62 PL+EV+ + YG + L VS V +GE + +LG NG+GKTT + T+ G ++P G + Sbjct: 5 PLLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSII 64 Query: 63 FATKGLR-----------IGYVPQDVDTRAQFP-ATVEEVVCSGLYTXXXXXXXXXXXXX 110 + + + I +VP+ R FP TV E + T Sbjct: 65 WQGRDITGLPAFKRVEEGISHVPEG---RGIFPRLTVYENLRVAASTRRAKEHFQDSLEQ 121 Query: 111 XXXGLLGIRDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPR-TRECFYL 169 ++ R + LSGG++Q EP+ L P+ R+ YL Sbjct: 122 VYTIFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYL 181 Query: 170 TLSEIKGRHPVTVIMVTHDVTGVLPYVQKVLLLDR-RVQFFGTPEEFA 216 S ++ VT+++V +V L + +++ R+ G +E A Sbjct: 182 A-SRLREELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDELA 228 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 60.1 bits (144), Expect = 5e-11 Identities = 55/224 (24%), Positives = 91/224 (40%), Gaps = 25/224 (11%) Query: 4 LIEVRGLAAGY----GTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRP--- 56 +++++ L Y G + VS SV +GE++ I+G +GSGK+TL ++ + P Sbjct: 3 VLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGR 62 Query: 57 -MGGDVRFAT--------------KGLRIGYVPQDVDTRAQFPATVEEVVCSGL--YTXX 99 +GG + ++ +G IG V QD TV + L + Sbjct: 63 IVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLA 122 Query: 100 XXXXXXXXXXXXXXGLLGI-RDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGA 158 L+GI RD LSGGQRQR EPT A Sbjct: 123 SSGSEAESMAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTA 182 Query: 159 LDPRTRECFYLTLSEIKGRHPVTVIMVTHDVTGVLPYVQKVLLL 202 LD + + +++ +TV++VTHD+ Y ++ ++ Sbjct: 183 LDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVM 226 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 58.5 bits (140), Expect = 1e-10 Identities = 59/225 (26%), Positives = 88/225 (39%), Gaps = 24/225 (10%) Query: 5 IEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDV--- 61 + L+ +G + +V F+ G L +LGPNG+GKTTL++T+LG V+P G++ Sbjct: 5 VNASALSKRFGQRYAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVE 63 Query: 62 -------RFATKGLRIGYVPQ-DVDTRAQFPATVEEVVCSGLYTXXXXXXXXXXXXXXXX 113 F RIGYVP+ V P + E + Sbjct: 64 GVNPRSPGFEKLLPRIGYVPELPVVPLWTTPCILLETLAR---LEGYTSVEARVRAREAL 120 Query: 114 GLLGIRDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDP----RTRECFYL 169 ++G+ + LS G R+R EP LDP R RE Sbjct: 121 EVVGLAGECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRE---- 176 Query: 170 TLSEIKGRHPVTVIMVTHDVTGVLPYVQKVLLLDRRVQFFGTPEE 214 L R TVI+ +H + + VL+L F+G+ EE Sbjct: 177 -LLRTVAREGATVIVSSHILRELEDIATHVLVLKTDQLFYGSIEE 220 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 56.6 bits (135), Expect = 5e-10 Identities = 64/232 (27%), Positives = 93/232 (40%), Gaps = 25/232 (10%) Query: 4 LIEVRGLAAGYGTQ-------EVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRP 56 +IE RGL + + E L VSFSV EGE LGPNG+GKTT VR L + P Sbjct: 5 MIEARGLVKRFVSGRIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDP 64 Query: 57 MGGDVRFATKGL---------RIGYVPQDVDTRAQFPATVEEVVCSGLYTXXXXXXXXXX 107 GG+ R A + RIG V V+ + T E + Sbjct: 65 DGGEARVAGFDVVKERWEVRKRIG-VMLSVERGFYWKLTGRENLYYFGRIYGIPQGELKS 123 Query: 108 XXXXXXGLLGIRDL--RRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRE 165 L+G+ DL K + +S G + R EPT LDP + Sbjct: 124 RIKEVLDLVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASAR 183 Query: 166 CFYLTLSEI--KGRHPVTVIMVTHDVTGVLPYVQKV-LLLDRRVQFFGTPEE 214 + + +GR T+ + TH++ +V +++ R+ GTP+E Sbjct: 184 TIRGVIRSLASEGR---TIFITTHNMVEAEMISDRVGIIIGGRIAMEGTPDE 232 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 52.8 bits (125), Expect = 8e-09 Identities = 47/191 (24%), Positives = 73/191 (38%), Gaps = 13/191 (6%) Query: 9 GLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDVR------ 62 G+A + VL VS SV+ GE V+ G NG+GKTT +R L+G + G+ R Sbjct: 19 GVAKSVKGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDP 78 Query: 63 ----FATKGLRIGYVPQDVDTRAQFPATVEEVVCSGLYTXXXXXXXXXXXXXXXXGLLGI 118 F +GY+P+D + + + LY+ GL Sbjct: 79 WGGGFERVKGEVGYLPEDASVYERLTGMENILFYARLYSGWRDVEELVENAVFYSGL--S 136 Query: 119 RDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYLTLSEIKGRH 178 R+ +R S G ++R EPT +DP L + R Sbjct: 137 REDLARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGL-SRE 195 Query: 179 PVTVIMVTHDV 189 +++ THD+ Sbjct: 196 GRAILVTTHDL 206 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 51.6 bits (122), Expect = 2e-08 Identities = 52/227 (22%), Positives = 85/227 (37%), Gaps = 27/227 (11%) Query: 14 YGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDVRF---------- 63 +G L +VS V GE L I+GPNG+GKT+L+ + G +P G V F Sbjct: 11 FGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDITGLKP 70 Query: 64 ---ATKGLRIGY----------VPQDVDTRAQFPATVEEVVCSGLYTXXXX--XXXXXXX 108 T GL + V +++ R P T ++ L+ Sbjct: 71 HQRITLGLSRTFQHSELFHSMTVLENIMVRLH-PWTRGSILEKALWAFRAKRWEVEARER 129 Query: 109 XXXXXGLLGIRDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFY 168 LL + + R + AL G +++ EP L +E Sbjct: 130 AEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEKEDIV 189 Query: 169 LTLSEIKGRHPVTVIMVTHDVTGVLPYVQKVLLLD-RRVQFFGTPEE 214 + E T++++ HD+ V +V+++D +V F G P E Sbjct: 190 RAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHE 236 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 50.1 bits (118), Expect = 5e-08 Identities = 53/209 (25%), Positives = 83/209 (39%), Gaps = 21/209 (10%) Query: 15 GTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDV--RFATKGLRIGY 72 G + + VSF++ GE L I G +GSGK+TL ++LG V P G V R G+ + Sbjct: 20 GIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTS 79 Query: 73 VPQDVDTRAQFPATVEEV------VCSGLYT---------XXXXXXXXXXXXXXXXGLLG 117 + + R V V V + +YT LL Sbjct: 80 MSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELLE 139 Query: 118 IRDLRRKRLD----ALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYLTLSE 173 L R D LSGGQ+QR EPT ALD + L + Sbjct: 140 SVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLKK 199 Query: 174 IKGRHPVTVIMVTHDVTGVLPYVQKVLLL 202 + +++I++THD++ + + V+++ Sbjct: 200 LAWEKNLSIILITHDLSVIAELAETVMIM 228 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 47.4 bits (111), Expect = 3e-07 Identities = 53/246 (21%), Positives = 92/246 (37%), Gaps = 21/246 (8%) Query: 1 MAPLIEVRGLAAGYGTQE-VLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGG 59 M PL+ V + Y V+ ++S SVE+G ++GPNG+GKTTL++ + G ++ G Sbjct: 1 MGPLLNVSNVEIMYHPFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERG 60 Query: 60 DV--------------RFATKGLRIGYVPQDVDTRAQFPATVEEVVCSGLYTXXXXXXXX 105 V R + R G + R T EE + S Y Sbjct: 61 RVTRGSIQLEGEDITNREPDEIARRGVIYVMEGRRIFKELTTEENLVSVAYAAGASRDDI 120 Query: 106 XXXXXXXXGLLGIRDLRRKRLDALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRE 165 L ++ ++ LSGG++Q EP+ L P+ Sbjct: 121 RSVLSYFPRL---KERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITS 177 Query: 166 CFYLTLSEIKGRHPVTVIMVTHDVTGVLPYVQKVLLLDR-RVQFFGTPEEFA--NQAAQH 222 Y T+ + +T+++ + L +++ R+ G+ EE A+ Sbjct: 178 QIYATIKMLHREEGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEELRLDKDVAEF 237 Query: 223 YFSHGE 228 Y G+ Sbjct: 238 YLGMGK 243 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 47.4 bits (111), Expect = 3e-07 Identities = 58/233 (24%), Positives = 89/233 (38%), Gaps = 26/233 (11%) Query: 5 IEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFV-----RPMGG 59 + V GL + +L +SF + G I+GP+GSGK+TL+R + + + G Sbjct: 6 VRVSGLNVWITDKHILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEG 65 Query: 60 DVRFATKGLR----------IGYVPQDVDTRAQFP-ATVEEVVCSG--LYTXXXXXXXXX 106 +V + G V Q+ + FP T+ E V G L+ Sbjct: 66 EVWINNMNVMKEDPYNIRRYTGMVFQEPN---PFPHMTIYENVAIGPKLHGLAKNKKELD 122 Query: 107 XXXXXXXGLLGIRDLRRKRLD----ALSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPR 162 + + D + RL LSGGQRQR EPT +DP Sbjct: 123 EIVEWALKMAHLWDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPV 182 Query: 163 TRECFYLTLSEIKGRHPVTVIMVTHDVTGVLPYVQKVLLL-DRRVQFFGTPEE 214 + ++ E TVI+VTH ++L L + RV +G +E Sbjct: 183 STVKIEQSIVEYAKEEMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKE 235 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 46.2 bits (108), Expect = 7e-07 Identities = 21/48 (43%), Positives = 32/48 (66%) Query: 5 IEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLG 52 +EV+GL A G + VL V F ++ GE ++GPNGSGK++L ++G Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMG 50 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 46.2 bits (108), Expect = 7e-07 Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 1 MAPLIEVRGLAAGYGTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGD 60 MA L+ + + G + VL VS ++ GE +V+ G NGSGKTTL+R G P G Sbjct: 1 MAALLRLENVWKMLGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGR 60 Query: 61 VRF-ATKGLR--IGYV 73 V + +G R +GYV Sbjct: 61 VSWGCPRGPRGCVGYV 76 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 45.8 bits (107), Expect = 9e-07 Identities = 21/47 (44%), Positives = 32/47 (68%) Query: 15 GTQEVLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDV 61 G + + VS S+++GE L ++G +GSGKTTL +T++G RP G V Sbjct: 25 GYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHV 71 Score = 39.3 bits (90), Expect = 9e-05 Identities = 21/64 (32%), Positives = 31/64 (48%) Query: 129 LSGGQRQRTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYLTLSEIKGRHPVTVIMVTHD 188 LSGGQRQR EPT ALD + L E+ ++ +T +++THD Sbjct: 190 LSGGQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHD 249 Query: 189 VTGV 192 ++ V Sbjct: 250 ISVV 253 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 42.7 bits (99), Expect = 8e-06 Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 5/172 (2%) Query: 19 VLTDVSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDVRFATKGLRIGYVPQDVD 78 VL DV+ +V G ++G +G+GKTTL+R +LG +GG+ G + +P + Sbjct: 455 VLKDVNITVNPGSVAAVVGASGAGKTTLLRMILGKALGIGGEGYRPDSG--VVKIPTNTK 512 Query: 79 TRAQFPATVE-EVVCSGLYTXXXXXXXXXXXXXXXXGLLGIRD--LRRKRLDALSGGQRQ 135 A P +E L +G+ D R LS GQ++ Sbjct: 513 AAALLPGELEPSFGGETLLEHVASKLGDPGAAVEVLSSVGLGDAIFFRASFGELSTGQKE 572 Query: 136 RTXXXXXXXXXXXXXXXXEPTGALDPRTRECFYLTLSEIKGRHPVTVIMVTH 187 R E LDP T L ++ +T+I+ T+ Sbjct: 573 RAKLASLLAERPNLLVIDEFMAHLDPLTARRIARKLGKLARSKGITLIVSTN 624 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 39.3 bits (90), Expect = 9e-05 Identities = 19/44 (43%), Positives = 26/44 (59%) Query: 23 VSFSVEEGEFLVILGPNGSGKTTLVRTLLGFVRPMGGDVRFATK 66 VSFS+ GE ++G +G GKTT + +L V+ GG V F K Sbjct: 53 VSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPK 96 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 215,081 Number of Sequences: 1700 Number of extensions: 8384 Number of successful extensions: 144 Number of sequences better than 1.0e-04: 33 Number of HSP's better than 0.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 84 Number of HSP's gapped (non-prelim): 44 length of query: 232 length of database: 492,079 effective HSP length: 74 effective length of query: 158 effective length of database: 366,279 effective search space: 57872082 effective search space used: 57872082 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718322|ref|YP_003873854.1| ABC transporter [Spirochaeta thermophila DSM 6192] (273 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.142 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 153,108 Number of Sequences: 1700 Number of extensions: 3868 Number of successful extensions: 7 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 273 length of database: 492,079 effective HSP length: 75 effective length of query: 198 effective length of database: 364,579 effective search space: 72186642 effective search space used: 72186642 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718323|ref|YP_003873855.1| hypothetical protein STHERM_c06230 [Spirochaeta thermophila DSM 6192] (426 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600678|ref|NP_147198.1| malate dehydrogenase [Aeropyrum per... 261 3e-71 >gi|14600678|ref|NP_147198.1| malate dehydrogenase [Aeropyrum pernix K1] Length = 446 Score = 261 bits (666), Expect = 3e-71 Identities = 163/405 (40%), Positives = 225/405 (55%), Gaps = 28/405 (6%) Query: 17 GKLAVRPTKPCETAEELSLAYTPGVAEPVREIARRPEAVYDYTAKGNLVAVISNXXXXXX 76 GK+ V P P E+ ++ YTPGVAE I + P+ ++ T++ N+VA++++ Sbjct: 24 GKIEVMPKVPVSGVEDFAIWYTPGVAEASIRINKDPDESFELTSRWNMVAIVTDATRVLG 83 Query: 77 XXXXXXXXSKPVMEGKAVLFKRFADIDVFDIEVDTTDPDEFIRTVKLISPTFGGINLEDI 136 + PVMEGKA++FK F +D I +P F VK + P+FGG+NLEDI Sbjct: 84 LGKLLPEAAYPVMEGKALIFKLFGGVDAVPIVHRRREPGAFASLVKDLEPSFGGVNLEDI 143 Query: 137 RAPECFSIERRLIEECDIPVFHDDQHGTAIIATAGLLNACELAGKRLEEVRVVFNGAGAA 196 +P+CF + L E +IPV+HDDQ GTA + AGL+NA ++ GK L E R+V GAGAA Sbjct: 144 ESPKCFYLLDFLRMELEIPVWHDDQQGTAAASLAGLINAFKIVGKNLRESRIVLLGAGAA 203 Query: 197 GISCARMFIAAGVKKEHIVMCDRKGVIHTGRDDL------SPEKAEFAAET------PFR 244 I+ R A GV +IV+ D KGV+H R+D+ + K E A ET P Sbjct: 204 NIALYRFLKAYGVNPRNIVVVDSKGVLHPEREDMDRLLFSNRYKYEIALETEGGGLAPGS 263 Query: 245 TLEEVLRDAD--VFXXXXXXXXXXQGMVRSMAKSPIIFAMANPDPEISYPEAKAVRPDLI 302 +LEE LR AD V + +R M++ PI+FA+ANP PEI EA+ + Sbjct: 264 SLEEALRGADALVAASRPGPGVVKKEWIRGMSRDPIVFALANPTPEIWPWEARDAGA-RV 322 Query: 303 MATGRSDFPNQINNVLGFPFIFRGALDVRATRITEGMKMXXXXXXXXXXXXPVPEEVSRA 362 +ATGRSD PNQ+NN L FP +FRGALDVR+ IT+GM + EE++R Sbjct: 323 VATGRSDLPNQVNNALVFPGVFRGALDVRSRAITDGMAIAAA------------EEIAR- 369 Query: 363 YGGERFTFGPEYIVPKPFDPRVIAYESVAVARAACEEGVARRPIT 407 Y E + I+P D +V + AVA AA E VAR+P T Sbjct: 370 YTEEEIGIEEDRILPPITDWQVHYRVAAAVAWAASREKVARKPRT 414 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 407,830 Number of Sequences: 1700 Number of extensions: 17078 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 1 length of query: 426 length of database: 492,079 effective HSP length: 79 effective length of query: 347 effective length of database: 357,779 effective search space: 124149313 effective search space used: 124149313 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718324|ref|YP_003873856.1| NADH-quinone oxidoreductase subunit E [Spirochaeta thermophila DSM 6192] (164 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 175,650 Number of Sequences: 1700 Number of extensions: 7247 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 164 length of database: 492,079 effective HSP length: 70 effective length of query: 94 effective length of database: 373,079 effective search space: 35069426 effective search space used: 35069426 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718325|ref|YP_003873857.1| NADH-quinone oxidoreductase subunit 1 [Spirochaeta thermophila DSM 6192] (418 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 478,587 Number of Sequences: 1700 Number of extensions: 23972 Number of successful extensions: 64 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 0 length of query: 418 length of database: 492,079 effective HSP length: 79 effective length of query: 339 effective length of database: 357,779 effective search space: 121287081 effective search space used: 121287081 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718326|ref|YP_003873858.1| hypothetical protein STHERM_c06260 [Spirochaeta thermophila DSM 6192] (596 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 597,366 Number of Sequences: 1700 Number of extensions: 27028 Number of successful extensions: 131 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 131 Number of HSP's gapped (non-prelim): 0 length of query: 596 length of database: 492,079 effective HSP length: 82 effective length of query: 514 effective length of database: 352,679 effective search space: 181277006 effective search space used: 181277006 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718327|ref|YP_003873859.1| ferrous iron transport protein A [Spirochaeta thermophila DSM 6192] (106 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.143 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 123,656 Number of Sequences: 1700 Number of extensions: 6200 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 106 length of database: 492,079 effective HSP length: 65 effective length of query: 41 effective length of database: 381,579 effective search space: 15644739 effective search space used: 15644739 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718328|ref|YP_003873860.1| ferrous iron transport protein B [Spirochaeta thermophila DSM 6192] (747 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 659,560 Number of Sequences: 1700 Number of extensions: 27345 Number of successful extensions: 111 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111 Number of HSP's gapped (non-prelim): 0 length of query: 747 length of database: 492,079 effective HSP length: 84 effective length of query: 663 effective length of database: 349,279 effective search space: 231571977 effective search space used: 231571977 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718329|ref|YP_003873861.1| iron-dependent repressor [Spirochaeta thermophila DSM 6192] (156 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 147,022 Number of Sequences: 1700 Number of extensions: 5725 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 156 length of database: 492,079 effective HSP length: 70 effective length of query: 86 effective length of database: 373,079 effective search space: 32084794 effective search space used: 32084794 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718330|ref|YP_003873862.1| hypothetical protein STHERM_c06300 [Spirochaeta thermophila DSM 6192] (430 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601099|ref|NP_147625.1| voltage-gated potassium channel [Ae... 55 3e-09 >gi|14601099|ref|NP_147625.1| voltage-gated potassium channel [Aeropyrum pernix K1] Length = 295 Score = 55.5 bits (132), Expect = 3e-09 Identities = 27/91 (29%), Positives = 47/91 (51%) Query: 135 LRLLSLVGFILLAAHGIACGWMSLQPPSESPAGTRYLSAFYWTITTLTTIGYGDITPSTP 194 +R L G ++L A ++ P + + A +W + T TT+GYGD+ P+TP Sbjct: 161 IRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATP 220 Query: 195 IQTVYTIVIELLGAAMYGLVIGNIASLVSKL 225 I V I + L G + L+IG ++++ K+ Sbjct: 221 IGKVIGIAVMLTGISALTLLIGTVSNMFQKI 251 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 361,195 Number of Sequences: 1700 Number of extensions: 14941 Number of successful extensions: 48 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 1 length of query: 430 length of database: 492,079 effective HSP length: 79 effective length of query: 351 effective length of database: 357,779 effective search space: 125580429 effective search space used: 125580429 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718331|ref|YP_003873863.1| hypothetical protein STHERM_c06310 [Spirochaeta thermophila DSM 6192] (219 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.143 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 220,572 Number of Sequences: 1700 Number of extensions: 9940 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 0 length of query: 219 length of database: 492,079 effective HSP length: 73 effective length of query: 146 effective length of database: 367,979 effective search space: 53724934 effective search space used: 53724934 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718332|ref|YP_003873864.1| hypothetical protein STHERM_c06320 [Spirochaeta thermophila DSM 6192] (229 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600627|ref|NP_147144.1| protease I [Aeropyrum pernix K1] 75 1e-15 >gi|14600627|ref|NP_147144.1| protease I [Aeropyrum pernix K1] Length = 180 Score = 75.5 bits (184), Expect = 1e-15 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 1/170 (0%) Query: 61 MIIAHENFRDXXXXXXXXXXXDXXXXXXXXXXXRTPATGMLGARVTPDKTLQEIRVDDYD 120 +II+ + F D + R G +G +V + +E++ +++D Sbjct: 5 LIISADGFEDVELLYPYYRLVEAGFETLVAAPSRGEIKGKMGYKVEAKLSFEEVKPEEFD 64 Query: 121 AVIFVGGTGAQEYFSNRQALDLARQAYEKGKIVGAICIAPSILARAGILRGKRATCWSGE 180 ++ GG + + AL++ R +EK K V IC P +L AG+++G+R T + G Sbjct: 65 VLVIPGGRAPERVRLHEAALNIVRHFFEKNKPVATICHGPQVLISAGVVKGRRLTSYWGV 124 Query: 181 SGTLLANGATYTGRPVERDGRIITANGPSAARQFGRALVEALSA-GVTSP 229 ++A G + PV DG ++++ P + R + L A G+ +P Sbjct: 125 KDDVIAAGGNWVDEPVVVDGNLVSSRYPPDIPYWMREFMRLLEARGLLAP 174 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 208,850 Number of Sequences: 1700 Number of extensions: 8616 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 1 length of query: 229 length of database: 492,079 effective HSP length: 74 effective length of query: 155 effective length of database: 366,279 effective search space: 56773245 effective search space used: 56773245 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718333|ref|YP_003873865.1| hypothetical protein STHERM_c06330 [Spirochaeta thermophila DSM 6192] (270 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 254,254 Number of Sequences: 1700 Number of extensions: 10665 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 0 length of query: 270 length of database: 492,079 effective HSP length: 75 effective length of query: 195 effective length of database: 364,579 effective search space: 71092905 effective search space used: 71092905 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718334|ref|YP_003873866.1| transporter [Spirochaeta thermophila DSM 6192] (452 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 394,303 Number of Sequences: 1700 Number of extensions: 15314 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 0 length of query: 452 length of database: 492,079 effective HSP length: 80 effective length of query: 372 effective length of database: 356,079 effective search space: 132461388 effective search space used: 132461388 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718335|ref|YP_003873867.1| phosphoribosyl-AMP cyclohydrolase [Spirochaeta thermophila DSM 6192] (138 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.135 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 151,685 Number of Sequences: 1700 Number of extensions: 6001 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 138 length of database: 492,079 effective HSP length: 68 effective length of query: 70 effective length of database: 376,479 effective search space: 26353530 effective search space used: 26353530 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718336|ref|YP_003873868.1| hypothetical protein STHERM_c06360 [Spirochaeta thermophila DSM 6192] (529 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 575,911 Number of Sequences: 1700 Number of extensions: 27410 Number of successful extensions: 99 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99 Number of HSP's gapped (non-prelim): 0 length of query: 529 length of database: 492,079 effective HSP length: 81 effective length of query: 448 effective length of database: 354,379 effective search space: 158761792 effective search space used: 158761792 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718337|ref|YP_003873869.1| glucokinase [Spirochaeta thermophila DSM 6192] (357 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 385,091 Number of Sequences: 1700 Number of extensions: 18170 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 0 length of query: 357 length of database: 492,079 effective HSP length: 78 effective length of query: 279 effective length of database: 359,479 effective search space: 100294641 effective search space used: 100294641 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718338|ref|YP_003873870.1| hypothetical protein STHERM_c06380 [Spirochaeta thermophila DSM 6192] (172 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 177,459 Number of Sequences: 1700 Number of extensions: 8022 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 172 length of database: 492,079 effective HSP length: 71 effective length of query: 101 effective length of database: 371,379 effective search space: 37509279 effective search space used: 37509279 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718339|ref|YP_003873871.1| hypothetical protein STHERM_c06390 [Spirochaeta thermophila DSM 6192] (208 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.144 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 219,094 Number of Sequences: 1700 Number of extensions: 9485 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 0 length of query: 208 length of database: 492,079 effective HSP length: 73 effective length of query: 135 effective length of database: 367,979 effective search space: 49677165 effective search space used: 49677165 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718340|ref|YP_003873872.1| hypothetical protein STHERM_c06400 [Spirochaeta thermophila DSM 6192] (308 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601886|ref|NP_148430.1| arsenical pump-driving ATPase [Aero... 59 2e-10 >gi|14601886|ref|NP_148430.1| arsenical pump-driving ATPase [Aeropyrum pernix K1] Length = 197 Score = 58.5 bits (140), Expect = 2e-10 Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 12/144 (8%) Query: 120 IKEIVSRYQE--YDLVVFDTPPTALTLRFLALPFLSEKWLEGLKGLRTAILERRQTVLRL 177 +++I+ Y++ + VV DTPPT LTLR L+LP L WLE L G+R I+ R + R Sbjct: 3 LRKILELYRDSRFKYVVVDTPPTGLTLRILSLPRLYTFWLESLIGIRERIVSLRYVIAR- 61 Query: 178 DPEAPVRGARRPE-EDQLYHRLLGLQRRLASLRELFL--ARSTVVLVVNPDELSLRESIR 234 R PE +D + +L +Q R A L + R++ +V P+ L + E+ + Sbjct: 62 ------SIGREPEMDDPVLDKLREMQDRYAKLSNDLVERERTSFAIVATPEPLPVYEARK 115 Query: 235 IRDELTGLRIPIAVVCHNKAREAD 258 + L + +++ N+ A+ Sbjct: 116 TVEFLESMGAKPSIIVVNRILPAE 139 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 295,570 Number of Sequences: 1700 Number of extensions: 13130 Number of successful extensions: 48 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 1 length of query: 308 length of database: 492,079 effective HSP length: 77 effective length of query: 231 effective length of database: 361,179 effective search space: 83432349 effective search space used: 83432349 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718341|ref|YP_003873873.1| hypothetical protein STHERM_c06410 [Spirochaeta thermophila DSM 6192] (93 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601884|ref|NP_148428.1| hypothetical protein APE_2163 [Aero... 50 1e-08 >gi|14601884|ref|NP_148428.1| hypothetical protein APE_2163 [Aeropyrum pernix K1] Length = 107 Score = 49.7 bits (117), Expect = 1e-08 Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 6 RRLWTALKETITQVHRRKATEILLFELSEMENIFALLVLGSFIGIPSPNPILTLELLPHM 65 R ++ L T+ + A + L EL E+EN+FA +++GS G+P L +E+ +M Sbjct: 22 RGMFHELAVTLKAMMSGHAVDTLQMELEELENVFATVIIGSLAGMPLAPLGLAVEVAGYM 81 Query: 66 EEELWTMVSRADFAQDPLGGLISL 89 EEE+ TM+ + +D L SL Sbjct: 82 EEEISTMIEKHAKYRDGLAAYASL 105 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,890 Number of Sequences: 1700 Number of extensions: 3061 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 1 length of query: 93 length of database: 492,079 effective HSP length: 61 effective length of query: 32 effective length of database: 388,379 effective search space: 12428128 effective search space used: 12428128 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718342|ref|YP_003873874.1| carbon starvation protein A-like protein [Spirochaeta thermophila DSM 6192] (563 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431762|ref|NP_148427.2| carbon starvation protein A [Aerop... 398 e-112 >gi|118431762|ref|NP_148427.2| carbon starvation protein A [Aeropyrum pernix K1] Length = 602 Score = 398 bits (1022), Expect = e-112 Identities = 237/552 (42%), Positives = 318/552 (57%), Gaps = 42/552 (7%) Query: 5 IVLGALVFYFIFYFSYGRNI-QKKLLKSHEAPEAPAKRLYDGVDYVPTSKYVLFGHHFAS 63 +V L Y + Y YGRNI Q+K++++ E PA +DGVDYVP ++VLFGHHFAS Sbjct: 6 LVAVILAIYAVAYLFYGRNILQEKVVRASPERETPAIAKFDGVDYVPAHRFVLFGHHFAS 65 Query: 64 IAGAGPITGPAMAVAXXXXXXXXXXXXXNVFIGAVHDYLSLTVSVRYDGRSVQYVAQDLI 123 IAGAGPI GPA+A+A NVF+GAVHDYLSL SVRY G S+ V ++L+ Sbjct: 66 IAGAGPIVGPAIAMAYGWLLPLVWVLFGNVFMGAVHDYLSLMASVRYGGISIVSVGENLM 125 Query: 124 GKVAGKAFGWFILFLCILVVAAFGDIVAGQFASNPHLFPTFLFFCIAAIFTGLIMYRTKV 183 G+ A F ++LF ILV AAF I A FA +P + + F A+ G++MYR + Sbjct: 126 GRKARYLFLIYVLFTLILVYAAFASIAASLFARDPRVATLSILFMPLALLLGIMMYRMGL 185 Query: 184 GIGYGSIIGAALIVVSFWL----GSMV-----SIPASK------ITWFLVIFVYIIIAAS 228 G+G ++I L++ +F G ++ S+P + W +++ +Y ++AAS Sbjct: 186 GMGPSTVITVVLVIAAFVYSYNHGIVIGTFDPSLPPGEGGWVAYHRWVIILGLYALLAAS 245 Query: 229 LPVNILLQPRDYLNSXXXXXXXXXXXXXXXXXXSSFDSLPVFTSFSAKVIGGQPSPFWPT 288 LPV LLQPRDYLN+ + P +TSF +I GQP+PFWP Sbjct: 246 LPVWYLLQPRDYLNAYILWTGLGLAAIAAILLGTQSLKGPAYTSFQPNIIAGQPTPFWPA 305 Query: 289 VPLVIACGALSGFHSLVASGTSSKQLREEKDALFVGYGGMLTEGFLSTLVVVSIATFG-- 346 +PL+IACG+LSGFHSLVASGT+SKQL E DALFVGYG ML EG LS L V+ +F Sbjct: 306 IPLIIACGSLSGFHSLVASGTTSKQLASELDALFVGYGAMLLEGALSGLAVIIPISFAWN 365 Query: 347 ------NEVFGDPAKVLAAGPLDRFVKSYGAMVSGT-----IPFLFSASFMQLFAALWVS 395 V + LAA P R+ YG ++ T + F SF LFA+L +S Sbjct: 366 APELIQKGVIENNMLDLAAVP--RYAVGYGYTLAKTFEMFGVGFDTGYSFFTLFASLMLS 423 Query: 396 SFALTTLDTTNRLGRYILHELALPLKDRSPGLYSIFQNKWIASFVVATIGLLLA------ 449 + LTTLDT RL R+ EL L + LYSI NKW++S V IG LA Sbjct: 424 MYVLTTLDTGTRLARFAWQELFDWLANVDKNLYSIVTNKWVSSLAVVIIGSALAYPVLEI 483 Query: 450 ---SSGGYTRLWPAFSGANQLLASIAMLTATVWVKRKLNPRYTN--LVFIPAIFLWITVT 504 Y +WPAF+GANQ+LA+IA+LT+ +WV LN R L+ +P++FLW+TVT Sbjct: 484 GAGYKAAYNVVWPAFAGANQMLAAIALLTSALWVYGVLNVRGGTGLLILLPSLFLWVTVT 543 Query: 505 VGLIWYEIVIVP 516 GL W+ +VI+P Sbjct: 544 AGLTWWLMVILP 555 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.141 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 517,504 Number of Sequences: 1700 Number of extensions: 21287 Number of successful extensions: 81 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 1 length of query: 563 length of database: 492,079 effective HSP length: 82 effective length of query: 481 effective length of database: 352,679 effective search space: 169638599 effective search space used: 169638599 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718343|ref|YP_003873875.1| transporter [Spirochaeta thermophila DSM 6192] (319 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyru... 106 9e-25 gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 78 3e-16 gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum... 72 1e-14 gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease... 56 1e-09 gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 42 2e-05 >gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyrum pernix K1] Length = 302 Score = 106 bits (264), Expect = 9e-25 Identities = 62/199 (31%), Positives = 110/199 (55%), Gaps = 7/199 (3%) Query: 125 IATFGAYSFSRTRYRGRGLIQRGVLFVYMFGGILLLIPLYQIFVRMG-WLQTSGGTLAAL 183 ++ AYS SR ++GRG+ G++ ++ F G+ L+I +Y IF +G L G A+ Sbjct: 105 VSLLAAYSISRMEFKGRGVFTAGLIMLHAFPGVALIIGVYMIFRIIGDVLGVLGEEFYAI 164 Query: 184 LIIYLVQT---LPVSLYMLGNYFRTIPFSIEEAALIDGCSRFGTIWRIIIPMSIPALFTV 240 I L + +P+++++ +F IP+ +E +AL+DG SR W I++P+ P + V Sbjct: 165 AYIILARAALEVPMAIWLFKGFFDKIPWELEWSALVDGASRVRVWWSILVPLVKPGIAAV 224 Query: 241 FIYAFMIAWNEYLFASVFLKSYKGLYTLPFGLRSLY-HSKNAIWDRIMAASVLTALPVIP 299 I+ F+ W E+++ VFLK + G+ +LP + + ++N I AA LP I Sbjct: 225 LIFTFLAGWEEFIYFYVFLKPF-GIDSLPTFIEEIVAAAENYQLTIIAAAGTFYLLPTI- 282 Query: 300 IFMAIQKRLVAGLSAGGVK 318 +F + +RL+ +GG+K Sbjct: 283 VFFVLTQRLLLEAYSGGLK 301 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 78.2 bits (191), Expect = 3e-16 Identities = 42/193 (21%), Positives = 92/193 (47%), Gaps = 5/193 (2%) Query: 126 ATFGAYSFSRTRYRGRGLIQRGVLFVYMFGGILLLIPLYQIFVRMGWLQTSGGTLAALLI 185 A+F AY FSR + + + + + ++++PL+ + +G + T G +++ Sbjct: 98 ASFAAYGFSRFSFPLKSYLFLVTILLMALPQQIVVVPLFLLLKNLGLINTFPG----IIL 153 Query: 186 IYLVQTLPVSLYMLGNYFRTIPFSIEEAALIDGCSRFGTIWRIIIPMSIPALFTVFIYAF 245 ++ + ++ + N+F +P +EEAA +DG S F ++I++PMS+P + + + F Sbjct: 154 VHSAWGMAWIIFFMKNFFDILPREVEEAARVDGASDFRIFYKIVLPMSLPGILSASVLQF 213 Query: 246 MIAWNEYLFASVFLKSYKGLYTLPFGLRSLYHSKNAIWDRIMAASVLTALPVIPIFMAIQ 305 W+ + F +FL + + + ++ + W I A SV + ++M +Q Sbjct: 214 TWVWSSFFFELIFLID-PSKWVITQRIANMKGTYLVDWGLIAAGSVFAMAVPLAVYMLLQ 272 Query: 306 KRLVAGLSAGGVK 318 + + G K Sbjct: 273 RYYIRGFVGWAAK 285 >gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum pernix K1] Length = 270 Score = 72.4 bits (176), Expect = 1e-14 Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 11/187 (5%) Query: 129 GAYSFSRTRYRGRGLIQRGVLFVYMFGGILLLIPLYQIFVRMGWLQTSGGTLAALLIIYL 188 G Y+ +R + GR ++ ++ MF I++ + L + F +G TL L + + Sbjct: 90 GGYALARYVFPGRDAVKLAIIATRMFPIIVISVSLLKTFFNLGL----NDTLIGLALAHT 145 Query: 189 VQTLPVSLYMLGNYFRTIPFSIEEAALIDGCSRFGTIWRIIIPMSIPALFTVFIYAFMIA 248 LP + + G+ F IP +EEA +I G S RI +P++ P L ++ F+++ Sbjct: 146 AMALPFVVIITGSIFGGIPRDLEEAGMIFGLSSIMVFLRITLPLAAPGLTAAGMFTFLLS 205 Query: 249 WNEYLFASVFLKSYKGLYTLP-FGLRSLYHSKNAIWDRIMAASVLTALPVIPIFMAIQKR 307 WNE ASV + TLP F L S + I AA+ + LP + +FM + +R Sbjct: 206 WNEVFMASVLTLVNR---TLPAFILNSAF--ATPIEPIRFAAAFMLILPAL-VFMFLARR 259 Query: 308 LVAGLSA 314 + + A Sbjct: 260 YLVTMWA 266 >gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease ModB [Aeropyrum pernix K1] Length = 261 Score = 56.2 bits (134), Expect = 1e-09 Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 20/223 (8%) Query: 92 LARYRDTSDVFPFLQYFRN---XXXXXXXXXXXXXXIATFGAYSFSRTRYRGRGLIQRGV 148 +A RD D+F ++ R+ +AT AY+ +R R LI + Sbjct: 29 MAASRDLIDLFLEERFRRSLVLSLGSSTISSVLAVTLATAPAYAMARQEGRLTRLISQLH 88 Query: 149 LFVYMFGGILLLIPLYQIFVRMGWLQTSGGTLA------ALLIIYLVQTLPVSLYMLGNY 202 L + + L +F R L + TL A+++ L+ T P+++ ML Sbjct: 89 LLLLSIPPVGLGTAALILFTRYPPLNSISETLGLFFSPKAVILAQLLVTTPIAVSMLTGV 148 Query: 203 FRTIPFSIEEAALIDGCSRFGTIWRIIIPMSIPALFTVFIYAFMIAWNEYLFASVFLKSY 262 F +P +EEAA G R + RI++P+S+P + + F A E+ V + Sbjct: 149 FSMVPRELEEAAEAYGAGRLQILIRIVLPLSLPGILSALAVTFFRALGEFGATLVLAGNI 208 Query: 263 KG-LYTLPFGLRSLYHSKNAIWDRIMAASVLTALPVIPIFMAI 304 G TLP A+++ I A V TA + + +A+ Sbjct: 209 PGRTETLPL----------ALYNAISLADVETASAIYTLVLAV 241 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 42.4 bits (98), Expect = 2e-05 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 11/129 (8%) Query: 143 LIQRGVLFVYMFGGILLLIPLYQIFVRMG-------WLQTSGGTLAALLIIYLVQTLPVS 195 ++ G++ +MF + ++PL +F +G W +L +L++ + S Sbjct: 123 MVVGGLIVRFMFDEYVGVVPL--VFKALGVDFLAKTWTNYPQLSLLSLILGSVWLWTGFS 180 Query: 196 LYMLGNYFRTIPFSIEEAALIDGCSRFGTIWRIIIPMSIPALFTVFIYAFMIAWNEYLFA 255 L + +IP S EAA IDG + W+I+ P+ PA T+ + + W+ +F Sbjct: 181 LTVYSAALGSIPSSFIEAARIDGAGHWHIFWKIVFPLVRPA--TIIVVVMTMLWDLKIFD 238 Query: 256 SVFLKSYKG 264 V++ + G Sbjct: 239 IVYVATLGG 247 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.143 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 282,291 Number of Sequences: 1700 Number of extensions: 11609 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 5 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 5 length of query: 319 length of database: 492,079 effective HSP length: 77 effective length of query: 242 effective length of database: 361,179 effective search space: 87405318 effective search space used: 87405318 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718344|ref|YP_003873876.1| transporter [Spirochaeta thermophila DSM 6192] (290 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum... 58 2e-10 gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 55 2e-09 gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyru... 42 1e-05 gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 42 2e-05 >gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum pernix K1] Length = 288 Score = 58.2 bits (139), Expect = 2e-10 Identities = 59/273 (21%), Positives = 125/273 (45%), Gaps = 26/273 (9%) Query: 30 IVYPIFYNIYLSFFDVHVYGANRFIGFKNYLDIVLDR---EFWGAFYTTIVYVIXXXXXX 86 I YPI + ++F N I F+ +D +L EFW A T + I Sbjct: 29 IAYPIIDSFRIAFVK------NGSISFEA-VDFLLYSPLSEFWSALKYTFLLAILVIPTE 81 Query: 87 XXXXXXVALVMNREFPLRGLVRSLILLPYVAPLISVVFSWQFLFDPVNGIVMHTLVEQLR 146 +++ + F R V ++++P ++ W + ++ L+ + Sbjct: 82 TLLALTAVILLFKRFRGRDAVIYVLVMPLALSDLAAGLIWYSMLTGKG--FLNKLLLNMG 139 Query: 147 LLPERINLIGSPKNGI-WVAV-LFSIWKNFPFTYLMLLSRLQAIDQNLYEAAEIDGASAL 204 L+ + I G + ++AV L +W++ +++L + Q I++ ++EAAE+ GAS Sbjct: 140 LISDPIIFFGYENRWLTFLAVYLAEVWRSTAIVFVILFAGAQLINKEVFEAAEVFGASFY 199 Query: 205 QKFWYLTLPELYFVMGAVILLRFIWNFNKFEEIFLLA-PNVKVLSVYTYYTAFTGTLDLG 263 K ++ +P + + A +L+R ++ F F +++LA ++ VL+ YY+ ++L Sbjct: 200 VKLRHILIPMIKPSLQAALLIRTLFAFQVFAVVWILAGRDIPVLAGEAYYS----IVELH 255 Query: 264 K-------GAALAVVQFSILIIFILFYVRKVLK 289 K +A++ SI +++I + +L+ Sbjct: 256 KYDVAALYAIVIALLSASIGVVYIRVFRETLLR 288 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 55.1 bits (131), Expect = 2e-09 Identities = 55/268 (20%), Positives = 108/268 (40%), Gaps = 33/268 (12%) Query: 26 ITGLIVYPIFYNIYLSFFDVHVYGANRFIGFKNYLDIVLDREF---------------WG 70 IT ++ P +YLS + I + Y ++V +R WG Sbjct: 22 ITIFVIAPSIATVYLSL------NVDGHINLEKYAEVVSERSPDKALIMITSRPESPPWG 75 Query: 71 AFYTTIVYVIXXXXXXXXXXXXVALVMNREFPLRGLVRSLILLPYVAPLISVVFSWQFLF 130 A I+++ +A ++ F +V++++ + V P++ +F+F Sbjct: 76 ALIHNIIWMALHIPLVTFLGLFLAYLLKYTFG-SSIVKTIVFIGMVIPMVVGGLIVRFMF 134 Query: 131 DPVNGIVMHTLVEQLRLLPERINLIGSPKNGIWVAVLFSIWKNFPFTYLMLLSRLQAIDQ 190 D G+V + + L + P+ + +L S+W F+ + + L +I Sbjct: 135 DEYVGVVP-LVFKALGVDFLAKTWTNYPQLSLLSLILGSVWLWTGFSLTVYSAALGSIPS 193 Query: 191 NLYEAAEIDGASALQKFWYLTLPELYFVMGAVILLRFIWNFNKFEEIFLL-------APN 243 + EAA IDGA FW + P + V+++ +W+ F+ +++ + N Sbjct: 194 SFIEAARIDGAGHWHIFWKIVFPLVRPATIIVVVMTMLWDLKIFDIVYVATLGGPGGSSN 253 Query: 244 VKVLSVYTYYTAFTGTLDLGKGAALAVV 271 V L +Y Y LD +A+AV+ Sbjct: 254 VLALVMYQY---MARALDYQAASAVAVI 278 >gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyrum pernix K1] Length = 314 Score = 42.4 bits (98), Expect = 1e-05 Identities = 58/276 (21%), Positives = 108/276 (39%), Gaps = 20/276 (7%) Query: 25 VITGLIVYPIFYNIYLSFFDVHVYGANRF----IGFKNYLDIV----LDREFWGAFYTTI 76 ++ P+ +Y SF ++ + + + +G NY +V D F A TT+ Sbjct: 19 IVITFFFLPLLLTVYTSFTNMRNWNVDAYLFDIVGLYNYKVLVHFAKYDPMFRNALITTV 78 Query: 77 VYVIXXXXXXXXXXXXVA-LVMNREFPLRGLVRSLILLPYVAPLISVVFSWQFLFDPVNG 135 V+V +A L E + R L LLP + P+ W + F Sbjct: 79 VFVAVTLVVNVLGGLTLAILTFFLEERISIHYRLLWLLPRMTPVAVYSLLWYYFFHSDAI 138 Query: 136 IVMHTLVEQLRLLPERINLIGS---PKNGIWVAVLFSIWKNFPFTYLMLLSRLQAIDQNL 192 ++ ++ ++ + IN GS P W+ + + F ++ S +++I Sbjct: 139 GTLNRILLLAGVIDKPINW-GSYMLPLGTWWILIFVNGLVGVSFGMIVFYSAIRSIPWEY 197 Query: 193 YEAAEIDGASALQKFWYLTLPELYFVMGAVILLRFIWNFNKFEEIFLL-------APNVK 245 AA +DGAS L + +P + + + V + + + + IFLL + Sbjct: 198 IAAARVDGASNLVIIRRIIVPMIRWHLLFVTVWQMLSLLTTYTHIFLLYEWGVVDRTWGQ 257 Query: 246 VLSVYTYYTAFTGTLDLGKGAALAVVQFSILIIFIL 281 S+ + AF +L +G A A ++I IL Sbjct: 258 TWSLLVFNLAFLPVGELRQGLAAAAATVLVVIGAIL 293 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 41.6 bits (96), Expect = 2e-05 Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 10/156 (6%) Query: 141 LVEQLRLLPERINLIGSPKNGIWVAVLFSIWKNFPFTYLMLLSRLQAIDQNLYEAAEIDG 200 +V L LL + + LI + + ++ S W + + + + + + EAA +DG Sbjct: 131 VVVPLFLLLKNLGLINTFPG---IILVHSAW-GMAWIIFFMKNFFDILPREVEEAARVDG 186 Query: 201 ASALQKFWYLTLP-ELYFVMGAVIL-LRFIWNFNKFEEIFLLAPNVKVLSVYTYYTAFTG 258 AS + F+ + LP L ++ A +L ++W+ FE IFL+ P+ V++ T Sbjct: 187 ASDFRIFYKIVLPMSLPGILSASVLQFTWVWSSFFFELIFLIDPSKWVITQRIANMKGTY 246 Query: 259 TLDLGKGAALAVVQFSI-LIIFIL---FYVRKVLKW 290 +D G AA +V ++ L +++L +Y+R + W Sbjct: 247 LVDWGLIAAGSVFAMAVPLAVYMLLQRYYIRGFVGW 282 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.333 0.148 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 248,170 Number of Sequences: 1700 Number of extensions: 9781 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 4 length of query: 290 length of database: 492,079 effective HSP length: 76 effective length of query: 214 effective length of database: 362,879 effective search space: 77656106 effective search space used: 77656106 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718345|ref|YP_003873877.1| transporter [Spirochaeta thermophila DSM 6192] (458 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430849|ref|NP_146914.2| ABC transporter substrate-binding ... 56 2e-09 >gi|118430849|ref|NP_146914.2| ABC transporter substrate-binding protein [Aeropyrum pernix K1] Length = 468 Score = 55.8 bits (133), Expect = 2e-09 Identities = 85/378 (22%), Positives = 143/378 (37%), Gaps = 63/378 (16%) Query: 38 WTSQTQSDRMATIQLLVDTFQATHPEITINVIPVEENDLPTQIHAASAAGTLPGLVEMGA 97 W+ + Q M ++ F +P +TI +P+ ++ + AG P A Sbjct: 98 WSGKEQEYFMTALE----KFMEENPNVTIKYVPMRAEEVARTLSVQFEAGVTP------A 147 Query: 98 ENAVAFGAEGLLDTAAGTRVIEKVG---KDRFYEGALTLVDDGSGTYYAVPFHGWVQ-GL 153 + + A +++ A VIE G +D + G L V + + VPF W++ G Sbjct: 148 DVVITPWAWWIVEMAQKGHVIEVTGLINEDEYVGGILDNVK-WNNKLWGVPFTMWLKPGF 206 Query: 154 WYRIDWFEEAGLKPPSTWEDMLEAARYFYKPEENQYGILVGTKPEVYAEQCFTHIALSNN 213 WY+ +F + GL P++WE+ L+ E + I+ G H ++ Sbjct: 207 WYKKSFFAKHGLSEPNSWEEFLQLLDQIKGIEGIKNPIVSGDSVGWPLSDVTEHFIIAFG 266 Query: 214 ARLFDR---DGNLVFDSPEMREAIEFYAELAKYTPPG----PQTW-RARDYYFQNKLAMF 265 G + F P++ +E + +LA G P W A + ++ + A++ Sbjct: 267 GPELQYKLITGEVSFTDPQV---VEIFEKLAMLIEQGYFSEPIEWTSAVEKWWAEEYALY 323 Query: 266 FYSTYIMDDLALAEVAQGSLTGENFPELTGAEFDPELVNKTGFVPIITHTQPAGYGVV-- 323 F T+I TG DP N F P+ P GVV Sbjct: 324 FMGTWI----------------------TGMVEDP---NDLAFFPL-----PGARGVVGG 353 Query: 324 VTMGITKGLSEAQLSAVETFLLYLFSENAYVSYLHMAPGGMNPTIKGIAETDRFLEDPRG 383 +E L A + L YL +E V P G PT G++ D+ +G Sbjct: 354 TDYAFIPKYTE-NLEAAKLLLQYLATEGQAVHV--STPAGKVPTWLGVS-VDQLWPPMQG 409 Query: 384 VYKRFGKEKLAQIISGLN 401 V+ + KE I+ L+ Sbjct: 410 VFAKI-KELNMTIVPDLD 426 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 484,196 Number of Sequences: 1700 Number of extensions: 22476 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 1 length of query: 458 length of database: 492,079 effective HSP length: 80 effective length of query: 378 effective length of database: 356,079 effective search space: 134597862 effective search space used: 134597862 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718346|ref|YP_003873878.1| hypothetical protein STHERM_c06460 [Spirochaeta thermophila DSM 6192] (203 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.146 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 195,937 Number of Sequences: 1700 Number of extensions: 8221 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 203 length of database: 492,079 effective HSP length: 73 effective length of query: 130 effective length of database: 367,979 effective search space: 47837270 effective search space used: 47837270 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718347|ref|YP_003873879.1| hypothetical protein STHERM_c06470 [Spirochaeta thermophila DSM 6192] (180 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 139,937 Number of Sequences: 1700 Number of extensions: 4750 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 180 length of database: 492,079 effective HSP length: 71 effective length of query: 109 effective length of database: 371,379 effective search space: 40480311 effective search space used: 40480311 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718348|ref|YP_003873880.1| glutamate synthase-like protein [Spirochaeta thermophila DSM 6192] (526 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 569,835 Number of Sequences: 1700 Number of extensions: 27006 Number of successful extensions: 98 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98 Number of HSP's gapped (non-prelim): 0 length of query: 526 length of database: 492,079 effective HSP length: 81 effective length of query: 445 effective length of database: 354,379 effective search space: 157698655 effective search space used: 157698655 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718349|ref|YP_003873881.1| hypothetical protein STHERM_c06490 [Spirochaeta thermophila DSM 6192] (243 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 264,193 Number of Sequences: 1700 Number of extensions: 11752 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 243 length of database: 492,079 effective HSP length: 74 effective length of query: 169 effective length of database: 366,279 effective search space: 61901151 effective search space used: 61901151 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718350|ref|YP_003873882.1| hypothetical protein STHERM_c06500 [Spirochaeta thermophila DSM 6192] (225 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.144 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 212,378 Number of Sequences: 1700 Number of extensions: 9111 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 225 length of database: 492,079 effective HSP length: 74 effective length of query: 151 effective length of database: 366,279 effective search space: 55308129 effective search space used: 55308129 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718351|ref|YP_003873883.1| hypothetical protein STHERM_c06510 [Spirochaeta thermophila DSM 6192] (101 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.144 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 128,035 Number of Sequences: 1700 Number of extensions: 5601 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 101 length of database: 492,079 effective HSP length: 64 effective length of query: 37 effective length of database: 383,279 effective search space: 14181323 effective search space used: 14181323 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718352|ref|YP_003873884.1| pyrimidine-nucleoside phosphorylase [Spirochaeta thermophila DSM 6192] (461 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 458,409 Number of Sequences: 1700 Number of extensions: 21206 Number of successful extensions: 88 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88 Number of HSP's gapped (non-prelim): 0 length of query: 461 length of database: 492,079 effective HSP length: 80 effective length of query: 381 effective length of database: 356,079 effective search space: 135666099 effective search space used: 135666099 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718353|ref|YP_003873885.1| single-stranded-DNA-specific exonuclease [Spirochaeta thermophila DSM 6192] (709 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 769,198 Number of Sequences: 1700 Number of extensions: 37452 Number of successful extensions: 166 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 166 Number of HSP's gapped (non-prelim): 0 length of query: 709 length of database: 492,079 effective HSP length: 83 effective length of query: 626 effective length of database: 350,979 effective search space: 219712854 effective search space used: 219712854 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718354|ref|YP_003873886.1| M23/M37 peptidase domain-containing protein [Spirochaeta thermophila DSM 6192] (304 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 334,478 Number of Sequences: 1700 Number of extensions: 15127 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 304 length of database: 492,079 effective HSP length: 76 effective length of query: 228 effective length of database: 362,879 effective search space: 82736412 effective search space used: 82736412 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718355|ref|YP_003873887.1| 30S ribosomal protein S21 [Spirochaeta thermophila DSM 6192] (74 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,018 Number of Sequences: 1700 Number of extensions: 1756 Number of successful extensions: 7 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 74 length of database: 492,079 effective HSP length: 45 effective length of query: 29 effective length of database: 415,579 effective search space: 12051791 effective search space used: 12051791 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718356|ref|YP_003873888.1| inositol-1-monophosphatase [Spirochaeta thermophila DSM 6192] (260 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431596|ref|NP_148173.2| fructose-1,6-bisphosphatase [Aerop... 53 9e-09 >gi|118431596|ref|NP_148173.2| fructose-1,6-bisphosphatase [Aeropyrum pernix K1] Length = 267 Score = 52.8 bits (125), Expect = 9e-09 Identities = 54/211 (25%), Positives = 86/211 (40%), Gaps = 14/211 (6%) Query: 34 VRDRVTTADIEAEKAIVAFIREAFPTHNILAEEHS--YEPTSSPYTWIIDPLDGTNNFSR 91 V T AD AE I+ +R +++EE TS ++DPLDG+ N+ Sbjct: 35 VSGETTVADKRAEDYILDLLRRELGQVQVISEEAGGVASKTSDAPIALVDPLDGSTNYLS 94 Query: 92 GFPFFACSVALKE--GDEVIVGAVCDSVRGEIFTAEKGGGAFLNEEPIHVSEVSDLATSL 149 + + SVA + E++ G+V G + +G G + + + S+ Sbjct: 95 CITWCSVSVAFADPRSGEILAGSVAPVYAGMPVSFARGKGCYHGGLKVEDPSIRGSIISV 154 Query: 150 LVT--GFYQTQSEEVVRNLEVLKXXXXXXXXXXXXTGAAALDLCYVACGRVDGFWE--PI 205 V G ++ + + R V + G+AAL+L Y A G + F + Sbjct: 155 YVDEPGAIESVAGAIGRLKGVRRDFKVRSL------GSAALELAYTAIGYIAVFADLRAR 208 Query: 206 LNPWDFAAGALIVREAGGMCTTYEAEPLPFG 236 L D AA VRE GG+ T +PL G Sbjct: 209 LRNIDVAAAVGAVRECGGVVTDAHGQPLRIG 239 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 255,755 Number of Sequences: 1700 Number of extensions: 10805 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 1 length of query: 260 length of database: 492,079 effective HSP length: 75 effective length of query: 185 effective length of database: 364,579 effective search space: 67447115 effective search space used: 67447115 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718357|ref|YP_003873889.1| hypothetical protein STHERM_c06570 [Spirochaeta thermophila DSM 6192] (210 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 252,394 Number of Sequences: 1700 Number of extensions: 12041 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 210 length of database: 492,079 effective HSP length: 73 effective length of query: 137 effective length of database: 367,979 effective search space: 50413123 effective search space used: 50413123 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718358|ref|YP_003873890.1| transcriptional regulator [Spirochaeta thermophila DSM 6192] (310 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 298,325 Number of Sequences: 1700 Number of extensions: 13329 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 0 length of query: 310 length of database: 492,079 effective HSP length: 77 effective length of query: 233 effective length of database: 361,179 effective search space: 84154707 effective search space used: 84154707 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718359|ref|YP_003873891.1| Ser/Thr protein phosphatase family protein [Spirochaeta thermophila DSM 6192] (218 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431812|ref|NP_148512.2| hypothetical protein APE_2283.1 [A... 46 9e-07 >gi|118431812|ref|NP_148512.2| hypothetical protein APE_2283.1 [Aeropyrum pernix K1] Length = 206 Score = 45.8 bits (107), Expect = 9e-07 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 18/104 (17%) Query: 92 RVLKVKGLLIAGLGGSYRYNNGLNQYSDFQMWLKVLRLVPRLLYNRIRYGRFLDILVTHA 151 RV +V GL+ G+GG ++ + +M L+ L G +D+L+TH Sbjct: 85 RVDRVGGLVFGGVGG-------MDPRTSMEMLLRSLE----------SSGLTVDVLLTHH 127 Query: 152 PPYGINDRPDPCHR-GFKSFLWFLKTFKPRYHLHGHIHLYNGLE 194 PP+G+ D R G + + KPR HL GHIH G+E Sbjct: 128 PPHGVLDTTFAGVRAGLHDLRSLVDSLKPRAHLFGHIHESPGIE 171 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.147 0.473 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 241,858 Number of Sequences: 1700 Number of extensions: 10968 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 1 length of query: 218 length of database: 492,079 effective HSP length: 73 effective length of query: 145 effective length of database: 367,979 effective search space: 53356955 effective search space used: 53356955 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718360|ref|YP_003873892.1| hypothetical protein STHERM_c06610 [Spirochaeta thermophila DSM 6192] (509 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 437,179 Number of Sequences: 1700 Number of extensions: 17667 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 0 length of query: 509 length of database: 492,079 effective HSP length: 81 effective length of query: 428 effective length of database: 354,379 effective search space: 151674212 effective search space used: 151674212 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718361|ref|YP_003873893.1| hypothetical protein STHERM_c06600 [Spirochaeta thermophila DSM 6192] (255 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.134 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 182,436 Number of Sequences: 1700 Number of extensions: 5879 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 255 length of database: 492,079 effective HSP length: 75 effective length of query: 180 effective length of database: 364,579 effective search space: 65624220 effective search space used: 65624220 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718362|ref|YP_003873894.1| hypothetical protein STHERM_c06620 [Spirochaeta thermophila DSM 6192] (653 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.132 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 522,466 Number of Sequences: 1700 Number of extensions: 21601 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 0 length of query: 653 length of database: 492,079 effective HSP length: 83 effective length of query: 570 effective length of database: 350,979 effective search space: 200058030 effective search space used: 200058030 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718363|ref|YP_003873895.1| DNA mismatch repair protein MutL [Spirochaeta thermophila DSM 6192] (573 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 637,109 Number of Sequences: 1700 Number of extensions: 31525 Number of successful extensions: 74 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74 Number of HSP's gapped (non-prelim): 0 length of query: 573 length of database: 492,079 effective HSP length: 82 effective length of query: 491 effective length of database: 352,679 effective search space: 173165389 effective search space used: 173165389 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718364|ref|YP_003873896.1| hypothetical protein STHERM_c06640 [Spirochaeta thermophila DSM 6192] (731 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 765,686 Number of Sequences: 1700 Number of extensions: 36012 Number of successful extensions: 81 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81 Number of HSP's gapped (non-prelim): 0 length of query: 731 length of database: 492,079 effective HSP length: 84 effective length of query: 647 effective length of database: 349,279 effective search space: 225983513 effective search space used: 225983513 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718365|ref|YP_003873897.1| hypothetical protein STHERM_c06650 [Spirochaeta thermophila DSM 6192] (447 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.141 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 459,382 Number of Sequences: 1700 Number of extensions: 21241 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 447 length of database: 492,079 effective HSP length: 80 effective length of query: 367 effective length of database: 356,079 effective search space: 130680993 effective search space used: 130680993 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718366|ref|YP_003873898.1| hypothetical protein STHERM_c06670 [Spirochaeta thermophila DSM 6192] (1608 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.134 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,529,411 Number of Sequences: 1700 Number of extensions: 68734 Number of successful extensions: 147 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 147 Number of HSP's gapped (non-prelim): 0 length of query: 1608 length of database: 492,079 effective HSP length: 90 effective length of query: 1518 effective length of database: 339,079 effective search space: 514721922 effective search space used: 514721922 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 98 (42.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718367|ref|YP_003873899.1| hypothetical protein STHERM_c06660 [Spirochaeta thermophila DSM 6192] (338 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 322,215 Number of Sequences: 1700 Number of extensions: 13409 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 0 length of query: 338 length of database: 492,079 effective HSP length: 77 effective length of query: 261 effective length of database: 361,179 effective search space: 94267719 effective search space used: 94267719 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718368|ref|YP_003873900.1| hypothetical protein STHERM_c06680 [Spirochaeta thermophila DSM 6192] (368 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 332,352 Number of Sequences: 1700 Number of extensions: 13198 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 0 length of query: 368 length of database: 492,079 effective HSP length: 78 effective length of query: 290 effective length of database: 359,479 effective search space: 104248910 effective search space used: 104248910 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718369|ref|YP_003873901.1| hypothetical protein STHERM_c06690 [Spirochaeta thermophila DSM 6192] (95 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,135 Number of Sequences: 1700 Number of extensions: 3226 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 95 length of database: 492,079 effective HSP length: 63 effective length of query: 32 effective length of database: 384,979 effective search space: 12319328 effective search space used: 12319328 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718370|ref|YP_003873902.1| hypothetical protein STHERM_c06700 [Spirochaeta thermophila DSM 6192] (236 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 254,488 Number of Sequences: 1700 Number of extensions: 10759 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 236 length of database: 492,079 effective HSP length: 74 effective length of query: 162 effective length of database: 366,279 effective search space: 59337198 effective search space used: 59337198 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718371|ref|YP_003873903.1| PP-loop domain-containing protein [Spirochaeta thermophila DSM 6192] (276 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431097|ref|NP_147309.2| hypothetical protein APE_0537.1 [A... 75 2e-15 gi|14601833|ref|NP_148374.1| hypothetical protein APE_2086 [Aero... 67 6e-13 >gi|118431097|ref|NP_147309.2| hypothetical protein APE_0537.1 [Aeropyrum pernix K1] Length = 338 Score = 74.7 bits (182), Expect = 2e-15 Identities = 68/226 (30%), Positives = 101/226 (44%), Gaps = 24/226 (10%) Query: 30 RGINRYGMLREGDRVLLGISGGKDSLVMALVLSL---RRRWLPIHYHLEAVHLNWEEYPI 86 R + R+GM+ G+ VLLG+SGGKDS V+ LS R + + N E Sbjct: 40 REVERWGMIGPGETVLLGLSGGKDSYVLLDALSEIVGPSRLVAVSIVEGIPGYNRE---- 95 Query: 87 SDEESARLAAYFEAIDVPFTQITTTMFPGHYD----------GQFNCYLCARNRKRHLFT 136 D E R A +DV T I + Y+ G C C +R+R L Sbjct: 96 GDIEKIRRVAAARGVDVIVTSIREYVGASLYEIYSRARGRGAGHAACTYCGISRRRILAL 155 Query: 137 YMKEYDIPILALGHHLDDIVETTLINMAMRGRLFTMMPVQPFF--GG--LFTLIRPLCEV 192 Y + Y +A H+LDD +T ++N +RG M+ P + GG L I+PL +V Sbjct: 156 YARLYGAHKVATAHNLDDEAQTAIVNF-LRGDWVGMLKTHPLYRSGGEDLVPRIKPLRKV 214 Query: 193 PESQVRTAVEKLGLPVVKPDCPYKDTN--LRLRVKPLVEQLATLDP 236 E + + V P+ + +CP+ + N LR RV+ + L P Sbjct: 215 YEWETASYVVLHRYPIQEAECPFINMNPTLRARVRTALRVLEERSP 260 >gi|14601833|ref|NP_148374.1| hypothetical protein APE_2086 [Aeropyrum pernix K1] Length = 331 Score = 66.6 bits (161), Expect = 6e-13 Identities = 66/246 (26%), Positives = 104/246 (42%), Gaps = 15/246 (6%) Query: 20 WLTRLARKAGRGINRYGMLREGDRVLLGISGGKDSLVMALVLSLRRRWLPIHYHLEAVHL 79 +L + K R I R+ ++ +GDRVL +SGGKDS + VLS R + H +HL Sbjct: 27 YLEFVESKVERAIMRHRLVGKGDRVLAAVSGGKDSSTLLAVLSRLSRRIGFHVVALYIHL 86 Query: 80 NWEEY-PISDEESARLAAYFEAIDVP-----FTQITTTMFP--GHYDGQFNCYLCARNRK 131 EY S E S RLA+ +DVP ++ P + C +C ++ Sbjct: 87 GIYEYSEKSREASIRLAS---QLDVPLIVFDLNEVLGAGIPELAKASKRPPCSVCGMVKR 143 Query: 132 RHLFTYMKEYDIPILALGHHLDDIVETTL---INMAMRGRLFTMMPVQPFFGGLFTLIRP 188 + E + +ALGH+ DDI L +N + + + G +RP Sbjct: 144 YVINAAAVELGVDAVALGHNADDIAVYNLKSFLNQDLEAISKLGVKTESIPGVAVGRVRP 203 Query: 189 LCEVPESQVRTAVEKLGLPVVKPDCPYKD-TNLRLRVKPLVEQLATLDPLAREKIYRSLL 247 L V E + GLP + +CP+ + + + +K V QL P + ++ L Sbjct: 204 LYYVYEKESFLYSLLAGLPFLHEECPFVERRQMEVELKETVNQLEDKRPGLKLQMVSKLA 263 Query: 248 NIQPDY 253 DY Sbjct: 264 KRVEDY 269 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 290,941 Number of Sequences: 1700 Number of extensions: 12816 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 2 length of query: 276 length of database: 492,079 effective HSP length: 76 effective length of query: 200 effective length of database: 362,879 effective search space: 72575800 effective search space used: 72575800 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718372|ref|YP_003873904.1| hypothetical protein STHERM_c06730 [Spirochaeta thermophila DSM 6192] (506 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601310|ref|NP_147845.1| hypothetical protein APE_1281 [Aero... 46 2e-06 >gi|14601310|ref|NP_147845.1| hypothetical protein APE_1281 [Aeropyrum pernix K1] Length = 643 Score = 45.8 bits (107), Expect = 2e-06 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 12/97 (12%) Query: 260 LLSGVLDPDKLDYLTRDAFFCGVPYGVQDID--HILTTIRPTASG----------LAITP 307 LLS +D D+ DY+ RD+ G G+ DI+ + + T+ P A L I Sbjct: 257 LLSSGIDVDRADYIIRDSIHTGSLSGIYDINRYYAVLTLVPEARHTHSTLKASLRLGILE 316 Query: 308 SGIPSIEHILFSKYLMYRTVYWHRTVRAATAMMKKAI 344 G+ IE++L ++ MY VY H +AM+ + I Sbjct: 317 KGVTVIENMLLARIYMYSDVYLHDVSMIYSAMLSRVI 353 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 457,930 Number of Sequences: 1700 Number of extensions: 17056 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 3 length of query: 506 length of database: 492,079 effective HSP length: 81 effective length of query: 425 effective length of database: 354,379 effective search space: 150611075 effective search space used: 150611075 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718373|ref|YP_003873905.1| hypothetical protein STHERM_c06720 [Spirochaeta thermophila DSM 6192] (240 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.140 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 226,075 Number of Sequences: 1700 Number of extensions: 8779 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 240 length of database: 492,079 effective HSP length: 74 effective length of query: 166 effective length of database: 366,279 effective search space: 60802314 effective search space used: 60802314 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718374|ref|YP_003873906.1| hypothetical protein STHERM_c06740 [Spirochaeta thermophila DSM 6192] (421 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 379,868 Number of Sequences: 1700 Number of extensions: 16339 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 0 length of query: 421 length of database: 492,079 effective HSP length: 79 effective length of query: 342 effective length of database: 357,779 effective search space: 122360418 effective search space used: 122360418 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718375|ref|YP_003873907.1| anti-anti-sigma factor [Spirochaeta thermophila DSM 6192] (130 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 110,330 Number of Sequences: 1700 Number of extensions: 3978 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 130 length of database: 492,079 effective HSP length: 67 effective length of query: 63 effective length of database: 378,179 effective search space: 23825277 effective search space used: 23825277 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718376|ref|YP_003873908.1| hypothetical protein STHERM_c06760 [Spirochaeta thermophila DSM 6192] (116 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,521 Number of Sequences: 1700 Number of extensions: 3114 Number of successful extensions: 7 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 116 length of database: 492,079 effective HSP length: 66 effective length of query: 50 effective length of database: 379,879 effective search space: 18993950 effective search space used: 18993950 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718377|ref|YP_003873909.1| hypothetical protein STHERM_c06770 [Spirochaeta thermophila DSM 6192] (190 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 195,840 Number of Sequences: 1700 Number of extensions: 8654 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 190 length of database: 492,079 effective HSP length: 72 effective length of query: 118 effective length of database: 369,679 effective search space: 43622122 effective search space used: 43622122 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718378|ref|YP_003873910.1| hypothetical protein STHERM_c06780 [Spirochaeta thermophila DSM 6192] (926 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,016,243 Number of Sequences: 1700 Number of extensions: 48716 Number of successful extensions: 156 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 156 Number of HSP's gapped (non-prelim): 0 length of query: 926 length of database: 492,079 effective HSP length: 85 effective length of query: 841 effective length of database: 347,579 effective search space: 292313939 effective search space used: 292313939 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718379|ref|YP_003873911.1| hypothetical protein STHERM_c06800 [Spirochaeta thermophila DSM 6192] (240 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431622|ref|NP_148221.2| PflA-like protein [Aeropyrum perni... 49 1e-07 >gi|118431622|ref|NP_148221.2| PflA-like protein [Aeropyrum pernix K1] Length = 366 Score = 48.9 bits (115), Expect = 1e-07 Identities = 62/243 (25%), Positives = 101/243 (41%), Gaps = 32/243 (13%) Query: 8 GLVKTSLID----------FPGMLSAVLFTGGCNLRCPYCHNPELVEGDPEDFL------ 51 GL+ S ID +PG + T GCN C +C N E+ + E L Sbjct: 64 GLLSASNIDPIEKKPLLHFYPGSTVLSISTVGCNFFCQFCQNFEISQSRLEKGLYGVYRT 123 Query: 52 PWEEIRAFLTRRRGILKGVVFTGGEP-LLKGFLPSLIEEVRGMGYACKLDTNGTL-PQRL 109 P E +R L G+ +T EP + + + +E + G + TNG + P+ + Sbjct: 124 PEEVVRLALVYG---ADGITYTYNEPTIFFETVYDVAKEAKKHGLFNTMVTNGYMTPEAV 180 Query: 110 EEVLPLLDYVAVDFKTA--PDLYHRVGGDTTGGEKVKESLGLVAQQGIPHEVRVTACPPI 167 +E+ L+D VDFK P+ Y ++ E + E++ + +G E+ P + Sbjct: 181 DELGSLIDAATVDFKGGGDPEFYRKI-MFVPDPEPIYEAILAMKDKGWWIEITNLVVPIL 239 Query: 168 VDR-EVFSRMLEDLPEGIDHVV---VAGFRPSVTLDPAYRGVAPYPPKELEEWKHLCEER 223 D+ E RM + E + V + F P L R V P K LE+ + E Sbjct: 240 GDKPEYVRRMARWIVENLGPEVPFHLLRFHPDYKL----RHVPHTPVKTLEKLARIAMEE 295 Query: 224 GIR 226 G++ Sbjct: 296 GLK 298 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.144 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 305,872 Number of Sequences: 1700 Number of extensions: 16106 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 1 length of query: 240 length of database: 492,079 effective HSP length: 74 effective length of query: 166 effective length of database: 366,279 effective search space: 60802314 effective search space used: 60802314 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718380|ref|YP_003873912.1| hypothetical protein STHERM_c06810 [Spirochaeta thermophila DSM 6192] (159 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431901|ref|NP_148649.2| thioredoxin [Aeropyrum pernix K1] 47 3e-07 >gi|118431901|ref|NP_148649.2| thioredoxin [Aeropyrum pernix K1] Length = 143 Score = 46.6 bits (109), Expect = 3e-07 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 8/78 (10%) Query: 79 ILYFYRKACPYCPAMRQALEEAGISYRA----VDVDTAEGQSLAERYGVLGTPTVLLLDG 134 I +FY CPYC ++ EEA YR V+ A +++ G++GTPT++ Sbjct: 54 IAFFYTPTCPYCRMLKPVFEEAARFYRGKALFAAVNLARFPFMSDALGIMGTPTIIAF-V 112 Query: 135 KGKEVGRTTS---PEELK 149 +G+E GR PE L+ Sbjct: 113 RGREAGRLVGLMPPERLE 130 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 166,144 Number of Sequences: 1700 Number of extensions: 7407 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 1 length of query: 159 length of database: 492,079 effective HSP length: 70 effective length of query: 89 effective length of database: 373,079 effective search space: 33204031 effective search space used: 33204031 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718381|ref|YP_003873913.1| anaerobic ribonucleoside triphosphate reductase [Spirochaeta thermophila DSM 6192] (689 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 677,133 Number of Sequences: 1700 Number of extensions: 29770 Number of successful extensions: 98 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98 Number of HSP's gapped (non-prelim): 0 length of query: 689 length of database: 492,079 effective HSP length: 83 effective length of query: 606 effective length of database: 350,979 effective search space: 212693274 effective search space used: 212693274 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718382|ref|YP_003873914.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (157 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 155,556 Number of Sequences: 1700 Number of extensions: 6778 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 157 length of database: 492,079 effective HSP length: 70 effective length of query: 87 effective length of database: 373,079 effective search space: 32457873 effective search space used: 32457873 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718383|ref|YP_003873915.1| hypothetical protein STHERM_c06840 [Spirochaeta thermophila DSM 6192] (117 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.139 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 131,320 Number of Sequences: 1700 Number of extensions: 5231 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 117 length of database: 492,079 effective HSP length: 66 effective length of query: 51 effective length of database: 379,879 effective search space: 19373829 effective search space used: 19373829 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718384|ref|YP_003873916.1| phospho-2-dehydro-3-deoxyheptonate aldolase [Spirochaeta thermophila DSM 6192] (353 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 346,326 Number of Sequences: 1700 Number of extensions: 15003 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 0 length of query: 353 length of database: 492,079 effective HSP length: 78 effective length of query: 275 effective length of database: 359,479 effective search space: 98856725 effective search space used: 98856725 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718385|ref|YP_003873917.1| hypothetical protein STHERM_c06860 [Spirochaeta thermophila DSM 6192] (34 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,076 Number of Sequences: 1700 Number of extensions: 1088 Number of successful extensions: 2 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 34 length of database: 492,079 effective HSP length: 8 effective length of query: 26 effective length of database: 478,479 effective search space: 12440454 effective search space used: 12440454 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718386|ref|YP_003873918.1| hypothetical protein STHERM_c06870 [Spirochaeta thermophila DSM 6192] (163 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 122,119 Number of Sequences: 1700 Number of extensions: 4314 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 163 length of database: 492,079 effective HSP length: 70 effective length of query: 93 effective length of database: 373,079 effective search space: 34696347 effective search space used: 34696347 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718387|ref|YP_003873919.1| hypothetical protein STHERM_c06880 [Spirochaeta thermophila DSM 6192] (99 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.142 0.515 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 127,062 Number of Sequences: 1700 Number of extensions: 5625 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 99 length of database: 492,079 effective HSP length: 64 effective length of query: 35 effective length of database: 383,279 effective search space: 13414765 effective search space used: 13414765 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718388|ref|YP_003873920.1| hypothetical protein STHERM_c06890 [Spirochaeta thermophila DSM 6192] (72 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.145 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,600 Number of Sequences: 1700 Number of extensions: 2778 Number of successful extensions: 7 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 72 length of database: 492,079 effective HSP length: 43 effective length of query: 29 effective length of database: 418,979 effective search space: 12150391 effective search space used: 12150391 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718389|ref|YP_003873921.1| hypothetical protein STHERM_c06900 [Spirochaeta thermophila DSM 6192] (255 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.132 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 300,194 Number of Sequences: 1700 Number of extensions: 14155 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 255 length of database: 492,079 effective HSP length: 75 effective length of query: 180 effective length of database: 364,579 effective search space: 65624220 effective search space used: 65624220 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718390|ref|YP_003873922.1| hypothetical protein STHERM_c06910 [Spirochaeta thermophila DSM 6192] (158 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 147,560 Number of Sequences: 1700 Number of extensions: 6250 Number of successful extensions: 27 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 0 length of query: 158 length of database: 492,079 effective HSP length: 70 effective length of query: 88 effective length of database: 373,079 effective search space: 32830952 effective search space used: 32830952 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718391|ref|YP_003873923.1| hypothetical protein STHERM_c06920 [Spirochaeta thermophila DSM 6192] (75 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.133 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,653 Number of Sequences: 1700 Number of extensions: 3967 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 75 length of database: 492,079 effective HSP length: 46 effective length of query: 29 effective length of database: 413,879 effective search space: 12002491 effective search space used: 12002491 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718392|ref|YP_003873924.1| hypothetical protein STHERM_c06930 [Spirochaeta thermophila DSM 6192] (127 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 111,568 Number of Sequences: 1700 Number of extensions: 3964 Number of successful extensions: 4 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 127 length of database: 492,079 effective HSP length: 67 effective length of query: 60 effective length of database: 378,179 effective search space: 22690740 effective search space used: 22690740 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718393|ref|YP_003873925.1| hypothetical protein STHERM_c06940 [Spirochaeta thermophila DSM 6192] (291 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 299,780 Number of Sequences: 1700 Number of extensions: 13308 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 0 length of query: 291 length of database: 492,079 effective HSP length: 76 effective length of query: 215 effective length of database: 362,879 effective search space: 78018985 effective search space used: 78018985 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718394|ref|YP_003873926.1| hypothetical protein STHERM_c06950 [Spirochaeta thermophila DSM 6192] (174 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.132 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 145,251 Number of Sequences: 1700 Number of extensions: 5729 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 174 length of database: 492,079 effective HSP length: 71 effective length of query: 103 effective length of database: 371,379 effective search space: 38252037 effective search space used: 38252037 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718395|ref|YP_003873927.1| hypothetical protein STHERM_c06960 [Spirochaeta thermophila DSM 6192] (328 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 370,294 Number of Sequences: 1700 Number of extensions: 17808 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 328 length of database: 492,079 effective HSP length: 77 effective length of query: 251 effective length of database: 361,179 effective search space: 90655929 effective search space used: 90655929 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718396|ref|YP_003873928.1| serine/threonine-protein kinase Sps1 [Spirochaeta thermophila DSM 6192] (618 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 642,870 Number of Sequences: 1700 Number of extensions: 30299 Number of successful extensions: 98 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98 Number of HSP's gapped (non-prelim): 0 length of query: 618 length of database: 492,079 effective HSP length: 82 effective length of query: 536 effective length of database: 352,679 effective search space: 189035944 effective search space used: 189035944 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718397|ref|YP_003873929.1| hypothetical protein STHERM_c06980 [Spirochaeta thermophila DSM 6192] (296 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 250,621 Number of Sequences: 1700 Number of extensions: 10720 Number of successful extensions: 66 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66 Number of HSP's gapped (non-prelim): 0 length of query: 296 length of database: 492,079 effective HSP length: 76 effective length of query: 220 effective length of database: 362,879 effective search space: 79833380 effective search space used: 79833380 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718398|ref|YP_003873930.1| hypothetical protein STHERM_c06990 [Spirochaeta thermophila DSM 6192] (458 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 507,155 Number of Sequences: 1700 Number of extensions: 24562 Number of successful extensions: 91 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91 Number of HSP's gapped (non-prelim): 0 length of query: 458 length of database: 492,079 effective HSP length: 80 effective length of query: 378 effective length of database: 356,079 effective search space: 134597862 effective search space used: 134597862 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718399|ref|YP_003873931.1| hypothetical protein STHERM_c07000 [Spirochaeta thermophila DSM 6192] (263 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 201,393 Number of Sequences: 1700 Number of extensions: 5877 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 263 length of database: 492,079 effective HSP length: 75 effective length of query: 188 effective length of database: 364,579 effective search space: 68540852 effective search space used: 68540852 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718400|ref|YP_003873932.1| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [Spirochaeta thermophila DSM 6192] (368 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 369,233 Number of Sequences: 1700 Number of extensions: 16698 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 0 length of query: 368 length of database: 492,079 effective HSP length: 78 effective length of query: 290 effective length of database: 359,479 effective search space: 104248910 effective search space used: 104248910 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718401|ref|YP_003873933.1| hypothetical protein STHERM_c07020 [Spirochaeta thermophila DSM 6192] (172 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 210,416 Number of Sequences: 1700 Number of extensions: 10541 Number of successful extensions: 48 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48 Number of HSP's gapped (non-prelim): 0 length of query: 172 length of database: 492,079 effective HSP length: 71 effective length of query: 101 effective length of database: 371,379 effective search space: 37509279 effective search space used: 37509279 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718402|ref|YP_003873934.1| hypothetical protein STHERM_c07030 [Spirochaeta thermophila DSM 6192] (202 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431842|ref|NP_148559.2| hydrolase [Aeropyrum pernix K1] 57 3e-10 >gi|118431842|ref|NP_148559.2| hydrolase [Aeropyrum pernix K1] Length = 207 Score = 57.0 bits (136), Expect = 3e-10 Identities = 58/191 (30%), Positives = 79/191 (41%), Gaps = 42/191 (21%) Query: 3 ALIVVDVQNDFV-PGGALPVPEGDAVIPVINRLMGRFDV----VVATQDWHPATHKSFAS 57 A++VVD+QNDFV P G L VP A I I RL+ + V TQD H Sbjct: 27 AVVVVDMQNDFVKPQGKLFVPTAPATIEPIRRLLEKARSAGVRVFYTQDTH--------- 77 Query: 58 NHPGRRPYEVITLEGLEQVLWPDHCVQGSPGAEFAPGLDLRPVEA---IVRKGTDPGIDS 114 + G +E+ W +H G+ G +L+PVE +V K Sbjct: 78 -YEGDPEFEI----------WGEHVRYGTWGWRIVE--ELKPVEGRDIVVMK------TR 118 Query: 115 YSGFYDNGRKRTTGLAGYLRERGVREVYVTGLAGEYCVFYTAMDAAAEGFATFVVEDATR 174 Y GFY T L LR GV+ + + G CV +TA AA + V D Sbjct: 119 YDGFYG------TMLDDLLRVYGVKNLVIVGTVANICVLHTAGSAALRWYKVVVPLDGIS 172 Query: 175 PLDQEDFEKAV 185 L+ D+ A+ Sbjct: 173 ALNDFDYHAAL 183 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 244,202 Number of Sequences: 1700 Number of extensions: 12151 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 1 length of query: 202 length of database: 492,079 effective HSP length: 73 effective length of query: 129 effective length of database: 367,979 effective search space: 47469291 effective search space used: 47469291 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718403|ref|YP_003873935.1| hypothetical protein STHERM_c07040 [Spirochaeta thermophila DSM 6192] (472 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431391|ref|NP_147837.2| nicotinate phosphoribosyltransfera... 113 1e-26 >gi|118431391|ref|NP_147837.2| nicotinate phosphoribosyltransferase [Aeropyrum pernix K1] Length = 390 Score = 113 bits (282), Expect = 1e-26 Identities = 109/349 (31%), Positives = 154/349 (44%), Gaps = 48/349 (13%) Query: 93 IYSFREGEIAFPHEPILRVEGSXXXXXXXXXXXXAVLNFQSLIATKAARVRLAAGE-RVV 151 +YS EG + +P++ VEG +L F + IATKAARVRLAAG + V Sbjct: 78 VYSLPEGTVFERKDPLMVVEGRFQDIILFETALLGLLRFSTSIATKAARVRLAAGRGKTV 137 Query: 152 SDFGLRRAHGWGGIMASRAAVIGGCDSTSNMEAARRYGIPAVGTMAHSFVQSYDNELEAF 211 FGLR H A RAA++GG D S + + G+ GTM H+ + + +++EA+ Sbjct: 138 LFFGLRALHPAVQPAADRAALVGGLDGVSGVLSREYLGVEPRGTMPHALIIVFGSQVEAW 197 Query: 212 REYAR--HNPDSCILLVDTYDTLGSGIPHAITVAKELEAAGHRLRGIRIDS-----GDLA 264 R +A I LVDT+ A+ A+EL G L G+R+D+ G + Sbjct: 198 RAFAETFKEETPVIALVDTF---WDEREEALMAAREL---GEVLAGVRLDTPSSRRGRMR 251 Query: 265 YLSRKARRMLDEAGLTHVKIAVSNQLDERVVKSLLEQGAPIDIFGVGTRMVTG-QPDAAL 323 + + R LD G HVKI VS LDE V L + D FGVGT + D ++ Sbjct: 252 DIVEEVRWALDIHGYKHVKIFVSGGLDEERVAELRDVA---DGFGVGTTIAAAPNIDISM 308 Query: 324 DGVYKLSMCAGRPRMKISNTIVKTTLPGRKRAVRYANGDGGWVADGILLADEEGTHTIHH 383 D V RPR K + LPG R++ G+ V G + EG + Sbjct: 309 DVVEVHEDGEWRPRTK------RGKLPG-ARSIVLCRGEKRIVRLG---EEPEGCEPLTR 358 Query: 384 PYEPGKKLCVRDFETEELHHLVMEEGRRVGPAPTVQEIARYARERLAAL 432 Y +EEGR P++ EI Y ++L L Sbjct: 359 KY--------------------LEEGRLAQSLPSLDEIRSYVLKQLENL 387 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 458,026 Number of Sequences: 1700 Number of extensions: 20374 Number of successful extensions: 77 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74 Number of HSP's gapped (non-prelim): 1 length of query: 472 length of database: 492,079 effective HSP length: 80 effective length of query: 392 effective length of database: 356,079 effective search space: 139582968 effective search space used: 139582968 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718404|ref|YP_003873936.1| transporter [Spirochaeta thermophila DSM 6192] (280 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 129 8e-32 gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum... 74 3e-15 gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyru... 51 3e-08 gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 49 1e-07 gi|118431570|ref|NP_148130.2| ABC transporter permease [Aeropyru... 45 2e-06 gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease... 41 3e-05 gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyru... 41 4e-05 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 129 bits (324), Expect = 8e-32 Identities = 66/250 (26%), Positives = 125/250 (50%), Gaps = 5/250 (2%) Query: 35 LLATSLKSFTEVNIQNMWSL-PRTVSLEGFAKALE----KLGPNFVNSVLLTVPATILSA 89 L S++ + EV ++ W++ T +++ + KA + ++NS+++ +PAT++ Sbjct: 36 LFMVSVRPYGEVIVKGWWNIVDATFTMDNYIKAWSYDPYSVSGGYINSLIVALPATVIPV 95 Query: 90 FLGSINGYIFAKWRFPGANLLFAFVLFGMFIPYQSILIPLVQFLSRIRLYGTLPGLILTH 149 S Y F+++ FP + LF + M +P Q +++PL L + L T PG+IL H Sbjct: 96 AAASFAAYGFSRFSFPLKSYLFLVTILLMALPQQIVVVPLFLLLKNLGLINTFPGIILVH 155 Query: 150 VVYGIPITTLIFRNYYTEIPGSLIEAAQIDGLGLFRIYRHILLPLSAPAFVVVVIWQMTS 209 +G+ +N++ +P + EAA++DG FRI+ I+LP+S P + + Q T Sbjct: 156 SAWGMAWIIFFMKNFFDILPREVEEAARVDGASDFRIFYKIVLPMSLPGILSASVLQFTW 215 Query: 210 IWNEFLFAVTITQNPRVQPITVALQNLAGSQIVEWNVQMXXXXXXXXXXXXXXXXXXKYF 269 +W+ F F + +P IT + N+ G+ +V+W + +Y+ Sbjct: 216 VWSSFFFELIFLIDPSKWVITQRIANMKGTYLVDWGLIAAGSVFAMAVPLAVYMLLQRYY 275 Query: 270 IRGLLAGSVK 279 IRG + + K Sbjct: 276 IRGFVGWAAK 285 >gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum pernix K1] Length = 270 Score = 74.3 bits (181), Expect = 3e-15 Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 14/187 (7%) Query: 42 SFTEVNIQNMWSLPRTVSLEGFAKALEKLGPNFVNSVLLTVPATILSAFLGSINGYIFAK 101 SFT +++ +W L G F+ SV + +S LG GY A+ Sbjct: 51 SFTLDHVKTLWILGA--------------GEAFLRSVAVGAMTVGISFLLGLPGGYALAR 96 Query: 102 WRFPGANLLFAFVLFGMFIPYQSILIPLVQFLSRIRLYGTLPGLILTHVVYGIPITTLIF 161 + FPG + + ++ P I + L++ + L TL GL L H +P +I Sbjct: 97 YVFPGRDAVKLAIIATRMFPIIVISVSLLKTFFNLGLNDTLIGLALAHTAMALPFVVIIT 156 Query: 162 RNYYTEIPGSLIEAAQIDGLGLFRIYRHILLPLSAPAFVVVVIWQMTSIWNEFLFAVTIT 221 + + IP L EA I GL ++ I LPL+AP ++ WNE A +T Sbjct: 157 GSIFGGIPRDLEEAGMIFGLSSIMVFLRITLPLAAPGLTAAGMFTFLLSWNEVFMASVLT 216 Query: 222 QNPRVQP 228 R P Sbjct: 217 LVNRTLP 223 >gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyrum pernix K1] Length = 302 Score = 51.2 bits (121), Expect = 3e-08 Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 18/159 (11%) Query: 73 NFVNSVLLTVPATI---LSAFLGSI-NGYIFAKWRFPGANLLFAFVLFGMFIPYQSILIP 128 N V L+T+ + L+A L S+ Y ++ F G + A ++ P +++I Sbjct: 83 NVVEMTLVTLTVAVGVALTATLVSLLAAYSISRMEFKGRGVFTAGLIMLHAFPGVALIIG 142 Query: 129 LVQFLSRIRLYGTLPG-----------LILTHVVYGIPITTLIFRNYYTEIPGSLIEAAQ 177 + R+ G + G +IL +P+ +F+ ++ +IP L +A Sbjct: 143 VYMIF---RIIGDVLGVLGEEFYAIAYIILARAALEVPMAIWLFKGFFDKIPWELEWSAL 199 Query: 178 IDGLGLFRIYRHILLPLSAPAFVVVVIWQMTSIWNEFLF 216 +DG R++ IL+PL P V+I+ + W EF++ Sbjct: 200 VDGASRVRVWWSILVPLVKPGIAAVLIFTFLAGWEEFIY 238 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 49.3 bits (116), Expect = 1e-07 Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 32/157 (20%) Query: 87 LSAFLGSINGYIFAKWRFPGANLLFAFVLFGMFIP--------------YQSILIPLV-- 130 L FLG Y+ K+ F G++++ V GM IP Y + +PLV Sbjct: 90 LVTFLGLFLAYLL-KYTF-GSSIVKTIVFIGMVIPMVVGGLIVRFMFDEYVGV-VPLVFK 146 Query: 131 ----QFLSRIRLYGTLPGLILTHVVYG-----IPITTLIFRNYYTEIPGSLIEAAQIDGL 181 FL++ + P L L ++ G + ++ IP S IEAA+IDG Sbjct: 147 ALGVDFLAKT--WTNYPQLSLLSLILGSVWLWTGFSLTVYSAALGSIPSSFIEAARIDGA 204 Query: 182 GLFRIYRHILLPLSAPAFVVVVIWQMTSIWNEFLFAV 218 G + I+ I+ PL PA ++VV+ MT +W+ +F + Sbjct: 205 GHWHIFWKIVFPLVRPATIIVVV--MTMLWDLKIFDI 239 >gi|118431570|ref|NP_148130.2| ABC transporter permease [Aeropyrum pernix K1] Length = 594 Score = 45.4 bits (106), Expect = 2e-06 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 29/186 (15%) Query: 75 VNSVLLTVPATILSAFLGSINGYIFAKWRFPGAN---------LLF-----AFVLFGMFI 120 VN+V++ T+ S +G+ + + + FPG + LL+ AFV++ +F Sbjct: 87 VNTVIVATLVTLFSTVIGTAAALLTSSYYFPGRDVVRIVMMLPLLYTPFVNAFVVYNLFG 146 Query: 121 PYQSILIPLVQFLSRIRLYGT-LPGLILTHVVYGIPITTLIFRNYYTEIPGSLIEAAQID 179 +L + L + +Y L G+ILT + PI + +I SL E A+ Sbjct: 147 KDNGVLATITGSLFGVSVYFQGLAGVILTQTLMFWPIVYVNAFASMVQIDPSLKEQAENL 206 Query: 180 GLGLFRIYRHILLPLSAPAF----VVVVIWQMTSIWNEFLFAV----------TITQNPR 225 G R++R + LPLS P +V I+ M + F V I +P Sbjct: 207 GARGLRLHRTVTLPLSMPGITAGAALVFIFSMEDLAAPIAFRVDNVISRWIVNEILASPS 266 Query: 226 VQPITV 231 V+ I+V Sbjct: 267 VEEISV 272 >gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease ModB [Aeropyrum pernix K1] Length = 261 Score = 41.2 bits (95), Expect = 3e-05 Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 9/134 (6%) Query: 112 AFVLFGMFIPYQSILIPLVQFLSRIRLYGTLPGLILTHVVYGIPITTLIFRNYYTEIPGS 171 A +LF + P SI L F S +IL ++ PI + ++ +P Sbjct: 103 ALILFTRYPPLNSISETLGLFFSP-------KAVILAQLLVTTPIAVSMLTGVFSMVPRE 155 Query: 172 LIEAAQIDGLGLFRIYRHILLPLSAPAFVVVVIWQMTSIWNEFLFAVTITQN--PRVQPI 229 L EAA+ G G +I I+LPLS P + + EF + + N R + + Sbjct: 156 LEEAAEAYGAGRLQILIRIVLPLSLPGILSALAVTFFRALGEFGATLVLAGNIPGRTETL 215 Query: 230 TVALQNLAGSQIVE 243 +AL N VE Sbjct: 216 PLALYNAISLADVE 229 >gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyrum pernix K1] Length = 314 Score = 40.8 bits (94), Expect = 4e-05 Identities = 22/71 (30%), Positives = 36/71 (50%) Query: 140 GTLPGLILTHVVYGIPITTLIFRNYYTEIPGSLIEAAQIDGLGLFRIYRHILLPLSAPAF 199 GT LI + + G+ ++F + IP I AA++DG I R I++P+ Sbjct: 165 GTWWILIFVNGLVGVSFGMIVFYSAIRSIPWEYIAAARVDGASNLVIIRRIIVPMIRWHL 224 Query: 200 VVVVIWQMTSI 210 + V +WQM S+ Sbjct: 225 LFVTVWQMLSL 235 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.142 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 230,605 Number of Sequences: 1700 Number of extensions: 8930 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 7 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 7 length of query: 280 length of database: 492,079 effective HSP length: 76 effective length of query: 204 effective length of database: 362,879 effective search space: 74027316 effective search space used: 74027316 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718405|ref|YP_003873937.1| transporter [Spirochaeta thermophila DSM 6192] (298 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 94 3e-21 gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum... 67 5e-13 gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyru... 45 2e-06 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 94.4 bits (233), Expect = 3e-21 Identities = 56/184 (30%), Positives = 100/184 (54%), Gaps = 12/184 (6%) Query: 100 GEDVFRTIYLFPMAISFVVTGVAWRWIFNPTVGLNALLQK-LGIPV---TWGWYTDPSTV 155 G + +TI M I VV G+ R++F+ VG+ L+ K LG+ TW Y Sbjct: 107 GSSIVKTIVFIGMVIPMVVGGLIVRFMFDEYVGVVPLVFKALGVDFLAKTWTNYPQ---- 162 Query: 156 GPFHVALIPLIIAASWQFSGYTMAMYLAALRGIPEDVIEASMIDGATYFQRLTLVILPLL 215 ++L+ LI+ + W ++G+++ +Y AAL IP IEA+ IDGA ++ ++ PL+ Sbjct: 163 ----LSLLSLILGSVWLWTGFSLTVYSAALGSIPSSFIEAARIDGAGHWHIFWKIVFPLV 218 Query: 216 KPITLSALIVLGHISLKIFDLVYVMTGKGPAFATDFPGIFMFETTFRGNHYAQGAVISMV 275 +P T+ +++ LKIFD+VYV T GP +++ + M++ R Y + ++++ Sbjct: 219 RPATIIVVVMTMLWDLKIFDIVYVATLGGPGGSSNVLALVMYQYMARALDYQAASAVAVI 278 Query: 276 MLFL 279 + L Sbjct: 279 LTLL 282 >gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum pernix K1] Length = 288 Score = 67.0 bits (162), Expect = 5e-13 Identities = 62/290 (21%), Positives = 131/290 (45%), Gaps = 21/290 (7%) Query: 9 LKAAAVVLPSIIAVGIFVYGFIIWSFRVSVSAWDGILPNFTYVGFKNYIETFQTQRFQTD 68 +KA ++ P+I+ + +F+ II SFR++ I +F V F Y + F + Sbjct: 12 VKAWLLLSPTILYLAVFIAYPIIDSFRIAFVKNGSI--SFEAVDFLLYSPLSE---FWSA 66 Query: 69 LWNXXXXXXXXXXXXXXXXXXXXXXXERSVKGEDVFRTIYLFPMAISFVVTGVAWRWIFN 128 L + +G D + + P+A+S + G+ W + Sbjct: 67 LKYTFLLAILVIPTETLLALTAVILLFKRFRGRDAVIYVLVMPLALSDLAAGLIWYSMLT 126 Query: 129 PTVGLNALLQKLGI---PVTWGWYTDPSTVGPFHVALIPLIIAASWQFSGYTMAMYLAAL 185 LN LL +G+ P+ + Y + + + + +A W+ + + A Sbjct: 127 GKGFLNKLLLNMGLISDPIIFFGYENR------WLTFLAVYLAEVWRSTAIVFVILFAGA 180 Query: 186 RGIPEDVIEASMIDGATYFQRLTLVILPLLKPITLSALIVLGHISLKIFDLVYVMTGKG- 244 + I ++V EA+ + GA+++ +L +++P++KP +AL++ + ++F +V+++ G+ Sbjct: 181 QLINKEVFEAAEVFGASFYVKLRHILIPMIKPSLQAALLIRTLFAFQVFAVVWILAGRDI 240 Query: 245 PAFATDFPGIFMFETTFRGNHYAQGAVISMVMLFLVAVVIVPYLVSVFRE 294 P A + + + + Y A+ ++V+ L A + V Y + VFRE Sbjct: 241 PVLAGE-----AYYSIVELHKYDVAALYAIVIALLSASIGVVY-IRVFRE 284 >gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyrum pernix K1] Length = 314 Score = 45.1 bits (105), Expect = 2e-06 Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 11/118 (9%) Query: 104 FRTIYLFPMAISFVVTGVAWRWIFNP-TVG-LNALLQKLGI---PVTWGWYTDPSTVGPF 158 +R ++L P V + W + F+ +G LN +L G+ P+ WG Y P +G + Sbjct: 110 YRLLWLLPRMTPVAVYSLLWYYFFHSDAIGTLNRILLLAGVIDKPINWGSYMLP--LGTW 167 Query: 159 HVALIPLIIAASWQFSGYTMAMYLAALRGIPEDVIEASMIDGATYFQRLTLVILPLLK 216 + LI + M ++ +A+R IP + I A+ +DGA+ + +I+P+++ Sbjct: 168 WI----LIFVNGLVGVSFGMIVFYSAIRSIPWEYIAAARVDGASNLVIIRRIIVPMIR 221 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.143 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 278,899 Number of Sequences: 1700 Number of extensions: 11332 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 4 length of query: 298 length of database: 492,079 effective HSP length: 76 effective length of query: 222 effective length of database: 362,879 effective search space: 80559138 effective search space used: 80559138 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718406|ref|YP_003873938.1| transporter [Spirochaeta thermophila DSM 6192] (446 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430849|ref|NP_146914.2| ABC transporter substrate-binding ... 64 1e-11 >gi|118430849|ref|NP_146914.2| ABC transporter substrate-binding protein [Aeropyrum pernix K1] Length = 468 Score = 63.5 bits (153), Expect = 1e-11 Identities = 55/237 (23%), Positives = 100/237 (42%), Gaps = 18/237 (7%) Query: 131 WVVAGAMEPITFIFEENGFL--DKYPKGVIDIISYQGEIYSVPVNIHRSNVLWYNKKVFD 188 W+V A + + E G + D+Y G++D + + +++ VP + WY K F Sbjct: 157 WIVEMAQKG--HVIEVTGLINEDEYVGGILDNVKWNNKLWGVPFTMWLKPGFWYKKSFFA 214 Query: 189 QNGLTPPRTFDEFFSVAETLADKGI----TPLALGDNGIWASTHLLESVLAGSLGPERYR 244 ++GL+ P +++EF + + + KGI P+ GD+ W + + E + GPE Sbjct: 215 KHGLSEPNSWEEFLQLLDQI--KGIEGIKNPIVSGDSVGWPLSDVTEHFIIAFGGPELQY 272 Query: 245 GLWNGTTRWDGAETKRALTTFVRMLEYVNSDHAALSWDAAAQYVADGKAAMTIMGDWAHG 304 L G + + ++E + W +A + + A+ MG W G Sbjct: 273 KLITGEVSFTDPQVVEIFEKLAMLIEQ-GYFSEPIEWTSAVEKWWAEEYALYFMGTWITG 331 Query: 305 YFKSKGLKVGVDYGWSPSPSTSGMFIMLSDSFGLPKGAPHRDAAIKWLTVCASREGQ 361 + D + P P G+ + +D +PK + +AA K L + EGQ Sbjct: 332 MVEDPN-----DLAFFPLPGARGV-VGGTDYAFIPKYTENLEAA-KLLLQYLATEGQ 381 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.134 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 451,695 Number of Sequences: 1700 Number of extensions: 19749 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 1 length of query: 446 length of database: 492,079 effective HSP length: 80 effective length of query: 366 effective length of database: 356,079 effective search space: 130324914 effective search space used: 130324914 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718407|ref|YP_003873939.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (450 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 436,744 Number of Sequences: 1700 Number of extensions: 19774 Number of successful extensions: 83 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83 Number of HSP's gapped (non-prelim): 0 length of query: 450 length of database: 492,079 effective HSP length: 80 effective length of query: 370 effective length of database: 356,079 effective search space: 131749230 effective search space used: 131749230 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718408|ref|YP_003873940.1| sensor protein ZraS [Spirochaeta thermophila DSM 6192] (678 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 599,272 Number of Sequences: 1700 Number of extensions: 24364 Number of successful extensions: 64 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 0 length of query: 678 length of database: 492,079 effective HSP length: 83 effective length of query: 595 effective length of database: 350,979 effective search space: 208832505 effective search space used: 208832505 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718409|ref|YP_003873941.1| endoglucanase [Spirochaeta thermophila DSM 6192] (334 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.143 0.486 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 426,407 Number of Sequences: 1700 Number of extensions: 21316 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 334 length of database: 492,079 effective HSP length: 77 effective length of query: 257 effective length of database: 361,179 effective search space: 92823003 effective search space used: 92823003 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718410|ref|YP_003873942.1| hypothetical protein STHERM_c07110 [Spirochaeta thermophila DSM 6192] (538 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 425,380 Number of Sequences: 1700 Number of extensions: 17172 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 0 length of query: 538 length of database: 492,079 effective HSP length: 81 effective length of query: 457 effective length of database: 354,379 effective search space: 161951203 effective search space used: 161951203 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718411|ref|YP_003873943.1| hypothetical protein STHERM_c07120 [Spirochaeta thermophila DSM 6192] (521 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 423,937 Number of Sequences: 1700 Number of extensions: 18367 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 0 length of query: 521 length of database: 492,079 effective HSP length: 81 effective length of query: 440 effective length of database: 354,379 effective search space: 155926760 effective search space used: 155926760 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718412|ref|YP_003873944.1| hypothetical protein STHERM_c07130 [Spirochaeta thermophila DSM 6192] (524 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431549|ref|NP_148085.2| aspartate carbamoyltransferase cat... 95 5e-21 gi|118431681|ref|NP_148311.2| ornithine carbamoyltransferase [Ae... 41 8e-05 >gi|118431549|ref|NP_148085.2| aspartate carbamoyltransferase catalytic subunit [Aeropyrum pernix K1] Length = 308 Score = 94.7 bits (234), Expect = 5e-21 Identities = 96/342 (28%), Positives = 151/342 (44%), Gaps = 47/342 (13%) Query: 1 MSEHPFRGRTIATVRDLSVDEQYYLYTKAREFKEGFEKGGDISKFRIEDPSMAVYLFFLE 60 M+ +PF+GR + ++ D + + L+ +A + K G V L F E Sbjct: 1 MAGNPFKGRDVISITDFTRGDLELLFRQADVIES---KAGSKPL-----DGKVVALAFFE 52 Query: 61 DSTRTKESFRNAALFHG---VKVNDFNVLSSSFNKKESITDTVKMLVGYSKRTIVVTRSR 117 STRT+ SF A G + ++ +S + K E++ DT+ ML Y+ +V R R Sbjct: 53 PSTRTRLSFETAVKRLGGSTLLISGEEAISVA--KGENLADTITMLDSYADA--IVIRHR 108 Query: 118 QEGLCRWLEQAVGAYARDVGRDLVAFINGGDGKHEHPTQEFLDEFSFLEHLGWDRSGIHI 177 EG YA +V V INGGDG+ HPTQ LD ++ G G+ Sbjct: 109 YEG--------AALYAAEVAEKPV--INGGDGRQHHPTQAMLDLYTVYSLFG-TVDGLTY 157 Query: 178 ALVGDLFHGRTVHSKVDGLKVFRQVEVDLIAPDDLAMPEHYVRKMELAGFTVRSFPSIEA 237 ++GDL +GR S + GL +F V LI+P L + +E G ++ Sbjct: 158 GVLGDLRYGRAASSFILGLSLFNPRHVYLISPPQLRARREVLEALEKRGVPYTEVERLQD 217 Query: 238 YLSQRNIAPIWYFTRLQLERMGEHILEKAPMLRKAVTFRKEF---MDLL----PEGTRFY 290 L + ++ Y TR+Q ER+ P R+ + R + +DLL E + Sbjct: 218 VLGELDVL---YVTRIQKERI--------PDPREYESLRGSYRVTLDLLESFAKESLKVL 266 Query: 291 HPLPRHRETPTIPHFLDATPLNGWDRQSINGYFTRAVLLSMV 332 HPLPR E I +D++ + Q+ G R L+++V Sbjct: 267 HPLPRVDE---IDFSVDSSRYQAYFTQARLGVRVRMALMNLV 305 >gi|118431681|ref|NP_148311.2| ornithine carbamoyltransferase [Aeropyrum pernix K1] Length = 314 Score = 40.8 bits (94), Expect = 8e-05 Identities = 71/336 (21%), Positives = 120/336 (35%), Gaps = 27/336 (8%) Query: 1 MSEHPFRGRTIATVRDLSVDEQYYLYTKAREFKEGFEKGGDISKFRIEDPSMAVYLFFLE 60 MS H RGR + + D + +E ++ E K + G + +V L F + Sbjct: 1 MSLHRLRGRHLLWLADYTGEEIRHMVELTLEMKRRYYAGERVIPVL---RGRSVGLLFEK 57 Query: 61 DSTRTKESFRNAALFHGVKVNDFNVLSSSFNKKESITDTVKMLVGYSKRTIVVTRSRQEG 120 STRT+ S A G + + E++ DT ++L Y + RS + Sbjct: 58 PSTRTRISLEVAVAQLGGHTVYMTPSETQLGRGETVADTARVLSRYLDAIVARVRSHKT- 116 Query: 121 LCRWLEQAVGAYARDVGRDLVAFINGGDGKHEHPTQEFLDEFSFLEHLGWDRSGIHIALV 180 ++ R + G HP Q D + LE G G+ +A V Sbjct: 117 ------------LEEMARHASIPVINGLSDLTHPLQAIADMATILEKKG-RLEGVKLAFV 163 Query: 181 GD----LFHGRTVHSKVDGLKVFRQVEVDLIAPDDLAMPEHYVRKMELAGFTVRSFPSIE 236 GD + H + GL + I PD+ + ++ E +G +V + Sbjct: 164 GDGADNVLHSLLLAGSKLGLHI-TVATPPQIRPDERIL-SIALKAAEESGGSVEIVS--D 219 Query: 237 AYLSQRNIAPIWYFTRLQLERMGEHILEKAPMLRKAVTFRKEFMDLLPEGTRFYHPLPRH 296 Y + R + +T + + E + E+ L K + M+ F H LP Sbjct: 220 PYEAVRGADVV--YTDVWVSMGQESMAEEKVQLLKPYQVNAKLMEATGGRAIFMHCLPAK 277 Query: 297 RETPTIPHFLDATPLNGWDRQSINGYFTRAVLLSMV 332 R +D WD+ + +AVL +V Sbjct: 278 RGQEVTDEVIDGPWSAVWDQAENRLHAHKAVLSLLV 313 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 543,467 Number of Sequences: 1700 Number of extensions: 24313 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 2 length of query: 524 length of database: 492,079 effective HSP length: 81 effective length of query: 443 effective length of database: 354,379 effective search space: 156989897 effective search space used: 156989897 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718413|ref|YP_003873945.1| ParB-like nuclease domain-containing protein [Spirochaeta thermophila DSM 6192] (134 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 129,342 Number of Sequences: 1700 Number of extensions: 5145 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 134 length of database: 492,079 effective HSP length: 68 effective length of query: 66 effective length of database: 376,479 effective search space: 24847614 effective search space used: 24847614 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718414|ref|YP_003873946.1| penicillin-binding protein [Spirochaeta thermophila DSM 6192] (844 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 879,111 Number of Sequences: 1700 Number of extensions: 40613 Number of successful extensions: 97 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97 Number of HSP's gapped (non-prelim): 0 length of query: 844 length of database: 492,079 effective HSP length: 85 effective length of query: 759 effective length of database: 347,579 effective search space: 263812461 effective search space used: 263812461 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718415|ref|YP_003873947.1| hypothetical protein STHERM_c07160 [Spirochaeta thermophila DSM 6192] (266 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 276,688 Number of Sequences: 1700 Number of extensions: 12175 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 266 length of database: 492,079 effective HSP length: 75 effective length of query: 191 effective length of database: 364,579 effective search space: 69634589 effective search space used: 69634589 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718416|ref|YP_003873948.1| hypothetical protein STHERM_c07170 [Spirochaeta thermophila DSM 6192] (315 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.141 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 322,669 Number of Sequences: 1700 Number of extensions: 15013 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 315 length of database: 492,079 effective HSP length: 77 effective length of query: 238 effective length of database: 361,179 effective search space: 85960602 effective search space used: 85960602 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718417|ref|YP_003873949.1| M23/M37 peptidase domain-containing protein [Spirochaeta thermophila DSM 6192] (296 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 276,685 Number of Sequences: 1700 Number of extensions: 11763 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 0 length of query: 296 length of database: 492,079 effective HSP length: 76 effective length of query: 220 effective length of database: 362,879 effective search space: 79833380 effective search space used: 79833380 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718418|ref|YP_003873950.1| hypothetical protein STHERM_c07190 [Spirochaeta thermophila DSM 6192] (132 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.143 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 111,148 Number of Sequences: 1700 Number of extensions: 4438 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 132 length of database: 492,079 effective HSP length: 68 effective length of query: 64 effective length of database: 376,479 effective search space: 24094656 effective search space used: 24094656 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718419|ref|YP_003873951.1| hypothetical protein STHERM_c07200 [Spirochaeta thermophila DSM 6192] (320 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.132 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 318,744 Number of Sequences: 1700 Number of extensions: 13911 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 320 length of database: 492,079 effective HSP length: 77 effective length of query: 243 effective length of database: 361,179 effective search space: 87766497 effective search space used: 87766497 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718420|ref|YP_003873952.1| hypothetical protein STHERM_c07210 [Spirochaeta thermophila DSM 6192] (327 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.139 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 299,347 Number of Sequences: 1700 Number of extensions: 13324 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61 Number of HSP's gapped (non-prelim): 0 length of query: 327 length of database: 492,079 effective HSP length: 77 effective length of query: 250 effective length of database: 361,179 effective search space: 90294750 effective search space used: 90294750 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718421|ref|YP_003873953.1| transporter [Spirochaeta thermophila DSM 6192] (270 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 119 8e-29 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 116 7e-28 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 115 9e-28 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 115 2e-27 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 114 2e-27 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 108 1e-25 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 106 7e-25 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 101 2e-23 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 100 7e-23 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 86 8e-19 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 85 2e-18 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 84 5e-18 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 83 8e-18 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 82 1e-17 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 81 2e-17 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 80 4e-17 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 80 5e-17 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 79 9e-17 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 79 2e-16 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 79 2e-16 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 73 9e-15 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 73 9e-15 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 72 1e-14 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 71 3e-14 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 70 6e-14 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 69 1e-13 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 69 1e-13 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 68 3e-13 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 64 3e-12 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 64 3e-12 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 64 5e-12 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 64 5e-12 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 63 9e-12 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 59 1e-10 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 58 3e-10 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 56 8e-10 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 55 2e-09 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 55 2e-09 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 54 4e-09 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 47 4e-07 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 119 bits (298), Expect = 8e-29 Identities = 76/231 (32%), Positives = 135/231 (58%), Gaps = 6/231 (2%) Query: 7 RLEEVTATI---EGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRII 63 RL EV + G +LK + + + G VIMG SGSGKSTLLK + L E + G I+ Sbjct: 3 RLLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIV 62 Query: 64 FGEEEITRLSHERLLSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQALLRRI 123 F ++TRLS +L +RR+ ++ Q +L+ +M++L+N+T P+ + + R A R + Sbjct: 63 FRGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAEERAV 122 Query: 124 ERMCEEFLFDDDLSLR-PSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMI 182 + + L +DL+ R P+++S G+++ A+ RAL +EP +L LDEPTS++DP ++ Sbjct: 123 KYL--SMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVL 180 Query: 183 QRLRKEKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQVIRST 233 + L + G ++I T++ +AD + +++G + E G S+++ + Sbjct: 181 EALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSELVEGS 231 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 116 bits (290), Expect = 7e-28 Identities = 75/228 (32%), Positives = 128/228 (56%), Gaps = 11/228 (4%) Query: 6 IRLEEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFG 65 +RL+ V A+ V L+ ++ PE T ++G SG GK+T+LKV+ GL + +GR+ FG Sbjct: 6 VRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFG 65 Query: 66 EEEITRLSHERLLSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQALLRRIER 125 + T L E RR FVFQD AL+ +M++ N+ + R S + R++E Sbjct: 66 GVDYTGLPPE-----RRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGE--VRRQVEW 118 Query: 126 MCEEFLFD---DDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMI 182 E + + R + +S G+++ + RA+ EP VL LDEP S +D + +R++ Sbjct: 119 ALETVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLL 178 Query: 183 QRLRKEKGK-GVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQV 229 L++ + K G ++I T+D LAD ++I+++GR+V+ G+ S+V Sbjct: 179 AELKRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEV 226 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 115 bits (289), Expect = 9e-28 Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 6 IRLEEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFG 65 IRLE VT L ++L + +G ++G SG GK+T L+V+ G + ++GR+ G Sbjct: 4 IRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIG 63 Query: 66 EEEITRLSHERLLSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQALLRRIER 125 ++T L R TA VFQ+ ALW +M + N+ + R R ++RR+ Sbjct: 64 SRDVTMLK-----PYERNTAMVFQNYALWPHMRVFDNIAYGLKLR--KLPRSEIVRRVRW 116 Query: 126 MCEEFLFDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRL 185 E D L P Q+S G+++ + RA++ EP VL +DEP S++D + +M + + Sbjct: 117 AAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEI 176 Query: 186 -RKEKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQV 229 R +K GV+I+ T+D +++ V ++ GR+ + G+ +V Sbjct: 177 VRLQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEV 221 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 115 bits (287), Expect = 2e-27 Identities = 76/237 (32%), Positives = 133/237 (56%), Gaps = 7/237 (2%) Query: 1 MRRSCIRLEEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKG 60 M+ +R+ + I ILK I+ + G T IMG SGSGKSTL++V+N L ++ G Sbjct: 1 MKLMDVRVSGLNVWITDKHILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPG 60 Query: 61 RIIFGEEEITRLS--HERLLSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQA 118 + GE I ++ E ++RR T VFQ+ + +M++ +N+ + + +++ Sbjct: 61 ARVEGEVWINNMNVMKEDPYNIRRYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKE 120 Query: 119 LLRRIERMCE-EFLFD---DDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVD 174 L +E + L+D D LS P Q+S G+R+ S RAL ++PRVL LDEPT+++D Sbjct: 121 LDEIVEWALKMAHLWDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANID 180 Query: 175 PAVCERMIQRL-RKEKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQVI 230 P ++ Q + K + ++I T+ P+ A ++D+++ L EGR++E G +++ Sbjct: 181 PVSTVKIEQSIVEYAKEEMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELV 237 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 114 bits (286), Expect = 2e-27 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 6 IRLEEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFG 65 +RLE + LK I LE+ +G V++G SG GK+T L+++ GL+ + GR+ F Sbjct: 4 VRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFD 63 Query: 66 EEEITRLSHERLLSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQALLRRIER 125 ++T L + R A VFQ ALW +M + N+ P+ + R ++RR+ Sbjct: 64 GRDVTGLPPK-----DRNVAMVFQSYALWPHMRVFDNIAFPL--KIKKLPRDEIVRRVRW 116 Query: 126 MCEEFLFDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRL 185 E D L P Q+S G+++ + RA++ EP VL +DEP S++D + +M + Sbjct: 117 AAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEI 176 Query: 186 RK-EKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQV 229 +K ++ GV++I T+D + D ++++ G + + G+ S V Sbjct: 177 KKLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDV 221 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 108 bits (270), Expect = 1e-25 Identities = 74/263 (28%), Positives = 138/263 (52%), Gaps = 11/263 (4%) Query: 6 IRLEEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFG 65 IRLE V V + + L + +G V++G SG GK+T L+++ GL+ ++GRI+ Sbjct: 4 IRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILID 63 Query: 66 EEEITRLSHERLLSMRRQTAFVFQDAALWANMSLLQNL--TLPVLQRDPSADRQALLRRI 123 E++T + R A VFQ+ AL+ +MS+ N+ TL + +++ + + RR+ Sbjct: 64 GEDVTFKDPK-----DRNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRV 118 Query: 124 ERMCEEFLFDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQ 183 + + +D L +P Q+S G+++ + RAL+ P+V +DEP S++D + M Sbjct: 119 IEVAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRA 178 Query: 184 RLRK-EKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQVIRSTNPETIEALS 242 L+K +K ++ + T+D ++AD + ++ +GR+V+ G+ +V T A Sbjct: 179 ELKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEVYMRPK-HTFVATF 237 Query: 243 DVLSQAASYDMDILSLLDGEDVW 265 + D+ S+ GED+W Sbjct: 238 IGAPPMNLVECDVESV--GEDLW 258 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 106 bits (264), Expect = 7e-25 Identities = 76/230 (33%), Positives = 125/230 (54%), Gaps = 14/230 (6%) Query: 16 EGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFGEEEITRLSHE 75 E + L+E++L V G IMG SGSGK+TLL ++ G+ GR+I E++ E Sbjct: 25 ERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGE 84 Query: 76 RLLSMR-RQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADR---QALLRRIERMCEEFL 131 L R + +VFQ L ++ L+N+ LP+ A+R Q LLRR+ +E Sbjct: 85 ELRRFRLERVGYVFQQHNLIPTLTALENILLPMALAG-KANRLRGQELLRRVGLGGKERR 143 Query: 132 FDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRLRKE-KG 190 + P ++S GE++ + AL +P ++ DEPT +D A ER+++ L +E Sbjct: 144 Y-------PEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEAHS 196 Query: 191 KGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQVIRSTNPETIEA 240 +G +++ T+DPRV A +AD V ++++GRL S S++ +T +EA Sbjct: 197 RGKTVVLTTHDPRV-ARMADRVAVIEDGRLRGVYSPSRIAGATGFGEVEA 245 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 101 bits (252), Expect = 2e-23 Identities = 59/227 (25%), Positives = 121/227 (53%), Gaps = 9/227 (3%) Query: 6 IRLEEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFG 65 I+LE+V+A + L +++LE+P G+ TVI+G +G+GKSTLLK M G + KGR++F Sbjct: 6 IKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLFE 65 Query: 66 EEEITRL-SHERLLSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQALLRRIE 124 ++T + H+R + F+FQ ++ +++ +NL L R R+E Sbjct: 66 NTDVTHMPPHDR---AKIGMTFIFQLENIFRELTVYENLRLAGYDLPEDVFRD----RLE 118 Query: 125 RMCEEF-LFDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQ 183 + F + L + +S GER++ + ++ +P+V +DEPT+ + P + + ++ Sbjct: 119 EVFSMFPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLS 178 Query: 184 RLRKEKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQVI 230 +R +G +++ + + + D+ +++ GR+ G +++ Sbjct: 179 YVRILNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDGPAEELL 225 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 99.8 bits (247), Expect = 7e-23 Identities = 63/220 (28%), Positives = 119/220 (54%), Gaps = 8/220 (3%) Query: 6 IRLEEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFG 65 ++LE V V ++++ L + + I+G SGSGK+TLL ++ G+ + +GRI F Sbjct: 4 VKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFN 63 Query: 66 EEEITRLSHERLLSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQALLRRIER 125 + ++T L +R VFQ+ AL+ +M++ +N+ P+ R + A+ ++ Sbjct: 64 DVDVTDLPPN-----KRNIGLVFQNYALYPHMTVYENIAFPLRLR--NFGEPAIKEKVLS 116 Query: 126 MCEEFLFDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRL 185 + + + L P+Q+S G+++ + RAL+ EP VL LDEP S++D + ++ L Sbjct: 117 VAKLLGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSEL 176 Query: 186 RK-EKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETG 224 +K +K G++ I T+D +AD + I+ G + + G Sbjct: 177 KKLQKELGITAIYVTHDQSEALAMADRIAIIASGVIQQVG 216 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 86.3 bits (212), Expect = 8e-19 Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 16/219 (7%) Query: 6 IRLEEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFG 65 +RLE V + G +L+ ++L + G V+ G +GSGK+TLL++ GL E +GR+ +G Sbjct: 5 LRLENVWKMLGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRVSWG 64 Query: 66 EEEITRLSHERLLSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQALLRRIER 125 R + T V+ D +W N+ +L L P A L +E+ Sbjct: 65 CPRGPR----GCVGYVGHTPMVYGDLTVWENVEFFSSLHGGSLGDYPLAAEAWRLLGLEK 120 Query: 126 MCEEFLFDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRL 185 SQ+S G R+ +RALL EPR+L LDE + +D E + + L Sbjct: 121 YGSHL---------ASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLL 171 Query: 186 RKEKGKGVSIIAATN--DPRVCANLADEVIILKEGRLVE 222 R G+G++++ T +PR LA V L++G L E Sbjct: 172 RLALGEGLALLMTTPLLEPRY-LGLASRVYTLQDGLLAE 209 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 84.7 bits (208), Expect = 2e-18 Identities = 55/219 (25%), Positives = 115/219 (52%), Gaps = 15/219 (6%) Query: 18 VSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFGE-----EEITRL 72 + ++K ++L V +G T ++G +G+GK+TLLK ++G+ + E+GR+ G E+IT Sbjct: 18 ILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNR 77 Query: 73 SHERLLSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADR-QALLRRIERMCEEFL 131 + + RR +V + ++ ++ +NL S D +++L R+ E Sbjct: 78 EPDEI--ARRGVIYVMEGRRIFKELTTEENLVSVAYAAGASRDDIRSVLSYFPRLKER-- 133 Query: 132 FDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRLRK-EKG 190 L + +S GE+++ + ALL P++L LDEP+ + P + ++ ++ + Sbjct: 134 ----LGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHRE 189 Query: 191 KGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQV 229 +G++I+ A + R ++D +++ GR+V GS ++ Sbjct: 190 EGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEEL 228 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 83.6 bits (205), Expect = 5e-18 Identities = 56/248 (22%), Positives = 121/248 (48%), Gaps = 17/248 (6%) Query: 6 IRLEEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFG 65 +R+E++ G+ L ++ LE+ G T+++G +GSGK+TL+ V++G + + GR++F Sbjct: 7 LRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLFK 66 Query: 66 EEEITRLSHERLLSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQALLRRI-- 123 +IT +S + + FQ + N+++L+N+ + L RR+ Sbjct: 67 GRDITGMSPHEISKL--GLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWL 124 Query: 124 --ERMCEEFLF--------DDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSV 173 E+ F D R ++S G+ K+ RA++ ++ +DEP + V Sbjct: 125 GFEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGV 184 Query: 174 DPAVCERMIQRLR-KEKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQVIRS 232 +P + +++R++ + KG++ + + + D V + G+++ +G +V+ Sbjct: 185 NPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEVL-- 242 Query: 233 TNPETIEA 240 NP +E+ Sbjct: 243 NNPVVLES 250 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 82.8 bits (203), Expect = 8e-18 Identities = 69/244 (28%), Positives = 120/244 (49%), Gaps = 25/244 (10%) Query: 1 MRRSCIRLEEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKG 60 ++R R + V ++GV L + EG I+G SG GK+TL K + G++E G Sbjct: 24 LKRILGRPDAVVRAVDGVD------LGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDG 77 Query: 61 RIIFGEEEIT--RLSHERLLSMRRQTAFVFQD--AALWANMSLLQNLTLPVLQRDPSADR 116 I + E +T RL+ +R L RR+ VFQD +L M + + P++ + Sbjct: 78 AIYYRGELLTPHRLARDRRL--RRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGE 135 Query: 117 QALLRRIERM-------CEEFLFDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEP 169 +A R +E + EF + +P Q+S G+R+ + R L++EP V+ DEP Sbjct: 136 EARRRAVEMLETVGLTPGREFYW-----RKPHQLSGGQRQRVAIARTLVLEPEVIVADEP 190 Query: 170 TSSVDPAVCERMIQRLRK-EKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQ 228 S +D ++ ++ + + G +I+ T+D V +AD + ++ G++VE G Sbjct: 191 VSMIDVSMRASILDLIMDYHRRTGATIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRS 250 Query: 229 VIRS 232 VI + Sbjct: 251 VIEN 254 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 82.4 bits (202), Expect = 1e-17 Identities = 62/234 (26%), Positives = 117/234 (50%), Gaps = 15/234 (6%) Query: 11 VTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFGEEEIT 70 V +++G +L+ ++L V G V+ GL+G+GK+T L+V+ GL + G + Sbjct: 20 VAKSVKGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPW 79 Query: 71 RLSHERLLSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQALLRRIERMCEEF 130 ER+ + + ++ +DA+++ ++ ++N+ A + R +E + E Sbjct: 80 GGGFERV---KGEVGYLPEDASVYERLTGMENILF-------YARLYSGWRDVEELVENA 129 Query: 131 LF-----DDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRL 185 +F +DL+ R S G ++ L+ +PR++ LDEPTS VDP R+ + L Sbjct: 130 VFYSGLSREDLARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKIL 189 Query: 186 RKEKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQVIRSTNPETIE 239 R +G +I+ T+D + +AD V I+ G V +G +++ ET+E Sbjct: 190 RGLSREGRAILVTTHDLALAEEIADRVTIIHGGSTVASGPPYRLVEEYCGETLE 243 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 81.3 bits (199), Expect = 2e-17 Identities = 63/236 (26%), Positives = 116/236 (49%), Gaps = 11/236 (4%) Query: 6 IRLEEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFG 65 + E V + G +LK+++L VP G ++G +G+GK+TL + + GL ++GR+ Sbjct: 9 VEAEGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALL 68 Query: 66 EEEITRLSHERLLSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQALLRRIER 125 E + R S+ R+ A++ +D + NM+ + L L D + L R Sbjct: 69 GEPVERAGG----SLFRRVAYLPEDGEPYRNMTGHEFLRL-YASIYGVEDLEGYLEEASR 123 Query: 126 MCEEFLFDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRL 185 + L R S G R+ L ++P + LDEPT+ +DP V I+RL Sbjct: 124 LSG---LGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDP-VYSVGIRRL 179 Query: 186 RKEKGK--GVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQVIRSTNPETIE 239 KE + GV+++ ++++ ++ E+ ++ GR+V +GS + +R T ++E Sbjct: 180 LKEYSERHGVTVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGEAVRRTGASSLE 235 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 80.5 bits (197), Expect = 4e-17 Identities = 63/233 (27%), Positives = 114/233 (48%), Gaps = 6/233 (2%) Query: 8 LEEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFGEE 67 + +V G+ LK ++ V G ++G +G+GK+TL +++G+ ++GR+I+ Sbjct: 7 VRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYKGV 66 Query: 68 EITRLSHERLLSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQALLRRIERMC 127 +IT R R A FQ AN+++L N+ + L R R+A R +E + Sbjct: 67 DITGWPAYR--RSRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDI-REARERAMEAID 123 Query: 128 EEFLFDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRLRK 187 L + + ++L E+K RAL +P +L LDE + + P + ++ L + Sbjct: 124 MVGLAGKE-DILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLE 182 Query: 188 EKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQVIRSTNPETIEA 240 +G++II + R N A+ VI+L G + G+ +V ++N IEA Sbjct: 183 ISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREV--ASNKLVIEA 233 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 80.1 bits (196), Expect = 5e-17 Identities = 57/216 (26%), Positives = 111/216 (51%), Gaps = 6/216 (2%) Query: 18 VSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFGEEEITRLSHERL 77 V + +T+ +P G T ++G SGSGK+T +V+ L+E GRI F ++ +L L Sbjct: 49 VKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGL 108 Query: 78 LSMRRQTAFVFQD--AALWANMSLLQNLTLPV-LQRDPSADRQALLRRIERMCEEFLFDD 134 RR+ +FQD +L ++ + P+ + D Q + + + + L + Sbjct: 109 KEFRRRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYI--VSLLYQVGLNET 166 Query: 135 DLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRLRKEKGK-GV 193 L P + S G+R+ + R L ++P + LDEPTS++D +V +++ L+ + K + Sbjct: 167 HLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSL 226 Query: 194 SIIAATNDPRVCANLADEVIILKEGRLVETGSLSQV 229 + + ++D V ++D + ++ G++VE G +V Sbjct: 227 TYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEV 262 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 79.3 bits (194), Expect = 9e-17 Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 10/208 (4%) Query: 16 EGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRI-IFGEEEITRLSH 74 +GV L + + G ++G +G+GK+TL++++ G + G I ++G + R Sbjct: 24 DGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYVWGRKVSWRGPW 83 Query: 75 ERLLSMRRQTAFVFQDAALWANMSLLQNLT--LPVLQRDPSADRQALLRRIERMCEEFLF 132 + ++R A V+Q L +M++ +N+ L L S R+ L ER+ E Sbjct: 84 D---AIRNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRTLETAERLGLEI-- 138 Query: 133 DDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRLRKEKGKG 192 DL+ + + +G R+ ++AL +VL LDEPTS++ P E++ LR K G Sbjct: 139 --DLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLRLLKDMG 196 Query: 193 VSIIAATNDPRVCANLADEVIILKEGRL 220 VS++ T+ +AD V +L+ GR+ Sbjct: 197 VSVVYITHKLGEVVRVADRVTVLRRGRV 224 Score = 47.0 bits (110), Expect = 5e-07 Identities = 58/248 (23%), Positives = 104/248 (41%), Gaps = 21/248 (8%) Query: 3 RSCIRLEEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRI 62 R + + V+ ++GV ++E++LEV EG I G++G+G+ L+ + GL+ +G I Sbjct: 260 RELLSVRGVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSI 319 Query: 63 IFGEEEITRLSHERLLSMRRQTAFVFQD--AALWANMSLLQNLTLPVLQRDPSADRQALL 120 E R L R ++ D L + S+ +N+ +A + LL Sbjct: 320 ----EVQGRRIEGSLDFYRAGGGYIAGDRGKVLAMDYSVAENIAFLYY----TASKTLLL 371 Query: 121 RR------IERMCEEFLFDDDLSLRP-SQISLGERKIASFMRALLVEPRVLFLDEPTSSV 173 RR R+ E F P ++S G ++ +L ++L PT + Sbjct: 372 RRSRLEDLFRRLVERFRLVARSPWTPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGL 431 Query: 174 DPAVCERMIQRLRKEKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQVIRST 233 D A + L + +G I+ + D L+D + ++ GR+ TG L + Sbjct: 432 DIATTSFVRNLLSELARQGAGILLVSTDLDEILELSDRIYVMSGGRV--TGVLER--SQA 487 Query: 234 NPETIEAL 241 PE + L Sbjct: 488 TPEKLGVL 495 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 78.6 bits (192), Expect = 2e-16 Identities = 70/245 (28%), Positives = 120/245 (48%), Gaps = 33/245 (13%) Query: 8 LEEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGL----KEIEKGRII 63 L + ++GVS L V +G I+G SGSGKSTL + L I GRI+ Sbjct: 16 LTGIVRAVDGVS------LSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRIL 69 Query: 64 FGEEEITRLSHERLLSMR-RQTAFVFQDAALWANM----------SLLQN-LTLPVLQRD 111 + ++ L+ E L R R+ VFQD + + SLL++ L + + Sbjct: 70 YSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLASSGSEAE 129 Query: 112 PSADRQALLRRIERMCEEFLFDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTS 171 A L I R D S+ P Q+S G+R+ + A+ +EP++L DEPT+ Sbjct: 130 SMAGDALELVGIPR--------DRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTT 181 Query: 172 SVDPAVCERMIQRLRK-EKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQVI 230 ++D V +++ ++K ++ +G++++ T+D + A +D + ++ G LVE G V+ Sbjct: 182 ALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDVV 241 Query: 231 RSTNP 235 +NP Sbjct: 242 --SNP 244 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 78.6 bits (192), Expect = 2e-16 Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 10/212 (4%) Query: 17 GVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFGEEEITRLSHER 76 GV LK +T P G+ T ++G +G+GK+TLLK + G+ + KGRI+ E+ Sbjct: 17 GVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPKGPGD 76 Query: 77 LLSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQALLRRIERMCEEFLFDDDL 136 S+R Q+ ++ + ++L + ++ A R+A LR+ M E L Sbjct: 77 --SLRSGIYMASQNPPVYPGIKAYEDLAVTLM----VAGRKAGLRQARTMLAEASEALGL 130 Query: 137 SLRP----SQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRLRKEKGKG 192 ++ P ++ ER+ ++AL + R + LDEPT+ + P RM++ + G Sbjct: 131 NIDPDRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAASG 190 Query: 193 VSIIAATNDPRVCANLADEVIILKEGRLVETG 224 +++ T+ AD ++IL++G V G Sbjct: 191 AAVLLVTHRIGEAMEHADRLVILRKGVKVYEG 222 Score = 47.8 bits (112), Expect = 3e-07 Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 27/192 (14%) Query: 21 LKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFGEEEITRLSHERLLSM 80 L+ LEV +G + G++G+G+ L +V+ GL++ KGRI+ ++TR L+ Sbjct: 270 LRMARLEVRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPP---LAR 326 Query: 81 RRQTAFVFQDA----ALWANMSLLQNLTLPVLQRDPSADRQALL---RRIERMCEEFLFD 133 RR V + AL S+ N+ L + R + R E++ EE + D Sbjct: 327 RRLGLGVIPEERLGHALVPGESIAFNIALSI-----HTARDGFIVDWRYYEKLAEEMIRD 381 Query: 134 DDL-SLRPSQ----ISLGERKIASFMRALLVEPRVLFLDEPTSSVD----PAVCERMIQR 184 + ++ P Q +S G + R L ++PR+L P + +D AV E M R Sbjct: 382 MGIKAVSPRQMVDELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMM--R 439 Query: 185 LRKEKGKGVSII 196 + E+G GV +I Sbjct: 440 MSSERG-GVLVI 450 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 72.8 bits (177), Expect = 9e-15 Identities = 70/243 (28%), Positives = 108/243 (44%), Gaps = 25/243 (10%) Query: 4 SCIRLEEVTATIEGVS-ILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRI 62 S +RL +V G +L+ ++LE P G+T ++ G +G GKST+L+V GL G Sbjct: 2 SVVRLRDVWYRYPGGGWVLRGVSLEAPRGIT-LLAGPTGGGKSTILRVAAGLATRIYGGY 60 Query: 63 IFGEEEITRLSHERLLSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQALLRR 122 + GE E R + V QD L+ +SL L R Sbjct: 61 LRGEVEA-----------RGKPVLVPQDYDLFI-LSLTPREELEYCYEASGLPPWEARRE 108 Query: 123 IERMCEEFLFDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMI 182 R+ EE +D L R S++S GER+ + AL + VL +DEP + DP E +I Sbjct: 109 AVRLAEELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVESLI 168 Query: 183 QRLRKEKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQVIRSTNPETIEALS 242 + LR+ +GV + A + A V ++ +GR + G E +E L+ Sbjct: 169 RLLRRLDVEGV--VVAEHRVHYLLPAASSVYLVYDGRAKQLGP---------GEAVEVLA 217 Query: 243 DVL 245 +L Sbjct: 218 GIL 220 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 72.8 bits (177), Expect = 9e-15 Identities = 69/248 (27%), Positives = 121/248 (48%), Gaps = 30/248 (12%) Query: 18 VSILKEITLEVPEGMTTVIMGLSGSGKSTLLK----VMNGLKEIEKGRIIFG-----EEE 68 V+ L + L+V +G I+G SG GKSTL + ++ IEKG II + Sbjct: 22 VNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNTVD 81 Query: 69 ITRLSHERLLSMRRQ-TAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQALLRRIERMC 127 + RLS + L+ +R + + +FQD + A +S + + V S ++ RR+E++ Sbjct: 82 LVRLSEDELVKIRGKIVSMIFQDPS--AALSPVHKVKKQVTDH-VSGEK----RRVEKIA 134 Query: 128 EEFLFD-------DDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAV--- 177 +E L L P ++S G ++ +L+ PR++ DEPT+++D V Sbjct: 135 QEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQ 194 Query: 178 CERMIQRLRKEKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQVI-RSTNPE 236 +M+ RLR+E +II T++ V A +AD + ++ G +VE + + R +P Sbjct: 195 ILKMLSRLREE--LETTIILITHNLAVAAEIADRIAVMYAGHVVEVADVFSLFERPLHPY 252 Query: 237 TIEALSDV 244 T L + Sbjct: 253 TKGLLKSI 260 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 72.4 bits (176), Expect = 1e-14 Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 10/222 (4%) Query: 17 GVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFGEEEITRLSHER 76 G + + ++ V +G IMG +GSGK+TLL++++G+ G + ++ + Sbjct: 16 GRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVCGYDVWG---DG 72 Query: 77 LLSMRRQTAFVFQDAALWANMSLLQNLTLP--VLQRDPSADRQALLRRIERMCEEFLFDD 134 R F QD + M+ + +T+ +L P R R R+ E F+D Sbjct: 73 WREARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVAR----REARRVLEMLGFED 128 Query: 135 DLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRLRKEKGKGVS 194 L +++S G+R+ AL P V+ LDEP S +D E + LRK KG + Sbjct: 129 VLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASLRK-AFKGRT 187 Query: 195 IIAATNDPRVCANLADEVIILKEGRLVETGSLSQVIRSTNPE 236 ++ +++DP+ +D V+I+ GRL G ++I+ P+ Sbjct: 188 VLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPRELIQRYAPK 229 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 71.2 bits (173), Expect = 3e-14 Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 10/238 (4%) Query: 14 TIEG-VSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLK----EIEKGRIIFGEEE 68 T+ G V + ++ + G I G SGSGKSTL + GL I GRI+ + Sbjct: 17 TLRGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMD 76 Query: 69 ITRLSHERLLSMRR--QTAFVFQDAA-LWANMSLLQNLTLPVLQRDPSADRQALLRRIER 125 +T +S L R + + VFQ A + + + VLQ R +R+ Sbjct: 77 VTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYE 136 Query: 126 MCEEFLFDDDLSLR-PSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQR 184 + E ++ R P ++S G+++ AL +EP ++ DEPT+++D V +++ Sbjct: 137 LLESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNL 196 Query: 185 LRK-EKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQVIRSTNPETIEAL 241 L+K K +SII T+D V A LA+ V+I+ G++ E G V +AL Sbjct: 197 LKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEYGPSDAVFTKPQHPYTQAL 254 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 70.1 bits (170), Expect = 6e-14 Identities = 67/263 (25%), Positives = 119/263 (45%), Gaps = 25/263 (9%) Query: 11 VTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFGEEEIT 70 V G +L + LEV G ++G +G+GK+TL+KV GL + GR++ + Sbjct: 10 VVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVL-----LN 64 Query: 71 RLSHERLLSMRRQTAFVFQDAALWANMSLLQNL--TLPVLQRDPSADRQALLRRIERMCE 128 L R R VF+ L ++M +++ L ++ PS R++ Sbjct: 65 GLDPWREPRAREGVGVVFERPNLPSSMPVVEFLESAAAIIGSSPS--------RVDWAIR 116 Query: 129 EFLFDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRL-RK 187 + Q+S G ++ A+ ALL EPR L DEPTS++DP +++ L R Sbjct: 117 AAGLEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARL 176 Query: 188 EKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQV--------IRSTNPE-TI 238 + G+S++ +++ +A + +L GRL GS + +R++NP Sbjct: 177 NREHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDLFRRAGLARLRTSNPSLAA 236 Query: 239 EALSDVLSQAASYDMDILSLLDG 261 E L + +A + ++ +DG Sbjct: 237 ELLRSLGFEAREDGLGVVVRVDG 259 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 69.3 bits (168), Expect = 1e-13 Identities = 57/250 (22%), Positives = 111/250 (44%), Gaps = 34/250 (13%) Query: 18 VSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIF------------- 64 V + ++ + G ++G SG GK+T K + L + GR+ F Sbjct: 47 VKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERR 106 Query: 65 -------GEEEITRLSHERLLSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDP----- 112 G ++ + + +RR+ V+QD SL T+ + DP Sbjct: 107 GVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPY----GSLNPRFTIKRILEDPLLIHS 162 Query: 113 ---SADRQALLRRIERMCEEFLFDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEP 169 + +R+ ++ R+ + D + P Q+S G+R+ + RA ++ P ++ DEP Sbjct: 163 IGNAREREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEP 222 Query: 170 TSSVDPAVCERMIQRLRKEKGK-GVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQ 228 S +D ++ +++ L + K G S++ T+D V + D + ++ G++VETG + Sbjct: 223 VSMLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDARR 282 Query: 229 VI-RSTNPET 237 +I R +P T Sbjct: 283 IIERPIHPYT 292 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 68.9 bits (167), Expect = 1e-13 Identities = 67/257 (26%), Positives = 124/257 (48%), Gaps = 41/257 (15%) Query: 18 VSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLK---------EIEKGRI-----I 63 V + ++L + +G ++G SGSGK+TL K + GL +I+KG + I Sbjct: 27 VKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELEEAVSI 86 Query: 64 F-----GE----EEITR------------LSHERLLSMRRQTAFVFQD--AALWANMSLL 100 + GE E+I R + RR+ V QD ++L M + Sbjct: 87 YEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMKVG 146 Query: 101 QNLTLPVLQRDPSADRQALLRRIERMCEEFLFDDDLSLR-PSQISLGERKIASFMRALLV 159 + + PV + + RR+ + E + + R P ++S G+R+ + RAL + Sbjct: 147 EIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIARALAL 206 Query: 160 EPRVLFLDEPTSSVDPAVCERMIQRLRK-EKGKGVSIIAATNDPRVCANLADEVIILKEG 218 P++L LDEPTS++D ++ ++++ LR+ K G++ + T+D V ++ V+++ G Sbjct: 207 NPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMYSG 266 Query: 219 RLVETGSLSQVIRSTNP 235 +++E S + I TNP Sbjct: 267 KIME--SAPKHILFTNP 281 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 67.8 bits (164), Expect = 3e-13 Identities = 59/232 (25%), Positives = 113/232 (48%), Gaps = 20/232 (8%) Query: 9 EEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFGEEE 68 E +T GV+ L +++EV G I+G +G+GK++LL V+ G+ + ++GR+ F + Sbjct: 5 ENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRD 64 Query: 69 ITRLS-HERL-LSMRRQTAFVFQDAALWANMSLLQNLTL--------PVLQRDPSADRQA 118 IT L H+R+ L + R FQ + L+ +M++L+N+ + +L++ A R Sbjct: 65 ITGLKPHQRITLGLSR----TFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAK 120 Query: 119 LLRRIERMCEEFLFD--DDLSLRPSQISL---GERKIASFMRALLVEPRVLFLDEPTSSV 173 R E + D D R S I G +K AL P V+ +DEP + + Sbjct: 121 RWEVEARERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGL 180 Query: 174 DPAVCERMIQR-LRKEKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETG 224 E +++ + + +++ +D V ++ D V+++ G+++ G Sbjct: 181 SKEEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEG 232 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 64.3 bits (155), Expect = 3e-12 Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 29/217 (13%) Query: 21 LKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFGEEEITRLSHERLLSM 80 L+++TL +P G+T I+G +GSGK+TLLK+ L + ++G + G + L Sbjct: 7 LRDVTLSIPRGVTA-ILGANGSGKTTLLKLAARLLKPDRGSVE-GPRRVGAALQNPYLGF 64 Query: 81 RRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQALLRRIERMCEEFLFDDDLSLRP 140 T V +D A A R L+ + E+ + P Sbjct: 65 LGPT--VAEDLARTAG------------------GRGEALKLLREAGLEYASERS----P 100 Query: 141 SQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRLRKEKGKGVSIIAATN 200 +S+GE +I S + A+ P + +DEPTS +D + + + + GV ++ A + Sbjct: 101 YTLSMGEARILSVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLIAR---LGVPVLVAGH 157 Query: 201 DPRVCANLADEVIILKEGRLVETGSLSQVIRSTNPET 237 D A +A +IL++GR+ +G + +V+R ET Sbjct: 158 DIDFAAAVAGWAVILRDGRVRVSGDMERVLRMLPEET 194 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 64.3 bits (155), Expect = 3e-12 Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 21/244 (8%) Query: 1 MRRSCIRLEEVTATIE-GVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEK 59 MR +RLE V A +L+ ++ + G ++G +GSGK+TLL+++ G+ + + Sbjct: 1 MRPCSVRLEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSR 60 Query: 60 GRIIFGEEEITRLSHERLLSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQAL 119 GR+ E+ R+ RR + + + ++ + +L R ++ A Sbjct: 61 GRV-----EVCGSPPGRV---RRMLGYAPASPEVDPRLKAVE---VALLYRYGVSEGVAW 109 Query: 120 LRR----IERMCEEFLFDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDP 175 RR + E + R ++S G+R++ L P + LDEP S +D Sbjct: 110 GRRDWEEVLAALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDV 169 Query: 176 AVCERMIQRLRKEKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQVIRSTNP 235 + R+ LR +G+ +I+ T+DP + A AD VI+L+EG L G V+ P Sbjct: 170 SNMRRVTLVLRSLRGR-ATIVYTTHDP-LAAMAADSVIMLREGLLHAQGPPEAVV---TP 224 Query: 236 ETIE 239 ETIE Sbjct: 225 ETIE 228 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 63.5 bits (153), Expect = 5e-12 Identities = 53/213 (24%), Positives = 104/213 (48%), Gaps = 17/213 (7%) Query: 24 ITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFGEEEITRLSHERLLSMRRQ 83 ++L V +G ++G +G+GK+T L ++GL + G II+ +IT L + Sbjct: 25 VSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIWQGRDITGL--PAFKRVEEG 82 Query: 84 TAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQALLRRIERMCEEFLFDDDLSLRPSQ- 142 + V + ++ +++ +NL + R Q L ++ + L R SQ Sbjct: 83 ISHVPEGRGIFPRLTVYENLRVAASTRRAKEHFQDSLEQV------YTIFPILKARRSQL 136 Query: 143 ---ISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMI---QRLRKEKGKGVSII 196 +S GE+++ + RAL+ P +L +DEP+ + P + +I RLR+E GV+I+ Sbjct: 137 AGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLASRLREE--LGVTIL 194 Query: 197 AATNDPRVCANLADEVIILKEGRLVETGSLSQV 229 + + +AD +++ GR+V G+ ++ Sbjct: 195 LVEQNVGLSLKVADRGYVMETGRIVLEGASDEL 227 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 63.5 bits (153), Expect = 5e-12 Identities = 58/231 (25%), Positives = 112/231 (48%), Gaps = 17/231 (7%) Query: 6 IRLEEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFG 65 +R+E++T G +L + LE I+G +G+GK+T LK + GL + +GR+ Sbjct: 3 VRVEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLD 62 Query: 66 EEEITRLSHERLLSMRRQTAFVFQD--AALWANMSLLQNLTLPVLQRDPSADRQALLRRI 123 E T R + R +V Q+ A + M++ + + + R + R+ R + Sbjct: 63 GFEAT----GRPEMVGRYAGYVPQNPSAPKLSPMTVREFVETSLRLRGVTRARE---RAV 115 Query: 124 ERMCEEFLFDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPA---VCER 180 E + + + L R ++S+G + RA+ +P++L +DEP +SVDPA R Sbjct: 116 EVLHTLGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIAR 175 Query: 181 MIQRLRKEKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQVIR 231 +I L +E+ ++ ++DP + D ++++ L+ +G +V R Sbjct: 176 IIAGLARER----LVLMTSHDPSLLLGHTDIIVVINRD-LIASGPPEEVYR 221 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 62.8 bits (151), Expect = 9e-12 Identities = 53/208 (25%), Positives = 100/208 (48%), Gaps = 7/208 (3%) Query: 18 VSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFGEEEITRLSHERL 77 + L + L+V G ++G +G+GK+TL+K+++ L + G ++ R ++ Sbjct: 26 IRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREAN--- 82 Query: 78 LSMRRQTAFVFQ-DAALWANMSLLQNLTLPVLQRDPSADRQALLRRIERMCEEFLFDDDL 136 ++R + V + AL+ +S NL Q R+A RR++ + E ++ Sbjct: 83 -NVRSRIGVVLGGERALYWRLSGWDNLWF-FSQLYGIPPREAK-RRVKELLEIVGLEEWA 139 Query: 137 SLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRLRKEKGKGVSII 196 +R S G ++ R L+ +P VL LDEPT +DP + +R+ +G +++ Sbjct: 140 HVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVL 199 Query: 197 AATNDPRVCANLADEVIILKEGRLVETG 224 T+ L+D V I+ +GR+V G Sbjct: 200 LTTHYMVEAEELSDRVAIISKGRIVAEG 227 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 59.3 bits (142), Expect = 1e-10 Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 8/231 (3%) Query: 9 EEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFGEEE 68 EE+ G + ++ + G ++G +G+GK+T +K+++ L G Sbjct: 10 EELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWIAGYS 69 Query: 69 ITRLSHERLLSMRRQTAFVFQDAALWANMSLLQNLTLPV-LQRDPSADRQALLRRIERMC 127 I R ++RR V QD MS N+ + L PS++ + R + Sbjct: 70 IVREPG----NVRRVIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEAR---ERTREVL 122 Query: 128 EEFLFDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRLRK 187 + + R + S G R+ +L+ P+VLFLDEPT +D + + + Sbjct: 123 DYLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIED 182 Query: 188 EKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQVIRSTNPETI 238 K V+I+ T+ L+D V I+ GR+V G+ ++ ET+ Sbjct: 183 LKRSAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEELKARVKGETV 233 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 57.8 bits (138), Expect = 3e-10 Identities = 59/231 (25%), Positives = 111/231 (48%), Gaps = 16/231 (6%) Query: 6 IRLEEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNG--LKEIEKGRII 63 + ++ +TA I +L ++ ++ G +MG +GSGKS+L V+ G + E+ +G I+ Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 64 FGEEEITRLS-HERLLS---MRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQAL 119 E I L ER L M +Q L + + N L AD + + Sbjct: 63 LDGESIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPK-I 121 Query: 120 LRRIERMCEEFLFDDDLSLRPSQISL--GERKIASFMRALLVEPRVLFLDEPTSSVD--- 174 ++R+ + D ++ R + GE+K + ++A++ +P+++ LDEP S +D Sbjct: 122 VKRMYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDG 181 Query: 175 PAVCERMIQRLRKEKGKGVSIIAATNDPRVCANL-ADEVIILKEGRLVETG 224 + I++LR + G+GV +I T+ R+ + D V +L G ++ G Sbjct: 182 LKIVAEFIKQLR-DSGRGVMLI--THYARLLNFVEPDRVTVLYRGSVLARG 229 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 56.2 bits (134), Expect = 8e-10 Identities = 54/242 (22%), Positives = 106/242 (43%), Gaps = 12/242 (4%) Query: 6 IRLEEVTATIEGVSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRI-IF 64 I +E + V L+ ++ V G +G +G+GK+T ++V+ G G +F Sbjct: 5 IEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARVF 64 Query: 65 GEEEITRLSHERLLSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQALLRRIE 124 G E L + +RR+ +V + + +S L R + ++R + Sbjct: 65 GVE----LYNPGASGVRRRVGYVPGEFEFYGGVS--GGRMLDYWCRLVGGCSRGVVRELL 118 Query: 125 RMCEEFLFDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQR 184 F L S G +++ + + A EP ++ +DEPT+ +DP R++ Sbjct: 119 EA-----FPLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDF 173 Query: 185 LRKEKGKGVSIIAATNDPRVCANLADEVIILKEGRLVETGSLSQVIRSTNPETIEALSDV 244 +R + +GV++ +++ +AD V +L+ G LV +S ++R + +S Sbjct: 174 VRSKAREGVTVFFSSHVLSEVQRVADRVGLLRSGVLVALEDVSSLLRKSGKVVKARVSKN 233 Query: 245 LS 246 LS Sbjct: 234 LS 235 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 55.1 bits (131), Expect = 2e-09 Identities = 53/216 (24%), Positives = 100/216 (46%), Gaps = 7/216 (3%) Query: 18 VSILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFGEEEITRLSHERL 77 V LK ++ V EG +G +G+GK+T +++++ L + + G ++ + ER Sbjct: 25 VEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAGFDVVK---ERW 81 Query: 78 LSMRRQTAFVFQDAALWANMSLLQNLTLPVLQRDPSADRQALLRRIERMCEEF-LFDDDL 136 +R + + + ++ +NL R + L RI+ + + L D Sbjct: 82 EVRKRIGVMLSVERGFYWKLTGRENLYY--FGRIYGIPQGELKSRIKEVLDLVGLTDLGG 139 Query: 137 SLRP-SQISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRLRKEKGKGVSI 195 + +P ++SLG + R LL +P VL LDEPT +DPA + +R +G +I Sbjct: 140 ADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSLASEGRTI 199 Query: 196 IAATNDPRVCANLADEVIILKEGRLVETGSLSQVIR 231 T++ ++D V I+ GR+ G+ ++ R Sbjct: 200 FITTHNMVEAEMISDRVGIIIGGRIAMEGTPDELKR 235 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 54.7 bits (130), Expect = 2e-09 Identities = 49/200 (24%), Positives = 94/200 (47%), Gaps = 19/200 (9%) Query: 20 ILKEITLEVPEGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIFGEEEITRLSHERLLS 79 +LK++ + V G ++G SG+GK+TLL+++ G K I GE ++ + Sbjct: 455 VLKDVNITVNPGSVAAVVGASGAGKTTLLRMILG-----KALGIGGEGYRPDSGVVKIPT 509 Query: 80 MRRQTAFVFQDAA-LWANMSLLQNLTLPVLQRDPSADRQALLRRIERMCEEFLFDDDLSL 138 + A + + + +LL+++ + DP A + L D + Sbjct: 510 NTKAAALLPGELEPSFGGETLLEHVASKL--GDPGAAVEVL--------SSVGLGDAIFF 559 Query: 139 RPS--QISLGERKIASFMRALLVEPRVLFLDEPTSSVDPAVCERMIQRLRK-EKGKGVSI 195 R S ++S G+++ A L P +L +DE + +DP R+ ++L K + KG+++ Sbjct: 560 RASFGELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLTARRIARKLGKLARSKGITL 619 Query: 196 IAATNDPRVCANLADEVIIL 215 I +TN P + L + +IL Sbjct: 620 IVSTNRPEILDALQPDTVIL 639 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 53.9 bits (128), Expect = 4e-09 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 9/187 (4%) Query: 36 IMGLSGSGKSTLLKVMNGLKEIEKGRIIFGEEEITRLSHERLLSMRRQTAFV--FQDAAL 93 ++G +G+GK+TLLK + GL + G I+ E+LL + +V L Sbjct: 34 VLGPNGAGKTTLLKTILGLVKPSAGEILVEGVNPRSPGFEKLLP---RIGYVPELPVVPL 90 Query: 94 WANMSLLQNLTLPVLQRDPSADRQALLRRIERMCEEFLFDDDLSLRPSQISLGERKIASF 153 W +L TL L+ S + + R E + ++S G RK Sbjct: 91 WTTPCILLE-TLARLEGYTSVEARV---RAREALEVVGLAGECETPIGKLSKGARKRVLV 146 Query: 154 MRALLVEPRVLFLDEPTSSVDPAVCERMIQRLRKEKGKGVSIIAATNDPRVCANLADEVI 213 +A + E +L LDEP S +DP R+ + LR +G ++I +++ R ++A V+ Sbjct: 147 AQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAREGATVIVSSHILRELEDIATHVL 206 Query: 214 ILKEGRL 220 +LK +L Sbjct: 207 VLKTDQL 213 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 47.4 bits (111), Expect = 4e-07 Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 18/221 (8%) Query: 6 IRLEEVTATIEGVSILKEITLEVP-EGMTTVIMGLSGSGKSTLLKVMNGLKEIEKGRIIF 64 + LEE GV+ K L +P EG ++G +G+GK+T L+++ G + GR+ Sbjct: 80 MELEEEAVHRYGVNGFKLFRLPIPREGQVVGLLGRNGTGKTTALRILAGELKPNLGRVEG 139 Query: 65 GEEEITRLSHERLLSMRRQTAF-VFQDAALWANMSL---------LQNLTLPVLQRDPSA 114 GE E + +R QT F D L + L+ +L+R + Sbjct: 140 GEPEWDEIL-KRFRGSELQTYFRKLVDGKLRVAHKIQYVELVPRRLKGRVRDLLKR--AD 196 Query: 115 DRQALLRRIERMCEEFLFDDDLSLRPSQISLGERKIASFMRALLVEPRVLFLDEPTSSVD 174 +R L E++ + +FD D+ Q+S GE + + L + V DEP+S +D Sbjct: 197 ERGVALELAEQVGLDKVFDRDV----RQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLD 252 Query: 175 PAVCERMIQRLRKEKGKGVSIIAATNDPRVCANLADEVIIL 215 RM + + G ++ +D V ++D V IL Sbjct: 253 IRERMRMARLIAGAARPGAYVMVVEHDLAVLDYVSDLVHIL 293 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 254,419 Number of Sequences: 1700 Number of extensions: 10298 Number of successful extensions: 164 Number of sequences better than 1.0e-04: 40 Number of HSP's better than 0.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 71 Number of HSP's gapped (non-prelim): 50 length of query: 270 length of database: 492,079 effective HSP length: 75 effective length of query: 195 effective length of database: 364,579 effective search space: 71092905 effective search space used: 71092905 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718422|ref|YP_003873954.1| transporter [Spirochaeta thermophila DSM 6192] (263 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.144 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 229,312 Number of Sequences: 1700 Number of extensions: 9068 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 263 length of database: 492,079 effective HSP length: 75 effective length of query: 188 effective length of database: 364,579 effective search space: 68540852 effective search space used: 68540852 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718423|ref|YP_003873955.1| hypothetical protein STHERM_c07240 [Spirochaeta thermophila DSM 6192] (283 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430872|ref|NP_146951.2| hypothetical protein APE_0085.1 [A... 56 9e-10 >gi|118430872|ref|NP_146951.2| hypothetical protein APE_0085.1 [Aeropyrum pernix K1] Length = 219 Score = 56.2 bits (134), Expect = 9e-10 Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%) Query: 1 MRLDLHTHSTASDGALSPSLLIKEAARLGIGLLALTDHDTTSGLEEASRAAR-EEGISFI 59 M ++LH+H+T SDG +P ++K AA+ G+ +A+TDHDT G A RAA+ G++ I Sbjct: 1 MLVELHSHTTVSDGFQTPMEIVKIAAKAGLAAIAVTDHDTFRGSSLAKRAAKLLGGVAVI 60 Query: 60 PGIEM 64 P E+ Sbjct: 61 PAAEV 65 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 275,328 Number of Sequences: 1700 Number of extensions: 12106 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 1 length of query: 283 length of database: 492,079 effective HSP length: 76 effective length of query: 207 effective length of database: 362,879 effective search space: 75115953 effective search space used: 75115953 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718424|ref|YP_003873956.1| cyclic nucleotide-binding protein [Spirochaeta thermophila DSM 6192] (325 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.133 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 303,825 Number of Sequences: 1700 Number of extensions: 12583 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 325 length of database: 492,079 effective HSP length: 77 effective length of query: 248 effective length of database: 361,179 effective search space: 89572392 effective search space used: 89572392 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718425|ref|YP_003873957.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (215 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 206,686 Number of Sequences: 1700 Number of extensions: 8540 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 215 length of database: 492,079 effective HSP length: 73 effective length of query: 142 effective length of database: 367,979 effective search space: 52253018 effective search space used: 52253018 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718426|ref|YP_003873958.1| ubiquinone biosynthesis protein [Spirochaeta thermophila DSM 6192] (550 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.143 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 525,910 Number of Sequences: 1700 Number of extensions: 23783 Number of successful extensions: 93 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93 Number of HSP's gapped (non-prelim): 0 length of query: 550 length of database: 492,079 effective HSP length: 81 effective length of query: 469 effective length of database: 354,379 effective search space: 166203751 effective search space used: 166203751 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718427|ref|YP_003873959.1| flagellar hook-basal body complex protein [Spirochaeta thermophila DSM 6192] (280 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 292,595 Number of Sequences: 1700 Number of extensions: 13983 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 280 length of database: 492,079 effective HSP length: 76 effective length of query: 204 effective length of database: 362,879 effective search space: 74027316 effective search space used: 74027316 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718428|ref|YP_003873960.1| flagellar basal-body rod protein [Spirochaeta thermophila DSM 6192] (264 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 225,034 Number of Sequences: 1700 Number of extensions: 9637 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 264 length of database: 492,079 effective HSP length: 75 effective length of query: 189 effective length of database: 364,579 effective search space: 68905431 effective search space used: 68905431 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718429|ref|YP_003873961.1| hypothetical protein STHERM_c07310 [Spirochaeta thermophila DSM 6192] (95 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,196 Number of Sequences: 1700 Number of extensions: 3924 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 95 length of database: 492,079 effective HSP length: 63 effective length of query: 32 effective length of database: 384,979 effective search space: 12319328 effective search space used: 12319328 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718430|ref|YP_003873962.1| RNA polymerase sigma factor [Spirochaeta thermophila DSM 6192] (281 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 261,380 Number of Sequences: 1700 Number of extensions: 10820 Number of successful extensions: 48 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48 Number of HSP's gapped (non-prelim): 0 length of query: 281 length of database: 492,079 effective HSP length: 76 effective length of query: 205 effective length of database: 362,879 effective search space: 74390195 effective search space used: 74390195 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718431|ref|YP_003873963.1| hypothetical protein STHERM_c07330 [Spirochaeta thermophila DSM 6192] (271 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 253,998 Number of Sequences: 1700 Number of extensions: 11623 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 271 length of database: 492,079 effective HSP length: 75 effective length of query: 196 effective length of database: 364,579 effective search space: 71457484 effective search space used: 71457484 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718432|ref|YP_003873964.1| hypothetical protein STHERM_c07340 [Spirochaeta thermophila DSM 6192] (338 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601201|ref|NP_147734.1| DNA-binding/iron metalloprotein/AP ... 94 6e-21 >gi|14601201|ref|NP_147734.1| DNA-binding/iron metalloprotein/AP endonuclease [Aeropyrum pernix K1] Length = 349 Score = 93.6 bits (231), Expect = 6e-21 Identities = 93/313 (29%), Positives = 142/313 (45%), Gaps = 27/313 (8%) Query: 3 IVGIETSCDECGVAVVEDGRRILSNVVATQIEFHKPYSGVVPEIASRKHVEWIEDVYLKA 62 ++GIE++ GV +V I+ V + + G++P + + +A Sbjct: 11 VLGIESTAHTFGVGIVSTRPPIVRADVRRR--WTPREGGILPREVAEFFSLHAGEAVAEA 68 Query: 63 LDEAGVAQESLDAVAVVNRPGLVGALVVGVSFAKALAYGLGKPLVAVDHIKAHLYAPLME 122 L EAGV+ +DAVAV PG+ AL VG + A+AL+ GKPLV V+H AH+ A Sbjct: 69 LGEAGVSIADVDAVAVALGPGMGPALRVGATVARALSAKYGKPLVPVNHAVAHVEAARFT 128 Query: 123 FDIPYPFLGLLLSGGHTVIAEVQGYDEFRVLGTTIDDACGEAFDKVAKHYGWGYP---GG 179 + P + G TV++ V G +R G T+D A G D A+ G P GG Sbjct: 129 TGLRDPVALYVAGGNTTVVSFVAG--RYRTFGETLDIALGNLLDTFAREAGIAPPYVAGG 186 Query: 180 V-VIDRLARKGNPEACAFPD--PSLHKGRHRYDVSYSGLKTAAIHQLDQFWNPEYPRTDE 236 + +DR A G F + P + KG+ DVS+SG+ TAA+ L + Sbjct: 187 LHAVDRCAEGG-----GFVEGIPYVVKGQ---DVSFSGILTAALRLLKR------GARLS 232 Query: 237 NLAAAFQKAAIDMILRRLELAVEDTXXXXXXXXXXXAANSYL--RNALGARTDWDVFFP- 293 ++ ++ A ++ E + T AAN L + +L A V+ P Sbjct: 233 DVCYTLREVAFSSVVEVTERCLAHTGKRQATLTGGVAANRVLNEKMSLMAGLHGAVYRPV 292 Query: 294 SLPLCGDNGAMVA 306 + L GDNG M+A Sbjct: 293 DVRLSGDNGVMIA 305 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 366,531 Number of Sequences: 1700 Number of extensions: 17103 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 1 length of query: 338 length of database: 492,079 effective HSP length: 77 effective length of query: 261 effective length of database: 361,179 effective search space: 94267719 effective search space used: 94267719 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718433|ref|YP_003873965.1| hypothetical protein STHERM_c07350 [Spirochaeta thermophila DSM 6192] (175 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.144 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 189,583 Number of Sequences: 1700 Number of extensions: 8171 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 0 length of query: 175 length of database: 492,079 effective HSP length: 71 effective length of query: 104 effective length of database: 371,379 effective search space: 38623416 effective search space used: 38623416 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718434|ref|YP_003873966.1| carbamoyl-phosphate synthase small subunit [Spirochaeta thermophila DSM 6192] (388 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602143|ref|NP_148691.1| anthranilate synthase component II ... 79 1e-16 >gi|14602143|ref|NP_148691.1| anthranilate synthase component II [Aeropyrum pernix K1] Length = 196 Score = 79.3 bits (194), Expect = 1e-16 Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 13/141 (9%) Query: 238 LKPEFDAVLFSNGPGDPAVLTEQ---IDLARSLIGKKPLFGVCLGHQIISLAFGAKTYKM 294 LKP D ++ S GPG+P + D+ R + P+ G+CLGHQII L +GAK + Sbjct: 46 LKP--DRIVISPGPGNPLNPRDSGRAPDIVREMARNTPVLGICLGHQIIGLLYGAKVERA 103 Query: 295 KFGHHGINNPVRD------EFTRRVFVTSQNHGFAVDEETLPDDLLVWFRNANDATVEGV 348 HG +PV RVF + H AV + P++L V + +D + G+ Sbjct: 104 PKPMHGKTSPVEHYGHKLYRGVPRVFQAMRYHSLAVYDP--PEELQVDSVSLDDKVIMGI 161 Query: 349 AHKDLPVKASQFHPEAGPGPH 369 +H +LPV QFHPE+ PH Sbjct: 162 SHAELPVYGVQFHPESIGTPH 182 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 435,020 Number of Sequences: 1700 Number of extensions: 20709 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 1 length of query: 388 length of database: 492,079 effective HSP length: 79 effective length of query: 309 effective length of database: 357,779 effective search space: 110553711 effective search space used: 110553711 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718435|ref|YP_003873967.1| carbamoyl-phosphate synthase large subunit [Spirochaeta thermophila DSM 6192] (1071 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,090,871 Number of Sequences: 1700 Number of extensions: 51533 Number of successful extensions: 214 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 214 Number of HSP's gapped (non-prelim): 0 length of query: 1071 length of database: 492,079 effective HSP length: 87 effective length of query: 984 effective length of database: 344,179 effective search space: 338672136 effective search space used: 338672136 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718436|ref|YP_003873968.1| hypothetical protein STHERM_c07440 [Spirochaeta thermophila DSM 6192] (628 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 696,505 Number of Sequences: 1700 Number of extensions: 33029 Number of successful extensions: 98 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98 Number of HSP's gapped (non-prelim): 0 length of query: 628 length of database: 492,079 effective HSP length: 82 effective length of query: 546 effective length of database: 352,679 effective search space: 192562734 effective search space used: 192562734 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718437|ref|YP_003873969.1| penicillin-binding protein [Spirochaeta thermophila DSM 6192] (617 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 670,948 Number of Sequences: 1700 Number of extensions: 32007 Number of successful extensions: 106 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106 Number of HSP's gapped (non-prelim): 0 length of query: 617 length of database: 492,079 effective HSP length: 82 effective length of query: 535 effective length of database: 352,679 effective search space: 188683265 effective search space used: 188683265 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718438|ref|YP_003873970.1| hypothetical protein STHERM_c07460 [Spirochaeta thermophila DSM 6192] (373 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 417,683 Number of Sequences: 1700 Number of extensions: 20201 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 0 length of query: 373 length of database: 492,079 effective HSP length: 78 effective length of query: 295 effective length of database: 359,479 effective search space: 106046305 effective search space used: 106046305 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718439|ref|YP_003873971.1| hypothetical protein STHERM_c07470 [Spirochaeta thermophila DSM 6192] (44 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.305 0.114 0.293 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,073 Number of Sequences: 1700 Number of extensions: 200 Number of successful extensions: 0 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 44 length of database: 492,079 effective HSP length: 17 effective length of query: 27 effective length of database: 463,179 effective search space: 12505833 effective search space used: 12505833 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718440|ref|YP_003873972.1| protein translocase subunit SecA [Spirochaeta thermophila DSM 6192] (905 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 877,255 Number of Sequences: 1700 Number of extensions: 39499 Number of successful extensions: 133 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133 Number of HSP's gapped (non-prelim): 0 length of query: 905 length of database: 492,079 effective HSP length: 85 effective length of query: 820 effective length of database: 347,579 effective search space: 285014780 effective search space used: 285014780 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718441|ref|YP_003873973.1| lipoprotein [Spirochaeta thermophila DSM 6192] (409 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 465,337 Number of Sequences: 1700 Number of extensions: 22553 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 0 length of query: 409 length of database: 492,079 effective HSP length: 79 effective length of query: 330 effective length of database: 357,779 effective search space: 118067070 effective search space used: 118067070 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718442|ref|YP_003873974.1| hypothetical protein STHERM_c07500 [Spirochaeta thermophila DSM 6192] (167 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 119,795 Number of Sequences: 1700 Number of extensions: 4328 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 167 length of database: 492,079 effective HSP length: 71 effective length of query: 96 effective length of database: 371,379 effective search space: 35652384 effective search space used: 35652384 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718443|ref|YP_003873975.1| hypothetical protein STHERM_c07510 [Spirochaeta thermophila DSM 6192] (349 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431849|ref|NP_148566.2| hypothetical protein APE_2362.1 [A... 86 1e-18 >gi|118431849|ref|NP_148566.2| hypothetical protein APE_2362.1 [Aeropyrum pernix K1] Length = 499 Score = 86.3 bits (212), Expect = 1e-18 Identities = 93/297 (31%), Positives = 115/297 (38%), Gaps = 26/297 (8%) Query: 11 GGARVFSVDVPGGV------GCEGGVRADVTAMVGVGKWEVLVPAWRERAGELRVVPIGF 64 GG ++ SVDVP GV EG VR+D T + K + A AGE+ IG Sbjct: 164 GGLKI-SVDVPTGVDPDTGDAVEGAVRSDYTVSMHKPKKGLFKGAAPLYAGEVLTAEIGV 222 Query: 65 PPEVVREEAEGWWLEPGDVGGLVGRVRAASHKGERGRVGVWXXXXXXXXXXXXXXXXXXX 124 P A ++ PGDV + R +HKG GRV V Sbjct: 223 P------WAAEYYAGPGDVAARIPRRPRDAHKGVGGRVLVVGGSSEYVGAPILAALAAYA 276 Query: 125 TPAGLVYLCC--DEEVYXXXXXXXXXXXXRPGDEGVRVDAAVVGPGWG-RGEERVGQ-LA 180 LVYL E RV A V GPG G GE+ + + L Sbjct: 277 AGVDLVYLASPFSREAALARPEIVPRRMEEASRVVERVHAVVAGPGMGGEGEDLLWEVLD 336 Query: 181 AILGRCGRGVIDADGLEXXXXXXXXXXXXXXXXXWVLTPHPGECARLAGCTVEEVLDAPG 240 A R V+DADGL+ VLTPH GE L G E++ P Sbjct: 337 AARKRGVPAVVDADGLKALARRGDRLWGGA-----VLTPHRGEAKLLLGG--EDL--PPL 387 Query: 241 RVCGELARGLGAVVVLKAHTTWVVGPSGRVWVYDGMCAPLGTGGAGDVLAGVIGGLL 297 R E+A GA ++KA V P GR + GG GDVLAGV+ G L Sbjct: 388 RAAREIAARYGATTIVKAPVDAVCSPEGRCRESPWGAPEMSVGGTGDVLAGVLAGFL 444 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.145 0.477 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 408,857 Number of Sequences: 1700 Number of extensions: 19438 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 2 length of query: 349 length of database: 492,079 effective HSP length: 78 effective length of query: 271 effective length of database: 359,479 effective search space: 97418809 effective search space used: 97418809 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718444|ref|YP_003873976.1| hypothetical protein STHERM_c07520 [Spirochaeta thermophila DSM 6192] (184 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 194,141 Number of Sequences: 1700 Number of extensions: 8300 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 184 length of database: 492,079 effective HSP length: 72 effective length of query: 112 effective length of database: 369,679 effective search space: 41404048 effective search space used: 41404048 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718445|ref|YP_003873977.1| hypothetical protein STHERM_c07530 [Spirochaeta thermophila DSM 6192] (143 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.141 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,135 Number of Sequences: 1700 Number of extensions: 2852 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 143 length of database: 492,079 effective HSP length: 69 effective length of query: 74 effective length of database: 374,779 effective search space: 27733646 effective search space used: 27733646 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718446|ref|YP_003873978.1| hypothetical protein STHERM_c07540 [Spirochaeta thermophila DSM 6192] (131 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.142 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 134,413 Number of Sequences: 1700 Number of extensions: 4924 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 131 length of database: 492,079 effective HSP length: 68 effective length of query: 63 effective length of database: 376,479 effective search space: 23718177 effective search space used: 23718177 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718447|ref|YP_003873979.1| glucose-1-phosphate adenylyltransferase [Spirochaeta thermophila DSM 6192] (424 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430955|ref|NP_147084.2| sugar-phosphate nucleotidyl transf... 60 1e-10 gi|14601231|ref|NP_147764.1| glucose-1-phosphate thymidylyltrans... 46 2e-06 >gi|118430955|ref|NP_147084.2| sugar-phosphate nucleotidyl transferase [Aeropyrum pernix K1] Length = 250 Score = 60.1 bits (144), Expect = 1e-10 Identities = 62/259 (23%), Positives = 103/259 (39%), Gaps = 39/259 (15%) Query: 7 IILGGGKGTRLYPLTKERSKPAVPFAARYRIVDIPLSNSINSGFRKVYVLTQFNSASLHL 66 +IL GGKG R P T KP +P + PL + K+ L + L + Sbjct: 8 LILAGGKGRRFRPYTDLIPKPMIPLGRSEK----PLLEYVV----KMLALQGVENIVLLV 59 Query: 67 HLAQAYQFDSFSRGFVEILAAEQGFS-HAGWYEGTADAVRKNLHHFRTQNPSHYLILSGD 125 Y ++ F RG E L + +S Y GT +V K L R + +L+ GD Sbjct: 60 GYKWRYIYNYFGRG--EKLGVKIDYSIDDERYSGTGGSVLKALEEGRVSDED-FLVWYGD 116 Query: 126 QLYRMDLREFFRFHVERDADITLAVTPVRREDIGRYGIIVSNESYRVKAFEEKPDPRGET 185 + + L + H + DA TLAV E Y+V K G Sbjct: 117 IIAEVGLASMYSLHRQHDASATLAVA----------------ERYQVPVGVVKAGREGVI 160 Query: 186 EHLKSSQIVPPSHREQGKHYLASMGIYLFKAEVLEKMMEGPYTDFG--KELIPAAVREYA 243 E ++ + + +G+ +F+ E + EG T F +++P VR+ Sbjct: 161 EDVEEKPWIGVN---------VFIGVAIFRKEAFREAAEGLGTSFDIMGDMMPILVRKSK 211 Query: 244 VYSHVFTGFWVDIGTIRSF 262 ++++ G W D+G++ + Sbjct: 212 AVAYIYDGPWFDVGSLERY 230 >gi|14601231|ref|NP_147764.1| glucose-1-phosphate thymidylyltransferase [Aeropyrum pernix K1] Length = 355 Score = 45.8 bits (107), Expect = 2e-06 Identities = 57/263 (21%), Positives = 107/263 (40%), Gaps = 52/263 (19%) Query: 7 IILGGGKGTRLYPLTKERSKPAVPFAARYRIVDIPLSNSINSGFRKVYVLTQFNSASLHL 66 +IL G+G+RL P T R K +P + I+ + + ++ R + V+ + + Sbjct: 5 LILAAGEGSRLRPFTFSRPKHLIPLLGK-PIIQYAIDDLVSINVRDIGVVVGYFGDKIKE 63 Query: 67 HLAQAYQFDSFSRGFVEILAAEQ-GFSHAGWYEGTADAVRKNLHHFRTQNPSHYLILSGD 125 L + +F + F I+ ++ G +HA + + K +++ GD Sbjct: 64 FLGEDSRFGA---KFTYIVQKKRLGIAHAIYRAIKQGFIDK-----------EFIVYLGD 109 Query: 126 QLYRMDLREFFRFHVERDADITLAVTPVRREDIGRYGIIVSNESYRVKAFEEKPDPRGET 185 + + + E +++ + +T VR D GR+GI V + ++ EKP Sbjct: 110 NILSGGISRHVKSWGEAGSEVHILLTKVR--DPGRFGIAVLRDG-KILKLVEKPQ----- 161 Query: 186 EHLKSSQIVPPSHREQGKHYLASMGIYLFK--------AEVLEKMMEGPY--TDFGKELI 235 EH+ LA +G+Y+F+ L+ G Y TD + + Sbjct: 162 EHISD---------------LAVVGVYMFRDPELVAKAFSTLKPSWRGEYEITDLIQWFV 206 Query: 236 PAAVREYAVYSHVFTGFWVDIGT 258 + Y V + TG+W D+GT Sbjct: 207 D---KGYKVTFSLVTGWWKDVGT 226 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 426,078 Number of Sequences: 1700 Number of extensions: 18795 Number of successful extensions: 48 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 3 length of query: 424 length of database: 492,079 effective HSP length: 79 effective length of query: 345 effective length of database: 357,779 effective search space: 123433755 effective search space used: 123433755 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718448|ref|YP_003873980.1| glycogen synthase [Spirochaeta thermophila DSM 6192] (479 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 513,885 Number of Sequences: 1700 Number of extensions: 25062 Number of successful extensions: 67 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 0 length of query: 479 length of database: 492,079 effective HSP length: 80 effective length of query: 399 effective length of database: 356,079 effective search space: 142075521 effective search space used: 142075521 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718449|ref|YP_003873981.1| hypothetical protein STHERM_c07570 [Spirochaeta thermophila DSM 6192] (277 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 287,258 Number of Sequences: 1700 Number of extensions: 12073 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 277 length of database: 492,079 effective HSP length: 76 effective length of query: 201 effective length of database: 362,879 effective search space: 72938679 effective search space used: 72938679 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718450|ref|YP_003873982.1| hypothetical protein STHERM_c07580 [Spirochaeta thermophila DSM 6192] (560 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 613,378 Number of Sequences: 1700 Number of extensions: 29197 Number of successful extensions: 77 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77 Number of HSP's gapped (non-prelim): 0 length of query: 560 length of database: 492,079 effective HSP length: 82 effective length of query: 478 effective length of database: 352,679 effective search space: 168580562 effective search space used: 168580562 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718451|ref|YP_003873983.1| thioredoxin reductase [Spirochaeta thermophila DSM 6192] (316 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431317|ref|NP_147693.2| thioredoxin reductase [Aeropyrum p... 160 4e-41 gi|118431550|ref|NP_148088.2| dihydrolipoyl dehydrogenase [Aerop... 47 5e-07 gi|14601420|ref|NP_147957.1| mercuric reductase [Aeropyrum perni... 44 7e-06 >gi|118431317|ref|NP_147693.2| thioredoxin reductase [Aeropyrum pernix K1] Length = 337 Score = 160 bits (405), Expect = 4e-41 Identities = 104/313 (33%), Positives = 151/313 (48%), Gaps = 17/313 (5%) Query: 6 DVIIVXXXXXXXXXXXXXXXXXLDTLVIEQMAPGGQALIIDTLENYPGFPEPISGFELAQ 65 D +IV + TL++ M GGQ + + +++YPG + +L + Sbjct: 20 DTVIVGAGPAGLSAAIYTTRFLMSTLIVS-MDVGGQLNLTNWIDDYPGMGG-LEASKLVE 77 Query: 66 RFETQARNFGASFLNA----TVKRISXXXXXXXXXXXXGVLTSYAVILASGAAHRKLGIP 121 F++ A FGA + TV R+ V + VILA G+ RKLG+P Sbjct: 78 SFKSHAEMFGAKIVTGVQVKTVDRLDDGWFLVRGSRGLEV-KARTVILAVGSRRRKLGVP 136 Query: 122 GEKEYTGRGVSYCATCDGPFFKGK-RMLVVGGGDAACDEAMYLSKLTDKIVHIHRRDRFR 180 GE E GRGVSYC+ CD P FKGK ++VVGGGD+A + A+ LS K+ +HRR FR Sbjct: 137 GEAELAGRGVSYCSVCDAPLFKGKDAVVVVGGGDSALEGALLLSGYVGKVYLVHRRQGFR 196 Query: 181 AQKALAQRVLNNPHIEVRFNTVAVEIRGEEVNGXXXXXXXXXXRVDTGETYEEPIDAVFI 240 A+ + P+IE +++ EIRG + TGE E +D +FI Sbjct: 197 AKPFYVEEARKKPNIEFILDSIVTEIRGRD-----RVESVVVKNKVTGEEKELRVDGIFI 251 Query: 241 FIGSDPQTGFVE--GVEKDESGYIITNQEMMSSIPGLFAAGDVRN--TPFRQIXXXXXXX 296 IGS+P E G+E D G ++ ++ M +SIPG+FAAGD + FRQ+ Sbjct: 252 EIGSEPPKELFEAIGLETDSMGNVVVDEWMRTSIPGIFAAGDCTSMWPGFRQVVTAAAMG 311 Query: 297 XXXXXXXXKYIDE 309 Y+ E Sbjct: 312 AVAAYSAYTYLQE 324 >gi|118431550|ref|NP_148088.2| dihydrolipoyl dehydrogenase [Aeropyrum pernix K1] Length = 464 Score = 47.4 bits (111), Expect = 5e-07 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 23/189 (12%) Query: 107 VILASGAAHRKLGIPGEKEYTGRGVSYCATCDGPFFKGKRMLVVGGGDAACDEAMYLSKL 166 ++LA G + IPG E G V T G K RML+VGGG + A +++L Sbjct: 130 LVLALGTS--PASIPG-LEPDGEVVHNNRTILGLRRKPGRMLIVGGGYIGVEYATAMARL 186 Query: 167 TDKIVHIHRRDRF-----RAQKALAQRVLNNPHIEVRFNTVAVEIRGEEVNGXXXXXXXX 221 ++ + DR R + +R L +++ + + E Sbjct: 187 GVEVTIVELLDRLLPNMQRDFSRVVERRLRAEGVKIHTKSKVEAVERRE----------R 236 Query: 222 XXRVDTGETYEEPIDAVFIFIGSDPQTGFVE----GVEKDESGYI-ITNQEMMSSIPGLF 276 V+ + DA+ + +G P TG V GV+ D++GYI + + + +PG++ Sbjct: 237 YAVVEVSGVGKMEYDAILVAVGRRPNTGDVGLEKLGVKLDKAGYIQVDGATLETGVPGVY 296 Query: 277 AAGDVRNTP 285 A+GDV P Sbjct: 297 ASGDVTGPP 305 >gi|14601420|ref|NP_147957.1| mercuric reductase [Aeropyrum pernix K1] Length = 461 Score = 43.5 bits (101), Expect = 7e-06 Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 28/191 (14%) Query: 106 AVILASGAAHRKLGIPGEKEYTGRGV---SYCATCDGPFFKGKRMLVVGGGDAACDEAMY 162 A I+A GA + IPG KE G + +GP + + V+GG + A Sbjct: 125 AAIIAVGARTWRPPIPGLKEAEKAGRILDNERLFGEGPPPDMESVAVIGGRAQGVEAAQI 184 Query: 163 LSKLTDKIVHIHRRDRFRAQK-----ALAQRVLNNPHIEVRFNTVAVEIRGEEVNGXXXX 217 ++ K V + R R + +RVL +EVR T A +R E V G Sbjct: 185 FARSGLKTVLLQRSGRLLPRDEPEAGVYMKRVLEGDGVEVR--TSARPLRVESVRGAV-- 240 Query: 218 XXXXXXRVDTGETYEEP--IDAVFIFI--GSDPQTGFVE----GVEKDESGYIITNQEMM 269 R+D ET + P ++A +I++ G P + GV G+I+ N+++M Sbjct: 241 ------RIDY-ETPQGPASVEASYIYLATGRKPVLDGLGLENVGVRVSSDGFIVVNEKLM 293 Query: 270 SSIPGLFAAGD 280 +S PG++AAGD Sbjct: 294 AS-PGVYAAGD 303 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 271,736 Number of Sequences: 1700 Number of extensions: 10351 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 3 length of query: 316 length of database: 492,079 effective HSP length: 77 effective length of query: 239 effective length of database: 361,179 effective search space: 86321781 effective search space used: 86321781 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718452|ref|YP_003873984.1| hypothetical protein STHERM_c07600 [Spirochaeta thermophila DSM 6192] (40 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.149 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,959 Number of Sequences: 1700 Number of extensions: 1023 Number of successful extensions: 2 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 40 length of database: 492,079 effective HSP length: 14 effective length of query: 26 effective length of database: 468,279 effective search space: 12175254 effective search space used: 12175254 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718453|ref|YP_003873985.1| hypothetical protein STHERM_c07610 [Spirochaeta thermophila DSM 6192] (163 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 141,463 Number of Sequences: 1700 Number of extensions: 4885 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 163 length of database: 492,079 effective HSP length: 70 effective length of query: 93 effective length of database: 373,079 effective search space: 34696347 effective search space used: 34696347 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718454|ref|YP_003873986.1| flagellar hook-associated protein [Spirochaeta thermophila DSM 6192] (624 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 625,358 Number of Sequences: 1700 Number of extensions: 28717 Number of successful extensions: 85 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85 Number of HSP's gapped (non-prelim): 0 length of query: 624 length of database: 492,079 effective HSP length: 82 effective length of query: 542 effective length of database: 352,679 effective search space: 191152018 effective search space used: 191152018 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718455|ref|YP_003873987.1| hypothetical protein STHERM_c07630 [Spirochaeta thermophila DSM 6192] (415 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 424,944 Number of Sequences: 1700 Number of extensions: 19549 Number of successful extensions: 68 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 0 length of query: 415 length of database: 492,079 effective HSP length: 79 effective length of query: 336 effective length of database: 357,779 effective search space: 120213744 effective search space used: 120213744 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718456|ref|YP_003873988.1| flagellar assembly factor FliW [Spirochaeta thermophila DSM 6192] (147 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 151,467 Number of Sequences: 1700 Number of extensions: 6056 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 147 length of database: 492,079 effective HSP length: 69 effective length of query: 78 effective length of database: 374,779 effective search space: 29232762 effective search space used: 29232762 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718457|ref|YP_003873989.1| carbon storage regulator [Spirochaeta thermophila DSM 6192] (77 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.136 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,857 Number of Sequences: 1700 Number of extensions: 2445 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 77 length of database: 492,079 effective HSP length: 47 effective length of query: 30 effective length of database: 412,179 effective search space: 12365370 effective search space used: 12365370 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718458|ref|YP_003873990.1| peptidase M22, glycoprotease [Spirochaeta thermophila DSM 6192] (224 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 228,207 Number of Sequences: 1700 Number of extensions: 10239 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 224 length of database: 492,079 effective HSP length: 74 effective length of query: 150 effective length of database: 366,279 effective search space: 54941850 effective search space used: 54941850 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718459|ref|YP_003873991.1| hypothetical protein STHERM_c07670 [Spirochaeta thermophila DSM 6192] (126 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 153,008 Number of Sequences: 1700 Number of extensions: 7759 Number of successful extensions: 65 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65 Number of HSP's gapped (non-prelim): 0 length of query: 126 length of database: 492,079 effective HSP length: 67 effective length of query: 59 effective length of database: 378,179 effective search space: 22312561 effective search space used: 22312561 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718460|ref|YP_003873992.1| hypothetical protein STHERM_c07680 [Spirochaeta thermophila DSM 6192] (88 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,146 Number of Sequences: 1700 Number of extensions: 3638 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 88 length of database: 492,079 effective HSP length: 57 effective length of query: 31 effective length of database: 395,179 effective search space: 12250549 effective search space used: 12250549 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718461|ref|YP_003873993.1| hypothetical protein STHERM_c07690 [Spirochaeta thermophila DSM 6192] (369 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 379,456 Number of Sequences: 1700 Number of extensions: 17066 Number of successful extensions: 67 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 0 length of query: 369 length of database: 492,079 effective HSP length: 78 effective length of query: 291 effective length of database: 359,479 effective search space: 104608389 effective search space used: 104608389 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718462|ref|YP_003873994.1| hypothetical protein STHERM_c07700 [Spirochaeta thermophila DSM 6192] (292 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 250,352 Number of Sequences: 1700 Number of extensions: 9565 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 292 length of database: 492,079 effective HSP length: 76 effective length of query: 216 effective length of database: 362,879 effective search space: 78381864 effective search space used: 78381864 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718463|ref|YP_003873995.1| flagellar hook-associated protein 2 [Spirochaeta thermophila DSM 6192] (671 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.133 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 595,452 Number of Sequences: 1700 Number of extensions: 24475 Number of successful extensions: 78 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78 Number of HSP's gapped (non-prelim): 0 length of query: 671 length of database: 492,079 effective HSP length: 83 effective length of query: 588 effective length of database: 350,979 effective search space: 206375652 effective search space used: 206375652 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718464|ref|YP_003873996.1| hypothetical protein STHERM_c07720 [Spirochaeta thermophila DSM 6192] (109 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.132 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,041 Number of Sequences: 1700 Number of extensions: 3764 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 109 length of database: 492,079 effective HSP length: 65 effective length of query: 44 effective length of database: 381,579 effective search space: 16789476 effective search space used: 16789476 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718465|ref|YP_003873997.1| flagellar filament 41 kDa core protein [Spirochaeta thermophila DSM 6192] (282 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.127 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 190,810 Number of Sequences: 1700 Number of extensions: 6360 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 282 length of database: 492,079 effective HSP length: 76 effective length of query: 206 effective length of database: 362,879 effective search space: 74753074 effective search space used: 74753074 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718466|ref|YP_003873998.1| flagellar filament 33 kDa core protein, class B [Spirochaeta thermophila DSM 6192] (285 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.129 0.342 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 204,198 Number of Sequences: 1700 Number of extensions: 7304 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 285 length of database: 492,079 effective HSP length: 76 effective length of query: 209 effective length of database: 362,879 effective search space: 75841711 effective search space used: 75841711 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718467|ref|YP_003873999.1| hypothetical protein STHERM_c07750 [Spirochaeta thermophila DSM 6192] (374 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 397,111 Number of Sequences: 1700 Number of extensions: 18203 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 0 length of query: 374 length of database: 492,079 effective HSP length: 78 effective length of query: 296 effective length of database: 359,479 effective search space: 106405784 effective search space used: 106405784 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718468|ref|YP_003874000.1| hypothetical protein STHERM_c07760 [Spirochaeta thermophila DSM 6192] (274 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 241,279 Number of Sequences: 1700 Number of extensions: 9826 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 274 length of database: 492,079 effective HSP length: 76 effective length of query: 198 effective length of database: 362,879 effective search space: 71850042 effective search space used: 71850042 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718469|ref|YP_003874001.1| hypothetical protein STHERM_c07770 [Spirochaeta thermophila DSM 6192] (94 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,835 Number of Sequences: 1700 Number of extensions: 2949 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 94 length of database: 492,079 effective HSP length: 62 effective length of query: 32 effective length of database: 386,679 effective search space: 12373728 effective search space used: 12373728 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718470|ref|YP_003874002.1| hypothetical protein STHERM_c07780 [Spirochaeta thermophila DSM 6192] (131 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.311 0.132 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,645 Number of Sequences: 1700 Number of extensions: 3169 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 131 length of database: 492,079 effective HSP length: 68 effective length of query: 63 effective length of database: 376,479 effective search space: 23718177 effective search space used: 23718177 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718471|ref|YP_003874003.1| 50S ribosomal protein L20 [Spirochaeta thermophila DSM 6192] (119 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,805 Number of Sequences: 1700 Number of extensions: 2822 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 119 length of database: 492,079 effective HSP length: 66 effective length of query: 53 effective length of database: 379,879 effective search space: 20133587 effective search space used: 20133587 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718472|ref|YP_003874004.1| 50S ribosomal protein L35 [Spirochaeta thermophila DSM 6192] (65 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.132 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,823 Number of Sequences: 1700 Number of extensions: 1429 Number of successful extensions: 4 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 65 length of database: 492,079 effective HSP length: 37 effective length of query: 28 effective length of database: 429,179 effective search space: 12017012 effective search space used: 12017012 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718473|ref|YP_003874005.1| translation initiation factor IF-3 [Spirochaeta thermophila DSM 6192] (172 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 153,039 Number of Sequences: 1700 Number of extensions: 6062 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 172 length of database: 492,079 effective HSP length: 71 effective length of query: 101 effective length of database: 371,379 effective search space: 37509279 effective search space used: 37509279 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718474|ref|YP_003874006.1| hypothetical protein STHERM_c07820 [Spirochaeta thermophila DSM 6192] (209 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.145 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 222,088 Number of Sequences: 1700 Number of extensions: 10204 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 209 length of database: 492,079 effective HSP length: 73 effective length of query: 136 effective length of database: 367,979 effective search space: 50045144 effective search space used: 50045144 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718475|ref|YP_003874007.1| homoserine O-acetyltransferase [Spirochaeta thermophila DSM 6192] (392 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 433,632 Number of Sequences: 1700 Number of extensions: 19749 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 392 length of database: 492,079 effective HSP length: 79 effective length of query: 313 effective length of database: 357,779 effective search space: 111984827 effective search space used: 111984827 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718476|ref|YP_003874008.1| hypothetical protein STHERM_c07840 [Spirochaeta thermophila DSM 6192] (232 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.144 0.501 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 205,907 Number of Sequences: 1700 Number of extensions: 7114 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 232 length of database: 492,079 effective HSP length: 74 effective length of query: 158 effective length of database: 366,279 effective search space: 57872082 effective search space used: 57872082 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718477|ref|YP_003874009.1| fructose-bisphosphate aldolase [Spirochaeta thermophila DSM 6192] (330 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 338,020 Number of Sequences: 1700 Number of extensions: 14787 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 0 length of query: 330 length of database: 492,079 effective HSP length: 77 effective length of query: 253 effective length of database: 361,179 effective search space: 91378287 effective search space used: 91378287 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718478|ref|YP_003874010.1| hypothetical protein STHERM_c07860 [Spirochaeta thermophila DSM 6192] (268 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.141 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 293,707 Number of Sequences: 1700 Number of extensions: 13910 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 268 length of database: 492,079 effective HSP length: 75 effective length of query: 193 effective length of database: 364,579 effective search space: 70363747 effective search space used: 70363747 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718479|ref|YP_003874011.1| flagellar filament outer layer protein FlaA [Spirochaeta thermophila DSM 6192] (311 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 305,973 Number of Sequences: 1700 Number of extensions: 12723 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 311 length of database: 492,079 effective HSP length: 77 effective length of query: 234 effective length of database: 361,179 effective search space: 84515886 effective search space used: 84515886 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718480|ref|YP_003874012.1| flagellar filament outer layer protein FlaA [Spirochaeta thermophila DSM 6192] (234 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 246,817 Number of Sequences: 1700 Number of extensions: 11288 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 0 length of query: 234 length of database: 492,079 effective HSP length: 74 effective length of query: 160 effective length of database: 366,279 effective search space: 58604640 effective search space used: 58604640 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718481|ref|YP_003874013.1| hypothetical protein STHERM_c07890 [Spirochaeta thermophila DSM 6192] (267 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 316,117 Number of Sequences: 1700 Number of extensions: 14712 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61 Number of HSP's gapped (non-prelim): 0 length of query: 267 length of database: 492,079 effective HSP length: 75 effective length of query: 192 effective length of database: 364,579 effective search space: 69999168 effective search space used: 69999168 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718482|ref|YP_003874014.1| hypothetical protein STHERM_c07900 [Spirochaeta thermophila DSM 6192] (135 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 136,687 Number of Sequences: 1700 Number of extensions: 5477 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 135 length of database: 492,079 effective HSP length: 68 effective length of query: 67 effective length of database: 376,479 effective search space: 25224093 effective search space used: 25224093 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718483|ref|YP_003874015.1| hypothetical protein STHERM_c07910 [Spirochaeta thermophila DSM 6192] (237 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.137 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 221,255 Number of Sequences: 1700 Number of extensions: 8477 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 237 length of database: 492,079 effective HSP length: 74 effective length of query: 163 effective length of database: 366,279 effective search space: 59703477 effective search space used: 59703477 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718484|ref|YP_003874016.1| hypothetical protein STHERM_c07930 [Spirochaeta thermophila DSM 6192] (232 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.142 0.472 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 296,061 Number of Sequences: 1700 Number of extensions: 13645 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 232 length of database: 492,079 effective HSP length: 74 effective length of query: 158 effective length of database: 366,279 effective search space: 57872082 effective search space used: 57872082 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718485|ref|YP_003874017.1| hypothetical protein STHERM_c07940 [Spirochaeta thermophila DSM 6192] (665 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 639,377 Number of Sequences: 1700 Number of extensions: 27977 Number of successful extensions: 81 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81 Number of HSP's gapped (non-prelim): 0 length of query: 665 length of database: 492,079 effective HSP length: 83 effective length of query: 582 effective length of database: 350,979 effective search space: 204269778 effective search space used: 204269778 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718486|ref|YP_003874018.1| small multidrug export protein QacE [Spirochaeta thermophila DSM 6192] (156 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601151|ref|NP_147679.1| hypothetical protein APE_1041 [Aero... 49 6e-08 >gi|14601151|ref|NP_147679.1| hypothetical protein APE_1041 [Aeropyrum pernix K1] Length = 143 Score = 48.9 bits (115), Expect = 6e-08 Identities = 21/34 (61%), Positives = 27/34 (79%) Query: 87 VERYGMWGLMVFVAVPLPVTGAYTGTLGAWILGL 120 VERYG GL+VF+A+PLP TG Y+G L A +LG+ Sbjct: 78 VERYGWAGLIVFIAIPLPATGMYSGALAAALLGI 111 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.147 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 113,588 Number of Sequences: 1700 Number of extensions: 3854 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 1 length of query: 156 length of database: 492,079 effective HSP length: 70 effective length of query: 86 effective length of database: 373,079 effective search space: 32084794 effective search space used: 32084794 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718487|ref|YP_003874019.1| hypothetical protein STHERM_c07960 [Spirochaeta thermophila DSM 6192] (426 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600412|ref|NP_146926.1| hypothetical protein APE_0055 [Aero... 71 6e-14 >gi|14600412|ref|NP_146926.1| hypothetical protein APE_0055 [Aeropyrum pernix K1] Length = 430 Score = 70.9 bits (172), Expect = 6e-14 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 12/150 (8%) Query: 278 WGTIFFFIGLFIMVGGLVEVGAIERLSQAVLSLTGGNIRSTSLLLLWVSGLFSAIVDNIP 337 W + F+ LF +VGGL G IE +++ ++ + ++ W GL S ++++ Sbjct: 283 WRALLFYAALFSLVGGLESEGVIEEIARLLVGSVSSDPAIAYTVMYWSVGLLSLVIEHDA 342 Query: 338 YVATMIPLIEHMGETLGHPAIQP--LWWSLALGACLGGNGTLVGASANVVSAGIAGRSGY 395 + T + +++ G I P ++W +A A L N T A A V+ ++ R G+ Sbjct: 343 LLLTFLYIVKDAASLAG---IDPWNIYWGMAWSATLASNATTAAAPALYVAVAMSDREGH 399 Query: 396 RISFLEFTKYGALVTGVSLLFSTLYIILRY 425 R+ LEF KY SL F+ +I+ Y Sbjct: 400 RVRALEFLKY-------SLTFAFTSLIIHY 422 Score = 68.6 bits (166), Expect = 3e-13 Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 11/193 (5%) Query: 8 ALILFVVIYVLISLEKINKTIXXXXXXXXXXXXXXXTQEVAFLEHIDWNVILLLVSMMII 67 A +LF + +L+ +++ T E AF ++WNVI +L+ M II Sbjct: 5 AALLFTLTIMLVVSRYVDEVAAALAGVTALILLTNYTPEEAF-NFVEWNVIAILLGMWII 63 Query: 68 VGITKESGLFQYVALKTAKLTRGNPVLILILFALITAGFSALLDNXXXXXXXXXXXXXXX 127 G E G F ++ + G L+ AL++ S +DN Sbjct: 64 AGYMIEGG-FTEATIRLVSRSAGTYRKFLLYMALLSGFISMFIDNVLVILLVGSLTIAAA 122 Query: 128 XELGISPIPFVISDALASNIGGTATLIGDPPNIMIGSAAGLSFMDFLVN---------LT 178 + G +P+ ++ ++N GTA L+GD P ++ + AG F+DF+ LT Sbjct: 123 KKAGGNPVLAILLVGFSANFMGTALLMGDLPPQLLHTIAGAEFLDFIWTRGKPSSFPLLT 182 Query: 179 PFILFFLGVYALL 191 L LGV+ +L Sbjct: 183 ATFLLTLGVFYIL 195 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.144 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 348,397 Number of Sequences: 1700 Number of extensions: 13183 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63 Number of HSP's gapped (non-prelim): 4 length of query: 426 length of database: 492,079 effective HSP length: 79 effective length of query: 347 effective length of database: 357,779 effective search space: 124149313 effective search space used: 124149313 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718488|ref|YP_003874020.1| hypothetical protein STHERM_c07970 [Spirochaeta thermophila DSM 6192] (297 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431769|ref|NP_148440.2| hypothetical protein APE_2178.1 [A... 56 1e-09 gi|118431896|ref|NP_148644.2| hypothetical protein APE_2489.1 [A... 43 8e-06 >gi|118431769|ref|NP_148440.2| hypothetical protein APE_2178.1 [Aeropyrum pernix K1] Length = 280 Score = 55.8 bits (133), Expect = 1e-09 Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 13/151 (8%) Query: 146 DVEIKKGLLVRDIMNPSIISVSPEDTIKDVVDLFVKHHTSYLPVINASGRFVGEIRMFDV 205 D+EI + VRD+M ++SV+ + I V L ++ S +PV++ GRFVG Sbjct: 137 DLEISQDTSVRDVMRTFLVSVNLQTRILHVRQLLYEYDISVIPVMD-EGRFVGV------ 189 Query: 206 LHIGLPQYTTMLGNLSFLSSFEPFEEL-LKNEDRILVKEVMKQPHPVCTPQTTVIELSFE 264 +GL + ++ + L+ EP LK ++V + ++ PV TP ++ E + + Sbjct: 190 --VGLDELMAIIKSFYNLARGEPKRHTPLK---YVIVADAIRMRPPVVTPDASLAEAAEK 244 Query: 265 MTRTQRRHVAVVEGETLVGVVSFMDILEKVL 295 M + R V VV+ E VG S +++ +L Sbjct: 245 MLEKRYRAVVVVDSEKPVGFTSGLELANFLL 275 >gi|118431896|ref|NP_148644.2| hypothetical protein APE_2489.1 [Aeropyrum pernix K1] Length = 148 Score = 43.1 bits (100), Expect = 8e-06 Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 22/142 (15%) Query: 157 DIMNPSIISVSPEDTIKDVVDLFVKHHTSYLPVINASGRFVGEIRMFDVLHIGLPQYTTM 216 DIM +++V P+D + L V++ + V++ GR G + D++++ Sbjct: 17 DIMITEVVTVKPDDPVTRAAKLMVENLIGSVLVVDDEGRLRGIVTERDIVYV-------- 68 Query: 217 LGNLSFLSSFEPFEELLKNEDRILVKEVMKQPHPVCTPQTTVIELSFEMTRTQRRHVAVV 276 +++P + V E+M + V P ++ + +M+ T RH+ VV Sbjct: 69 -----VSEAWDPTKH--------RVWEIMTENPIVVRPDDDLLTVVRKMSETNVRHLPVV 115 Query: 277 -EGETLVGVVSFMDILEKVLRV 297 E VG++SF D+L+ ++ V Sbjct: 116 DEKGAPVGIISFRDVLDFLMSV 137 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 284,068 Number of Sequences: 1700 Number of extensions: 11902 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 4 length of query: 297 length of database: 492,079 effective HSP length: 76 effective length of query: 221 effective length of database: 362,879 effective search space: 80196259 effective search space used: 80196259 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718489|ref|YP_003874021.1| alanyl-tRNA synthetase AlaRS [Spirochaeta thermophila DSM 6192] (603 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601887|ref|NP_148431.1| alanyl-tRNA synthetase [Aeropyrum p... 102 3e-23 >gi|14601887|ref|NP_148431.1| alanyl-tRNA synthetase [Aeropyrum pernix K1] Length = 900 Score = 102 bits (253), Expect = 3e-23 Identities = 112/470 (23%), Positives = 174/470 (37%), Gaps = 115/470 (24%) Query: 1 MTGKELREKYIRFFKEHGHAEISGFSLIPENDPTVLFTTAGMHPLVPYIL-GAEHPAGKR 59 M+ E RE ++ FF++HGH + ++ + T A + P++ G P Sbjct: 44 MSVGEAREAFLSFFEKHGHTRVPPRPVVARWREDLYLTIASIVVFQPHVTSGLVPPPANP 103 Query: 60 LVDYQRCIRTGDIDSVG--DASHLTFFEMLGNWSLG-----DYFKEEAIRMSYEFLTSPR 112 LV Q IR DID+VG HLT FEM + + Y+KEE +R+++EF T + Sbjct: 104 LVISQPSIRLEDIDNVGITIGRHLTSFEMAAHHAFNYPDRQVYWKEETVRLAFEFFT--Q 161 Query: 113 WLGIDPEKLSVTVFAGDEMVPRDEESAEIWRSLGIPDGRIHFMSREHNWWGPAGKTGPCG 172 LGI PE + VF + +WW G GP Sbjct: 162 VLGIPPE---LIVF-------------------------------KESWWEGGGNAGP-- 185 Query: 173 PDTEMFIDTXXXXXXXXXXXXXXXXXYFEIWNDVFMEYNKKADGSYERLDRRCVDTGMGL 232 E+ VFM+Y + DG YE + + VDTG G+ Sbjct: 186 -------------------SFEVAVGGLELATLVFMKY-RVVDGRYEEIPLKIVDTGYGV 225 Query: 233 ERTTAILQGKQSVYD------------------------------TEFFVP----IIRAI 258 ER Q + + F P +R Sbjct: 226 ERLAWFTQKTPTAFHAIYGSLVDDFRRMLGVEKPDENVMWAAFRVAGFLDPEDPESLRNY 285 Query: 259 EESTGAVYGKDPE-------KDVSIRIISDHIKAATFILGDERGVTPSNVGQGYVXXXXX 311 ++ ++ G D E ++ + + DH K +LGD G+ PSN G+GY+ Sbjct: 286 YQTVASLAGGDVETVRSILTREARLYSVLDHTKTIALMLGD--GIVPSNSGEGYLARLVV 343 Query: 312 XXXXXXXXKLGVEGNFVHLPAQVVLDMYKEYYPLLAEKRDFVLEELRGEEDKFLKTLQKG 371 L E V L + ++ +P L E D++L+ + EE++F L+K Sbjct: 344 RRALRQLSLLNAEVPLVDLVERQARFWMRD-FPQLKENLDYILDAVSLEEERFRDVLRKA 402 Query: 372 EHEFEKMXXXXXXXXXXVIPGRIAFRLYDTYGFPIEVTEELAREHGLTVD 421 E+ + RLYD+ G P E+ E+A G V+ Sbjct: 403 RSIVERELKRKKRLGVDDL-----IRLYDSMGVPPEIAAEIAASRGAPVE 447 Score = 75.1 bits (183), Expect = 5e-15 Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 2/126 (1%) Query: 470 RIVLGPHVQQKGSNITPERLRFDFSHPEKLTPEQIRKVEEIVNQKIKEDLPVTMEVMTLE 529 R VLG H Q G+ T E+ R D +H LT + I K+E +VNQ I+E V +++ Sbjct: 598 RRVLGRHAWQAGAEKTEEKGRLDITHHRPLTRDDIEKLENVVNQVIRERRRVWEDMVDKN 657 Query: 530 EAKEKGAIAFFTD--RYDEKVKVYSVGDFSKEVCGGPHVERTGVLGRFKIVKEQSSSAGV 587 EA+EK + ++++++ V D+ E C G HV TG +G FKI+ GV Sbjct: 658 EAEEKYGFTIYQGGVPMEKRLRLVFVEDWDVEACFGTHVRNTGEIGGFKIISYSRIQDGV 717 Query: 588 RRIRAV 593 R+ V Sbjct: 718 VRLEYV 723 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 594,190 Number of Sequences: 1700 Number of extensions: 25882 Number of successful extensions: 77 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 4 length of query: 603 length of database: 492,079 effective HSP length: 82 effective length of query: 521 effective length of database: 352,679 effective search space: 183745759 effective search space used: 183745759 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718490|ref|YP_003874022.1| radical SAM enzyme, Cfr family [Spirochaeta thermophila DSM 6192] (354 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 342,128 Number of Sequences: 1700 Number of extensions: 14237 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 0 length of query: 354 length of database: 492,079 effective HSP length: 78 effective length of query: 276 effective length of database: 359,479 effective search space: 99216204 effective search space used: 99216204 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718491|ref|YP_003874023.1| hypothetical protein STHERM_c08010 [Spirochaeta thermophila DSM 6192] (382 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 392,163 Number of Sequences: 1700 Number of extensions: 17464 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 382 length of database: 492,079 effective HSP length: 78 effective length of query: 304 effective length of database: 359,479 effective search space: 109281616 effective search space used: 109281616 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718492|ref|YP_003874024.1| hypothetical protein STHERM_c08020 [Spirochaeta thermophila DSM 6192] (129 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 120,016 Number of Sequences: 1700 Number of extensions: 4639 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 129 length of database: 492,079 effective HSP length: 67 effective length of query: 62 effective length of database: 378,179 effective search space: 23447098 effective search space used: 23447098 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718493|ref|YP_003874025.1| imidazoleglycerol-phosphate dehydratase [Spirochaeta thermophila DSM 6192] (195 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 205,973 Number of Sequences: 1700 Number of extensions: 8902 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 195 length of database: 492,079 effective HSP length: 72 effective length of query: 123 effective length of database: 369,679 effective search space: 45470517 effective search space used: 45470517 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718494|ref|YP_003874026.1| ATP phosphoribosyltransferase [Spirochaeta thermophila DSM 6192] (212 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 218,223 Number of Sequences: 1700 Number of extensions: 9597 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 212 length of database: 492,079 effective HSP length: 73 effective length of query: 139 effective length of database: 367,979 effective search space: 51149081 effective search space used: 51149081 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718495|ref|YP_003874027.1| ATP phosphoribosyltransferase regulatory subunit [Spirochaeta thermophila DSM 6192] (364 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431143|ref|NP_147398.2| histidyl-tRNA synthetase [Aeropyru... 64 4e-12 >gi|118431143|ref|NP_147398.2| histidyl-tRNA synthetase [Aeropyrum pernix K1] Length = 435 Score = 64.3 bits (155), Expect = 4e-12 Identities = 73/328 (22%), Positives = 131/328 (39%), Gaps = 14/328 (4%) Query: 21 ARARLQIPRGTEQLLQEEALLHRFVVRTLEDLYLSQGYLPVQTPVFDFFDIYRPLLDPAV 80 A R + PRG E +L + ++ LE ++ S G+ P+ TP ++++ Sbjct: 2 AGGRPRPPRGFRDFPPEVMILRKRLLSRLERVFESYGFDPLDTPAVEYWETLSGKYGEEA 61 Query: 81 QAK-TYRLVDR-EGDILMLRSDITLFLAKQLGTTVAPEDLPLRVFYADTILRHEGQEDIS 138 +++ +R D G LR D+T+ LA+ + + +P + ++ + RHE + Sbjct: 62 ESRLIWRFQDPWSGRWYALRYDLTVPLARFVASNPG-LPMPFKRYHIGKVWRHEEPQKGR 120 Query: 139 HDEYFQAGVXXXXXXXXXXXXXXXTLLAHTLSLFDLPPHTLHIGSKRLFSLAF-SSLPDG 197 + E+ Q +L ++ LP + + +RL + F L Sbjct: 121 YREFVQCDADIVGSPYPEADAEIVSLAVDSIDALGLPGFRVRVNDRRLLAGVFEEELGFD 180 Query: 198 LSSRIAHAIATRDR---SLFTRILTQAGWDERDIENHRRLFWFIGEPGEIPTLTSLVRDL 254 I AI D+ R L + G +E + + G PGE+ L S+ R Sbjct: 181 NPLPIYRAIDKLDKIGVEGVRRELERLGLPGSTVERIMEIISWRGRPGEV--LESVRRGY 238 Query: 255 PTXXXXXXXXXXXXXXXXTSQGVPGSLLRIDLSETGGQDYYTGIAFRVYV-EGADAAVVS 313 + + + +D+S G DYYTG V + E +V Sbjct: 239 GSNEKVREALDHLEEMLSLAD---DKRVELDMSLVRGLDYYTGPILEVVLDEPRIGSVAG 295 Query: 314 GGRYDSLLSYF-GLECPSVGYSLMLRKL 340 GGRYD L+ F G + P+ G S+ + ++ Sbjct: 296 GGRYDGLVGMFAGRDIPATGVSIGIERI 323 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 343,337 Number of Sequences: 1700 Number of extensions: 14230 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 1 length of query: 364 length of database: 492,079 effective HSP length: 78 effective length of query: 286 effective length of database: 359,479 effective search space: 102810994 effective search space used: 102810994 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718496|ref|YP_003874028.1| hypothetical protein STHERM_c08060 [Spirochaeta thermophila DSM 6192] (180 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430899|ref|NP_146994.2| hypothetical protein APE_0141.1 [A... 40 5e-05 >gi|118430899|ref|NP_146994.2| hypothetical protein APE_0141.1 [Aeropyrum pernix K1] Length = 400 Score = 39.7 bits (91), Expect = 5e-05 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%) Query: 43 GRSFLDLFAGSGIMAIEAASRGASPVVCVEKDRRKRPVLERNLRELGI--DGRILIEPAE 100 G S LD+F+ +G I A GAS V +E+D +L +NLR GI + +++ + Sbjct: 220 GDSVLDVFSYTGGFGIHALLSGASKAVFIEEDAHAVKLLRKNLRLNGIQENKALILNTSI 279 Query: 101 HYIRHATSP---FDVIYLDPP 118 A P FD++ +DPP Sbjct: 280 WKAIQAGEPRESFDIVTVDPP 300 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 207,740 Number of Sequences: 1700 Number of extensions: 9318 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 1 length of query: 180 length of database: 492,079 effective HSP length: 71 effective length of query: 109 effective length of database: 371,379 effective search space: 40480311 effective search space used: 40480311 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718497|ref|YP_003874029.1| ATP-dependent DNA helicase RecG [Spirochaeta thermophila DSM 6192] (683 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 637,269 Number of Sequences: 1700 Number of extensions: 27604 Number of successful extensions: 112 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112 Number of HSP's gapped (non-prelim): 0 length of query: 683 length of database: 492,079 effective HSP length: 83 effective length of query: 600 effective length of database: 350,979 effective search space: 210587400 effective search space used: 210587400 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718498|ref|YP_003874030.1| hypothetical protein STHERM_c08080 [Spirochaeta thermophila DSM 6192] (196 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.335 0.148 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 160,951 Number of Sequences: 1700 Number of extensions: 6198 Number of successful extensions: 27 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 0 length of query: 196 length of database: 492,079 effective HSP length: 72 effective length of query: 124 effective length of database: 369,679 effective search space: 45840196 effective search space used: 45840196 T: 11 A: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718499|ref|YP_003874031.1| DNA polymerase III subunit alpha [Spirochaeta thermophila DSM 6192] (1136 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,150,126 Number of Sequences: 1700 Number of extensions: 52833 Number of successful extensions: 176 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 176 Number of HSP's gapped (non-prelim): 0 length of query: 1136 length of database: 492,079 effective HSP length: 87 effective length of query: 1049 effective length of database: 344,179 effective search space: 361043771 effective search space used: 361043771 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718500|ref|YP_003874032.1| xanthine dehydrogenase subunit, FAD-binding domain-containing protein [Spirochaeta thermophila DSM 6192] (284 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 265,336 Number of Sequences: 1700 Number of extensions: 10408 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 284 length of database: 492,079 effective HSP length: 76 effective length of query: 208 effective length of database: 362,879 effective search space: 75478832 effective search space used: 75478832 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718501|ref|YP_003874033.1| hypothetical protein STHERM_c08110 [Spirochaeta thermophila DSM 6192] (161 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601917|ref|NP_148462.1| aldehyde dehydrogenase, small subun... 40 4e-05 >gi|14601917|ref|NP_148462.1| aldehyde dehydrogenase, small subunit [Aeropyrum pernix K1] Length = 163 Score = 39.7 bits (91), Expect = 4e-05 Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 2/122 (1%) Query: 16 VDPLMDLHSFLKSELRITAVKXXXXXXXXXXXXVLIDDVFSLACMVPLFSVQQRRILTIA 75 V P M L FL+ L +T VL++ +C V F V I TI Sbjct: 24 VPPRMLLVHFLRDVLGLTGTHVGCDTSNCGACTVLVNGKAVKSCTVYTFMVDGAEITTIE 83 Query: 76 GFSSTPDYVDLEKGFHAEKVFPCGHCAPSRILLGHSLLVYAEHHQTDPRGMREHVERFPC 135 G +++ F CG C P I+ H L + + +R +E C Sbjct: 84 GLEQNGKLHPIQEAFWENHGLQCGFCTPGMIMTLHDFL--SRNKSPTESEVRRAIEGNLC 141 Query: 136 TC 137 C Sbjct: 142 RC 143 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.141 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 140,065 Number of Sequences: 1700 Number of extensions: 5086 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 1 length of query: 161 length of database: 492,079 effective HSP length: 70 effective length of query: 91 effective length of database: 373,079 effective search space: 33950189 effective search space used: 33950189 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718502|ref|YP_003874034.1| xanthine dehydrogenase, molybdopterin binding subunit [Spirochaeta thermophila DSM 6192] (667 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431161|ref|NP_147434.2| aldehyde dehydrogenase, large subu... 62 3e-11 gi|118431783|ref|NP_148464.2| aldehyde dehydrogenase, large subu... 58 6e-10 >gi|118431161|ref|NP_147434.2| aldehyde dehydrogenase, large subunit [Aeropyrum pernix K1] Length = 764 Score = 62.4 bits (150), Expect = 3e-11 Identities = 135/655 (20%), Positives = 224/655 (34%), Gaps = 100/655 (15%) Query: 9 VLTGGAAHPLDLSFPGMLHVGILRSTRAHAKIKEIQPPQDL--PSTIGIIRAPDLP---R 63 +LTG + D+ GML+ RS HA ++++ L P + DL + Sbjct: 24 LLTGRGRYVDDVRLEGMLYAAFARSEYPHAVVRKVDLSDALKAPGVVAAFSYSDLEGSLK 83 Query: 64 P-TLTILDEEIPLLAEDKVFYEGQPILLVVAPSSREMREILSRIQVTYEELPATVSPEEA 122 P T + LA D+V Y G+P+ +VVA + + + + V YE L V P +A Sbjct: 84 PWTFDAPSSPMYPLARDRVRYYGEPVAVVVASDPYQAADAVELVSVDYEPLEPVVDPLKA 143 Query: 123 L-----------GHQIAHVRTATRGPWEE--EPETEIVQGRILVPSESLPPLREETIVAY 169 + IA+ R + G E+ +V+ + V + L + A Sbjct: 144 MEPGAPRVHDEAERNIAYSRRLSCGDVEKAFREAAVVVEDTLWVARKYAASLEPRGVAAS 203 Query: 170 LADGVLHIATTCPWPSLVRDTVAHVCGKPSSKIHV-------HLFREEHLYDADVLTPLL 222 L + + P RD + P S + V + +Y +V+ P L Sbjct: 204 YDGSTLTVWVSTQTPHDHRDELLEKIVPPPSDVRVIQPDVGGAFGAKIEVYPEEVVVPYL 263 Query: 223 C-----------SAYAAFVTCTTGRPCRLHLSPHEMSRYGSKAPSVLLQYTAWIARNAVR 271 S V T GR R E++ S+ +L I Sbjct: 264 AMRLGRPVKWYPSRREDMVATTHGRDIRA-----ELALAASRDGRILGVRGRIIGDVGAY 318 Query: 272 KVDLLISIDAGYIAPFSREMVDRAFSAILSLYRWKSMRLTIRAVRTNLLPTGFFAGLGDV 331 + + + + AG I P Y +S + + AV TN P + G G Sbjct: 319 PLGIFLPLIAGRILP--------------GPYDIRSGDVEVLAVYTNKTPLAAYRGAGRP 364 Query: 332 PIARAVEDMMNHLALKAGVSPEEWRLTHLRGDPSFDALRTLVREATRKADFP----RKFT 387 +E M++ LA + G+ P E RL ++ P R D+P R Sbjct: 365 EGIFFMERMVDLLADELGMDPAELRLRNM-VKPEAMPYRNCFGWQYDSGDYPGTLKRGLK 423 Query: 388 VERLASKREALPFEPRRGMGLAVAGLWHGFF-SFPERWRRAALSLSLETDGTLVVRSTHL 446 + RL + E R+G + GL + F+ +SLE GT+ + Sbjct: 424 LLRLRELESWVEEERRKG---RLLGLGYAFYVEITSGGPFETAKVSLERGGTVSIVVGST 480 Query: 447 PQHPELREVWTSLIKEYTGISEGKITFSFEGTSDLPAGGPSSMGRNVRLFTGLLVRACRE 506 P + + + G+ ++ + T + G + R + + G ++ A E Sbjct: 481 PTGQGDATGFAQIAADILGVGVERVRVRWGDTGLIGEGVGTFGSRTITVGGGAVIEAVSE 540 Query: 507 LQQKRFRTPLPIHLSVYARGTRVKP--------------------------------TTQ 534 L + R R L V +P Sbjct: 541 LVE-RLRPKAAEMLGVDPGRVEYRPGEFYVVDSPEDFVGLWDVVEQLYRELGEKAGEVLS 599 Query: 535 GYHLLPPSEKAWGVGM--VEVRATPLTPVPRIVKIWLCIDAGRILSPEGLRRTLI 587 Y P + + G+ V P T VPR+V+ D GRI++P L L+ Sbjct: 600 AYAKYDPKKPVYPYGLHAAVVEIDPETGVPRVVEYRALDDVGRIVNPMLLEGQLV 654 >gi|118431783|ref|NP_148464.2| aldehyde dehydrogenase, large subunit [Aeropyrum pernix K1] Length = 785 Score = 58.2 bits (139), Expect = 6e-10 Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 13/127 (10%) Query: 10 LTGGAAHPLDLSFPGMLHVGILRSTRAHAKIKEIQPP--QDLPSTIGIIRAP---DLPRP 64 +TG + D+ PGM++ LR++ AHA+IK I + +P +G+ D P Sbjct: 21 ITGRGLYVDDIKLPGMVYAAFLRASYAHARIKSIDTSKAEKMPGVVGVYTGEYFKDKVAP 80 Query: 65 TLT---ILDEEI-----PLLAEDKVFYEGQPILLVVAPSSREMREILSRIQVTYEELPAT 116 T + + ++ P++A DKV + G + +VVA + L I V YE LP Sbjct: 81 LTTAWALANADLKPVFWPVVAHDKVRFTGDIVAVVVAEDPYTAYDALEAIDVEYEPLPVV 140 Query: 117 VSPEEAL 123 V EEA+ Sbjct: 141 VDVEEAI 147 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 702,021 Number of Sequences: 1700 Number of extensions: 32304 Number of successful extensions: 91 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 86 Number of HSP's gapped (non-prelim): 4 length of query: 667 length of database: 492,079 effective HSP length: 83 effective length of query: 584 effective length of database: 350,979 effective search space: 204971736 effective search space used: 204971736 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718503|ref|YP_003874035.1| spore coat polysaccharide biosynthesis protein C [Spirochaeta thermophila DSM 6192] (397 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 409,390 Number of Sequences: 1700 Number of extensions: 18505 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 397 length of database: 492,079 effective HSP length: 79 effective length of query: 318 effective length of database: 357,779 effective search space: 113773722 effective search space used: 113773722 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718504|ref|YP_003874036.1| capsular polysaccharide biosynthesis protein [Spirochaeta thermophila DSM 6192] (492 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.142 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 505,161 Number of Sequences: 1700 Number of extensions: 23976 Number of successful extensions: 84 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84 Number of HSP's gapped (non-prelim): 0 length of query: 492 length of database: 492,079 effective HSP length: 81 effective length of query: 411 effective length of database: 354,379 effective search space: 145649769 effective search space used: 145649769 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718505|ref|YP_003874037.1| hypothetical protein STHERM_c08140 [Spirochaeta thermophila DSM 6192] (55 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,351 Number of Sequences: 1700 Number of extensions: 1037 Number of successful extensions: 2 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 55 length of database: 492,079 effective HSP length: 27 effective length of query: 28 effective length of database: 446,179 effective search space: 12493012 effective search space used: 12493012 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718506|ref|YP_003874038.1| hypothetical protein STHERM_c08160 [Spirochaeta thermophila DSM 6192] (571 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 311,967 Number of Sequences: 1700 Number of extensions: 10196 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 0 length of query: 571 length of database: 492,079 effective HSP length: 82 effective length of query: 489 effective length of database: 352,679 effective search space: 172460031 effective search space used: 172460031 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718507|ref|YP_003874039.1| DNA ligase [Spirochaeta thermophila DSM 6192] (673 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 731,069 Number of Sequences: 1700 Number of extensions: 35530 Number of successful extensions: 131 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 131 Number of HSP's gapped (non-prelim): 0 length of query: 673 length of database: 492,079 effective HSP length: 83 effective length of query: 590 effective length of database: 350,979 effective search space: 207077610 effective search space used: 207077610 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718508|ref|YP_003874040.1| hydrolytic enzyme [Spirochaeta thermophila DSM 6192] (460 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 430,191 Number of Sequences: 1700 Number of extensions: 16628 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 460 length of database: 492,079 effective HSP length: 80 effective length of query: 380 effective length of database: 356,079 effective search space: 135310020 effective search space used: 135310020 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718509|ref|YP_003874041.1| glycosyl hydrolase family protein [Spirochaeta thermophila DSM 6192] (343 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.136 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 353,490 Number of Sequences: 1700 Number of extensions: 15382 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 0 length of query: 343 length of database: 492,079 effective HSP length: 78 effective length of query: 265 effective length of database: 359,479 effective search space: 95261935 effective search space used: 95261935 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718510|ref|YP_003874042.1| transporter [Spirochaeta thermophila DSM 6192] (282 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 117 3e-28 gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum... 60 6e-11 gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyru... 59 2e-10 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 117 bits (293), Expect = 3e-28 Identities = 75/285 (26%), Positives = 132/285 (46%), Gaps = 11/285 (3%) Query: 7 TRILRSVLTHAVVIL------LGYVMIYPVLWMIASSLKENSEIFASA--SLIPRVPSFE 58 +R LR VL VV++ V + P + + S++ E+ +++ + + Sbjct: 4 SRRLRQVLRVDVVLINLLAWGFALVWLLPFIGLFMVSVRPYGEVIVKGWWNIVDATFTMD 63 Query: 59 AYVRGWKGVGGVSFATFFGNSFFYSTMATVGTLLSSSLVAYXXXXXXXXXXXXXXTCMLL 118 Y++ W S + + NS + ATV + ++S AY +L Sbjct: 64 NYIKAWS-YDPYSVSGGYINSLIVALPATVIPVAAASFAAYGFSRFSFPLKSYLFLVTIL 122 Query: 119 TMMLPYQIVMIPQYILFFKLGWVNTFAPLI-VPTFFGQPFFIFLMIQFIRGIPLELDESA 177 M LP QIV++P ++L LG +NTF +I V + +G + IF M F +P E++E+A Sbjct: 123 LMALPQQIVVVPLFLLLKNLGLINTFPGIILVHSAWGMAWIIFFMKNFFDILPREVEEAA 182 Query: 178 KIDGCSRFTTFRHIIFPLMSPALVTSAIFQFYWKWDDFLGPLLYLNRPVHYTVSLALRMF 237 ++DG S F F I+ P+ P ++++++ QF W W F L++L P + ++ + Sbjct: 183 RVDGASDFRIFYKIVLPMSLPGILSASVLQFTWVWSSFFFELIFLIDPSKWVITQRIANM 242 Query: 238 SDPTTSTDWAAIFAMGTLSLVPIFLIFMFFQRYLVEGITVSGLKG 282 T DW I A ++ ++M QRY + G KG Sbjct: 243 KG-TYLVDWGLIAAGSVFAMAVPLAVYMLLQRYYIRGFVGWAAKG 286 >gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum pernix K1] Length = 270 Score = 60.1 bits (144), Expect = 6e-11 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 11/161 (6%) Query: 116 MLLTMMLPYQIVMIPQYILFFKLGWVNTFAPL-IVPTFFGQPFFIFLMIQFIRGIPLELD 174 ++ T M P ++ + FF LG +T L + T PF + + GIP +L+ Sbjct: 109 IIATRMFPIIVISVSLLKTFFNLGLNDTLIGLALAHTAMALPFVVIITGSIFGGIPRDLE 168 Query: 175 ESAKIDGCSRFTTFRHIIFPLMSPALVTSAIFQFYWKWDD-FLGPLLYL-NRPVHYTVSL 232 E+ I G S F I PL +P L + +F F W++ F+ +L L NR + + Sbjct: 169 EAGMIFGLSSIMVFLRITLPLAAPGLTAAGMFTFLLSWNEVFMASVLTLVNRTL--PAFI 226 Query: 233 ALRMFSDPTTSTDWAAIFAMGTLSLVPIFLIFMFF-QRYLV 272 F+ P +AA F + ++P L+FMF +RYLV Sbjct: 227 LNSAFATPIEPIRFAAAFML----ILPA-LVFMFLARRYLV 262 >gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyrum pernix K1] Length = 302 Score = 58.5 bits (140), Expect = 2e-10 Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 1/127 (0%) Query: 156 PFFIFLMIQFIRGIPLELDESAKIDGCSRFTTFRHIIFPLMSPALVTSAIFQFYWKWDDF 215 P I+L F IP EL+ SA +DG SR + I+ PL+ P + IF F W++F Sbjct: 177 PMAIWLFKGFFDKIPWELEWSALVDGASRVRVWWSILVPLVKPGIAAVLIFTFLAGWEEF 236 Query: 216 LGPLLYLNRPVHYTVSLALRMFSDPTTSTDWAAIFAMGTLSLVPIFLIFMFFQRYLVEGI 275 + ++L ++ + + I A GT L+P + F+ QR L+E Sbjct: 237 IYFYVFLKPFGIDSLPTFIEEIVAAAENYQLTIIAAAGTFYLLPTIVFFVLTQRLLLEAY 296 Query: 276 TVSGLKG 282 + GLKG Sbjct: 297 S-GGLKG 302 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.332 0.144 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 237,623 Number of Sequences: 1700 Number of extensions: 8771 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 3 length of query: 282 length of database: 492,079 effective HSP length: 76 effective length of query: 206 effective length of database: 362,879 effective search space: 74753074 effective search space used: 74753074 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718511|ref|YP_003874043.1| transporter [Spirochaeta thermophila DSM 6192] (309 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 64 4e-12 gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum... 61 4e-11 gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyru... 55 2e-09 gi|14601089|ref|NP_147615.1| spermidine/putrescine ABC transport... 50 9e-08 gi|14601088|ref|NP_147614.1| spermidine/putrescine ABC transport... 40 7e-05 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 64.3 bits (155), Expect = 4e-12 Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 18/173 (10%) Query: 121 IPSLIGGSVAVAVLWRRIFMKD---GIVNMILGSLGIHSEV-SWIGNPRXXXXXXXXXXX 176 IP ++GG + FM D G+V ++ +LG+ +W P+ Sbjct: 121 IPMVVGGLIVR-------FMFDEYVGVVPLVFKALGVDFLAKTWTNYPQLSLLSLILGSV 173 Query: 177 WQF-GSSMLIFLAGLKQIPRSYYEAAHIDGANPFQRFIHITIPQLTPLIFFNLVMQLING 235 W + G S+ ++ A L IP S+ EAA IDGA + F I P + P +VM ++ Sbjct: 174 WLWTGFSLTVYSAALGSIPSSFIEAARIDGAGHWHIFWKIVFPLVRPATIIVVVMTMLWD 233 Query: 236 FTIFTQAYI--VGGPSGDPMNSTLVYALQLYKKAFEFYQMGYASAMAWVLLLI 286 IF Y+ +GGP G S+ V AL +Y+ ASA+A +L L+ Sbjct: 234 LKIFDIVYVATLGGPGG----SSNVLALVMYQYMARALDYQAASAVAVILTLL 282 >gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum pernix K1] Length = 288 Score = 60.8 bits (146), Expect = 4e-11 Identities = 66/290 (22%), Positives = 120/290 (41%), Gaps = 30/290 (10%) Query: 24 YAFISPWLVGFFAFTFFPILASLYFAFTDYDLLSPPVFTGLSNFRA---LLRDDL--FWK 78 + +SP ++ F +PI+ S AF V G +F A LL L FW Sbjct: 15 WLLLSPTILYLAVFIAYPIIDSFRIAF---------VKNGSISFEAVDFLLYSPLSEFWS 65 Query: 79 SLGVTFQYAFVSVPXXXXXXXXXXXXXXXXXXFVGFYRAVYY-IPSLIGGSVAVAVLWRR 137 +L TF A + +P F G +Y + L +A ++W Sbjct: 66 ALKYTFLLAILVIPTETLLALTAVILLFKR--FRGRDAVIYVLVMPLALSDLAAGLIWYS 123 Query: 138 IFMKDGIVNMILGSLGIHSE-VSWIGNPRXXXXXXXXXXXWQFGSSMLIFL---AGLKQI 193 + G +N +L ++G+ S+ + + G + S+ ++F+ AG + I Sbjct: 124 MLTGKGFLNKLLLNMGLISDPIIFFGYENRWLTFLAVYLAEVWRSTAIVFVILFAGAQLI 183 Query: 194 PRSYYEAAHIDGANPFQRFIHITIPQLTPLIFFNLVMQLINGFTIFTQAYIVGGPSGDPM 253 + +EAA + GA+ + + HI IP + P + L+++ + F +F +I+ G Sbjct: 184 NKEVFEAAEVFGASFYVKLRHILIPMIKPSLQAALLIRTLFAFQVFAVVWILAG------ 237 Query: 254 NSTLVYALQLYKKAFEFYQMGYASAMAWVLLLI---IAVFTALIFKSSYL 300 V A + Y E ++ A+ A V+ L+ I V +F+ + L Sbjct: 238 RDIPVLAGEAYYSIVELHKYDVAALYAIVIALLSASIGVVYIRVFRETLL 287 >gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyrum pernix K1] Length = 314 Score = 55.5 bits (132), Expect = 2e-09 Identities = 65/290 (22%), Positives = 118/290 (40%), Gaps = 35/290 (12%) Query: 26 FISPWLVGFFAFTFFPILASLYFAFTDYDLLSPPVF----TGLSNFRALLR----DDLFW 77 F+ P L+ F F P+L ++Y +FT+ + + GL N++ L+ D +F Sbjct: 12 FLGPALLIVITFFFLPLLLTVYTSFTNMRNWNVDAYLFDIVGLYNYKVLVHFAKYDPMFR 71 Query: 78 KSLGVTFQYAFVSVPXXXXXXXXXXXXXXXXXXFVGF-YRAVYYIPSLIGGSVAVAVLWR 136 +L T + V++ + YR ++ +P + +V ++LW Sbjct: 72 NALITTVVFVAVTLVVNVLGGLTLAILTFFLEERISIHYRLLWLLPRMTPVAV-YSLLWY 130 Query: 137 RIFMKD--GIVNMILGSLGIHSEVSWIGNPRXXXXXXXXXXXW------------QFGSS 182 F D G +N IL G+ I P W FG Sbjct: 131 YFFHSDAIGTLNRILLLAGV------IDKPINWGSYMLPLGTWWILIFVNGLVGVSFG-- 182 Query: 183 MLIFLAGLKQIPRSYYEAAHIDGANPFQRFIHITIPQLTPLIFFNLVMQLINGFTIFTQA 242 M++F + ++ IP Y AA +DGA+ I +P + + F V Q+++ T +T Sbjct: 183 MIVFYSAIRSIPWEYIAAARVDGASNLVIIRRIIVPMIRWHLLFVTVWQMLSLLTTYTHI 242 Query: 243 YIVGGPSGDPMNSTLVYALQLYKKAF---EFYQMGYASAMAWVLLLIIAV 289 +++ ++L ++ AF + G A+A A VL++I A+ Sbjct: 243 FLLYEWGVVDRTWGQTWSLLVFNLAFLPVGELRQGLAAAAATVLVVIGAI 292 >gi|14601089|ref|NP_147615.1| spermidine/putrescine ABC transporter permease [Aeropyrum pernix K1] Length = 257 Score = 49.7 bits (117), Expect = 9e-08 Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 8/181 (4%) Query: 119 YYIPSLIGGSVAVAVLWRRIFMKDGIVNMILGSLGIHSEVSWIGNPRXXXXXXXXXXXWQ 178 YYI GG + +L +F+ IV+++L +L I ++ +G Sbjct: 82 YYIALEAGGRERIVLL--ALFVSPFIVDVLLRTLSIKLVLTLVGVKPGWTATFIGLVYEN 139 Query: 179 FGSSMLIFLAGLKQIPRSYYEAAHIDGANPFQRFIHITIPQLTPLIFFNLVMQLINGFTI 238 +L AG+ + RS EAA GA + + + P P + V+ + FT Sbjct: 140 LPLGILFAFAGVSGVSRSLVEAARTLGAGRLEVYRSVVAPLALPWLAAGFVVVFLISFTD 199 Query: 239 FTQAYIVGGPSGDPMNSTLVYALQLYKKAFEFYQMGYASAMAWVLLLIIAVFTALIFKSS 298 + ++GG +G + S L+Y L L ++ SA+ ++ L+ A L+F+ + Sbjct: 200 YVVPSLLGGTTGFTVGS-LIYHLILSGDRWDL-----GSAVTLMVTLLSAAAAYLVFRQA 253 Query: 299 Y 299 Y Sbjct: 254 Y 254 >gi|14601088|ref|NP_147614.1| spermidine/putrescine ABC transporter permease [Aeropyrum pernix K1] Length = 267 Score = 40.0 bits (92), Expect = 7e-05 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 2/106 (1%) Query: 196 SYYEAAHIDGANPFQRFIHITIPQLTPLIFFNLVMQLINGFTIFTQAYIVGGPSGDPMNS 255 S +AA GA P + + ITIP P I+ + I FT F + GP G Sbjct: 154 SLEDAARTLGATPARTLVTITIPLAAPAIYAGFTLAFILSFTDFIKTLFTRGP-GIETIP 212 Query: 256 TLVYALQLYKKAFEFYQMGYASAMAWVLLLI-IAVFTALIFKSSYL 300 L++ EF Y +A+ VLL + +AV A + S+ L Sbjct: 213 ILLWNRARRPGLSEFSSFSYLAAITMVLLAVSLAVALAYVILSTRL 258 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.144 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 278,203 Number of Sequences: 1700 Number of extensions: 10515 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 5 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 5 length of query: 309 length of database: 492,079 effective HSP length: 77 effective length of query: 232 effective length of database: 361,179 effective search space: 83793528 effective search space used: 83793528 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718512|ref|YP_003874044.1| family 1 extracellular solute-binding protein [Spirochaeta thermophila DSM 6192] (432 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 459,907 Number of Sequences: 1700 Number of extensions: 21396 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 0 length of query: 432 length of database: 492,079 effective HSP length: 79 effective length of query: 353 effective length of database: 357,779 effective search space: 126295987 effective search space used: 126295987 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718513|ref|YP_003874045.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (252 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 246,455 Number of Sequences: 1700 Number of extensions: 10698 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 252 length of database: 492,079 effective HSP length: 75 effective length of query: 177 effective length of database: 364,579 effective search space: 64530483 effective search space used: 64530483 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718514|ref|YP_003874046.1| hypothetical protein STHERM_c08240 [Spirochaeta thermophila DSM 6192] (416 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601549|ref|NP_148089.1| branched-chain alpha-keto acid dehy... 186 7e-49 >gi|14601549|ref|NP_148089.1| branched-chain alpha-keto acid dehydrogenase E2 [Aeropyrum pernix K1] Length = 412 Score = 186 bits (473), Expect = 7e-49 Identities = 133/401 (33%), Positives = 202/401 (50%), Gaps = 19/401 (4%) Query: 4 EVVMPRFGSTVESAVIVEWKVKEGDTVAEDTVLCEVETDKATFEVRAGKSGTVLRLLHAE 63 +V +P G + IVEW V+EG V + + L V T KAT E+ + +G V+RLL Sbjct: 6 QVKLPDIGEGIAEGEIVEWLVEEGAVVKQFSPLVRVLTAKATVEIPSPYTGRVVRLLAKP 65 Query: 64 GEDVPVLSPLALIGEPGEEISSEAVPQEGPSXXXXXXXXXXXXXXXSSVPSRGEGREAGR 123 G+ V V P+ I E+ P+ + ++ P + A Sbjct: 66 GDVVRVGDPIIEI-----EVEEGEAPKAPEAAEKPSATVEPPKAEEAAAPPP-QAAPAIL 119 Query: 124 IYASPRARRLAEKEGVDLSGMRGSGPRGRIMERDVRAVIERRGRGVAPEGGDVRPRPAET 183 + A PR RRLA + GVDL+ +RG+GPRG I E DVR PE P AE Sbjct: 120 VRAPPRVRRLARQLGVDLARVRGTGPRGAITEDDVRRAAAMLATAPKPEAP---PPVAEE 176 Query: 184 GVQGRPLSGIRRVIAQRMRESLSQTAQYTITMRAPARALLSFRRRCKESGDPELSSITIN 243 + P+ GI+R +AQ M S S+ I L R K + + +T Sbjct: 177 AEERIPVRGIKRSMAQSMSLSKSKIPHAYIAEEVDFTELSKLREALKRDAEEKGVRLTYL 236 Query: 244 DLILYAVSRALLPDYPMLNAHYDGTSL--VLHPSVHLGVAVDTERGLVVPVVRDAASLSL 301 + AV++A+ YP++N+ +D + V+ +V++G AVDT GLVVPVV++ L Sbjct: 237 PFVFKAVAKAIRK-YPLVNSEFDEEKMEIVVKKAVNIGFAVDTPHGLVVPVVKNVEKKGL 295 Query: 302 LELSKRVKELSRAALRGDLDPDLMKGSTFTVTNLGPLGVETFTPVLNYPEVAILGVGGIV 361 +++ + +L+ A L + + G+TFT+TN+G +G PV+ P VAILGV +V Sbjct: 296 FAIAREIADLTAKAREMRLSLEEVSGATFTITNVGSIGSVIGFPVIYPPNVAILGVHRLV 355 Query: 362 PTPVYRDGDMEEVVHEPRLV--LSLTCDHQVVDGAPAARFL 400 PVY DG++ +PR + +SL+ DH+ ++GA A RFL Sbjct: 356 ERPVYVDGEL-----KPRKIGFVSLSFDHRALEGAYATRFL 391 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 453,143 Number of Sequences: 1700 Number of extensions: 22442 Number of successful extensions: 75 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71 Number of HSP's gapped (non-prelim): 1 length of query: 416 length of database: 492,079 effective HSP length: 79 effective length of query: 337 effective length of database: 357,779 effective search space: 120571523 effective search space used: 120571523 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718515|ref|YP_003874047.1| dehydrogenase, fusion [Spirochaeta thermophila DSM 6192] (818 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601550|ref|NP_148090.1| pyruvate dehydrogenase E1 subunit b... 167 9e-43 gi|118431551|ref|NP_148091.2| pyruvate dehydrogenase E1 subunit ... 78 7e-16 >gi|14601550|ref|NP_148090.1| pyruvate dehydrogenase E1 subunit beta [Aeropyrum pernix K1] Length = 325 Score = 167 bits (423), Expect = 9e-43 Identities = 110/324 (33%), Positives = 165/324 (50%), Gaps = 7/324 (2%) Query: 470 VFQLRDAIFEALVHRFLEDPTMAAWGEENRDWGGAFGVYRGLTELLPYHRLFNAPISEXX 529 V + A+ AL D ++ GE+ GG F V GL + R+ + P++E Sbjct: 3 VMNMVQALNTALREEMRRDKSVVVLGEDVGRRGGVFLVTEGLIDEFGEERVIDTPLTEMG 62 Query: 530 XXXXXXXXXXXXXRAVVELMYCDFMGRAGDEIFNQMAKWQAMSAGLLRMPLVVRVSV--G 587 R V E+ + DF+ A D+I N A ++ S G+ +PLV+R G Sbjct: 63 IVAFAIGMAMYGLRPVAEIQFIDFIYEAFDQIVNNAAWYRFRSGGMYNVPLVIRGPCCGG 122 Query: 588 NKYGAQHSQEWSSLVAHIPGLKVMFPATPYDAKGMMNLALRGTDPVIFFESQLLYDVGEY 647 + G HSQ H PGL V+ P+TPYDAKG++ ++R D VIF E + +Y Sbjct: 123 IRGGMHHSQSNEPYFIHTPGLYVVMPSTPYDAKGLLKSSIRSDDAVIFLEPKSIYRT--- 179 Query: 648 FVPGGVPEGYYEIPEGQPALRKEGRDLTIATVGASLYKAMEAASVLESRFGVSAEVFDLR 707 + VP+ Y IP GQ L +EG D+T+ T GA ++ A EAA +L + G S E+ DLR Sbjct: 180 -IREEVPDNDYTIPLGQARLVQEGSDVTLVTWGAMVHLAKEAAELLREKRGWSIEIIDLR 238 Query: 708 FIVPLDLEPIVESVKKTGRLLLVSEAVERGSYLHTIASKVQDLAFEYLDAPVVVIGSRNW 767 + P D + +V+S++KTGRL++V EA + IA+ + + + L PV + S + Sbjct: 239 TLQPWDKDMVVKSLEKTGRLVIVHEARKILGPGAEIAAYISENYIDLLRGPVKRVASYDT 298 Query: 768 ITPAAEMESLFFPQVEWILDAVDE 791 P A E L+ P + I AV E Sbjct: 299 PYPLAH-EKLYLPNLAKIYRAVTE 321 >gi|118431551|ref|NP_148091.2| pyruvate dehydrogenase E1 subunit alpha [Aeropyrum pernix K1] Length = 377 Score = 78.2 bits (191), Expect = 7e-16 Identities = 102/432 (23%), Positives = 170/432 (39%), Gaps = 91/432 (21%) Query: 33 DEELARYGKERLLRIYYDMRTIREFESMLDAIKKQGAWEGIKYDHKGPAHL-SIGQEAAA 91 +E L + + ++ IY M R +S L +++ G K H + GQEA A Sbjct: 27 EELLPKVSEGEIVEIYTYMVRARVIDSWLLKLQRMG---------KVALHAPNKGQEAVA 77 Query: 92 VGQALNLDVEDFIFGSHRSHGEILAKCYSAIWKLDEHRLREVMEGYLDGEILAVVDRIPH 151 VG A L +D++F S+R G L + S E LD + D + Sbjct: 78 VGAAKPLRRDDWVFPSYRELGAYLVRGMSE-------------EEILDRALANADDPLKG 124 Query: 152 TDVKDLAENFVLYGTLAEIFARKTGFNRGLGGSMHAFFVPFGVMPNNAIVGGSADIAVGA 211 +D F ++G RK + ++P VG I+VGA Sbjct: 125 SD-------FAIFGN------RK-----------------YNLVPAPVPVGNQIPISVGA 154 Query: 212 ALYKRINRRPGIVIANIGDGSTGCGPVWEAMMLASMDQYRRLWPEEIGGAPPMLFNFFNN 271 A + R + + GDG+T G + A + + P + NN Sbjct: 155 AYAMKYLGRDTVTLTFFGDGATSRGDFHAGLNFAGVFKV------------PAVLVIQNN 202 Query: 272 FYAMG----GQTLGETMGYQVLARIGAGVNPENMHAERVDGYNPLAVADAIARKKELLLA 327 +A+ QT ++ + LA GV R+DG + + V ++ E Sbjct: 203 QWAISVPRARQTAAPSLAVKGLAYGVPGV--------RIDGNDVMVVYKIVSDAAEKARR 254 Query: 328 GRGPVLLDTVTYRFSGHSPS-DASSYRTEDEVKRWEKVDPLKGYADYLVKHGIAAPEDLR 386 G GP L++ VTYR H+ + D S YRT +E + E+ +PL+ ++ GI ++ Sbjct: 255 GGGPTLIEAVTYRLGPHTTADDPSRYRTSEEERIMERYEPLRRMRKFMESMGILTEKEAL 314 Query: 387 ELDERVRQKLIPVVKLATDDEVSPRVPGTFIESVMFSNDKVDRFDDREPEVLQSLEENPR 446 ++E K+ +V+ P +P E+V F N +P +Q EE Sbjct: 315 SIEEEWNSKVEEIVRKVL---AKPPLP----ENVFFQN-----VYGEKPWFIQE-EERDL 361 Query: 447 VKSIRRKERFGL 458 ++++ E GL Sbjct: 362 EETLKTMEELGL 373 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 888,615 Number of Sequences: 1700 Number of extensions: 42701 Number of successful extensions: 117 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 111 Number of HSP's gapped (non-prelim): 3 length of query: 818 length of database: 492,079 effective HSP length: 85 effective length of query: 733 effective length of database: 347,579 effective search space: 254775407 effective search space used: 254775407 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718516|ref|YP_003874048.1| hypothetical protein STHERM_c08260 [Spirochaeta thermophila DSM 6192] (451 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 495,612 Number of Sequences: 1700 Number of extensions: 23749 Number of successful extensions: 66 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66 Number of HSP's gapped (non-prelim): 0 length of query: 451 length of database: 492,079 effective HSP length: 80 effective length of query: 371 effective length of database: 356,079 effective search space: 132105309 effective search space used: 132105309 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718517|ref|YP_003874049.1| hypothetical protein STHERM_c08270 [Spirochaeta thermophila DSM 6192] (387 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum... 77 7e-16 gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] 51 5e-08 >gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum pernix K1] Length = 250 Score = 77.0 bits (188), Expect = 7e-16 Identities = 58/164 (35%), Positives = 86/164 (52%), Gaps = 12/164 (7%) Query: 143 AYVCIADLNGEGAERLADEINAEAGEPVAWAVQVNVADEGSVEGLFARIVEEAGGLDLCV 202 AY ADL AE+ A+E G P A+ V+V+V D SV + +R+ E L++ V Sbjct: 33 AYKSRADL----AEKTAEEAR-RLGSPEAYTVRVDVGDPDSVTEMSSRVGELIPHLNVLV 87 Query: 203 SNAGVLRAGSVLSQSSGDFRFVTEVNYVAFFLVTKHAARIMRAQHLLAPRWYTDIVQINS 262 + AGVL+ G + S ++ VN +LVTK ++R +W IV + S Sbjct: 88 NAAGVLQLGGIEETSISEWEETLRVNLTGVYLVTKLLLPLLR-----KAKW-ASIVNVAS 141 Query: 263 KSGLAGSNKNG-AYAGSKFGGIGLVQSFALELVEYHIKVNAICP 305 +G G+ G AY+ SK G IGL + A++L Y I+VNA+ P Sbjct: 142 IAGETGNVVAGVAYSASKAGVIGLTKRLAVQLAGYGIRVNAVAP 185 >gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] Length = 260 Score = 50.8 bits (120), Expect = 5e-08 Identities = 56/248 (22%), Positives = 106/248 (42%), Gaps = 20/248 (8%) Query: 138 LCASGAYVCIADLNGEGAERLADEINAEAGEPVAWAVQVNVADEGSVEGLFARIVEEAGG 197 L +GA + + N E E A I + V ++ + G ++ LF + + GG Sbjct: 27 LARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEK-ARDLGG 85 Query: 198 LDLCVSNAGVLRAGSVLSQSSGDFRFVTEVNYVAFFLVTKHAARI-MRAQHLLAPRWYTD 256 D+ V + G R G + D+ ++ L+ + A + RA + + + Sbjct: 86 ADILVYSTGGPRPGRFMELGVEDWD-------ESYRLLARSAVWVGRRAAEQMVEKGWGR 138 Query: 257 IVQINSKSGLAGSNKNGAYAGSKFGGIGLVQSFALELVEYHIKVNAICPGNFFDGPLWSD 316 +V I S + L + IG+V++ ALEL + + VNA+ P + +D Sbjct: 139 MVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLP-----SLILTD 193 Query: 317 PEKGLFVQYLRAGKVPGARTVDDVRRYYESKIPMGRGCTGPDVMRALYYIVEQE--YETG 374 + L + R + TV++ + S+IPMGR ++ + ++ ++ + TG Sbjct: 194 RVRSLAEERARRSGI----TVEEALKSMASRIPMGRVGKPEELASVVAFLASEKASFITG 249 Query: 375 QALPVAGG 382 +PV GG Sbjct: 250 AVIPVDGG 257 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 327,210 Number of Sequences: 1700 Number of extensions: 13595 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 2 length of query: 387 length of database: 492,079 effective HSP length: 79 effective length of query: 308 effective length of database: 357,779 effective search space: 110195932 effective search space used: 110195932 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718518|ref|YP_003874050.1| hypothetical protein STHERM_c08280 [Spirochaeta thermophila DSM 6192] (506 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 527,706 Number of Sequences: 1700 Number of extensions: 23567 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 506 length of database: 492,079 effective HSP length: 81 effective length of query: 425 effective length of database: 354,379 effective search space: 150611075 effective search space used: 150611075 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718519|ref|YP_003874051.1| L-sorbose 1-phosphate reductase [Spirochaeta thermophila DSM 6192] (420 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 453,910 Number of Sequences: 1700 Number of extensions: 21110 Number of successful extensions: 63 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63 Number of HSP's gapped (non-prelim): 0 length of query: 420 length of database: 492,079 effective HSP length: 79 effective length of query: 341 effective length of database: 357,779 effective search space: 122002639 effective search space used: 122002639 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718520|ref|YP_003874052.1| hypothetical protein STHERM_c08300 [Spirochaeta thermophila DSM 6192] (642 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 609,489 Number of Sequences: 1700 Number of extensions: 26745 Number of successful extensions: 77 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77 Number of HSP's gapped (non-prelim): 0 length of query: 642 length of database: 492,079 effective HSP length: 83 effective length of query: 559 effective length of database: 350,979 effective search space: 196197261 effective search space used: 196197261 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718521|ref|YP_003874053.1| hypothetical protein STHERM_c08310 [Spirochaeta thermophila DSM 6192] (475 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 453,593 Number of Sequences: 1700 Number of extensions: 19471 Number of successful extensions: 76 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76 Number of HSP's gapped (non-prelim): 0 length of query: 475 length of database: 492,079 effective HSP length: 80 effective length of query: 395 effective length of database: 356,079 effective search space: 140651205 effective search space used: 140651205 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718522|ref|YP_003874054.1| transporter [Spirochaeta thermophila DSM 6192] (341 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 327,347 Number of Sequences: 1700 Number of extensions: 14547 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 341 length of database: 492,079 effective HSP length: 77 effective length of query: 264 effective length of database: 361,179 effective search space: 95351256 effective search space used: 95351256 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718523|ref|YP_003874055.1| ribose/galactose/methyl galactoside import ATP-bindingprotein [Spirochaeta thermophila DSM 6192] (502 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 249 1e-67 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 200 8e-53 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 124 5e-30 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 117 5e-28 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 114 5e-27 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 110 1e-25 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 107 7e-25 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 103 1e-23 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 102 3e-23 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 101 5e-23 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 100 8e-23 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 99 2e-22 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 98 5e-22 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 96 2e-21 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 91 5e-20 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 90 1e-19 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 89 2e-19 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 88 5e-19 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 87 1e-18 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 84 1e-17 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 82 4e-17 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 81 5e-17 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 80 1e-16 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 79 2e-16 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 79 3e-16 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 79 3e-16 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 79 3e-16 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 79 3e-16 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 77 1e-15 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 76 2e-15 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 76 2e-15 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 76 2e-15 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 76 2e-15 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 72 3e-14 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 72 3e-14 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 71 7e-14 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 70 9e-14 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 67 8e-13 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 67 1e-12 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 56 2e-09 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 249 bits (636), Expect = 1e-67 Identities = 175/494 (35%), Positives = 255/494 (51%), Gaps = 28/494 (5%) Query: 8 LKDVSMMYP-GTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLEG 66 ++ + +YP G ALD V F +R GEVHAL+GENGAGK+TL++I+ G + PT G I++ G Sbjct: 15 MRGIVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYVWG 74 Query: 67 KEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRAAA 126 ++V++ P DA + GIA+++Q+ + ++V ENI +Y + L E RR Sbjct: 75 RKVSWRGPWDAIRNGIAMVYQQFRLVESMTVEENI----AIYLSSLGL-GRSEARRRTLE 129 Query: 127 ILEELGVPLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFGII 186 E LG+ +D V DL RQ VEI KAL+ A+++I+DEPTS+L+ E E LF + Sbjct: 130 TAERLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTL 189 Query: 187 RDLKASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGE-VRETSREEIIRMMIGRKIE 245 R LK G VV+I+HK E+ +AD TVLR G+ E V TS EE+ R+M+G + Sbjct: 190 RLLKDMGVSVVYITHKLGEVVRVADRVTVLRRGRVSAVIEDVGRTSEEELARLMVG-TLP 248 Query: 246 QYYPERNSRPGEVVLEVRNLS--REGV--FHDVSFEVRRGEILGFFGLVGSGRTEVMRCI 301 P + G +L VR +S +GV +VS EVR GEI+G G+ G+G+ E++ I Sbjct: 249 PPTPRPPGKVGRELLSVRGVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAI 308 Query: 302 AGVDAWGSGEVRFRGETVRFRSLREAMRRGIVYVPEDRQLQGCILNM--SICENITLPLL 359 G+ G + +G R + R G Y+ DR G +L M S+ ENI Sbjct: 309 IGLRRPVRGSIEVQGR--RIEGSLDFYRAGGGYIAGDR---GKVLAMDYSVAENIAFLYY 363 Query: 360 TA----LHKRGWIDXXXXXXXXXXXXXXLEVKAPHVHVWVNALSGGNQQKVVLAKWLAAQ 415 TA L +R ++ P V LSGGNQQKV++ + Sbjct: 364 TASKTLLLRRSRLEDLFRRLVERFRLVARSPWTP-----VGRLSGGNQQKVIVGSEVLRG 418 Query: 416 PSLLILDEPTRGIDIATKXXXXXXXXXXXXQGXXXXXXXXXXXXXXGMADRVVVFHEGKV 475 LL+ PT+G+DIAT QG ++DR+ V G+V Sbjct: 419 FKLLVAVNPTQGLDIATTSFVRNLLSELARQGAGILLVSTDLDEILELSDRIYVMSGGRV 478 Query: 476 TGVFDARACTSEEI 489 TGV + T E++ Sbjct: 479 TGVLERSQATPEKL 492 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 200 bits (508), Expect = 8e-53 Identities = 139/430 (32%), Positives = 220/430 (51%), Gaps = 11/430 (2%) Query: 6 LELKDVSMMYPGTL-ALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFL 64 L ++D+ ++YPG + AL GV+ G V AL+GENGAGK+TL+K + GV+ P KGRI + Sbjct: 5 LAVEDLDVVYPGGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILV 64 Query: 65 EGKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRA 124 +G E+ P D+ ++GI + Q V+P + E++ ++ V + L + M A Sbjct: 65 DGYELRPKGPGDSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAEA 124 Query: 125 AAILEELGVPLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFG 184 + E LG+ +D + ++ +ERQ +E+ KAL +R V++DEPT+ L+ E + Sbjct: 125 S---EALGLNIDPDRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLE 181 Query: 185 IIRDLKASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRETSREEIIRMMIGRKI 244 L ASG V+ ++H+ E E AD +LR G V EG +S EE+ ++M G + Sbjct: 182 AAGRLAASGAAVLLVTHRIGEAMEHADRLVILRKGVKVYEGP-PPSSTEEVAKLMFGEVL 240 Query: 245 EQYYPE---RNSRPGEVVLEVRNLSREGVFHDVSFEVRRGEILGFFGLVGSGRTEVMRCI 301 P+ + G VL V +S EVR+GE++G G+ G+G+ E+ I Sbjct: 241 APREPKTFTAATSTGRPVLSVDRVSLPPRLRMARLEVRQGEVVGVAGVAGNGQEELFEVI 300 Query: 302 AGVDAWGSGEVRFRGETVRFRSLREAMRRGIVYVPEDRQLQGCILNMSICENITLPLLTA 361 G+ G + G V R G+ +PE+R + SI NI L + TA Sbjct: 301 VGLRKPAKGRILIAGVDVTRAPPLARRRLGLGVIPEERLGHALVPGESIAFNIALSIHTA 360 Query: 362 LHKRGWI-DXXXXXXXXXXXXXXLEVKAPHVHVWVNALSGGNQQKVVLAKWLAAQPSLLI 420 + G+I D + +KA V+ LSGGN Q++VLA+ L +P LL+ Sbjct: 361 --RDGFIVDWRYYEKLAEEMIRDMGIKAVSPRQMVDELSGGNMQRLVLARELWLKPRLLV 418 Query: 421 LDEPTRGIDI 430 P G+D+ Sbjct: 419 AMNPAAGLDL 428 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 124 bits (311), Expect = 5e-30 Identities = 69/234 (29%), Positives = 124/234 (52%), Gaps = 5/234 (2%) Query: 3 TPLLELKDVSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRI 62 T +L+++DV + G AL GVSF +R+GE LIG NGAGK+TL I+SG+ P +GR+ Sbjct: 2 TIILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRV 61 Query: 63 FLEGKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHR 122 +G ++ +AGIA Q +L+V N+ + + + + +E Sbjct: 62 IYKGVDITGWPAYRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDI-----REARE 116 Query: 123 RAAAILEELGVPLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDL 182 RA ++ +G+ KDL+ E++ +E+A+AL + ++++DE + L REV+DL Sbjct: 117 RAMEAIDMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDL 176 Query: 183 FGIIRDLKASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRETSREEII 236 + ++ G ++ + H + A+ VL G+ + EG RE + +++ Sbjct: 177 VYTLLEISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVASNKLV 230 Score = 55.8 bits (133), Expect = 2e-09 Identities = 56/245 (22%), Positives = 102/245 (41%), Gaps = 14/245 (5%) Query: 258 VVLEVRNLSRE----GVFHDVSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWGSGEVR 313 ++L+VR++ + VSF VRRGE +G G G+G+T + I+G+ G V Sbjct: 3 IILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVI 62 Query: 314 FRGETVRFRSLREAMRRGIVYVPEDRQLQGCILNMSICENITLPLLTALHKRGWIDXXXX 373 ++G + + A RR + Q+ + N+++ N+ ++ AL + I Sbjct: 63 YKGVDI---TGWPAYRRSRAGIARTFQIVRPLANLTVLNNV---IVGALLRTNDIREARE 116 Query: 374 XXXXXXXXXXLEVKAPHVHVWVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGIDIATK 433 L K + +N + ++++ LA+ LA QP LL+LDE G+ Sbjct: 117 RAMEAIDMVGLAGKEDILAKDLNLI---EKKRLELARALATQPELLLLDEIAAGLRPREV 173 Query: 434 XXXXXXXXXXXXQGXXXXXXXXXXXXXXGMADRVVVFHEG-KVTGVFDARACTSEEIMRA 492 +G A+RV+V H G K+ +++ ++ A Sbjct: 174 DDLVYTLLEISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVASNKLVIEA 233 Query: 493 ALGHG 497 +G G Sbjct: 234 YMGTG 238 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 117 bits (294), Expect = 5e-28 Identities = 70/246 (28%), Positives = 128/246 (52%), Gaps = 15/246 (6%) Query: 5 LLELKDVSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFL 64 +L +++++ + G ALD VS +R+GE+ +IG NGAGK++L+ +++GV P +GR++ Sbjct: 1 MLWTENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYF 60 Query: 65 EGKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENI-----------FMSSPVYAGRVP 113 +G+++ P G++ Q + +F ++V ENI + ++A R Sbjct: 61 KGRDITGLKPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAK 120 Query: 114 LLSWK-EMHRRAAAILEELGVPLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTS 172 W+ E RA +++ L + +P+ L ++ V++A AL +V+MDEP + Sbjct: 121 --RWEVEARERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMA 178 Query: 173 SLSAREVEDLF-GIIRDLKASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRETS 231 LS E ED+ II + T +V I H E + ++ D V+ G+ + EG E Sbjct: 179 GLSKEEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHEAV 238 Query: 232 REEIIR 237 +E +R Sbjct: 239 ADERVR 244 Score = 65.1 bits (157), Expect = 4e-12 Identities = 65/239 (27%), Positives = 94/239 (39%), Gaps = 24/239 (10%) Query: 273 DVSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWGSGEVRFRGETVRFRSLREAMRRGI 332 +VS EVRRGEILG G G+G+T ++ I GV G V F+G + + + G+ Sbjct: 19 NVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDITGLKPHQRITLGL 78 Query: 333 VYVPEDRQLQGCILNMSICENITLPL------------LTALHKRGWIDXXXXXXXXXXX 380 + +L +M++ ENI + L L A + W Sbjct: 79 SRTFQHSEL---FHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWEVEARERAEHVID 135 Query: 381 XXXLEVKAPHVHVWVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGIDIATK-XXXXXX 439 L H H + AL G Q+KV LA LA P ++++DEP G+ K Sbjct: 136 LLDLH---EHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEKEDIVRAI 192 Query: 440 XXXXXXQGXXXXXXXXXXXXXXGMADRVVVFHEGKVTGVFDA---RACTSEEIMRAALG 495 + DRVVV GKV +F+ A E + +A LG Sbjct: 193 IETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKV--IFEGPPHEAVADERVRKAYLG 249 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 114 bits (285), Expect = 5e-27 Identities = 67/215 (31%), Positives = 113/215 (52%), Gaps = 7/215 (3%) Query: 15 YPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLEGKEVAFGSP 74 Y G A+DGVSFRI +GE+ +L+G NGAGK+T +K++S +L PT G ++ G + P Sbjct: 16 YGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWIAGYSIV-REP 74 Query: 75 LDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRAAAILEELGVP 134 + ++ I ++ Q+ ++S +N+++ + +Y L E R +L+ L + Sbjct: 75 GNVRRV-IGLVPQDLTADDEMSGWDNVYIQARLYG-----LPSSEARERTREVLDYLDLM 128 Query: 135 LDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFGIIRDLKASGT 194 V S R+ +EIA +L H +++ +DEPT L L+ I DLK S Sbjct: 129 EAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLKRSAV 188 Query: 195 GVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRE 229 ++ +H EE E ++D ++ G+ V EG E Sbjct: 189 TILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEE 223 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 110 bits (274), Expect = 1e-25 Identities = 73/242 (30%), Positives = 125/242 (51%), Gaps = 10/242 (4%) Query: 5 LLELKDVSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFL 64 +L ++D+ + G +ALD V+ I +G+V LIG NG+GK+TLV ++SG P GR+ Sbjct: 6 ILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLF 65 Query: 65 EGKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSP-----VYAGRVPLLSWKE 119 +G+++ SP + K G+ Q F +L+V EN+ ++ VY + W Sbjct: 66 KGRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWLG 125 Query: 120 MHRRAAA-ILEELG-VPLDTRTPVK--DLSTAERQLVEIAKALTHRARIVIMDEPTSSLS 175 +RAAA E LG V LD + +LS + +L+EIA+A+ A ++IMDEP + ++ Sbjct: 126 FEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVN 185 Query: 176 AREVEDLFGIIRDL-KASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRETSREE 234 R + I+ L + G + I H+ ++E D + G+ + G+ E Sbjct: 186 PRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEVLNNP 245 Query: 235 II 236 ++ Sbjct: 246 VV 247 Score = 52.0 bits (123), Expect = 3e-08 Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 21/189 (11%) Query: 256 GEVVLEVRNLSRE--GV--FHDVSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWGSGE 311 G+++L V +L + G+ V+ E+ RG++ G GSG+T ++ I+G G Sbjct: 3 GDIILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGR 62 Query: 312 VRFRGETVRFRSLREAMRRGIVYVPEDRQLQGCILNMSICENITLP--------LLTALH 363 V F+G + S E + G+V Q+ N+++ EN+ L L Sbjct: 63 VLFKGRDITGMSPHEISKLGLV---RTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLA 119 Query: 364 KRGWIDXXXXXXXXXXXXXXLEVKAPHVHVW---VNALSGGNQQKVVLAKWLAAQPSLLI 420 +R W+ H+W LSGG + + +A+ + ++I Sbjct: 120 RRLWLGFEKRAAARAFEILGW---VGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMII 176 Query: 421 LDEPTRGID 429 +DEP G++ Sbjct: 177 MDEPAAGVN 185 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 107 bits (267), Expect = 7e-25 Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 7/238 (2%) Query: 5 LLELKDVSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFL 64 +++L+DVS Y L VS I +G + ++G NGAGKSTL+K M G T KGR+ Sbjct: 5 IIKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLF 64 Query: 65 EGKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRA 124 E +V P D K G+ I Q +F +L+V EN+ ++ V +E+ Sbjct: 65 ENTDVTHMPPHDRAKIGMTFIFQLENIFRELTVYENLRLAGYDLPEDVFRDRLEEVFSMF 124 Query: 125 AAILEELGVPLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFG 184 + E LG T LS ERQ++ +A + + ++ ++DEPT+ LS + +++ Sbjct: 125 PRLKERLGQKAGT------LSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLS 178 Query: 185 IIRDLKASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRE-TSREEIIRMMIG 241 +R L G VV + + EI D ++ +G+ +G E +R+++ +M +G Sbjct: 179 YVRILNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDGPAEELLARKDLAKMYLG 236 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 103 bits (256), Expect = 1e-23 Identities = 64/206 (31%), Positives = 111/206 (53%), Gaps = 6/206 (2%) Query: 20 ALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLEGKEVAFGSPLDAQK 79 ALDGV ++ +G + +L+G NGAGK+TLVKI+S +L P G + G +V + + Sbjct: 28 ALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANNVRSR 87 Query: 80 AGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRAAAILEELGVPLDTRT 139 G+ V+ E A++ LS +N++ S +Y + +E RR +LE +G+ Sbjct: 88 IGV-VLGGERALYWRLSGWDNLWFFSQLYG-----IPPREAKRRVKELLEIVGLEEWAHV 141 Query: 140 PVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFGIIRDLKASGTGVVFI 199 V++ S +Q + IA+ L + ++++DEPT L + ++ IIR + G V+ Sbjct: 142 RVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVLLT 201 Query: 200 SHKFEEIEEIADHFTVLRDGQYVGEG 225 +H E EE++D ++ G+ V EG Sbjct: 202 THYMVEAEELSDRVAIISKGRIVAEG 227 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 102 bits (253), Expect = 3e-23 Identities = 63/228 (27%), Positives = 121/228 (53%), Gaps = 12/228 (5%) Query: 6 LELKDVSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLE 65 + L +V Y AL GVSF + + A++G +G GK+T++K+++G+L P +GR+F Sbjct: 6 VRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFG 65 Query: 66 GKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRAA 125 G + + L ++ + + Q+ A+FP ++V +N+ + R S E+ R+ Sbjct: 66 GVDY---TGLPPERRSVGFVFQDLALFPHMTVYDNV-----AFGLRARGFSGGEVRRQVE 117 Query: 126 AILEELGVPLDTR---TPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDL 182 LE +G+ V LS ++Q V +A+A+ + ++++DEP S L + + L Sbjct: 118 WALETVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRL 177 Query: 183 FGIIRDLKAS-GTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRE 229 ++ L+ G+ +++++H E E+AD ++RDG+ V G E Sbjct: 178 LAELKRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSE 225 Score = 49.3 bits (116), Expect = 2e-07 Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 10/203 (4%) Query: 274 VSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWGSGEVRFRGETVRFRSLREAMRRGIV 333 VSF I G G G+T +++ IAG+ G V F G V + L RR + Sbjct: 24 VSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFGG--VDYTGLPPE-RRSVG 80 Query: 334 YVPEDRQLQGCILNMSICENITLPLLTALHKRGWIDXXXXXXXXXXXXXXLEVKAPHVHV 393 +V +D L +M++ +N+ L G + L + Sbjct: 81 FVFQDLAL---FPHMTVYDNVAFGLRARGFSGGEV---RRQVEWALETVGLTPPREFMGR 134 Query: 394 WVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGIDIATKXXXXXXXXXXXXQ-GXXXXX 452 V LSGG QQ+V LA+ +A +P +L+LDEP +D + + G Sbjct: 135 RVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQRKLGSTMIY 194 Query: 453 XXXXXXXXXGMADRVVVFHEGKV 475 +AD +V+ +G++ Sbjct: 195 VTHDQWEAMELADTLVIMRDGRI 217 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 101 bits (251), Expect = 5e-23 Identities = 75/243 (30%), Positives = 126/243 (51%), Gaps = 16/243 (6%) Query: 6 LELKDVSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLE 65 + L+ V+ + T+ALD VS I GE+ L+G +G GK+T +++++G TP +GR+++ Sbjct: 4 IRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIG 63 Query: 66 GKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRA- 124 ++V P + A++ Q A++P + V +NI Y ++ L E+ RR Sbjct: 64 SRDVTMLKPYE---RNTAMVFQNYALWPHMRVFDNI-----AYGLKLRKLPRSEIVRRVR 115 Query: 125 -AAILEELGVPLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAR-EVEDL 182 AA L E+ LD R P LS ++Q V +A+A+ +++MDEP S+L A ++ Sbjct: 116 WAAELLEIDHLLD-RYP-HQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMR 173 Query: 183 FGIIRDLKASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEG---EVRETSREEIIRMM 239 I+R K G +V+++H EE I+ V+ G+ G EV E + Sbjct: 174 EEIVRLQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVYEKPATYFVATF 233 Query: 240 IGR 242 IGR Sbjct: 234 IGR 236 Score = 49.7 bits (117), Expect = 2e-07 Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 12/156 (7%) Query: 274 VSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWGSGEVRFRGETVRFRSLREAMRRGIV 333 VS + GEI G G G+T +R IAG + G V V ++ + R Sbjct: 22 VSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIGSRDV---TMLKPYERNTA 78 Query: 334 YVPEDRQLQGCILNMSICENITLPLLTALHKRGWIDXXXXXXXXXXXXXXLEVKAPHVHV 393 V ++ L +M + +NI L R I L + PH Sbjct: 79 MVFQNYALWP---HMRVFDNIAYGLKLRKLPRSEIVRRVRWAAELLEIDHLLDRYPH--- 132 Query: 394 WVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGID 429 LSGG QQ+V +A+ + +P +L++DEP +D Sbjct: 133 ---QLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLD 165 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 100 bits (249), Expect = 8e-23 Identities = 67/233 (28%), Positives = 120/233 (51%), Gaps = 15/233 (6%) Query: 4 PLLELKDVSMMY-PGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVL-----TP 57 PLL + +V +MY P L + +S + +G + LIG NGAGK+TL+K +SGV+ Sbjct: 3 PLLNVSNVEIMYHPFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRV 62 Query: 58 TKGRIFLEGKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSW 117 T+G I LEG+++ P + + G+ + + +F +L+ EN+ S YA Sbjct: 63 TRGSIQLEGEDITNREPDEIARRGVIYVMEGRRIFKELTTEENLV--SVAYAAGASRDDI 120 Query: 118 KEMHRRAAAILEELGVPLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAR 177 + + + E LG +LS E+Q++ IA AL +R +++++DEP+ L+ + Sbjct: 121 RSVLSYFPRLKERLG------EKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPK 174 Query: 178 EVEDLFGIIRDL-KASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRE 229 ++ I+ L + G ++ + EI+D+ V+ +G+ V EG E Sbjct: 175 ITSQIYATIKMLHREEGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEE 227 Score = 60.1 bits (144), Expect = 1e-10 Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 17/164 (10%) Query: 270 VFHDVSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWGSGEV-----RFRGETVRFRSL 324 V ++S V +G I G G+G+T +++ ++GV + G V + GE + R Sbjct: 20 VIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNREP 79 Query: 325 REAMRRGIVYVPEDRQLQGCILNMSICENITLPLLTALHKRGWIDXXXXXXXXXXXXXXL 384 E RRG++YV E R++ ++ EN+ A R D L Sbjct: 80 DEIARRGVIYVMEGRRI---FKELTTEENLVSVAYAAGASRD--DIRSVLSYFPRLKERL 134 Query: 385 EVKAPHVHVWVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGI 428 KA + LSGG QQ + +A L +P LL+LDEP+ G+ Sbjct: 135 GEKAGN-------LSGGEQQMLAIAMALLYRPKLLMLDEPSLGL 171 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 99.4 bits (246), Expect = 2e-22 Identities = 69/238 (28%), Positives = 119/238 (50%), Gaps = 6/238 (2%) Query: 1 METPLLELKDVSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKG 60 M PLLE+K + + Y AL GVS R+ +GE+ AL+G NGAGK+T + +SG+L P G Sbjct: 2 MAEPLLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNG 61 Query: 61 RIFLEGKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEM 120 I +G+++ + GI+ + + +FP L+V EN+ +++ + E Sbjct: 62 SIIWQGRDITGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRVAASTRRAKEHFQDSLEQ 121 Query: 121 HRRAAAILEELGVPLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVE 180 IL+ L LS E+Q++ IA+AL R +++MDEP+ L+ + Sbjct: 122 VYTIFPILKARRSQL-----AGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLAR 176 Query: 181 DLFGIIRDLKAS-GTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRETSREEIIR 237 D+ + L+ G ++ + ++AD V+ G+ V EG E + + I+ Sbjct: 177 DVIYLASRLREELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDELALDPRIK 234 Score = 58.5 bits (140), Expect = 4e-10 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 13/176 (7%) Query: 257 EVVLEVRNLS-REGVFH---DVSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWGSGEV 312 E +LEV+++ G F VS V +GEI+ G G+G+T + I+G+ +G + Sbjct: 4 EPLLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSI 63 Query: 313 RFRGETVRFRSLREAMRRGIVYVPEDRQLQGCILNMSICENITLPLLTALHKRGWIDXXX 372 ++G + + + GI +VPE R G +++ EN+ + T K + D Sbjct: 64 IWQGRDITGLPAFKRVEEGISHVPEGR---GIFPRLTVYENLRVAASTRRAKEHFQDSLE 120 Query: 373 XXXXXXXXXXXLEVKAPHVHVWVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGI 428 +KA + LSGG QQ + +A+ L +P LL++DEP+ G+ Sbjct: 121 QVYTIFPI-----LKARRSQL-AGTLSGGEQQMLAIARALIQRPILLMMDEPSLGL 170 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 97.8 bits (242), Expect = 5e-22 Identities = 68/229 (29%), Positives = 121/229 (52%), Gaps = 13/229 (5%) Query: 6 LELKDVSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLE 65 + L+ V + +A+D V I+ GE L+G +G GK+T +++++G+ P +GRI ++ Sbjct: 4 IRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILID 63 Query: 66 GKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRAA 125 G++V F P D +A++ Q A++P +SV +NI + + + L ++ RR Sbjct: 64 GEDVTFKDPKD---RNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTK-DDIRRRVI 119 Query: 126 AILEELGV-PLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSA----REVE 180 + + L + L R P LS ++Q V +A+AL R ++ +MDEP S+L A Sbjct: 120 EVAKLLRIEDLLDRKP-GQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRA 178 Query: 181 DLFGIIRDLKASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRE 229 +L + +DLK + V+++H E +AD V+ G+ V G E Sbjct: 179 ELKKLQKDLKIT---TVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEE 224 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 96.3 bits (238), Expect = 2e-21 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 9/249 (3%) Query: 5 LLELKDVSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFL 64 LLE++ + + Y G L GV + GE ++G +G+GKSTL+K + ++ P G I Sbjct: 4 LLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVF 63 Query: 65 EGKEVA--FGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHR 122 G +V GS L + I + Q ++FP ++V NI G LS ++ Sbjct: 64 RGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALG----LSRRDAEE 119 Query: 123 RAAAILEELGV-PLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVED 181 RA L LG+ L R P + LS ++Q +A+AL I+++DEPTS+L D Sbjct: 120 RAVKYLSMLGIEDLAHRHPAR-LSGGQQQRAALARALAMEPDILLLDEPTSALDPESRAD 178 Query: 182 LFGIIRDLKASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRE-TSREEIIRMMI 240 + + + G ++ ++H+ + ++AD + DG EG+ E E +R + Sbjct: 179 VLEALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSELVEGSERVRRFL 238 Query: 241 GRKIEQYYP 249 +E P Sbjct: 239 ESILESCAP 247 Score = 69.3 bits (168), Expect = 2e-13 Identities = 64/223 (28%), Positives = 94/223 (42%), Gaps = 14/223 (6%) Query: 259 VLEVRNL----SREGVFHDVSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWGSGEVRF 314 +LEVR L S E V V + GE L G GSG++ +++ I + SG + F Sbjct: 4 LLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVF 63 Query: 315 RGETVRFRSLREA--MRRGIVYVPEDRQLQGCILNMSICENITLPLLTALHKRGWIDXXX 372 RG V S + +RR I Y+P+ L +M++ NIT PL AL + Sbjct: 64 RGVDVTRLSGSQLRMVRRKIGYLPQSYSL---FPHMTVLRNITYPLEKALG----LSRRD 116 Query: 373 XXXXXXXXXXXLEVKAPHVHVWVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGIDIAT 432 L ++ H LSGG QQ+ LA+ LA +P +L+LDEPT +D + Sbjct: 117 AEERAVKYLSMLGIE-DLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPES 175 Query: 433 KXXXXXXXXXXXXQGXXXXXXXXXXXXXXGMADRVVVFHEGKV 475 + G +ADR+ +G V Sbjct: 176 RADVLEALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIV 218 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 91.3 bits (225), Expect = 5e-20 Identities = 60/215 (27%), Positives = 107/215 (49%), Gaps = 8/215 (3%) Query: 20 ALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLEGKEVAFGSPLDAQK 79 AL GVSF + +GE+++ +G NGAGK+T V+I+S +L P G + G +V ++ Sbjct: 27 ALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAGFDVVKERWEVRKR 86 Query: 80 AGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRAAAILEELGVP--LDT 137 G+ ++ E + L+ EN++ Y GR+ + E+ R +L+ +G+ Sbjct: 87 IGV-MLSVERGFYWKLTGRENLY-----YFGRIYGIPQGELKSRIKEVLDLVGLTDLGGA 140 Query: 138 RTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFGIIRDLKASGTGVV 197 P +++S + + +A+ L ++I+DEPT L + G+IR L + G + Sbjct: 141 DKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSLASEGRTIF 200 Query: 198 FISHKFEEIEEIADHFTVLRDGQYVGEGEVRETSR 232 +H E E I+D ++ G+ EG E R Sbjct: 201 ITTHNMVEAEMISDRVGIIIGGRIAMEGTPDELKR 235 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 89.7 bits (221), Expect = 1e-19 Identities = 69/224 (30%), Positives = 110/224 (49%), Gaps = 7/224 (3%) Query: 6 LELKDVSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLE 65 +E + + + G A+ GVSF + GE ++G NG+GK+TL++++SGVL P+ G + + Sbjct: 5 VEARGLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVC 64 Query: 66 GKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRAA 125 G +V +G + I Q+ + ++ AE I G + LS R A Sbjct: 65 GYDV-WGDGWREARGLIGFAPQDPPMARRMTGAEYI-----TVVGGLLGLSPGVARREAR 118 Query: 126 AILEELGVPLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFGI 185 +LE LG V LS +R+ + IA AL +V++DEP S L R E L+ Sbjct: 119 RVLEMLGFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWAS 178 Query: 186 IRDLKASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRE 229 +R G V+F SH +E E +D ++ G+ G+ RE Sbjct: 179 LRK-AFKGRTVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPRE 221 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 89.4 bits (220), Expect = 2e-19 Identities = 64/218 (29%), Positives = 115/218 (52%), Gaps = 13/218 (5%) Query: 6 LELKDVSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLE 65 + L+ + + T+AL G+ I+ GE L+G +G GK+T ++I++G+ P GR++ + Sbjct: 4 VRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFD 63 Query: 66 GKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRA- 124 G++V P D +A++ Q A++P + V +NI + ++ L E+ RR Sbjct: 64 GRDVTGLPPKD---RNVAMVFQSYALWPHMRVFDNI-----AFPLKIKKLPRDEIVRRVR 115 Query: 125 -AAILEELGVPLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLF 183 AA L E+ LD R P LS ++Q V +A+A+ +++MDEP S+L A + Sbjct: 116 WAAELLEIDHLLD-RYP-HQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMR 173 Query: 184 GIIRDL-KASGTGVVFISHKFEEIEEIADHFTVLRDGQ 220 I+ L + G +++++H E I D V+ G+ Sbjct: 174 SEIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGE 211 Score = 57.4 bits (137), Expect = 8e-10 Identities = 50/218 (22%), Positives = 86/218 (39%), Gaps = 13/218 (5%) Query: 262 VRNLSREGVFHDVSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWGSGEVRFRGETVRF 321 V+ + + E++ GE + G G G+T +R +AG++ +G V F G V Sbjct: 10 VKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFDGRDVTG 69 Query: 322 RSLREAMRRGIVYVPEDRQLQGCILNMSICENITLPLLTALHKRGWIDXXXXXXXXXXXX 381 ++ R + V + L +M + +NI PL R I Sbjct: 70 LPPKD---RNVAMVFQSYALWP---HMRVFDNIAFPLKIKKLPRDEIVRRVRWAAELLEI 123 Query: 382 XXLEVKAPHVHVWVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGIDIATKXXXXXXXX 441 L + PH LSGG QQ+V +A+ + +P +L++DEP +D + Sbjct: 124 DHLLDRYPH------QLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIK 177 Query: 442 XXXXQ-GXXXXXXXXXXXXXXGMADRVVVFHEGKVTGV 478 + G + DR+VV + G++ V Sbjct: 178 KLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQV 215 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 87.8 bits (216), Expect = 5e-19 Identities = 57/216 (26%), Positives = 103/216 (47%), Gaps = 8/216 (3%) Query: 11 VSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLEGKEVA 70 V+ G L GVS ++ GE+H L G NGAGK+T ++++ G+L+ G + G + Sbjct: 20 VAKSVKGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVD-P 78 Query: 71 FGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRAAAILEE 130 +G + K + + ++A+V+ L+ ENI + +Y+G W+++ + Sbjct: 79 WGGGFERVKGEVGYLPEDASVYERLTGMENILFYARLYSG------WRDVEELVENAVFY 132 Query: 131 LGVPL-DTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFGIIRDL 189 G+ D S ++ + + L + R+V++DEPTS + + I+R L Sbjct: 133 SGLSREDLARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGL 192 Query: 190 KASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEG 225 G ++ +H EEIAD T++ G V G Sbjct: 193 SREGRAILVTTHDLALAEEIADRVTIIHGGSTVASG 228 Score = 57.8 bits (138), Expect = 6e-10 Identities = 53/204 (25%), Positives = 82/204 (40%), Gaps = 10/204 (4%) Query: 270 VFHDVSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWGSGEVRFRGETVRFRSLREAMR 329 V VS V+ GEI GL G+G+T +R + G+ + SGE R G + E ++ Sbjct: 29 VLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLG-VDPWGGGFERVK 87 Query: 330 RGIVYVPEDRQLQGCILNMSICENITLPLLTALHKRGWIDXXXXXXXXXXXXXXLEVKAP 389 + Y+PED + + M ENI L A GW D + Sbjct: 88 GEVGYLPEDASVYERLTGM---ENI---LFYARLYSGWRDVEELVENAVFYSG---LSRE 138 Query: 390 HVHVWVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGIDIATKXXXXXXXXXXXXQGXX 449 + S G +++++L L ++P L++LDEPT G+D +G Sbjct: 139 DLARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSREGRA 198 Query: 450 XXXXXXXXXXXXGMADRVVVFHEG 473 +ADRV + H G Sbjct: 199 ILVTTHDLALAEEIADRVTIIHGG 222 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 86.7 bits (213), Expect = 1e-18 Identities = 62/209 (29%), Positives = 109/209 (52%), Gaps = 13/209 (6%) Query: 19 LALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLEGKEVAFGSPLDAQ 78 +AL VS + +GEV A++G +G+GK+TL+ I++GV P GR+ ++G EV+ + + Sbjct: 28 VALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGEELR 87 Query: 79 K---AGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRAAAILEELGVPL 135 + + + Q+ + P L+ ENI + + AG+ L +E+ RR +G+ Sbjct: 88 RFRLERVGYVFQQHNLIPTLTALENILLPMAL-AGKANRLRGQELLRR-------VGLGG 139 Query: 136 DTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFGI-IRDLKASGT 194 R ++LS E+Q + +A AL + I++ DEPT L E + I + + + G Sbjct: 140 KERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEAHSRGK 199 Query: 195 GVVFISHKFEEIEEIADHFTVLRDGQYVG 223 VV +H + +AD V+ DG+ G Sbjct: 200 TVVLTTHD-PRVARMADRVAVIEDGRLRG 227 Score = 73.9 bits (180), Expect = 8e-15 Identities = 66/226 (29%), Positives = 89/226 (39%), Gaps = 15/226 (6%) Query: 273 DVSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWGSGEVRFRGETVRFRSLREAMRRGI 332 +VS V RGE+L G GSG+T ++ IAGVD +G V G V E R + Sbjct: 32 EVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGEELRRFRL 91 Query: 333 VYVPEDRQLQGCILNMSICENITLPLLTALHKRGWIDXXXXXXXXXXXXXXLEVKAPHVH 392 V Q I ++ ENI LP+ A E + P Sbjct: 92 ERVGYVFQQHNLIPTLTALENILLPMALAGKANR---LRGQELLRRVGLGGKERRYPE-- 146 Query: 393 VWVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGIDIATKXXXXXXXXXXXXQGXXXXX 452 LSGG QQ++ +A LA P +++ DEPT +DIAT Sbjct: 147 ----ELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEAHSRGKTVV 202 Query: 453 XXXXXXXXXGMADRVVVFHEGKVTGVFDARACTSEEIMRAALGHGE 498 MADRV V +G++ GV+ S + A G GE Sbjct: 203 LTTHDPRVARMADRVAVIEDGRLRGVY------SPSRIAGATGFGE 242 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 83.6 bits (205), Expect = 1e-17 Identities = 66/260 (25%), Positives = 115/260 (44%), Gaps = 20/260 (7%) Query: 5 LLELKDVSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFL 64 ++E++ + Y AL GVSF + GEV +G NGAGK+T ++++ G PT G + Sbjct: 4 VIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARV 63 Query: 65 EGKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRA 124 G E+ G + + + P E F V GR+ + + + Sbjct: 64 FGVEL--------YNPGASGVRRRVGYVP----GEFEFYGG-VSGGRMLDYWCRLVGGCS 110 Query: 125 AAILEEL--GVPLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDL 182 ++ EL PL V S +Q++ + A +H +V+MDEPT+ L + Sbjct: 111 RGVVRELLEAFPLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRV 170 Query: 183 FGIIRDLKASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRETSRE--EIIRMMI 240 +R G V F SH E++ +AD +LR G V +V R+ ++++ + Sbjct: 171 LDFVRSKAREGVTVFFSSHVLSEVQRVADRVGLLRSGVLVALEDVSSLLRKSGKVVKARV 230 Query: 241 GRKIEQYYPERNSRPGEVVL 260 + + P+R + G V+ Sbjct: 231 SKNLS---PDRLAVDGVRVI 247 Score = 54.3 bits (129), Expect = 7e-09 Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 19/227 (8%) Query: 258 VVLEVRNLSRE----GVFHDVSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWGSGEVR 313 VV+EV L + VSF V GE+ G+ G G+G+T +R + G SG R Sbjct: 3 VVIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSAR 62 Query: 314 FRGETVRFRSLREAMRRGIVYVPEDRQLQGCILNMSICENITLPLLTALHKRGWIDXXXX 373 G + + +RR + YVP + + G + + + L RG + Sbjct: 63 VFGVEL-YNPGASGVRRRVGYVPGEFEFYGGVSGGRMLDYWC--RLVGGCSRGVV----- 114 Query: 374 XXXXXXXXXXLEVKAPHVHVWVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGIDIATK 433 LE + V S G +Q + L + +P L+++DEPT G+D + Sbjct: 115 -------RELLEAFPLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLAR 167 Query: 434 XXXXXXXXXXXXQGXXXXXXXXXXXXXXGMADRVVVFHEGKVTGVFD 480 +G +ADRV + G + + D Sbjct: 168 GRVLDFVRSKAREGVTVFFSSHVLSEVQRVADRVGLLRSGVLVALED 214 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 81.6 bits (200), Expect = 4e-17 Identities = 60/249 (24%), Positives = 122/249 (48%), Gaps = 27/249 (10%) Query: 6 LELKDVSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLE 65 ++L+ V ++ +A+ V+ I E +++G +G+GK+TL+ +++G+ P++GRI+ Sbjct: 4 VKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFN 63 Query: 66 GKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRAA 125 +V + L K I ++ Q A++P ++V ENI + R+ + + Sbjct: 64 DVDV---TDLPPNKRNIGLVFQNYALYPHMTVYENI-----AFPLRLRNFGEPAIKEKVL 115 Query: 126 AILEELGVP-LDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFG 184 ++ + LG+ L R P + LS ++Q V +A+AL ++++DEP S+L A + Sbjct: 116 SVAKLLGIEGLLDRYPAQ-LSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRS 174 Query: 185 IIRDL-KASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRETSREEIIRMMIGRK 243 ++ L K G ++++H E +AD ++ G + +G+ Sbjct: 175 ELKKLQKELGITAIYVTHDQSEALAMADRIAIIASG----------------VIQQVGKP 218 Query: 244 IEQYYPERN 252 + YY RN Sbjct: 219 WDVYYKPRN 227 Score = 51.6 bits (122), Expect = 4e-08 Identities = 52/208 (25%), Positives = 77/208 (37%), Gaps = 15/208 (7%) Query: 273 DVSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWGSGEVRFRGETVRFRSLREAMRR-G 331 DV+ + E + G GSG+T ++ IAG+ G + F V L R G Sbjct: 21 DVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYF--NDVDVTDLPPNKRNIG 78 Query: 332 IVYVPEDRQLQGCILNMSICENITLPLLTALHKRGWIDXXXXXXXXXXXXXXLEVKAPHV 391 +V+ Q +M++ ENI PL I L + P Sbjct: 79 LVF-----QNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVAKLLGIEGLLDRYP-- 131 Query: 392 HVWVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGIDIATKXXXXXXXXXXXXQ-GXXX 450 LSGG QQ+V LA+ L +P +L+LDEP +D + + G Sbjct: 132 ----AQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQKELGITA 187 Query: 451 XXXXXXXXXXXGMADRVVVFHEGKVTGV 478 MADR+ + G + V Sbjct: 188 IYVTHDQSEALAMADRIAIIASGVIQQV 215 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 81.3 bits (199), Expect = 5e-17 Identities = 63/222 (28%), Positives = 109/222 (49%), Gaps = 22/222 (9%) Query: 20 ALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLEGKEVA-FGSPLDAQ 78 A+DGV IR+GEV A++GE+G GK+TL K + G+ P+ G I+ G+ + D + Sbjct: 37 AVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARDRR 96 Query: 79 -KAGIAVIHQEA--AVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRAAAILEELGVPL 135 + + ++ Q+ ++ P + V + + ++ L +E RRA +LE +G+ Sbjct: 97 LRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHG----LARGEEARRRAVEMLETVGL-- 150 Query: 136 DTRTPVKD--------LSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFGIIR 187 TP ++ LS +RQ V IA+ L +++ DEP S + + +I Sbjct: 151 ---TPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIM 207 Query: 188 DL-KASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVR 228 D + +G +V I+H +AD V+ G+ V GE R Sbjct: 208 DYHRRTGATIVLITHDIAVARAVADRIAVMYLGKIVEVGEPR 249 Score = 58.5 bits (140), Expect = 4e-10 Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 10/215 (4%) Query: 274 VSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWGSGEVRFRGETVRFRSLRE--AMRRG 331 V +R GE+L G G G+T + + I G++ G + +RGE + L +RR Sbjct: 41 VDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARDRRLRRK 100 Query: 332 IVYVPEDRQLQGCILNMSICENITLPLLTALHKRGWIDXXXXXXXXXXXXXXLEVKAPHV 391 + V +D L M + + + PL+ RG + + Sbjct: 101 LQMVFQDPYKSLDPL-MPVGDQVAEPLVIHGLARG----EEARRRAVEMLETVGLTPGRE 155 Query: 392 HVW--VNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGIDIATKXXXXXXXXXXXXQ-GX 448 W + LSGG +Q+V +A+ L +P +++ DEP ID++ + + G Sbjct: 156 FYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTGA 215 Query: 449 XXXXXXXXXXXXXGMADRVVVFHEGKVTGVFDARA 483 +ADR+ V + GK+ V + R+ Sbjct: 216 TIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRS 250 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 79.7 bits (195), Expect = 1e-16 Identities = 63/240 (26%), Positives = 113/240 (47%), Gaps = 10/240 (4%) Query: 6 LELKDVSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLE 65 + ++D+++ Y G L GV+ R + +IG NGAGK+T +K + G++ P +GR+FL+ Sbjct: 3 VRVEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLD 62 Query: 66 GKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRAA 125 G E + + AG + A ++V E + S + L RA Sbjct: 63 GFEATGRPEMVGRYAGYVPQNPSAPKLSPMTVREFVETS-------LRLRGVTRARERAV 115 Query: 126 AILEELGVPLDT-RTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFG 184 +L LG+ + + + +LS Q V IA+A+ ++++MDEP +S+ ++ Sbjct: 116 EVLHTLGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIAR 175 Query: 185 IIRDLKASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRETSREEIIRMMIGRKI 244 II L A V+ SH + D V+ + + G E RE+++R + G + Sbjct: 176 IIAGL-ARERLVLMTSHDPSLLLGHTDIIVVI-NRDLIASGPPEEVYREDVLRRVYGESV 233 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 79.3 bits (194), Expect = 2e-16 Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 13/247 (5%) Query: 6 LELKDVSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSG--VLTPTKGRIF 63 LE+K ++ + L+ V F ++ GEVHA++G NG+GKS+L ++ G + +G I Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 64 LEGKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENI--FMSSPVYAGRVPLLSWKEMH 121 L+G+ + P + GI + Q+ P + ++ I F++ + A + + ++ Sbjct: 63 LDGESIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKIV 122 Query: 122 RRAAAILEELGVPLD--TRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREV 179 +R +LG+ + R S E++ E+ +A+ +IVI+DEP S L + Sbjct: 123 KRMYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGL 182 Query: 180 EDLFGIIRDLKASGTGVVFISHKFEEIEEI-ADHFTVLRDGQYVGEG------EVRETSR 232 + + I+ L+ SG GV+ I+H + + D TVL G + G +V E Sbjct: 183 KIVAEFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGSVLARGGAELARQVEEKGY 242 Query: 233 EEIIRMM 239 ++ RM+ Sbjct: 243 AQLYRML 249 Score = 43.5 bits (101), Expect = 1e-05 Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 26/187 (13%) Query: 260 LEVRNLS----REGVFHDVSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWG--SGEVR 313 LEV+ L+ + V + V F+++ GE+ G GSG++ + I G + + G++ Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 314 FRGETVRFRSLREAMRRGIVYVPEDR-QLQGCILNMSI---------CENITLPLLTALH 363 GE+++ E +GI +D Q+ G L+ I ++++ P + Sbjct: 63 LDGESIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKIV 122 Query: 364 KRGWIDXXXXXXXXXXXXXXLEVKAPHVHVWVNALSGGNQQKVVLAKWLAAQPSLLILDE 423 KR + E+ V+V SGG +++ L + + P ++ILDE Sbjct: 123 KRMY-------EYATKLGLDREILNREVNV---GFSGGEKKRSELLQAMIFDPKIVILDE 172 Query: 424 PTRGIDI 430 P G+DI Sbjct: 173 PDSGLDI 179 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 79.0 bits (193), Expect = 3e-16 Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 13/229 (5%) Query: 5 LLELKDVSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFL 64 +LE + V Y G LD V + +GE L+G NGAGK+TL+K+ G+ GR+ L Sbjct: 4 VLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLL 63 Query: 65 EGKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRA 124 G + + P + G+ V+ + + + V E + ++ + + W Sbjct: 64 NGLD-PWREP--RAREGVGVVFERPNLPSSMPVVEFLESAAAIIGSSPSRVDW------- 113 Query: 125 AAILEELGVPLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFG 184 + G+ LS +Q IA AL R ++ DEPTS+L E ++ Sbjct: 114 --AIRAAGLEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLR 171 Query: 185 IIRDL-KASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRETSR 232 ++ L + G ++ SH E+ +A VL G+ EG + R Sbjct: 172 LLARLNREHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDLFR 220 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 79.0 bits (193), Expect = 3e-16 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 15/205 (7%) Query: 20 ALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLEGKEVAFGSPLDAQK 79 A V F G + ++G NGAGK+TL+K + G++ P+ G I +EG ++ + Sbjct: 19 AYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVEG--------VNPRS 69 Query: 80 AGIAVIHQEAAVFPDLSVAENIFMSSPVYA----GRVPLLSWKEMHRRAAAILEELGVPL 135 G + P+L V ++P R+ + E RA LE +G+ Sbjct: 70 PGFEKLLPRIGYVPELPVVP--LWTTPCILLETLARLEGYTSVEARVRAREALEVVGLAG 127 Query: 136 DTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFGIIRDLKASGTG 195 + TP+ LS R+ V +A+A ++++DEP S L V + ++R + G Sbjct: 128 ECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAREGAT 187 Query: 196 VVFISHKFEEIEEIADHFTVLRDGQ 220 V+ SH E+E+IA H VL+ Q Sbjct: 188 VIVSSHILRELEDIATHVLVLKTDQ 212 Score = 44.3 bits (103), Expect = 7e-06 Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 15/161 (9%) Query: 271 FHDVSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWGSGEVRFRGETVRFRSLREAMRR 330 + +V F G ILG G G+G+T +++ I G+ +GE+ G R + + R Sbjct: 20 YRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVEGVNPRSPGFEKLLPR 78 Query: 331 GIVYVPEDRQLQGCILNMSICENITLPLLTALHKRGWIDXXXXXXXXXXXXXXLEVK--A 388 I YVPE + + T P + L ++ LEV A Sbjct: 79 -IGYVPE----------LPVVPLWTTPCIL-LETLARLEGYTSVEARVRAREALEVVGLA 126 Query: 389 PHVHVWVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGID 429 + LS G +++V++A+ + LL+LDEP G+D Sbjct: 127 GECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLD 167 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 79.0 bits (193), Expect = 3e-16 Identities = 112/452 (24%), Positives = 172/452 (38%), Gaps = 94/452 (20%) Query: 29 RQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLEGKEVAFGSPLDAQKAGIAVIHQE 88 R+G+V L+G NG GK+T ++I++G L P GR+ EG E + L + + Sbjct: 104 REGQVVGLLGRNGTGKTTALRILAGELKPNLGRV--EGGEPEWDEILKRFRGSELQTYFR 161 Query: 89 AAVFPDLSVAENIFMSSPV---YAGRV-PLLSWKEMHRRAAAILEELGVPLDTRTPVKDL 144 V L VA I V GRV LL + A + E++G+ V+ L Sbjct: 162 KLVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGVALELAEQVGLDKVFDRDVRQL 221 Query: 145 STAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFGIIRDLKASGTGVVFISHKFE 204 S E Q + I L+ A + I DEP+S L RE + +I G V+ + H Sbjct: 222 SGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAARPGAYVMVVEHDLA 281 Query: 205 EIEEIADHFTVLRDGQYVGEGEVRETSREEIIRMMIGRKIEQYYPERNSR---------- 254 ++ ++D +L Y G S+ R I ++ Y P N R Sbjct: 282 VLDYVSDLVHIL----YGEPGAYGIVSKPYSTREGINVFLQGYLPAENIRLRKEPILFRK 337 Query: 255 ---------PG----------------EVVLEVRNL-SREGVFHDVSFEVRRGEILGFFG 288 PG V L+ L S EG + GE++G G Sbjct: 338 PAPEAQPAAPGGGRQASRRRIVGWTGLRVALDGFTLTSGEGALYG-------GEVIGVAG 390 Query: 289 LVGSGRTEVMRCIAGVDAWGSG---------EVRFRGETVRFRSLREAMRRGIVYVPEDR 339 G G+T +R +AG G V ++ + + SL +A ++ Sbjct: 391 PNGIGKTTFVRTLAGALKPVEGAVYPYVEDLRVSYKPQYISPESLPDATVEQVLKAANPA 450 Query: 340 QL-QGCILNMSICENITLPLLTALHKRGWIDXXXXXXXXXXXXXXLEVKAPHVHVWVNAL 398 L G LN+ + + + L L L +R V L Sbjct: 451 ILAPGSWLNLELVKRMRLDKL--LERR-----------------------------VRTL 479 Query: 399 SGGNQQKVVLAKWLAAQPSLLILDEPTRGIDI 430 SGG QKV +A LA + + +LDEP+ +D+ Sbjct: 480 SGGELQKVAVAAALAREADVYLLDEPSAYLDV 511 Score = 53.5 bits (127), Expect = 1e-08 Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 29/179 (16%) Query: 19 LALDGVSFRIRQG-----EVHALIGENGAGKSTLVKIMSGVLTPTKGRI--FLEGKEVAF 71 +ALDG + +G EV + G NG GK+T V+ ++G L P +G + ++E V++ Sbjct: 366 VALDGFTLTSGEGALYGGEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYVEDLRVSY 425 Query: 72 GSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRAAAILEEL 131 + ++ PD +V + + ++P SW + L++L Sbjct: 426 KPQYISPES-----------LPDATVEQVLKAANPAILAPG---SWLNLELVKRMRLDKL 471 Query: 132 GVPLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFGIIRDLK 190 L+ R V+ LS E Q V +A AL A + ++DEP++ L +VE+ G+ R ++ Sbjct: 472 ---LERR--VRTLSGGELQKVAVAAALAREADVYLLDEPSAYL---DVEERVGVARAIR 522 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 78.6 bits (192), Expect = 3e-16 Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 18/219 (8%) Query: 20 ALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTP----TKGRIFLEGKEVAFGSPL 75 A+DGVSF +R+GEV + GE+G+GKSTL + G++ P GRI ++G +V S Sbjct: 24 AVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTSMSEA 83 Query: 76 DAQK----AGIAVIHQEA--AVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRAAAILE 129 + ++ ++++ Q A + P +V I ++ G + E +R +LE Sbjct: 84 ELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRG----VGRHEARQRVYELLE 139 Query: 130 ELGV--PLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFGIIR 187 +G+ + R P +LS ++Q V IA AL IVI DEPT++L + +++ Sbjct: 140 SVGLHRSIADRYP-HELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLK 198 Query: 188 DLK-ASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEG 225 L ++ I+H I E+A+ ++ G+ G Sbjct: 199 KLAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEYG 237 Score = 52.4 bits (124), Expect = 3e-08 Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 5/164 (3%) Query: 274 VSFEVRRGEILGFFGLVGSGRTEVMRCIAGV----DAWGSGEVRFRGETVRFRSLREAMR 329 VSF +RRGE+LG G GSG++ + I G+ G + G V S E +R Sbjct: 28 VSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTSMSEAE-LR 86 Query: 330 RGIVYVPEDRQLQGCILNMSICENITLPLLTALHKRGWIDXXXXXXXXXXXXXXLEVKAP 389 R + + QG + ++ + + L + + + Sbjct: 87 RKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELLESVGLHRS 146 Query: 390 HVHVWVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGIDIATK 433 + + LSGG +Q+VV+A LA +P ++I DEPT +D+ + Sbjct: 147 IADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQ 190 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 76.6 bits (187), Expect = 1e-15 Identities = 55/238 (23%), Positives = 120/238 (50%), Gaps = 19/238 (7%) Query: 21 LDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVL-----TPTKGRIFLEGKEVAFGSPL 75 L G+SF+ + G V A++G +G+GKSTL+++++ ++ +G +++ V P Sbjct: 21 LKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVMKEDPY 80 Query: 76 DAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYA---GRVPLLSWKEMHRRAAAILEELG 132 + ++ ++ QE FP +++ EN+ + ++ + L E + A + +E+ Sbjct: 81 NIRRY-TGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEIVEWALKMAHLWDEVK 139 Query: 133 VPLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSL---SAREVEDLFGIIRDL 189 L LS +RQ + +A+AL + R++++DEPT+++ S ++E I+ Sbjct: 140 DRLSDYP--HQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQ--SIVEYA 195 Query: 190 KASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRE---TSREEIIRMMIGRKI 244 K V+ ++H ++ I+D L +G+ + G +E R E+ + +G ++ Sbjct: 196 KEEMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELVLRPRHELTKKFLGGEV 253 Score = 45.4 bits (106), Expect = 3e-06 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 14/214 (6%) Query: 270 VFHDVSFEVRRGEILGFFGLVGSGRTEVMRCIAGV-----DAWGSGEVRFRGETVRFRSL 324 + +SF+ + G + G GSG++ ++R I + A GEV V Sbjct: 20 ILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVMKEDP 79 Query: 325 REAMR-RGIVYVPEDRQLQGCILNMSICENITL-PLLTALHKRGWIDXXXXXXXXXXXXX 382 R G+V+ Q +M+I EN+ + P L L K Sbjct: 80 YNIRRYTGMVF-----QEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEIVEWALKMAHL 134 Query: 383 XLEVKAPHVHVWVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGID-IATKXXXXXXXX 441 EVK + + + LSGG +Q++ LA+ LA +P +L+LDEPT ID ++T Sbjct: 135 WDEVK-DRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVE 193 Query: 442 XXXXQGXXXXXXXXXXXXXXGMADRVVVFHEGKV 475 + ++D+++ +EG+V Sbjct: 194 YAKEEMATVIIVTHTPQQAARISDQILFLYEGRV 227 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 76.3 bits (186), Expect = 2e-15 Identities = 75/230 (32%), Positives = 110/230 (47%), Gaps = 23/230 (10%) Query: 5 LLELKDVSMMYPGT-LALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIF 63 ++ L+DV YPG L GVS +G + L G G GKST++++ +G+ T G + Sbjct: 3 VVRLRDVWYRYPGGGWVLRGVSLEAPRG-ITLLAGPTGGGKSTILRVAAGLATRIYGG-Y 60 Query: 64 LEGKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRR 123 L G+ A G P+ ++ Q+ +F LS+ + A +P W E R Sbjct: 61 LRGEVEARGKPV--------LVPQDYDLFI-LSLTPREELEYCYEASGLP--PW-EARRE 108 Query: 124 AAAILEELGVP--LDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVED 181 A + EELG+ LD R V LS ERQ V IA AL A +++MDEP + VE Sbjct: 109 AVRLAEELGIEDLLDRR--VSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVES 166 Query: 182 LFGIIRDLKASGTGVVFISHKFEEIEEIADHFTVLRDG--QYVGEGEVRE 229 L ++R L GVV H+ + A ++ DG + +G GE E Sbjct: 167 LIRLLRRLDVE--GVVVAEHRVHYLLPAASSVYLVYDGRAKQLGPGEAVE 214 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 76.3 bits (186), Expect = 2e-15 Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 20/226 (8%) Query: 21 LDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLEGKEVAFGSPLDAQKA 80 L GVSF + G + AL+G NG+GK+TL+++++G++ P++GR+ EV GSP + Sbjct: 22 LRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRV-----EVC-GSPPGRVRR 75 Query: 81 GIAVIHQEAAVFPDLSVAENIFM-----SSPVYAGRVPLLSWKEMHRRAAAILEELGVPL 135 + V P L E + S V GR W+E+ A L E+GV Sbjct: 76 MLGYAPASPEVDPRLKAVEVALLYRYGVSEGVAWGR---RDWEEV----LAALGEMGVGE 128 Query: 136 DTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFGIIRDLKASGTG 195 +LS+ +R+LV +A L R + ++DEP S L + + ++R L+ T Sbjct: 129 LAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRSLRGRAT- 187 Query: 196 VVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRETSREEIIRMMIG 241 +V+ +H AD +LR+G +G E I + G Sbjct: 188 IVYTTHD-PLAAMAADSVIMLREGLLHAQGPPEAVVTPETIEEVYG 232 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 75.9 bits (185), Expect = 2e-15 Identities = 58/217 (26%), Positives = 111/217 (51%), Gaps = 13/217 (5%) Query: 20 ALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLEGKEV--AFGSPLDA 77 A+D V+ I +G+ L+GE+G+GK+T +++ + PT GRIF +G +V G L Sbjct: 51 AVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGLKE 110 Query: 78 QKAGIAVIHQEAAVFPDLSVAENIF--MSSPVYAGRVPLLSWKEMHRRAAAILEELGVPL 135 + +I Q+ + L+ + IF ++ P+ +V + ++ ++L ++G+ Sbjct: 111 FRRRAQIIFQDP--YGSLNPRKTIFNLIAEPI---KVHGIKVGDLQEYIVSLLYQVGLNE 165 Query: 136 D--TRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFGIIRDLKAS- 192 R P + S +RQ + IA+ L + +++DEPTS+L + +++DL+ Sbjct: 166 THLYRYP-HEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKY 224 Query: 193 GTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRE 229 +FISH + ++D+ V+ G+ V GE E Sbjct: 225 SLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEE 261 Score = 53.5 bits (127), Expect = 1e-08 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 12/165 (7%) Query: 273 DVSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWGSGEVRFRGETV---RFRSLREAMR 329 +V+ + RG+ LG G GSG+T R I ++ G + F G V R R L+E R Sbjct: 54 NVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGLKEFRR 113 Query: 330 RG-IVYVPEDRQLQGCILNMSICENITLPLLTALHKRGWIDXXXXXXXXXXXXXXLEVKA 388 R I++ L +I I P+ K I + + Sbjct: 114 RAQIIFQDPYGSLNP---RKTIFNLIAEPI-----KVHGIKVGDLQEYIVSLLYQVGLNE 165 Query: 389 PHVHVWVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGIDIATK 433 H++ + + SGG +Q++ +A+ LA +P ++LDEPT +D++ + Sbjct: 166 THLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQ 210 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 75.9 bits (185), Expect = 2e-15 Identities = 71/248 (28%), Positives = 120/248 (48%), Gaps = 25/248 (10%) Query: 4 PLLELKDVSMM---YPGTL-ALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTK 59 P++E++++ + Y G + A++ VSFRI +GE + L+GE G GKS + ++ ++ P Sbjct: 8 PIIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYP-P 66 Query: 60 GRIFLEGKEVAFGSP--------LDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGR 111 GRI +EGK + P LD ++ + A +F D S A + + G Sbjct: 67 GRI-VEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGE 125 Query: 112 VPLL-----SWKEMHRRAAAILEELGVPLDTRTPVK----DLSTAERQLVEIAKALTHRA 162 L S +E RRA +L+ + +P D VK +LS +Q I +L++R Sbjct: 126 TMLAHGRVRSLREGVRRAVGVLKTVLMP-DPEKRVKSYPHELSGGMKQRGVIGISLSNRP 184 Query: 163 RIVIMDEPTSSLSAREVEDLFGIIRDLKAS-GTGVVFISHKFEEIEEIADHFTVLRDGQY 221 +++I DEPT++L + ++ LK G ++ I+H + E D V+ G Sbjct: 185 KLLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNI 244 Query: 222 VGEGEVRE 229 V E V E Sbjct: 245 VEEAPVDE 252 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 72.0 bits (175), Expect = 3e-14 Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 30/249 (12%) Query: 1 METPLLELKDVSMMY---PGTL-ALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLT 56 M +L ++D+++ Y G + ALDGV + QGE+ A++GE+G GKSTL + ++ +L Sbjct: 1 MSEIVLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILP 60 Query: 57 PT----KGRIFLEGKEVAFGSPLDAQKAG---IAVIHQE--AAVFPDLSVAENIFMSSPV 107 KG I L + G+ +D + + I + + +F D S A SPV Sbjct: 61 SNAVIEKGSIIL---NLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAA-----LSPV 112 Query: 108 YAGRVPLLSW-----KEMHRRAAAILEELGVPLDTRTPVK---DLSTAERQLVEIAKALT 159 + + + + + + A IL++L +P K +LS +Q + IA +L Sbjct: 113 HKVKKQVTDHVSGEKRRVEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLI 172 Query: 160 HRARIVIMDEPTSSLSAREVEDLFGIIRDLKAS-GTGVVFISHKFEEIEEIADHFTVLRD 218 R RI+I DEPT++L + ++ L+ T ++ I+H EIAD V+ Sbjct: 173 TRPRIIIADEPTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYA 232 Query: 219 GQYVGEGEV 227 G V +V Sbjct: 233 GHVVEVADV 241 Score = 52.4 bits (124), Expect = 3e-08 Identities = 60/244 (24%), Positives = 106/244 (43%), Gaps = 26/244 (10%) Query: 257 EVVLEVRNLS-----REGVFH---DVSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWG 308 E+VL +R+L+ R+GV + V +V +GEIL G G G++ + R IA + Sbjct: 3 EIVLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARI--LP 60 Query: 309 SGEVRFRGETVRFRSLREAMRRGIVYVPEDR--QLQGCILNMSICENITLPLLTALHK-R 365 S V +G + +L +V + ED +++G I++M + L+ +HK + Sbjct: 61 SNAVIEKGSIIL--NLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAA--LSPVHKVK 116 Query: 366 GWIDXXXXXXXXXXXXXXLEV------KAPHVHV--WVNALSGGNQQKVVLAKWLAAQPS 417 + E+ APH+ + + + LSGG +Q++V+A L +P Sbjct: 117 KQVTDHVSGEKRRVEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPR 176 Query: 418 LLILDEPTRGIDIATKXXXXXXXXXXXXQ-GXXXXXXXXXXXXXXGMADRVVVFHEGKVT 476 ++I DEPT +D+ + + +ADR+ V + G V Sbjct: 177 IIIADEPTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVV 236 Query: 477 GVFD 480 V D Sbjct: 237 EVAD 240 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 72.0 bits (175), Expect = 3e-14 Identities = 68/268 (25%), Positives = 122/268 (45%), Gaps = 57/268 (21%) Query: 6 LELKDVSMMYPGTL-----------ALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGV 54 L L DV + +P T A+DGVS +++GE+ ++GE+G+GK+TL K + G+ Sbjct: 4 LALHDVRVYFPITTFYLKKVIGYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGL 63 Query: 55 LTPTKGRIFLE---GKEVAFGSPLDAQKAG------------------------------ 81 P G +F++ G+ S +A K G Sbjct: 64 HRPFTGHVFIDIDKGELEEAVSIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKK 123 Query: 82 ----IAVIHQE--AAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRAAAILEELGVPL 135 + ++ Q+ +++ P + V E + PV + S + + RR +LE +G+ Sbjct: 124 FRRKVQMVQQDPYSSLNPRMKVGE--IIGEPVRVHGIEKSS-EGVKRRVIEVLEAVGLGK 180 Query: 136 D--TRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFGIIRDL-KAS 192 + R P +LS +RQ V IA+AL +I+++DEPTS+L + ++R+L K Sbjct: 181 EFADRYPY-ELSGGQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKY 239 Query: 193 GTGVVFISHKFEEIEEIADHFTVLRDGQ 220 G + I+H + ++ V+ G+ Sbjct: 240 GLTYLLITHDISVVRYMSSSVVVMYSGK 267 Score = 43.1 bits (100), Expect = 2e-05 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 398 LSGGNQQKVVLAKWLAAQPSLLILDEPTRGIDIATKXXXXXXXXXXXXQ-GXXXXXXXXX 456 LSGG +Q+V +A+ LA P +L+LDEPT +D++ + + G Sbjct: 190 LSGGQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHD 249 Query: 457 XXXXXGMADRVVVFHEGKV 475 M+ VVV + GK+ Sbjct: 250 ISVVRYMSSSVVVMYSGKI 268 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 70.9 bits (172), Expect = 7e-14 Identities = 57/236 (24%), Positives = 109/236 (46%), Gaps = 22/236 (9%) Query: 4 PLLELKDVSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIF 63 P +E + V G L VS + +G V+ ++G NGAGK+TL + + G+ +GR+ Sbjct: 7 PAVEAEGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVA 66 Query: 64 LEGKEVAFGSPLDAQKAG------IAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSW 117 L G+ V ++AG +A + ++ + +++ E + + + +Y + Sbjct: 67 LLGEPV--------ERAGGSLFRRVAYLPEDGEPYRNMTGHEFLRLYASIYG-----VED 113 Query: 118 KEMHRRAAAILEELGVPLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAR 177 E + A+ L LG L R V+ S R+ + +A L + + ++DEPT+ L Sbjct: 114 LEGYLEEASRLSGLGGRLGER--VRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPV 171 Query: 178 EVEDLFGIIRDL-KASGTGVVFISHKFEEIEEIADHFTVLRDGQYVGEGEVRETSR 232 + ++++ + G V+ SH E+E + T++ G+ V G E R Sbjct: 172 YSVGIRRLLKEYSERHGVTVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGEAVR 227 Score = 54.7 bits (130), Expect = 5e-09 Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 17/169 (10%) Query: 263 RNLSREGVFHDVSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWGSGEVRFRGETVRFR 322 + L V DVS V RG + G G G+G+T + R + G+ G V GE V R Sbjct: 16 KRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALLGEPVE-R 74 Query: 323 SLREAMRRGIVYVPEDRQLQGCILNMSICENITL--PLLTALHKRGWIDXXXXXXXXXXX 380 + RR + Y+PED + NM+ E + L + G+++ Sbjct: 75 AGGSLFRR-VAYLPEDGE---PYRNMTGHEFLRLYASIYGVEDLEGYLE----------E 120 Query: 381 XXXLEVKAPHVHVWVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGID 429 L + V + S G ++++++A LA +PSL +LDEPT G+D Sbjct: 121 ASRLSGLGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLD 169 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 70.5 bits (171), Expect = 9e-14 Identities = 68/272 (25%), Positives = 124/272 (45%), Gaps = 28/272 (10%) Query: 5 LLELKDVSMMY---PGTL-ALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTP--- 57 +L+++D+ + Y G + A+DGVS + +GE +++GE+G+GKSTL + ++ P Sbjct: 3 VLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGR 62 Query: 58 -TKGRIFLEGKEV--AFGSPLDAQKA-GIAVIHQEAAVFPD------LSVAENIFMSSPV 107 GRI G ++ G L + I ++ Q+ + D +AE++ Sbjct: 63 IVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLA 122 Query: 108 YAGRVPLLSWKEMHRRAAAILEELGVPLDTRTPV-KDLSTAERQLVEIAKALTHRARIVI 166 +G E A LE +G+P D + LS +RQ V IA A+ +I+I Sbjct: 123 SSG-------SEAESMAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILI 175 Query: 167 MDEPTSSLSAREVEDLFGIIRDLKAS-GTGVVFISHKFEEIEEIADHFTVLRDGQYVGEG 225 DEPT++L + +++ L+ G V+ ++H E +D V+ G+ V G Sbjct: 176 ADEPTTALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIG 235 Query: 226 EVRETSREEI--IRMMIGRKIEQYYPERNSRP 255 + I M+ + + + +R +P Sbjct: 236 PAEDVVSNPIHPYTEMLIKSVPDPWEDREVKP 267 Score = 42.7 bits (99), Expect = 2e-05 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%) Query: 393 VWVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGIDIATKXXXXXXXXXXXXQ-GXXXX 451 V+ + LSGG +Q+V +A +A +P +LI DEPT +D+ + + G Sbjct: 148 VYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKIMDLMKKLQEERGLTVM 207 Query: 452 XXXXXXXXXXGMADRVVVFHEGKVTGVFDARACTSEEI 489 +DR+ V + G++ + A S I Sbjct: 208 LVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDVVSNPI 245 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 67.4 bits (163), Expect = 8e-13 Identities = 69/245 (28%), Positives = 102/245 (41%), Gaps = 48/245 (19%) Query: 20 ALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLEGKEVAFGSPLDAQK 79 A+DGVSF I +GEV L+GE+G GK+T K + ++ T GR+F + K+ + ++ Sbjct: 49 AVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLE---ELER 105 Query: 80 AGIA--------VIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWK------------- 118 G+ ++ F L I P Y P + K Sbjct: 106 RGVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDP-YGSLNPRFTIKRILEDPLLIHSIG 164 Query: 119 ---EMHRRAAAILEELGVPLDTRTPVKD--------LSTAERQLVEIAKALTHRARIVIM 167 E A +LE + + TP D LS +RQ V IA+A +V+ Sbjct: 165 NAREREEMVARMLEAVKL-----TPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVA 219 Query: 168 DEPTS----SLSAREVEDLFGIIRDLKASGTGVVFISHKFEEIEEIADHFTVLRDGQYVG 223 DEP S S+ A +E L G L GT ++FI+H I D V+ G+ V Sbjct: 220 DEPVSMLDVSIRAEILELLLGFREKL---GTSLLFITHDLAVARYICDRIAVMYLGKIVE 276 Query: 224 EGEVR 228 G+ R Sbjct: 277 TGDAR 281 Score = 46.6 bits (109), Expect = 1e-06 Identities = 54/234 (23%), Positives = 87/234 (37%), Gaps = 30/234 (12%) Query: 274 VSFEVRRGEILGFFGLVGSGRTEVMRCIAGVDAWGSGEVRFRGETVRFRSLREAMRRGIV 333 VSF + RGE+ G G G+T + I + G V F+ + L E RRG+ Sbjct: 53 VSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKK---EVLEELERRGVK 109 Query: 334 ----------------YVPEDRQLQGCILNM--SICENITL------PLLTALHKRGWID 369 + P R+LQ + S+ T+ PLL +H G Sbjct: 110 SLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLL--IHSIGNAR 167 Query: 370 XXXXXXXXXXXXXXLEVKAPHVHVWVNALSGGNQQKVVLAKWLAAQPSLLILDEPTRGID 429 L + + + + LSGG +Q+V +A+ PSL++ DEP +D Sbjct: 168 EREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSMLD 227 Query: 430 IATKXXXXXXXXXXXXQ-GXXXXXXXXXXXXXXGMADRVVVFHEGKVTGVFDAR 482 ++ + + G + DR+ V + GK+ DAR Sbjct: 228 VSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDAR 281 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 66.6 bits (161), Expect = 1e-12 Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 25/221 (11%) Query: 5 LLELKDVSMMYPGTLALDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFL 64 LL L++V M G L GVS + GE + G NG+GK+TL+++ +G+ P++GR Sbjct: 4 LLRLENVWKMLGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGR--- 60 Query: 65 EGKEVAFGSPLDAQKAGIAVIHQEAAVFPDLSVAENIFMSSPVYAGRV---PLL--SWKE 119 V++G P + + + V+ DL+V EN+ S ++ G + PL +W+ Sbjct: 61 ----VSWGCP-RGPRGCVGYVGHTPMVYGDLTVWENVEFFSSLHGGSLGDYPLAAEAWRL 115 Query: 120 MHRRAAAILEELGVPLDTRTPVKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREV 179 + LE+ G L LS R+ +++ +AL R++++DE + L Sbjct: 116 LG------LEKYGSHL-----ASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGAS 164 Query: 180 EDLFGIIRDLKASGTGVVFISHKFE-EIEEIADHFTVLRDG 219 E L ++R G ++ + E +A L+DG Sbjct: 165 EALSRLLRLALGEGLALLMTTPLLEPRYLGLASRVYTLQDG 205 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 56.2 bits (134), Expect = 2e-09 Identities = 57/219 (26%), Positives = 99/219 (45%), Gaps = 35/219 (15%) Query: 21 LDGVSFRIRQGEVHALIGENGAGKSTLVKIMSGVLTPTKGRIFLEGKEVAFGSPLDAQKA 80 L V+ I +G V A++G NG+GK+TL+K+ + +L P +G + EG ++ Sbjct: 7 LRDVTLSIPRG-VTAILGANGSGKTTLLKLAARLLKPDRGSV--EG----------PRRV 53 Query: 81 GIAVIHQEAAVFPDLSVAENIFMSSPVYAGRVPLLSWKEMHRRAAAILEELGVPLDTRTP 140 G A + F +VAE++ ++ GR A +L E G+ + Sbjct: 54 G-AALQNPYLGFLGPTVAEDLARTA---GGR----------GEALKLLREAGLEYASERS 99 Query: 141 VKDLSTAERQLVEIAKALTHRARIVIMDEPTSSLSAREVEDLFGIIRDLKASGTGVVFIS 200 LS E +++ + A++ V++DEPTS L L +I L G V+ Sbjct: 100 PYTLSMGEARILSVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLIARL---GVPVLVAG 156 Query: 201 HKFEEIEEIADHFTVLRDGQYVGEGEVRETSREEIIRMM 239 H + +A +LRDG+ G++ E ++RM+ Sbjct: 157 HDIDFAAAVAGWAVILRDGRVRVSGDM-----ERVLRML 190 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 491,010 Number of Sequences: 1700 Number of extensions: 22169 Number of successful extensions: 282 Number of sequences better than 1.0e-04: 40 Number of HSP's better than 0.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 94 Number of HSP's gapped (non-prelim): 107 length of query: 502 length of database: 492,079 effective HSP length: 81 effective length of query: 421 effective length of database: 354,379 effective search space: 149193559 effective search space used: 149193559 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718524|ref|YP_003874056.1| transporter [Spirochaeta thermophila DSM 6192] (328 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 239,307 Number of Sequences: 1700 Number of extensions: 8083 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 328 length of database: 492,079 effective HSP length: 77 effective length of query: 251 effective length of database: 361,179 effective search space: 90655929 effective search space used: 90655929 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718525|ref|YP_003874057.1| transporter [Spirochaeta thermophila DSM 6192] (334 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430861|ref|NP_146935.2| ABC transporter permease [Aeropyru... 43 1e-05 gi|14601324|ref|NP_147859.1| ABC transporter permease [Aeropyrum... 42 3e-05 gi|118431932|ref|NP_148710.2| ABC transporter permease [Aeropyru... 41 4e-05 >gi|118430861|ref|NP_146935.2| ABC transporter permease [Aeropyrum pernix K1] Length = 277 Score = 43.1 bits (100), Expect = 1e-05 Identities = 41/182 (22%), Positives = 79/182 (43%), Gaps = 11/182 (6%) Query: 56 SIIALSMALVIITGSIDISVGSIVALSSFCMGLVASYXXXXXXXXXXXXXXXXXXXMLNG 115 S+ AL A++ TG +++ V ++A+ + +G +A L+ Sbjct: 13 SLAALGEAVLERTGRVNLGVDGLMAVGA-AVGALAGVETGSLLAGLAAGALAGGVGSLS- 70 Query: 116 FLVGYLRIPAIAVTIGTMSFFRGIPQGILGDKAFTTYPEEFAWLGQGYVGGTLVPFQLVL 175 +++ R+ + G + FF GI G L P G V +L + Sbjct: 71 YIILTDRLGVNMIVAGLLVFFAGIGLGDLVGSKIAGRP--------GPVLTSLYTTAATI 122 Query: 176 FLALALMVGLVLHYTVFGRMVYAVGRNEVAAVFSGIPSKRVKFAVFTLNGLFSGISSVLL 235 +A A+ + L+L+ TV G + VG N AA G+P R++ + + GL +G++ ++ Sbjct: 123 GIA-AVALHLILYNTVTGTALRVVGENPAAAKERGVPVWRLRLSAALVQGLSAGLAGYIM 181 Query: 236 TS 237 + Sbjct: 182 VA 183 >gi|14601324|ref|NP_147859.1| ABC transporter permease [Aeropyrum pernix K1] Length = 294 Score = 41.6 bits (96), Expect = 3e-05 Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 12/190 (6%) Query: 56 SIIALSMALVI-ITGSIDISVGSIVALSSFCMGLVASYXXXXXXXXXXXXXXXXXXXM-L 113 S+IAL +V + SI+ +V +V L+++ + + M + Sbjct: 23 SLIALGYNIVYRVNKSINFAVPEVVLLAAYLAWIASIATGNLLAAVAIALAASIAVSMAM 82 Query: 114 NGF----LVGYLRIPAIAVTIGTMSFFRGIPQGI-LGDKAFTTYPEEFAWLGQGYVGGTL 168 F L+G I I T+G +G+ + G+ A + E LG +G Sbjct: 83 ERFVAKPLLGRPPIALIGATLGLFYMLKGVVLIVGKGEVAVLPFYPEVYRLGFLTLGTND 142 Query: 169 VPFQLVLFLALALMVGLVLHY--TVFGRMVYAVGRNEVAAVFSGIPSKRVKFAVFTLNGL 226 V + L ++A++ G+++ + T FG + V + A G+P +R+ A + L GL Sbjct: 143 V---IALLGSIAVLAGIIVLHRKTSFGAAMRGVAEDAEGAAAYGLPVRRLMLAGWALAGL 199 Query: 227 FSGISSVLLT 236 SG++++LL+ Sbjct: 200 VSGLAALLLS 209 >gi|118431932|ref|NP_148710.2| ABC transporter permease [Aeropyrum pernix K1] Length = 359 Score = 41.2 bits (95), Expect = 4e-05 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 18/153 (11%) Query: 171 FQLVLF--LALALMVGLVLHYTVFGRMVYAVGRNEVAAVFSGIPSKRVKFAVFTLNGLFS 228 F +++F LA AL V++ TV G G NE AA G+ RVK A G+ + Sbjct: 195 FPMIVFVSLATALAAWTVIYKTVPGLRYRFAGANEYAAASRGVAVGRVKLASMAAAGVLA 254 Query: 229 GISSVLL----TSRILSTRPNIAQGFELEAITIAVLXXXXXXXXXXXXXXXXXASFVIGF 284 G+ LL + RI ST + G+ E I +A++ AS +G Sbjct: 255 GLGGALLILGHSYRIDSTLSGLF-GYGFEGIGVALI-------GRNNPLGIVAASLFVGD 306 Query: 285 IRFGMGLMNV----PGRVMNLVTGALLIVAIVI 313 + G + V P + ++V GA++ + Sbjct: 307 LASGSERIQVTARIPAELADVVNGAIIFTVAAL 339 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.144 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 283,515 Number of Sequences: 1700 Number of extensions: 10981 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 3 length of query: 334 length of database: 492,079 effective HSP length: 77 effective length of query: 257 effective length of database: 361,179 effective search space: 92823003 effective search space used: 92823003 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718526|ref|YP_003874058.1| L-rhamnose mutarotase [Spirochaeta thermophila DSM 6192] (104 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 108,615 Number of Sequences: 1700 Number of extensions: 3966 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 104 length of database: 492,079 effective HSP length: 64 effective length of query: 40 effective length of database: 383,279 effective search space: 15331160 effective search space used: 15331160 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718527|ref|YP_003874059.1| short chain dehydrogenase [Spirochaeta thermophila DSM 6192] (382 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 441,201 Number of Sequences: 1700 Number of extensions: 21667 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61 Number of HSP's gapped (non-prelim): 0 length of query: 382 length of database: 492,079 effective HSP length: 78 effective length of query: 304 effective length of database: 359,479 effective search space: 109281616 effective search space used: 109281616 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718528|ref|YP_003874060.1| L-rhamnose isomerase [Spirochaeta thermophila DSM 6192] (420 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 432,403 Number of Sequences: 1700 Number of extensions: 18855 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 0 length of query: 420 length of database: 492,079 effective HSP length: 79 effective length of query: 341 effective length of database: 357,779 effective search space: 122002639 effective search space used: 122002639 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718529|ref|YP_003874061.1| hypothetical protein STHERM_c08390 [Spirochaeta thermophila DSM 6192] (122 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.130 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,376 Number of Sequences: 1700 Number of extensions: 2207 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 122 length of database: 492,079 effective HSP length: 67 effective length of query: 55 effective length of database: 378,179 effective search space: 20799845 effective search space used: 20799845 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718530|ref|YP_003874062.1| hypothetical protein STHERM_c08400 [Spirochaeta thermophila DSM 6192] (519 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aero... 62 3e-11 gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad5... 42 4e-05 gi|118431124|ref|NP_147358.2| surface layer protein [Aeropyrum p... 42 5e-05 >gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aeropyrum pernix K1] Length = 791 Score = 62.0 bits (149), Expect = 3e-11 Identities = 83/424 (19%), Positives = 174/424 (41%), Gaps = 42/424 (9%) Query: 76 TGLDGSVETSLSVLEEQTDLIDGQIRALRQQAFSSSLVV-VGIMVTAIXXXXXXTARGMA 134 T ++ + ET+++ + T + A A + + + +G ++ + A Sbjct: 373 TAVETATETTITTITTTTTREAEETEAAEVLAELTEVEIEIGELMEELETLQQKAASANQ 432 Query: 135 RRIYGMLRGIGRLKEGRLSVAFDTRGNDELASIGRSMEEFTRVLRAV--VESMSDTVSAS 192 + +L G L + S+ + R + I + E+ + A+ +S DT A Sbjct: 433 GEVQEILDEAGALIDRASSLLAEARSLLDEGRIAEAKEKIAQAEAALEKADSKLDTAEAI 492 Query: 193 REVRESLSGASVETNAALEKVSAAVKGVEEKMVYLEEXXXXXXXXXXSIVEAVDRLKE-Q 251 EV E + + E A+E+ A+ E K+ + ++ EA++RL+E + Sbjct: 493 LEVVEEYAERARE---AIEEAEEALAKAEAKLQLAAQLSGSE-----AVEEALNRLEEAK 544 Query: 252 IQVQASMVEQSTAAVTEVITTIGSMAAIAREHTSLGEDLVRISKEGKDVFESGFRKMEAV 311 +++A+ S E I A+IA E L E + ++E + V Sbjct: 545 EKLEAAKEAYSNGRYGEAIVLAEEAASIAEEAKELAEKAIEAAQEAVS------EVLNQV 598 Query: 312 VEMAGRIEEMSRIIGNIASQTXXXXXXXXXXXXXXXXXXKGFAVVAEEVRKLAEASSKSS 371 E+ R++++ I +IA + A + E + KL +A +S Sbjct: 599 EELLDRVKDLQEEIEDIAEKAREAGVLTEEIQ----------AAIDEVLGKLDQA--RSL 646 Query: 372 REIADSIREITGAIEGARAGISDTRESFSLLGEKIEEVSAAIVQIAGNLQEAGTGSQQIL 431 E ADS+ + G I+GAR + + R+ + ++ + + Q G+L + ++ Sbjct: 647 LEEADSLAK-EGDIDGARQKLGEARDVIEEAVSMVRDIRSMVEQAIGDLID------ELR 699 Query: 432 SAVTTLRDTSNEIHEDSLQVAEETRRISASVSALEEVVEYVTSAMGRVEEDLREVLDASR 491 + LR+ + E++ ++ + + RR+ E + + A +EE + ++ DA+ Sbjct: 700 RLIEELREKAAELNTEAAMLEAKARRMGD-----REALRLIEEARSNIEEAIEKLQDATD 754 Query: 492 KASD 495 K D Sbjct: 755 KLGD 758 Score = 55.1 bits (131), Expect = 4e-09 Identities = 70/340 (20%), Positives = 138/340 (40%), Gaps = 29/340 (8%) Query: 175 TRVLRAVVESMSDTVSASREVRESLSGASVETNAALEKVS-----AAVKGVEEKMVYLEE 229 T + +T +A EV L+ +E +E++ AA E L+E Sbjct: 384 TTITTTTTREAEETEAA--EVLAELTEVEIEIGELMEELETLQQKAASANQGEVQEILDE 441 Query: 230 XXXXXXXXXXSIVEAVDRLKE-QIQVQASMVEQSTAAVTEVITTIGSMAAIAREHTSLGE 288 + EA L E +I + Q+ AA+ + + + + AI + E Sbjct: 442 AGALIDRASSLLAEARSLLDEGRIAEAKEKIAQAEAALEKADSKLDTAEAILE----VVE 497 Query: 289 DLVRISKEGKDVFESGFRKMEAVVEMAGRI-------EEMSRIIGNIASQTXXXXXXXXX 341 + ++E + E K EA +++A ++ E ++R+ Sbjct: 498 EYAERAREAIEEAEEALAKAEAKLQLAAQLSGSEAVEEALNRLEEAKEKLEAAKEAYSNG 557 Query: 342 XXXXXXXXXKGFAVVAEEVRKLAE----ASSKSSREIADSIREITGAIEGARAGISDTRE 397 + A +AEE ++LAE A+ ++ E+ + + E+ ++ + I D E Sbjct: 558 RYGEAIVLAEEAASIAEEAKELAEKAIEAAQEAVSEVLNQVEELLDRVKDLQEEIEDIAE 617 Query: 398 SFSLLGEKIEEVSAAIVQIAGNLQEAGTGSQQILSAVTTLRDTSNEIHEDSLQVAEETRR 457 G EE+ AAI ++ G L +A + +L +L +I ++ E Sbjct: 618 KAREAGVLTEEIQAAIDEVLGKLDQA----RSLLEEADSLA-KEGDIDGARQKLGEARDV 672 Query: 458 ISASVSALEEVVEYVTSAMGRVEEDLREVLDASR-KASDL 496 I +VS + ++ V A+G + ++LR +++ R KA++L Sbjct: 673 IEEAVSMVRDIRSMVEQAIGDLIDELRRLIEELREKAAEL 712 >gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1] Length = 919 Score = 42.0 bits (97), Expect = 4e-05 Identities = 79/438 (18%), Positives = 164/438 (37%), Gaps = 55/438 (12%) Query: 69 SFFDNALTGLDGSVETSLSVLEEQTDLIDGQIRALRQQAFSSSLVVVGIMVTAIXXXXXX 128 S+ + A+ G ++T +L E +L D AL ++ +G +V + Sbjct: 133 SYIEKAIIISQGGLQTLAEILSEPKELRDLLDAALGYALLKQAISNIGDVVLGVSPDGSP 192 Query: 129 TARGMARRIYGMLRGIGRLKEGRLSVAFDTRGND-ELASIGRSMEEFTRVLRAVVESMSD 187 G + I RL+ G +++ + G D E+ + +EE R + D Sbjct: 193 VKLGS--------KSITRLQSGYMTLRNEVLGVDREIREASKRLEELEREREELERRARD 244 Query: 188 TVSASREVRESLSGASVETNAALEKVSAAVKGVEEKMVYLEEXXXXXXXXXXSIVEAVDR 247 S ++ ++ + G L V++ ++ K+ + SI + +++ Sbjct: 245 LESEAKALQSEI-GKLETMEEMLVNVTSMIRSERSKLDTINTRLRYAESKISSI-DDLEK 302 Query: 248 LKEQIQVQASMVEQSTAAVTEVITTIGSMAAIAREHTSLGEDLVRISKEGKDVFESGFRK 307 + +++ +AS+ + + +A + LG DL I ++ + E R Sbjct: 303 RRAELRAKASLAHE-----------VAELARLQSRLDKLGRDLEMI-RDAVEKLEVSRRL 350 Query: 308 MEAVVEMAGRIEEMSRIIGNIASQTXXXXXXXXXXXXXXXXXXKGFAVVAEEVRKLAEAS 367 E +E A R E + +G ++V R L+E Sbjct: 351 KE--IESARREAE-----NRLLEARSSIKEEQRRYTLLDYRVTRGRSIVTNIRRVLSECR 403 Query: 368 SKS--SREIADSIREITGAIEGARAGISDTRESFSLLGEK---IEEVSAAIVQIAGNLQE 422 SK E +S+ E A+ I+D L ++ +E + +VQ L+E Sbjct: 404 SKDLCGSEKPESVLERLDAV------INDLESKARALDQEASALEAEARRLVQALSMLEE 457 Query: 423 AGTGSQ-----------QILSAVTTLRDTSNEIHEDSLQVAEETRRISASVSALEEV--- 468 +G ++ + + R + + + + + A E + A S L++ Sbjct: 458 SGGSARCPVCGAELPPGRAEAIARHYRHEAERLRKAAKEKAAEAEKARAEASRLQDKRRR 517 Query: 469 VEYVTSAMGRVEEDLREV 486 +E + S + ++EE LRE+ Sbjct: 518 IELLLSRLNQLEEGLREL 535 >gi|118431124|ref|NP_147358.2| surface layer protein [Aeropyrum pernix K1] Length = 1550 Score = 41.6 bits (96), Expect = 5e-05 Identities = 59/359 (16%), Positives = 138/359 (38%), Gaps = 22/359 (6%) Query: 143 GIGRLKEGRLSVAFDTRGND-ELASIGRSMEEFTRVLRAVVESMSDTVSASREVRESLSG 201 GI +K L++ D D +L SI ++ E + + + + ++ E+ E L Sbjct: 1175 GISEVKSIVLAIQDDLTVIDTKLDSIEATVTEINEGVAILQTDLGNLQASVDELTELLQQ 1234 Query: 202 ASVETNAALEKVSAAVKGVEEKMVYLEEXXXXXXXXXXSIVEAVDRLKEQIQ-VQASMVE 260 E L+++S + + + ++ +I+E +D + + +Q + E Sbjct: 1235 TGEEITMKLDEISGDLAEISNGVATIQ-------GDVATILELLDAMNATLTTIQGDVAE 1287 Query: 261 QSTAAVTEVITTIGSMAAIAREHTSLG----EDLVRISKEGKDVFESGFRKMEA-VVEMA 315 T A T ++ ++ + I + T ED V + +G+ + ++A + ++ Sbjct: 1288 IKTTAGT-ILVSVQDLQTIVADSTDAVIKAVEDNVALVLDGQQLILESLDTLDAKITAVS 1346 Query: 316 GRIEEMSRIIGNIASQTXXXXXXXXXXXXXXXXXXKGFAVVAEEVRKLAEASSKSSREIA 375 + E+ I+G+++ + A + + L S I Sbjct: 1347 DGVAEVQTILGDVSVSLEDLVEANATIEEVVVENNQLLATITTSMGTLTADMSTLKDLIE 1406 Query: 376 DSIREITGAIEGARAGISDTRESFSLLGEKIEEVSAAIVQIAGNLQEAGTGSQQILSAVT 435 + + + ISD + E I + AA+ Q+ I S + Sbjct: 1407 SGVNVKLDQVLEDLSTISDQNAQLAAQAEAIAQTLAAV-------QDDTAKITDIQSTLA 1459 Query: 436 TLRDTSNEIHEDSLQVAEETRRISASVSALEEVVEYVTSAMGRVEEDLREVLDASRKAS 494 ++ + +D+ ++ + + + ++ V+ V+SA+ ++E L +V D + AS Sbjct: 1460 SVAGDVASVKQDTSTISSKLDDANGKLDSISSKVDSVSSAVADIQEQLGQVGDTAESAS 1518 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.312 0.128 0.323 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 411,391 Number of Sequences: 1700 Number of extensions: 16274 Number of successful extensions: 103 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 88 Number of HSP's gapped (non-prelim): 9 length of query: 519 length of database: 492,079 effective HSP length: 81 effective length of query: 438 effective length of database: 354,379 effective search space: 155218002 effective search space used: 155218002 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718531|ref|YP_003874063.1| two-component sensor histidine kinase [Spirochaeta thermophila DSM 6192] (607 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.139 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 561,956 Number of Sequences: 1700 Number of extensions: 23391 Number of successful extensions: 76 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76 Number of HSP's gapped (non-prelim): 0 length of query: 607 length of database: 492,079 effective HSP length: 82 effective length of query: 525 effective length of database: 352,679 effective search space: 185156475 effective search space used: 185156475 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718532|ref|YP_003874064.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (494 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 555,796 Number of Sequences: 1700 Number of extensions: 27142 Number of successful extensions: 87 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87 Number of HSP's gapped (non-prelim): 0 length of query: 494 length of database: 492,079 effective HSP length: 81 effective length of query: 413 effective length of database: 354,379 effective search space: 146358527 effective search space used: 146358527 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718533|ref|YP_003874065.1| hypothetical protein STHERM_c08430 [Spirochaeta thermophila DSM 6192] (446 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 476,394 Number of Sequences: 1700 Number of extensions: 21626 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 446 length of database: 492,079 effective HSP length: 80 effective length of query: 366 effective length of database: 356,079 effective search space: 130324914 effective search space used: 130324914 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718534|ref|YP_003874066.1| transporter [Spirochaeta thermophila DSM 6192] (285 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 109 7e-26 gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum... 76 8e-16 gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyru... 57 7e-10 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 109 bits (273), Expect = 7e-26 Identities = 70/212 (33%), Positives = 108/212 (50%), Gaps = 6/212 (2%) Query: 64 INTFIYAVLTSGLKTVLGFIFAAYLVARPLGSGFLQSITFFPSIISTVAVGVTFSGLMHP 123 I+ I+ L L T LG +F AYL+ GS +++I F +I V G+ + Sbjct: 78 IHNIIWMALHIPLVTFLG-LFLAYLLKYTFGSSIVKTIVFIGMVIPMVVGGLIVRFMFDE 136 Query: 124 AFGLINKALAFIGIP--GPDWLGDPHLALLSVSLVDVWRGVGIATVIYIAGIRSIPRSYY 181 G++ +G+ W P L+LLS+ L VW G + +Y A + SIP S+ Sbjct: 137 YVGVVPLVFKALGVDFLAKTWTNYPQLSLLSLILGSVWLWTGFSLTVYSAALGSIPSSFI 196 Query: 182 EAAMIDGATSGQRLLSITLPLSRPAMNTVILLSFIGGLRTFDLIWVMTRGGPGFSSDLIA 241 EAA IDGA I PL RPA V++++ + L+ FD+++V T GGPG SS+++A Sbjct: 197 EAARIDGAGHWHIFWKIVFPLVRPATIIVVVMTMLWDLKIFDIVYVATLGGPGGSSNVLA 256 Query: 242 SIIYKQYQSGFYGLSTAGNVILFIFIALLAVP 273 ++Y QY + A V + + LL +P Sbjct: 257 LVMY-QYMARALDYQAASAVA--VILTLLTLP 285 >gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum pernix K1] Length = 288 Score = 76.3 bits (186), Expect = 8e-16 Identities = 60/247 (24%), Positives = 112/247 (45%), Gaps = 20/247 (8%) Query: 9 WFILPGMVIY-GLFFLFPVLISFPFSFTRWTLTDWYFTGLDNFRMFFSEPSLRIGFINTF 67 W +L ++Y +F +P++ SF +F + F +D F ++ TF Sbjct: 15 WLLLSPTILYLAVFIAYPIIDSFRIAFVKNGSIS--FEAVD-FLLYSPLSEFWSALKYTF 71 Query: 68 IYAVLTSGLKTVLGFIFAAYLVARPLGSGFLQSITFFPSIISTVAVGVTFSGLMHPAFGL 127 + A+L +T+L L R G + + P +S +A G+ + ++ G Sbjct: 72 LLAILVIPTETLLALTAVILLFKRFRGRDAVIYVLVMPLALSDLAAGLIWYSML-TGKGF 130 Query: 128 INKALAFIGIPGPDWLGDP---------HLALLSVSLVDVWRGVGIATVIYIAGIRSIPR 178 +NK L +G+ + DP L L+V L +VWR I VI AG + I + Sbjct: 131 LNKLLLNMGL-----ISDPIIFFGYENRWLTFLAVYLAEVWRSTAIVFVILFAGAQLINK 185 Query: 179 SYYEAAMIDGATSGQRLLSITLPLSRPAMNTVILLSFIGGLRTFDLIWVMT-RGGPGFSS 237 +EAA + GA+ +L I +P+ +P++ +L+ + + F ++W++ R P + Sbjct: 186 EVFEAAEVFGASFYVKLRHILIPMIKPSLQAALLIRTLFAFQVFAVVWILAGRDIPVLAG 245 Query: 238 DLIASII 244 + SI+ Sbjct: 246 EAYYSIV 252 >gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyrum pernix K1] Length = 314 Score = 56.6 bits (135), Expect = 7e-10 Identities = 72/309 (23%), Positives = 124/309 (40%), Gaps = 57/309 (18%) Query: 9 WFILPGMVIYGLFFLFPVLISFPFSFTR---WTLTDWYF--TGLDNFRMFFS----EPSL 59 +F+ P ++I FF P+L++ SFT W + + F GL N+++ +P Sbjct: 11 FFLGPALLIVITFFFLPLLLTVYTSFTNMRNWNVDAYLFDIVGLYNYKVLVHFAKYDPMF 70 Query: 60 RIGFINTFIYAVLTSGLKTVLGFIFAAYLVARPLGSGFLQSITFF--------------- 104 R I T ++ +T LV LG L +TFF Sbjct: 71 RNALITTVVFVAVT--------------LVVNVLGGLTLAILTFFLEERISIHYRLLWLL 116 Query: 105 PSIISTVAVGVTFSGLMHP-AFGLINKALAFIGIPGP--DW------LGDPHLALLSVSL 155 P + + + H A G +N+ L G+ +W LG + + L Sbjct: 117 PRMTPVAVYSLLWYYFFHSDAIGTLNRILLLAGVIDKPINWGSYMLPLGTWWILIFVNGL 176 Query: 156 VDVWRGVGIATVIYIAGIRSIPRSYYEAAMIDGATSGQRLLSITLPLSRPAMNTVILLSF 215 V GV +++ + IRSIP Y AA +DGA++ + I +P+ R + V + Sbjct: 177 V----GVSFGMIVFYSAIRSIPWEYIAAARVDGASNLVIIRRIIVPMIRWHLLFVTVWQM 232 Query: 216 IGGLRTFDLIW------VMTRGGPGFSSDLIASIIYKQYQSGFYGLSTAGNVILFIFIAL 269 + L T+ I+ V+ R S L+ ++ + GL+ A +L + A+ Sbjct: 233 LSLLTTYTHIFLLYEWGVVDRTWGQTWSLLVFNLAFLPVGELRQGLAAAAATVLVVIGAI 292 Query: 270 LAVPLNRVL 278 L + R+L Sbjct: 293 LGLVTLRIL 301 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.146 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 294,775 Number of Sequences: 1700 Number of extensions: 13612 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 3 length of query: 285 length of database: 492,079 effective HSP length: 76 effective length of query: 209 effective length of database: 362,879 effective search space: 75841711 effective search space used: 75841711 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718535|ref|YP_003874067.1| transporter [Spirochaeta thermophila DSM 6192] (275 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 84 5e-18 gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum... 61 3e-11 gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 59 1e-10 gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease... 57 7e-10 gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyru... 52 1e-08 gi|14601088|ref|NP_147614.1| spermidine/putrescine ABC transport... 44 3e-06 gi|14601089|ref|NP_147615.1| spermidine/putrescine ABC transport... 41 3e-05 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 83.6 bits (205), Expect = 5e-18 Identities = 64/279 (22%), Positives = 125/279 (44%), Gaps = 11/279 (3%) Query: 6 RRMLEFLVVVIFTVAFG------VPFLFVIFSAGKSTAEAATMAF-SLPSSPQYLENFRE 58 R++L VV+I +A+G +PF+ + + + E + ++ + ++N+ + Sbjct: 8 RQVLRVDVVLINLLAWGFALVWLLPFIGLFMVSVRPYGEVIVKGWWNIVDATFTMDNYIK 67 Query: 59 VFRAGGGMVLRGFYNSVRLTIFTILVLTVVSAMTGFVLERRRERVGSLILFLIMTGLMLP 118 + V G+ NS+ + + ++ ++ + R + S LFL+ LM Sbjct: 68 AWSYDPYSVSGGYINSLIVALPATVIPVAAASFAAYGFSRFSFPLKSY-LFLVTILLMAL 126 Query: 119 P---AVVPTIWILKGLGLYPTLLSMVMIEVALGFPFAVLLYRAFMISIPRDLDEAALIDG 175 P VVP +LK LGL T ++++ A G + + + F +PR+++EAA +DG Sbjct: 127 PQQIVVVPLFLLLKNLGLINTFPGIILVHSAWGMAWIIFFMKNFFDILPREVEEAARVDG 186 Query: 176 CGPLYLFFRIIFPLLKPVSVTIIILTSINVYNDFVNPLYFLPGAENVTIQLSLYNFQTQF 235 +F++I+ P+ P ++ +L V++ F L FL I + N + + Sbjct: 187 ASDFRIFYKIVLPMSLPGILSASVLQFTWVWSSFFFELIFLIDPSKWVITQRIANMKGTY 246 Query: 236 HTRWNLLFADVLVIAVPPFLFYLFFRRQIVEGMVAGAIK 274 W L+ A + P Y+ +R + G V A K Sbjct: 247 LVDWGLIAAGSVFAMAVPLAVYMLLQRYYIRGFVGWAAK 285 >gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum pernix K1] Length = 270 Score = 61.2 bits (147), Expect = 3e-11 Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 12/217 (5%) Query: 53 LENFREVFRAGGGMVLRGFYNSVRLTIFTILVLTVVSAMTGFVLERRRERVGSLILFLIM 112 L++ + ++ G G F SV + T+ + ++ G+ L R + I+ Sbjct: 54 LDHVKTLWILGAG---EAFLRSVAVGAMTVGISFLLGLPGGYALARYVFPGRDAVKLAII 110 Query: 113 TGLMLPPAVVPTIWILK---GLGLYPTLLSMVMIEVALGFPFAVLLYRAFMISIPRDLDE 169 M P V+ ++ +LK LGL TL+ + + A+ PF V++ + IPRDL+E Sbjct: 111 ATRMFPIIVI-SVSLLKTFFNLGLNDTLIGLALAHTAMALPFVVIITGSIFGGIPRDLEE 169 Query: 170 AALIDGCGPLYLFFRIIFPLLKPVSVTIIILTSINVYNDFVNPLYFLPGAENVTIQLSLY 229 A +I G + +F RI PL P + T + +N+ ++ V L + Sbjct: 170 AGMIFGLSSIMVFLRITLPLAAPGLTAAGMFTFLLSWNE----VFMASVLTLVNRTLPAF 225 Query: 230 NFQTQFHTRWN-LLFADVLVIAVPPFLFYLFFRRQIV 265 + F T + FA ++ +P +F RR +V Sbjct: 226 ILNSAFATPIEPIRFAAAFMLILPALVFMFLARRYLV 262 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 58.9 bits (141), Expect = 1e-10 Identities = 37/128 (28%), Positives = 70/128 (54%), Gaps = 16/128 (12%) Query: 121 VVPTIWILKGLGL---------YP--TLLSMVMIEVALGFPFAVLLYRAFMISIPRDLDE 169 VVP ++ K LG+ YP +LLS+++ V L F++ +Y A + SIP E Sbjct: 140 VVPLVF--KALGVDFLAKTWTNYPQLSLLSLILGSVWLWTGFSLTVYSAALGSIPSSFIE 197 Query: 170 AALIDGCGPLYLFFRIIFPLLKPVSVTIIILT---SINVYNDFVNPLYFLPGAENVTIQL 226 AA IDG G ++F++I+FPL++P ++ ++++T + +++ PG + + L Sbjct: 198 AARIDGAGHWHIFWKIVFPLVRPATIIVVVMTMLWDLKIFDIVYVATLGGPGGSSNVLAL 257 Query: 227 SLYNFQTQ 234 +Y + + Sbjct: 258 VMYQYMAR 265 >gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease ModB [Aeropyrum pernix K1] Length = 261 Score = 56.6 bits (135), Expect = 7e-10 Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 17/168 (10%) Query: 78 TIFTILVLTVVSAMTGFVLERRRERVGSLILFLIMTGLMLPPAVVPTIWIL--------- 128 TI ++L +T+ +A + + R+ R+ LI L + L +PP + T ++ Sbjct: 56 TISSVLAVTLATA-PAYAMARQEGRLTRLISQLHLLLLSIPPVGLGTAALILFTRYPPLN 114 Query: 129 ---KGLGLYPTLLSMVMIEVALGFPFAVLLYRAFMISIPRDLDEAALIDGCGPLYLFFRI 185 + LGL+ + ++++ ++ + P AV + +PR+L+EAA G G L + RI Sbjct: 115 SISETLGLFFSPKAVILAQLLVTTPIAVSMLTGVFSMVPRELEEAAEAYGAGRLQILIRI 174 Query: 186 IFPLLKPVSVTIIILTSINVYNDFVNPLYF---LPGAENVTIQLSLYN 230 + PL P ++ + +T +F L +PG T+ L+LYN Sbjct: 175 VLPLSLPGILSALAVTFFRALGEFGATLVLAGNIPG-RTETLPLALYN 221 >gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyrum pernix K1] Length = 302 Score = 52.4 bits (124), Expect = 1e-08 Identities = 50/223 (22%), Positives = 100/223 (44%), Gaps = 30/223 (13%) Query: 73 NSVRLTIFTI-------LVLTVVSAMTGFVLERRRER-----VGSLILFLIMTGLMLPPA 120 N V +T+ T+ L T+VS + + + R + LI+ G+ L Sbjct: 83 NVVEMTLVTLTVAVGVALTATLVSLLAAYSISRMEFKGRGVFTAGLIMLHAFPGVALIIG 142 Query: 121 VVPTIWILKG-LGL----YPTLLSMVMIEVALGFPFAVLLYRAFMISIPRDLDEAALIDG 175 V I+ LG+ + + +++ AL P A+ L++ F IP +L+ +AL+DG Sbjct: 143 VYMIFRIIGDVLGVLGEEFYAIAYIILARAALEVPMAIWLFKGFFDKIPWELEWSALVDG 202 Query: 176 CGPLYLFFRIIFPLLKPVSVTIIILTSINVYNDFVNPLYFLP--GAENV-----TIQLSL 228 + +++ I+ PL+KP ++I T + + +F+ FL G +++ I + Sbjct: 203 ASRVRVWWSILVPLVKPGIAAVLIFTFLAGWEEFIYFYVFLKPFGIDSLPTFIEEIVAAA 262 Query: 229 YNFQTQFHTRWNLLFADVLVIAVPPFLFYLFFRRQIVEGMVAG 271 N+Q ++ A +P +F++ +R ++E G Sbjct: 263 ENYQL------TIIAAAGTFYLLPTIVFFVLTQRLLLEAYSGG 299 >gi|14601088|ref|NP_147614.1| spermidine/putrescine ABC transporter permease [Aeropyrum pernix K1] Length = 267 Score = 44.3 bits (103), Expect = 3e-06 Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 24/167 (14%) Query: 72 YNSVRLTIFTILVLTVVSAMTGFVLERRRERVGSLILFLIMTGLMLPPAVVPTIWILKGL 131 YNS+ + + + T++ G + RR +VG ++ +M PP V+P I L Sbjct: 61 YNSLAIAAASAVSSTLLGVAAGLAV-RRHGKVG------LVDAIMYPPLVLPEIAEAAAL 113 Query: 132 GLYPTLLSMVMIEVALGFPFAVLLYRAFMISI-----------PRDLDEAALIDGCGPLY 180 LL + ++V LG V+ + AF I+ L++AA G P Sbjct: 114 -----LLFLTALDVDLGLKTVVIGHTAFNIAYVYVVAAPALQRSSSLEDAARTLGATPAR 168 Query: 181 LFFRIIFPLLKPVSVTIIILTSINVYNDFVNPLYFL-PGAENVTIQL 226 I PL P L I + DF+ L+ PG E + I L Sbjct: 169 TLVTITIPLAAPAIYAGFTLAFILSFTDFIKTLFTRGPGIETIPILL 215 >gi|14601089|ref|NP_147615.1| spermidine/putrescine ABC transporter permease [Aeropyrum pernix K1] Length = 257 Score = 41.2 bits (95), Expect = 3e-05 Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 14/198 (7%) Query: 73 NSVRLTIFTILVLTVVSAMTGFVLERR---RERVGSLILFL--IMTGLMLPPAVVPTIWI 127 NS + T L + +++ + + + RER+ L LF+ + ++L + + Sbjct: 61 NSAAVAAATALAVMLLALVPSYYIALEAGGRERIVLLALFVSPFIVDVLLRTLSIKLVLT 120 Query: 128 LKGL--GLYPTLLSMVMIEVALGFPFAVLLYRAFMISIPRDLDEAALIDGCGPLYLFFRI 185 L G+ G T + +V + LG FA A + + R L EAA G G L ++ + Sbjct: 121 LVGVKPGWTATFIGLVYENLPLGILFAF----AGVSGVSRSLVEAARTLGAGRLEVYRSV 176 Query: 186 IFPLLKPVSVTIIILTSINVYNDFVNPLYFLPGAENVTIQLSLYNFQTQFHTRWNLLFAD 245 + PL P ++ + + D+V P L G T+ +Y+ RW+L A Sbjct: 177 VAPLALPWLAAGFVVVFLISFTDYVVP-SLLGGTTGFTVGSLIYHLILS-GDRWDLGSAV 234 Query: 246 VLVIA-VPPFLFYLFFRR 262 L++ + YL FR+ Sbjct: 235 TLMVTLLSAAAAYLVFRQ 252 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.334 0.148 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 268,237 Number of Sequences: 1700 Number of extensions: 11339 Number of successful extensions: 88 Number of sequences better than 1.0e-04: 7 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 82 Number of HSP's gapped (non-prelim): 7 length of query: 275 length of database: 492,079 effective HSP length: 76 effective length of query: 199 effective length of database: 362,879 effective search space: 72212921 effective search space used: 72212921 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718536|ref|YP_003874068.1| alfa-L-rhamnosidase [Spirochaeta thermophila DSM 6192] (896 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,065,690 Number of Sequences: 1700 Number of extensions: 54534 Number of successful extensions: 132 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 132 Number of HSP's gapped (non-prelim): 0 length of query: 896 length of database: 492,079 effective HSP length: 85 effective length of query: 811 effective length of database: 347,579 effective search space: 281886569 effective search space used: 281886569 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718537|ref|YP_003874069.1| transporter [Spirochaeta thermophila DSM 6192] (312 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 51 3e-08 gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 40 6e-05 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 51.2 bits (121), Expect = 3e-08 Identities = 65/294 (22%), Positives = 117/294 (39%), Gaps = 37/294 (12%) Query: 21 GSWQLYVLILPAFLYILIFRYGPMYGLQLAFKSYNVRLGITGSPFVGLEHFRRFLSYYR- 79 G ++ V +LPAF +I IF P V L + + LE + +S Sbjct: 7 GYFKALVFLLPAFTFITIFVIAPSIA--------TVYLSLNVDGHINLEKYAEVVSERSP 58 Query: 80 ---------------FGEIFSNTIILGLYKLAVGFPIPILLALSINEVRSPGIKRFLQTV 124 +G + N I + L+ V F + + LA + I ++T+ Sbjct: 59 DKALIMITSRPESPPWGALIHNIIWMALHIPLVTF-LGLFLAYLLKYTFGSSI---VKTI 114 Query: 125 TYAPYFLSVVVVVGIVYQLFSPHYGILTGLIRSLTGKTINIMGT--PEAFRHVFVWTDVW 182 + + +VV IV +F + G++ + ++L + T P+ + VW Sbjct: 115 VFIGMVIPMVVGGLIVRFMFDEYVGVVPLVFKALGVDFLAKTWTNYPQLSLLSLILGSVW 174 Query: 183 QLMGYQAILYLAALSAVPPELYEAAAIDGASKFQRLLHIDIPSLLPTATVLFILEV---S 239 G+ +Y AAL ++P EAA IDGA + I P + P ++ ++ + Sbjct: 175 LWTGFSLTVYSAALGSIPSSFIEAARIDGAGHWHIFWKIVFPLVRPATIIVVVMTMLWDL 234 Query: 240 RIMDISFEKVILLQTPLNLRVSEVLTTYVYKVGILEGYFDFATAIGLFNSIINL 293 +I DI + V L P L Y Y L+ + A+A+ + +++ L Sbjct: 235 KIFDIVY--VATLGGPGGSSNVLALVMYQYMARALD--YQAASAVAVILTLLTL 284 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 40.4 bits (93), Expect = 6e-05 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 4/92 (4%) Query: 199 VPPELYEAAAIDGASKFQRLLHIDIPSLLPTATVLFILEVSRIMDISFEKVILLQTP--- 255 +P E+ EAA +DGAS F+ I +P LP +L+ + + F ++I L P Sbjct: 174 LPREVEEAARVDGASDFRIFYKIVLPMSLPGILSASVLQFTWVWSSFFFELIFLIDPSKW 233 Query: 256 -LNLRVSEVLTTYVYKVGILEGYFDFATAIGL 286 + R++ + TY+ G++ FA A+ L Sbjct: 234 VITQRIANMKGTYLVDWGLIAAGSVFAMAVPL 265 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.145 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 314,488 Number of Sequences: 1700 Number of extensions: 14248 Number of successful extensions: 66 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 66 Number of HSP's gapped (non-prelim): 2 length of query: 312 length of database: 492,079 effective HSP length: 77 effective length of query: 235 effective length of database: 361,179 effective search space: 84877065 effective search space used: 84877065 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718538|ref|YP_003874070.1| transporter [Spirochaeta thermophila DSM 6192] (302 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 83 1e-17 gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum... 51 4e-08 gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyru... 47 8e-07 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 82.8 bits (203), Expect = 1e-17 Identities = 70/247 (28%), Positives = 117/247 (47%), Gaps = 30/247 (12%) Query: 65 SLEGYKAVFKYD--TVITGYLNSLFYMGVGTFINLVVTMTAAYALAQRELLGRTAIMVLF 122 +++ Y + YD +V GY+NSL T I + AAY ++ ++ LF Sbjct: 61 TMDNYIKAWSYDPYSVSGGYINSLIVALPATVIPVAAASFAAYGFSRFSFPLKS---YLF 117 Query: 123 TFTLLFSG-----GIIPFYLVVKNTIGLNNRLD--MVIPNAMSVANLIIARTFIQQNLPS 175 T+L ++P +L++KN +GL N +++ +A +A +I LP Sbjct: 118 LVTILLMALPQQIVVVPLFLLLKN-LGLINTFPGIILVHSAWGMAWIIFFMKNFFDILPR 176 Query: 176 DLREAARIDGSDDFYFFFKIALPLSAPIIGVLTVLYAVGHWNSFFYPFIFLSSKELFPLQ 235 ++ EAAR+DG+ DF F+KI LP+S P I +VL W+SFF+ IFL + Sbjct: 177 EVEEAARVDGASDFRIFYKIVLPMSLPGILSASVLQFTWVWSSFFFELIFLIDPSKW--- 233 Query: 236 IVLRNIVLMNEMGVDSYQNVEYAARVAGLNDLLKFSLIVVASLPVLVIYPFVQRYFVKGI 295 ++ + I M + V++ AG V A L +Y +QRY+++G Sbjct: 234 VITQRIANMKGTYL-----VDWGLIAAG---------SVFAMAVPLAVYMLLQRYYIRGF 279 Query: 296 MIGSIKG 302 + + KG Sbjct: 280 VGWAAKG 286 >gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum pernix K1] Length = 270 Score = 50.8 bits (120), Expect = 4e-08 Identities = 53/214 (24%), Positives = 85/214 (39%), Gaps = 23/214 (10%) Query: 82 YLNSLFYMGVGTFINLVVTMTAAYALAQRELLGRTAIMVLFTFTLLFSGGIIPFYLVVKN 141 +L S+ + I+ ++ + YALA+ GR A+ + T +F +I L+ Sbjct: 69 FLRSVAVGAMTVGISFLLGLPGGYALARYVFPGRDAVKLAIIATRMFPIIVISVSLLKTF 128 Query: 142 -TIGLNNRLD--MVIPNAMSVANLIIARTFIQQNLPSDLREAARIDGSDDFYFFFKIALP 198 +GLN+ L + AM++ ++I I +P DL EA I G F +I LP Sbjct: 129 FNLGLNDTLIGLALAHTAMALPFVVIITGSIFGGIPRDLEEAGMIFGLSSIMVFLRITLP 188 Query: 199 LSAPIIGVLTVLYAVGHWNSFFYPFIFLSSKELFPLQIVLRNIVLMNEMGVDSYQNVEYA 258 L+AP + + + WN F + P I+ N +A Sbjct: 189 LAAPGLTAAGMFTFLLSWNEVFMASVLTLVNRTLPAFIL----------------NSAFA 232 Query: 259 ARVAGLNDLLKFSLIVVASLPVLVIYPFVQRYFV 292 + + F LI LP LV +RY V Sbjct: 233 TPIEPIRFAAAFMLI----LPALVFMFLARRYLV 262 >gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyrum pernix K1] Length = 302 Score = 46.6 bits (109), Expect = 8e-07 Identities = 50/219 (22%), Positives = 92/219 (42%), Gaps = 34/219 (15%) Query: 98 VVTMTAAYALAQRELLGRTAIMVLFTFTLLFSGG--IIPFYLVVKNTIGLNNRLDMVIPN 155 +V++ AAY++++ E GR F G II Y++ + + + L ++ Sbjct: 104 LVSLLAAYSISRMEFKGRGVFTAGLIMLHAFPGVALIIGVYMIFRI---IGDVLGVLGEE 160 Query: 156 AMSVANLIIARTFIQ------------QNLPSDLREAARIDGSDDFYFFFKIALPLSAPI 203 ++A +I+AR ++ +P +L +A +DG+ ++ I +PL P Sbjct: 161 FYAIAYIILARAALEVPMAIWLFKGFFDKIPWELEWSALVDGASRVRVWWSILVPLVKPG 220 Query: 204 IGVLTVLYAVGHWNSFFYPFIFLSSKELFPLQIVLRNIVLMNEMGVDSYQNVEYAARVAG 263 I + + + W F Y ++FL + L + IV ++YQ AA AG Sbjct: 221 IAAVLIFTFLAGWEEFIYFYVFLKPFGIDSLPTFIEEIV----AAAENYQLTIIAA--AG 274 Query: 264 LNDLLKFSLIVVASLPVLVIYPFVQRYFVKGIMIGSIKG 302 L LP +V + QR ++ G +KG Sbjct: 275 TFYL----------LPTIVFFVLTQRLLLEAYS-GGLKG 302 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.142 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 265,867 Number of Sequences: 1700 Number of extensions: 10635 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 3 length of query: 302 length of database: 492,079 effective HSP length: 76 effective length of query: 226 effective length of database: 362,879 effective search space: 82010654 effective search space used: 82010654 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718539|ref|YP_003874071.1| extracellular solute-binding protein [Spirochaeta thermophila DSM 6192] (553 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430849|ref|NP_146914.2| ABC transporter substrate-binding ... 43 2e-05 >gi|118430849|ref|NP_146914.2| ABC transporter substrate-binding protein [Aeropyrum pernix K1] Length = 468 Score = 42.7 bits (99), Expect = 2e-05 Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 26/195 (13%) Query: 24 QGERQAAQKVKITPPGELPI-----VEEPVTLSVFIPSVGFIQDMKTNPMAQWVEQETNV 78 +G ++AA TP E + V E VTL+V P G Q+ + +++E+ NV Sbjct: 61 KGIKEAAGGETTTPVTETEVKTETVVVEKVTLTVIGPWSGKEQEYFMTALEKFMEENPNV 120 Query: 79 KIEWIETSKVDARTKLSVILASGDYP-DIIFGCTDSALSKQDVYRYARQGLFLPLTDLIE 137 I+++ + LSV +G P D++ T A + A++G + +T LI Sbjct: 121 TIKYVPMRAEEVARTLSVQFEAGVTPADVVI--TPWAWW---IVEMAQKGHVIEVTGLIN 175 Query: 138 SQGYFIKELFEAEPWVKDAITYPDGEIYSLPAVFTDDYHMTMRQKFWINKAWLDRLGLKM 197 Y + + + W + +++ +P + M ++ FW K++ + GL Sbjct: 176 EDEY-VGGILDNVKW--------NNKLWGVP------FTMWLKPGFWYKKSFFAKHGLSE 220 Query: 198 PTTIDEFYAVMKAFK 212 P + +EF ++ K Sbjct: 221 PNSWEEFLQLLDQIK 235 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 584,189 Number of Sequences: 1700 Number of extensions: 26316 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 1 length of query: 553 length of database: 492,079 effective HSP length: 81 effective length of query: 472 effective length of database: 354,379 effective search space: 167266888 effective search space used: 167266888 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718540|ref|YP_003874072.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (760 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 794,772 Number of Sequences: 1700 Number of extensions: 38160 Number of successful extensions: 120 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120 Number of HSP's gapped (non-prelim): 0 length of query: 760 length of database: 492,079 effective HSP length: 84 effective length of query: 676 effective length of database: 349,279 effective search space: 236112604 effective search space used: 236112604 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718541|ref|YP_003874073.1| hypothetical protein STHERM_c08510 [Spirochaeta thermophila DSM 6192] (307 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.142 0.482 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 403,988 Number of Sequences: 1700 Number of extensions: 20907 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 0 length of query: 307 length of database: 492,079 effective HSP length: 77 effective length of query: 230 effective length of database: 361,179 effective search space: 83071170 effective search space used: 83071170 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718542|ref|YP_003874074.1| hypothetical protein STHERM_c08520 [Spirochaeta thermophila DSM 6192] (683 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 801,780 Number of Sequences: 1700 Number of extensions: 39116 Number of successful extensions: 91 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91 Number of HSP's gapped (non-prelim): 0 length of query: 683 length of database: 492,079 effective HSP length: 83 effective length of query: 600 effective length of database: 350,979 effective search space: 210587400 effective search space used: 210587400 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718543|ref|YP_003874075.1| beta-1,4-xylanase [Spirochaeta thermophila DSM 6192] (371 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 426,812 Number of Sequences: 1700 Number of extensions: 20726 Number of successful extensions: 68 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 0 length of query: 371 length of database: 492,079 effective HSP length: 78 effective length of query: 293 effective length of database: 359,479 effective search space: 105327347 effective search space used: 105327347 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718544|ref|YP_003874076.1| hypothetical protein STHERM_c08540 [Spirochaeta thermophila DSM 6192] (636 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601325|ref|NP_147860.1| fatty-acid--CoA ligase [Aeropyrum p... 183 1e-47 gi|118431813|ref|NP_148513.2| long-chain-fatty-acid--CoA ligase ... 88 5e-19 gi|118431020|ref|NP_147199.2| medium-chain-fatty-acid--CoA ligas... 80 1e-16 gi|14601327|ref|NP_147862.1| fatty-acid--CoA ligase [Aeropyrum p... 67 2e-12 >gi|14601325|ref|NP_147860.1| fatty-acid--CoA ligase [Aeropyrum pernix K1] Length = 651 Score = 183 bits (465), Expect = 1e-47 Identities = 153/607 (25%), Positives = 269/607 (44%), Gaps = 37/607 (6%) Query: 33 GVFQPTPYREWWSKVKETAAGLKEMGIERGEHVGLISDNRWEWITLDMALLSLGAVDVPR 92 G+++ +R+++ +V A L+ +G+ G+ I+ NR W+ ++ + LG + Sbjct: 46 GIWRRYTWRDYYLRVAYAALALENLGLGPGDTGAFITFNRPSWVIYEVGVQLLGGRAMGI 105 Query: 93 GSDSTAEEIAYILSHAECRRVIIENPALAHKVFSRKEKLGGVSQVILIEGEP-EQCELPE 151 DS ++E+ Y+L + + V++E +V V ++I+ E + Q Sbjct: 106 YRDSLSDEVGYLLDSGDAKFVLVEGQEQLDRVLDSGVD---VDKIIVDEAKGLHQYRGMV 162 Query: 152 GVACTTFAELAARGKEVLAQD-PEMVDREIDQGTGDDLATIIYTSGTTGEPKGVMLPHRS 210 G TF ++ G+++ + + V + + + D + + TSGTTG PK M+ ++ Sbjct: 163 GSKLVTFGDVMRLGRKLYSDGGDQQVKKLMGELEPDMVCGLFTTSGTTGLPKLAMISFKN 222 Query: 211 FIFQIDKLKKPLNVEVGDIFLSILPIWHSFERAVDYILMERGGAVAYSKPVGKILLEDMT 270 + +L V ++S LP E+ + GG L D Sbjct: 223 MLAMAHQLNTVDPVREDWEYVSFLPTAWIGEQMMSIPYHMIGGFKVNFPETPHTLWRDFR 282 Query: 271 KVRPQWLAAVPRVFEGIRNAVYRNVNKGPAVSRVLFHFFVGVGELYAYFSNMFRGLLPDF 330 ++ P ++ + PRV+E I + V+ + R F +G A + +G Sbjct: 283 EIAPHFMFSPPRVWERIAKDIMARVDDADPIKRAAFRLAYKIG-YEAARRRLVKG----- 336 Query: 331 LPRNRILDKVVAFVPLALLAPFRGLGEVLVFRKLKAKLG-GRFKTGVSGGGALPPHVDTF 389 R+R P L L L R + K G R +GG + F Sbjct: 337 --RSR---------PPTLWRALYYLAYWLALRAVLDKAGLKRIVRAYTGGAMIGEDYVIF 385 Query: 390 FQAVGIQVLEGYGLTETGPVLAVRDQKAPMVGTVGPLLDEVEYKVLDEHGNPLPPGHKGV 449 + ++G+ + + YG TE + V TVG L E K+ ++ G Sbjct: 386 YHSLGVNLKQIYGQTEVAGIAVVHPDDDVRPDTVGKPLPLTEVKIAED----------GE 435 Query: 450 LWVKSPQVMLGYYKRPEATAEVLKDGWLNTGDLVRFTHGREFAIVGRAKDTIVLRGGENV 509 + ++SP +M GYYK EATA+ + DGWL TGD+ T ++ RAK+ I+L G V Sbjct: 436 ILMRSPAMMKGYYKNEEATAKTIVDGWLRTGDVGVLTEDGHLKVLDRAKEIIILSDGTKV 495 Query: 510 EPGPIEEKLKESEFIENAVVVGQDQKFLGALIVPNRERIEEYAREKGLSYMEYEDLVEQA 569 P I+ KLK S +I A +VG + +L AL+ + E + +A + + + Y DL ++ Sbjct: 496 APQVIQNKLKFSPYIGEAAIVGSGKPYLAALVNIDFEIVSRWAERRRIPFTSYSDLSQKP 555 Query: 570 EVQEAINDEIQRLISPAQGFKPFERIFRFEVIPKSFEV-GVELTPSLKVKRHVISEMYRE 628 EV + + EI+++ + ERI RF + K F E+T + K++R VI Y Sbjct: 556 EVLQLLKREIEKV---NRRLPEKERIRRFVSLFKEFHPDDEEMTRTRKLRRMVIESRYAG 612 Query: 629 KIERLFS 635 IE ++S Sbjct: 613 LIEAIYS 619 >gi|118431813|ref|NP_148513.2| long-chain-fatty-acid--CoA ligase [Aeropyrum pernix K1] Length = 550 Score = 88.2 bits (217), Expect = 5e-19 Identities = 64/163 (39%), Positives = 79/163 (48%), Gaps = 8/163 (4%) Query: 376 VSGGGALPPHV-DTFFQAVGIQVLEGYGLTETGPVLAVRD-QKAPMVGTVGPLLDEVEYK 433 +SG LP V + F + G ++ EGYGLTET PV V G++G + Sbjct: 313 ISGAEPLPKAVAERFMEITGAKLREGYGLTETSPVTHVNPIMGEARYGSIGIPVPSTVAA 372 Query: 434 VLD-EHGNPLPPGHKGVLWVKSPQVMLGYYKRPEATAEVLKD----GWLNTGDLVRFTHG 488 V D E L PG G L V PQVM GYY RPE +V + WL TGD+ R Sbjct: 373 VADPESPAILEPGQVGELVVSGPQVMKGYYNRPEENEKVFFECCGLRWLRTGDMARMDED 432 Query: 489 REFAIVGRAKDTIVLRGGENVEPGPIEEKLKESEFIENAVVVG 531 F IV R KD I + G +V P IEE L E + A V+G Sbjct: 433 GYFYIVDRKKDIIKYK-GYSVFPREIEEVLYRHECVREAAVIG 474 Score = 65.5 bits (158), Expect = 4e-12 Identities = 65/265 (24%), Positives = 116/265 (43%), Gaps = 32/265 (12%) Query: 44 WSKVKETAAGLKEMGIERGEHVGLISDNRWEWITLDMALLSLGAVDVPRGSDSTAEEIAY 103 WS + + A L+ G+ +G+ VGL N ++ L GA+ P + EI + Sbjct: 46 WSLLSKFAGYLRSRGVGKGDVVGLFLPNSPQFAIAFYGALIAGAIVSPMNVLYSPREIRH 105 Query: 104 ILSHAECR----------RVIIENPALAHKVF--SRKEKLGGVSQVI--LIEGEPEQCEL 149 LS + R RV+ P+ +V ++ L G+ ++ L + P Sbjct: 106 QLSDNKARVLVALDMFKDRVLAGLPSSVEEVLWTGIQDYLPGLKALLYKLFKKPPSP--- 162 Query: 150 PEGVACTTFAELAARGKEVLAQDPEMVDREIDQGTGDDLATIIYTSGTTGEPKGVMLPHR 209 P+G F + A E +D + + +D+A ++YT GTTG PKG ML HR Sbjct: 163 PKGGIHKKFTD---------ALKHEPIDSKPEINPHEDVAALMYTGGTTGTPKGAMLTHR 213 Query: 210 SF---IFQIDKLKKPLNVEVGDIFLSILPIWHSF--ERAVDYILMERGGAVAYSKPVGKI 264 + + QID K V D+F+ LP +H + ++ + + + Y++P + Sbjct: 214 NLLANVLQIDAWFK-RGVRGKDVFVGALPWFHIYGLTAVLNSGVQKAATIIVYARPNIEE 272 Query: 265 LLEDMTKVRPQWLAAVPRVFEGIRN 289 ++ D+ + + VP ++ I N Sbjct: 273 IMRDIERYKATVFHGVPTLYRMIIN 297 >gi|118431020|ref|NP_147199.2| medium-chain-fatty-acid--CoA ligase [Aeropyrum pernix K1] Length = 555 Score = 80.5 bits (197), Expect = 1e-16 Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 16/210 (7%) Query: 376 VSGGGALPPHVDTFFQAVGIQVLEGYGLTETGPVLAVR-------DQKAPMVGTVGPLLD 428 V+GG ALP + + GI+V+ GYG+TET P+L + D+ + T G + Sbjct: 306 VNGGQALPKGLADAARKRGIEVIVGYGMTETAPILTLANVPQKYMDRSEELSLTTGWPVP 365 Query: 429 EVEYKVLD-EHGNPLPPGHK--GVLWVKSPQVMLGYYKRPEATAEVLKDGWLNTGDLVRF 485 VE V D E P+P K G + V++P V YYK PE T + + GW +TGD+ + Sbjct: 366 LVELMVADPETLEPVPKDGKTMGEIVVRTPWVTPEYYKDPEKTEKAWRGGWFHTGDIAVW 425 Query: 486 THGREFAIVGRAKDTIVLRGGENVEPGPIEEKLKESEFIENAVVVGQDQKFLG----ALI 541 T IV R KD I+ GGE + +E + + + V+G G A+I Sbjct: 426 TPEGYIQIVDRDKD-IIKSGGEWISSLRLESLISQHPGVAQVAVIGARHPKWGERPVAII 484 Query: 542 VPNRERIEEYAREKGLSYMEYEDLVEQAEV 571 VP ++ E+ ++ ++ VE+ E+ Sbjct: 485 VPKPGWQDKLTTEEVREWLA-KNFVEKGEI 513 Score = 47.4 bits (111), Expect = 1e-06 Identities = 62/250 (24%), Positives = 103/250 (41%), Gaps = 28/250 (11%) Query: 46 KVKETAAGLKEMGIERGEHVGLISDN-RWEWITLDMALLSLGAVDVPRGSDSTAEEIAYI 104 +++ A L+ +G+ + V + N W + T A + +GAV P EIAYI Sbjct: 52 RIESLANALRALGVSGLDRVATMDWNTHWHYETYFAAPM-MGAVLHPLNVRLAPNEIAYI 110 Query: 105 LSHAECRRVIIENP--ALAHKVFSRKEKLGGVSQVILIEGEPEQCELPEGVACTTFAELA 162 ++HAE + +I+ + LA + V V++++ E P+ +A Sbjct: 111 MNHAEDKVLIVHSDFLKLAEAILPHAPS---VEHVVIVDAESH----PDRIAGRRLHNYE 163 Query: 163 ARGKEVLAQDPEMVDREIDQGTGDDLATIIYTSGTTGEPKGVMLPHRSFIFQIDKLKKPL 222 KE E+D+ A + YTSGTTG PKGV HR + + L L Sbjct: 164 DLIKE---HGGRFEWPELDENRP---AAMGYTSGTTGLPKGVYHSHRMIV--VHALSGAL 215 Query: 223 --------NVEVGDIFLSILPIWHSFERAVDYILMERGGAVAYSKPVG-KILLEDMTKVR 273 V D L I+P++H + Y+ G + + K+LL+ + + Sbjct: 216 ALATRGRRRVTGDDTLLHIVPMFHVLAWGLPYMATLTGMKQVFPGRLDPKVLLDLIVGEK 275 Query: 274 PQWLAAVPRV 283 A VP + Sbjct: 276 VTVTAGVPTI 285 >gi|14601327|ref|NP_147862.1| fatty-acid--CoA ligase [Aeropyrum pernix K1] Length = 529 Score = 66.6 bits (161), Expect = 2e-12 Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 5/153 (3%) Query: 356 GEVLVFRKLKAKLGGR--FKTGVSGGGALPPHVDTFF-QAVGIQVLEGYGLTETGPVLAV 412 G L+F++L LG + +S G LPP + F + GI +L+ YG++E+ + Sbjct: 299 GVPLMFQQL-LDLGATSGLRLAISAGAPLPPELQRRFGRETGIPLLQAYGMSESLILTFQ 357 Query: 413 RDQKAPMVGTVGPLLDEVEYKVLDEHGNPLPPGHKGVLWVKSPQVMLGYYKRPEATAEVL 472 + A + GT+G L VE +L + G PP G L V++P VM G Y+ E ++ Sbjct: 358 TPKIAEIEGTIGVPLPGVEVSLLGDDGLLSPPPGVGELVVQAPWVMKG-YEFEEENSKAF 416 Query: 473 KDGWLNTGDLVRFTHGREFAIVGRAKDTIVLRG 505 DGWL TGD++ T G K I +G Sbjct: 417 IDGWLRTGDVIEITDRGVMFFRGVRKRIIKYKG 449 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 719,280 Number of Sequences: 1700 Number of extensions: 35925 Number of successful extensions: 126 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108 Number of HSP's gapped (non-prelim): 6 length of query: 636 length of database: 492,079 effective HSP length: 83 effective length of query: 553 effective length of database: 350,979 effective search space: 194091387 effective search space used: 194091387 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718545|ref|YP_003874077.1| beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ [Spirochaeta thermophila DSM 6192] (181 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 186,274 Number of Sequences: 1700 Number of extensions: 7724 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 181 length of database: 492,079 effective HSP length: 71 effective length of query: 110 effective length of database: 371,379 effective search space: 40851690 effective search space used: 40851690 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718546|ref|YP_003874078.1| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Spirochaeta thermophila DSM 6192] (158 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 151,020 Number of Sequences: 1700 Number of extensions: 5895 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 158 length of database: 492,079 effective HSP length: 70 effective length of query: 88 effective length of database: 373,079 effective search space: 32830952 effective search space used: 32830952 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718547|ref|YP_003874079.1| pyruvate carboxylase subunit A [Spirochaeta thermophila DSM 6192] (442 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 449,270 Number of Sequences: 1700 Number of extensions: 19969 Number of successful extensions: 76 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76 Number of HSP's gapped (non-prelim): 0 length of query: 442 length of database: 492,079 effective HSP length: 80 effective length of query: 362 effective length of database: 356,079 effective search space: 128900598 effective search space used: 128900598 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718548|ref|YP_003874080.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit beta [Spirochaeta thermophila DSM 6192] (300 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 320,051 Number of Sequences: 1700 Number of extensions: 13907 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 0 length of query: 300 length of database: 492,079 effective HSP length: 76 effective length of query: 224 effective length of database: 362,879 effective search space: 81284896 effective search space used: 81284896 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718549|ref|YP_003874081.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [Spirochaeta thermophila DSM 6192] (325 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 283,123 Number of Sequences: 1700 Number of extensions: 11456 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 325 length of database: 492,079 effective HSP length: 77 effective length of query: 248 effective length of database: 361,179 effective search space: 89572392 effective search space used: 89572392 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718550|ref|YP_003874082.1| cytochrome c biogenesis protein, transmembrane region [Spirochaeta thermophila DSM 6192] (314 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.146 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 194,272 Number of Sequences: 1700 Number of extensions: 6860 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 314 length of database: 492,079 effective HSP length: 77 effective length of query: 237 effective length of database: 361,179 effective search space: 85599423 effective search space used: 85599423 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718551|ref|YP_003874083.1| hypothetical protein STHERM_c08610 [Spirochaeta thermophila DSM 6192] (226 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600438|ref|NP_146952.1| thiol peroxidase [Aeropyrum pernix K1] 52 1e-08 gi|118431925|ref|NP_148697.2| hypothetical protein APE_2568.1 [A... 42 2e-05 gi|14600604|ref|NP_147121.1| thiol peroxidase [Aeropyrum pernix K1] 40 5e-05 >gi|14600438|ref|NP_146952.1| thiol peroxidase [Aeropyrum pernix K1] Length = 163 Score = 52.0 bits (123), Expect = 1e-08 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 16/151 (10%) Query: 85 PSTPVPAPDFMLPLLEGGQVSLSDYRGKVVLLNFW-ATWCPPCRMEMPSIETMVRALK-- 141 P APDF G ++ LSD+RG++V+L F+ P C E ++ + Sbjct: 2 PGVGEQAPDFEGIAHTGEKIRLSDFRGRIVVLYFYPRAMTPGCTREGVRFNELLDEFEKL 61 Query: 142 GEEVVFLAVDVQEQKSQVSSFIKENGYTFPVLLDATGQVARMYAV--------SGIPTTY 193 G V+ ++ D E+ + F +++G+ F ++ D G++ Y V + T+ Sbjct: 62 GAVVIGVSTDSVEKNRK---FAEKHGFRFKLVSDEKGEIGMKYGVVRGEGSNLAAERVTF 118 Query: 194 FIDKEGNVRGKLVGARNWD--AQVVYEAIKR 222 ID+EGN+R L R + A + E +K+ Sbjct: 119 IIDREGNIRAILRNIRPAEKHADLALEEVKK 149 >gi|118431925|ref|NP_148697.2| hypothetical protein APE_2568.1 [Aeropyrum pernix K1] Length = 190 Score = 41.6 bits (96), Expect = 2e-05 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 6/131 (4%) Query: 94 FMLPLLEGGQVSLSDYRGKVVLLNFWATWCPPCRMEMPSIETMVRALKGEEVVFLAVDVQ 153 F L ++G +SL++ G VV+L F A WCP C ++ + K E+ +A+D Sbjct: 45 FSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTE--KYREISVIAIDFW 102 Query: 154 EQKSQVSSFIKENGYTFPVLLDATGQVARMYAVSGIPTTYFIDKEGNVRGKLVGARNWDA 213 ++ + + + GY P D + A G P+ + +G++ K R+ D Sbjct: 103 TAEALKALGLNKPGYPPP---DTPEMFRKFIANYGDPSWIMVMDDGSLVEKF-NVRSIDY 158 Query: 214 QVVYEAIKRAL 224 V+ + L Sbjct: 159 IVIMDKSSNVL 169 >gi|14600604|ref|NP_147121.1| thiol peroxidase [Aeropyrum pernix K1] Length = 110 Score = 40.0 bits (92), Expect = 5e-05 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 6/106 (5%) Query: 90 PAPDFMLPLLEGGQVSLSDYRGKVVLLNFW-ATWCPPCRMEMPSIETMVRALK--GEEVV 146 PAPD + L++G + LS RG+ V+L F+ + P C E + K G EV+ Sbjct: 7 PAPDIEIQLIDGSTIRLSQLRGRSVVLYFYPKAFTPGCTREAIGFNGLYEEFKKLGAEVI 66 Query: 147 FLAVDVQEQKSQVSSFIKENGYTFPVLLDATGQVARMYAVSGIPTT 192 +++D + + F + G F + D G+ + + + P T Sbjct: 67 GVSMDPPGRNRR---FAQNYGVRFRLASDVEGEAFKSFWGAQRPRT 109 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 211,023 Number of Sequences: 1700 Number of extensions: 7938 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 3 length of query: 226 length of database: 492,079 effective HSP length: 74 effective length of query: 152 effective length of database: 366,279 effective search space: 55674408 effective search space used: 55674408 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718552|ref|YP_003874084.1| hypothetical protein STHERM_c08620 [Spirochaeta thermophila DSM 6192] (222 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.147 0.485 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 229,604 Number of Sequences: 1700 Number of extensions: 8732 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 222 length of database: 492,079 effective HSP length: 73 effective length of query: 149 effective length of database: 367,979 effective search space: 54828871 effective search space used: 54828871 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718553|ref|YP_003874085.1| hypothetical protein STHERM_c08630 [Spirochaeta thermophila DSM 6192] (357 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 377,651 Number of Sequences: 1700 Number of extensions: 16906 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 357 length of database: 492,079 effective HSP length: 78 effective length of query: 279 effective length of database: 359,479 effective search space: 100294641 effective search space used: 100294641 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718554|ref|YP_003874086.1| hypothetical protein STHERM_c08640 [Spirochaeta thermophila DSM 6192] (400 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 345,673 Number of Sequences: 1700 Number of extensions: 14543 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 400 length of database: 492,079 effective HSP length: 79 effective length of query: 321 effective length of database: 357,779 effective search space: 114847059 effective search space used: 114847059 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718555|ref|YP_003874087.1| hypothetical protein STHERM_c08650 [Spirochaeta thermophila DSM 6192] (472 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.142 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 434,385 Number of Sequences: 1700 Number of extensions: 17737 Number of successful extensions: 80 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80 Number of HSP's gapped (non-prelim): 0 length of query: 472 length of database: 492,079 effective HSP length: 80 effective length of query: 392 effective length of database: 356,079 effective search space: 139582968 effective search space used: 139582968 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718556|ref|YP_003874088.1| dimethyladenosine transferase [Spirochaeta thermophila DSM 6192] (283 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600800|ref|NP_147322.1| S-adenosylmethionine-6-N',N'-adenos... 92 1e-20 >gi|14600800|ref|NP_147322.1| S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase [Aeropyrum pernix K1] Length = 277 Score = 92.4 bits (228), Expect = 1e-20 Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 8/194 (4%) Query: 10 MRELMARHGLSALKRFGQHFLVRDDVLGRIVQALDLHPGE---QVWEIGPGIGALTAHLL 66 +RE++ GL R GQHFL+ D +G ++ L+ E + EIGPG G++T Sbjct: 17 VREVLGLAGLRPSDRLGQHFLIDDRAVGEFLKPLEKAAAEGIREALEIGPGAGSITLPAA 76 Query: 67 DEGVEVVGFEIDRGFVSILREEFGGAPLTIVEGDVRDTWRTVYATRVPHRVVGNLPYNVA 126 + +V E+D S L A + ++ GD A++ P V N P+N++ Sbjct: 77 EVLDRIVAVELDNRLASAL-SRLAPARVAVITGDGVSH---AAASQAP-LVFSNTPFNLS 131 Query: 127 TSIILDFLEGGLIVPQVFMVQKEVAERMAASVGSSAYGALSVIVATFYRCELLFHVPPTA 186 +I+ + V VQ EVA RM A GS Y LSV+V+ + EL V P A Sbjct: 132 PAIVEALAVNNRVAAAVLGVQYEVARRMTARPGSRDYSRLSVLVSLVFHAELAGVVRPQA 191 Query: 187 FHPRPKVWSSVLRL 200 ++PRP+V ++V+ L Sbjct: 192 YYPRPQVLTAVVTL 205 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 328,080 Number of Sequences: 1700 Number of extensions: 15573 Number of successful extensions: 97 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94 Number of HSP's gapped (non-prelim): 1 length of query: 283 length of database: 492,079 effective HSP length: 76 effective length of query: 207 effective length of database: 362,879 effective search space: 75115953 effective search space used: 75115953 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718557|ref|YP_003874089.1| dihydrodipicolinate synthase [Spirochaeta thermophila DSM 6192] (293 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431304|ref|NP_147671.2| dihydrodipicolinate synthase [Aero... 86 1e-18 >gi|118431304|ref|NP_147671.2| dihydrodipicolinate synthase [Aeropyrum pernix K1] Length = 303 Score = 85.5 bits (210), Expect = 1e-18 Identities = 72/276 (26%), Positives = 119/276 (43%), Gaps = 5/276 (1%) Query: 5 VFTALITPFNKDGSVDYGALRDLVEIQITEGVNGLVPVGTTGESPTVTHEENVKIVEVVV 64 V ++TP + GSVD A L GV+G+ GTTGE + E + V Sbjct: 6 VIVPMVTPL-RGGSVDKNAASWLASRLSESGVDGVFVPGTTGEWYLLDPHERAEAFFAVA 64 Query: 65 DQTKGRVPVIAGTGSNCTDEAIQMTKRAKEIGADATLQVAPYYNKPNQEGFYRHFVTIAE 124 + ++AG +E+ ++ + A GA A + V P Y +P+ + + I Sbjct: 65 SSAIAGLRLVAGVSGYRPEESYRLAEEAAGHGAHAVMAVPPIYFRPSTDFLREFYGEIKR 124 Query: 125 TC-ELPVIVYNIPGRTGKNVEPETILRLAGHPLIAGVKEASGSMAQVMEILA--KRPEGF 181 LP +Y P R G + E + L ++ G+K A + + A +R F Sbjct: 125 RAGGLPTYIYIFPERMGYTLAVEQVESLVEAGVVDGIKATVTDAAYIAGLAAVKERNPEF 184 Query: 182 AVLSGDDNLTLPIVALGGDGVVSVASNIVPRRMSAFVKALLEGRMEEARRSHYELLPLFK 241 VL+G + + GGDGVV SN+ P+ ++L +G +E +L L + Sbjct: 185 EVLAGGLEMLVHTSLSGGDGVVDAYSNVAPKLAVELAESLEKGSVERVAGLQGRVLKLSR 244 Query: 242 AIFIDTNPIPVKYAMTLLSSLSIQEVYRLPLCPLAE 277 + + P +K + +L + EV R PL PL + Sbjct: 245 ILGKRSLPAVLKAVLHVLGAPITGEV-RKPLKPLTQ 279 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 301,551 Number of Sequences: 1700 Number of extensions: 13932 Number of successful extensions: 65 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 1 length of query: 293 length of database: 492,079 effective HSP length: 76 effective length of query: 217 effective length of database: 362,879 effective search space: 78744743 effective search space used: 78744743 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718558|ref|YP_003874090.1| dihydrodipicolinate reductase [Spirochaeta thermophila DSM 6192] (251 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 268,920 Number of Sequences: 1700 Number of extensions: 12133 Number of successful extensions: 48 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48 Number of HSP's gapped (non-prelim): 0 length of query: 251 length of database: 492,079 effective HSP length: 75 effective length of query: 176 effective length of database: 364,579 effective search space: 64165904 effective search space used: 64165904 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718559|ref|YP_003874091.1| phosphate acetyltransferase [Spirochaeta thermophila DSM 6192] (344 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.132 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 328,373 Number of Sequences: 1700 Number of extensions: 13827 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 344 length of database: 492,079 effective HSP length: 78 effective length of query: 266 effective length of database: 359,479 effective search space: 95621414 effective search space used: 95621414 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718560|ref|YP_003874092.1| arogenate dehydrogenase 2 [Spirochaeta thermophila DSM 6192] (273 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431108|ref|NP_147329.2| prephenate dehydrogenase [Aeropyru... 60 6e-11 >gi|118431108|ref|NP_147329.2| prephenate dehydrogenase [Aeropyrum pernix K1] Length = 268 Score = 60.1 bits (144), Expect = 6e-11 Identities = 69/247 (27%), Positives = 107/247 (43%), Gaps = 20/247 (8%) Query: 24 RVGVYGLGRFGRFWAETLGTR---FEVYGYSRTPKTIAPRHF---TLTTYEGLLS-CDVI 76 RVG G G R A R Y R A + + ++ +GL + + I Sbjct: 4 RVGFVGAGSVARALARAASARGWPVCFYDIDRERAGEAASQYGGLSFSSLQGLAAESEAI 63 Query: 77 VLCVSISAVEEVARSLARDLPPSTLVMDTCSVKTYPLEVLSRTLPDGIDILGTHPMFGPD 136 V+ V A V AR TLV+DT + K + +R +P + THP+FG Sbjct: 64 VVAVPGPAAGGVMVEAARSSRSGTLVVDTATFKR-GVVAAARGMPPRVLAALTHPLFGGR 122 Query: 137 SARDGIAGLPIVLTPCRVTEEQSSFWEETFREMGLSVHRMTA-EEHDREAAYTQGITHFV 195 ++R + ++ P R ++ E +REMG + R+ + EEHDR A Y+ G+ + + Sbjct: 123 ASRPEKHYVAVMPFPGREGVVEA---ERLYREMGFNTIRLRSWEEHDRLAGYSIGLVYAL 179 Query: 196 GRVL------GELHLEDSPIATVGYRKLLEIREQTCNDPWQLFLDLQHYNPYTRRMREDL 249 L G L L DSP+ + YR L + + +D L ++ NP TR L Sbjct: 180 AEALYAALESGGLDL-DSPLPSTTYRVLGMLAQSVLSDSPDLRGEILS-NPSTREAAASL 237 Query: 250 ARAFTRI 256 A A + Sbjct: 238 ASALMEV 244 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 292,163 Number of Sequences: 1700 Number of extensions: 13104 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 1 length of query: 273 length of database: 492,079 effective HSP length: 75 effective length of query: 198 effective length of database: 364,579 effective search space: 72186642 effective search space used: 72186642 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718561|ref|YP_003874093.1| hypothetical protein STHERM_c08710 [Spirochaeta thermophila DSM 6192] (117 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 131,744 Number of Sequences: 1700 Number of extensions: 5965 Number of successful extensions: 27 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 0 length of query: 117 length of database: 492,079 effective HSP length: 66 effective length of query: 51 effective length of database: 379,879 effective search space: 19373829 effective search space used: 19373829 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718562|ref|YP_003874094.1| hypothetical protein STHERM_c08720 [Spirochaeta thermophila DSM 6192] (210 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.136 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 221,308 Number of Sequences: 1700 Number of extensions: 9899 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 210 length of database: 492,079 effective HSP length: 73 effective length of query: 137 effective length of database: 367,979 effective search space: 50413123 effective search space used: 50413123 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718563|ref|YP_003874095.1| hypothetical protein STHERM_c08730 [Spirochaeta thermophila DSM 6192] (449 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431496|ref|NP_148004.2| MiaB-like protein [Aeropyrum perni... 155 2e-39 >gi|118431496|ref|NP_148004.2| MiaB-like protein [Aeropyrum pernix K1] Length = 450 Score = 155 bits (391), Expect = 2e-39 Identities = 130/430 (30%), Positives = 183/430 (42%), Gaps = 41/430 (9%) Query: 2 KPVVVFY--TLGCKLNQYETEGIAAAFREAGYRIGEFPQSGDLYIVNTCTVTSKSEQXXX 59 KP +Y GC L++++ +A+ EAGYR P+ D+ +VNTC V +EQ Sbjct: 15 KPSRTYYLEVYGCSLSEFDALIMASRLEEAGYRRVARPEDADVILVNTCAVRLDTEQRIA 74 Query: 60 XXXXXXXXEHPEALVVVTGCYPQLERDEVQALSDRVIAXXXXXXXXXXXXXSRLQDEDLD 119 + P+ VV GC + V L L Sbjct: 75 ERLEKLRLQLPDRKYVVAGCLVKARPGLVARLVPEASL--------------------LA 114 Query: 120 PSRVERLLQEI------RTQAPLDGTAG-RFLYRVDRPAFHARSFLKIQDGCDRRCAYCR 172 P VER+L + R LDG R + ++ P A + IQ+GC C++C Sbjct: 115 PQAVERVLDAVDALESGRRLVVLDGRRDTRSMPQL--PITDAVVTVMIQEGCLGDCSFCI 172 Query: 173 VPLARGRAVSDDPARILERVQELEGRGVREIVLTGVNLAQYRWE----SXXXXXXXXXXX 228 +AR + S P I+ERV+E +G REI LTG ++A Y + Sbjct: 173 TKVARRQVRSYSPRVIVERVREAVEKGAREIRLTGTDVAVYGVDLPGKPNLADLVAAILE 232 Query: 229 XXXXXXXFRISSLEP---EGFSEALWEALSSPRICPHFHLPVQSGSNRVLKRMGRWYTAE 285 R+ + P E + ++L + R+ +FHLPVQSG + VLK M R YT Sbjct: 233 KVEGDYRIRVGMMTPDQVEPYLDSLLDVYRDERVYKYFHLPVQSGDDEVLKIMKRNYTVS 292 Query: 286 EISALIARLREVSPDPFISGDFIVGFPGETREDFEATCAFLDENAFSGAHLFRYSPRPGT 345 E A+ R++ PD I+ D IVG PGET E F T ++E F HL +YS RP T Sbjct: 293 EYKAIHRRIKSRFPDAMIATDIIVGHPGETWEAFWNTVRLVEELRFEKVHLAQYSLRPHT 352 Query: 346 AAYASKAHVPERVAKEREEALHACVEVYASAYLARQRGRVVEVIPEQEREKAGQRYAVGT 405 A AS VP+ V KER L V GR V + + + G G Sbjct: 353 EA-ASMEQVPDSVKKERSRILGKIVAEIGLEINGSYVGRRVRALVTERSWREGS--MTGR 409 Query: 406 SENYLLVWAP 415 +NY + P Sbjct: 410 LDNYTPIILP 419 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 409,967 Number of Sequences: 1700 Number of extensions: 16385 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 1 length of query: 449 length of database: 492,079 effective HSP length: 80 effective length of query: 369 effective length of database: 356,079 effective search space: 131393151 effective search space used: 131393151 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718564|ref|YP_003874096.1| hypothetical protein STHERM_c08740 [Spirochaeta thermophila DSM 6192] (388 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 371,957 Number of Sequences: 1700 Number of extensions: 16449 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 388 length of database: 492,079 effective HSP length: 79 effective length of query: 309 effective length of database: 357,779 effective search space: 110553711 effective search space used: 110553711 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718565|ref|YP_003874097.1| hypothetical protein STHERM_c08770 [Spirochaeta thermophila DSM 6192] (162 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.145 0.469 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 135,138 Number of Sequences: 1700 Number of extensions: 4698 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 162 length of database: 492,079 effective HSP length: 70 effective length of query: 92 effective length of database: 373,079 effective search space: 34323268 effective search space used: 34323268 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718566|ref|YP_003874098.1| hypothetical protein STHERM_c08780 [Spirochaeta thermophila DSM 6192] (305 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 291,310 Number of Sequences: 1700 Number of extensions: 12119 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 0 length of query: 305 length of database: 492,079 effective HSP length: 76 effective length of query: 229 effective length of database: 362,879 effective search space: 83099291 effective search space used: 83099291 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718567|ref|YP_003874099.1| adenylate kinase [Spirochaeta thermophila DSM 6192] (212 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431576|ref|NP_148145.2| hypothetical protein APE_1753.1 [A... 42 9e-06 >gi|118431576|ref|NP_148145.2| hypothetical protein APE_1753.1 [Aeropyrum pernix K1] Length = 187 Score = 42.4 bits (98), Expect = 9e-06 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 9 GPPGAGKGTVAAVLKDRLGIPHISTGDLFRDAVSRKTDLGREVEGILARGELVPDELTVA 68 G PG+GK VA ++ + LG+ GD+ R+ R+ L E + ++ +EL A Sbjct: 13 GLPGSGKSVVARIVAEELGLEVKVMGDVVREETVRR-GLEPTPENVERVARMLREELGRA 71 Query: 69 LVRERL-KAPDAGNGYILDGFPRTIAQAEALEAFSPPEKVVNFVIDDEEVVKRLSGRR 125 V + L + + G Y+LDG R++ +AE L ++ ++ ++RL RR Sbjct: 72 AVAKLLAERLEPGRSYVLDGL-RSVEEAEVLARAGWRVFIIGVYAPRKQRLERLMRRR 128 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.141 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 251,835 Number of Sequences: 1700 Number of extensions: 12443 Number of successful extensions: 78 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 78 Number of HSP's gapped (non-prelim): 1 length of query: 212 length of database: 492,079 effective HSP length: 73 effective length of query: 139 effective length of database: 367,979 effective search space: 51149081 effective search space used: 51149081 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718568|ref|YP_003874100.1| hypothetical protein STHERM_c08800 [Spirochaeta thermophila DSM 6192] (112 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.130 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,151 Number of Sequences: 1700 Number of extensions: 1541 Number of successful extensions: 1 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 112 length of database: 492,079 effective HSP length: 65 effective length of query: 47 effective length of database: 381,579 effective search space: 17934213 effective search space used: 17934213 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718569|ref|YP_003874101.1| purine-binding chemotaxis protein [Spirochaeta thermophila DSM 6192] (159 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.146 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 168,265 Number of Sequences: 1700 Number of extensions: 7725 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 159 length of database: 492,079 effective HSP length: 70 effective length of query: 89 effective length of database: 373,079 effective search space: 33204031 effective search space used: 33204031 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718570|ref|YP_003874102.1| DegT/DnrJ/EryC1/StrS family aminotransferase [Spirochaeta thermophila DSM 6192] (338 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 347,901 Number of Sequences: 1700 Number of extensions: 16820 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 338 length of database: 492,079 effective HSP length: 77 effective length of query: 261 effective length of database: 361,179 effective search space: 94267719 effective search space used: 94267719 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718571|ref|YP_003874103.1| inorganic polyphosphate/ATP-NAD kinase [Spirochaeta thermophila DSM 6192] (281 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431329|ref|NP_147717.2| inorganic polyphosphate/ATP-NAD ki... 71 3e-14 >gi|118431329|ref|NP_147717.2| inorganic polyphosphate/ATP-NAD kinase [Aeropyrum pernix K1] Length = 280 Score = 71.2 bits (173), Expect = 3e-14 Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 8/229 (3%) Query: 46 SLDGARLAISIGGDGTVLYSARLVASHGVPL-LPINAGRLGFLAELGEGEWSEVFSSWKE 104 S D + +GGDGT+L + + PL + I AG+ GFL ++ E E + E Sbjct: 54 SRDPPGRVVVVGGDGTLLRTFLRLGERESPLFMTIKAGKKGFLLDVERYEAVERLRDFLE 113 Query: 105 GEALVSERLMLKATVSRGGEVVASCIGLNDAVISSSGISKIVRLSVVMHSCTMGEYHADG 164 G E + + V GE A C+ ND ++++ +K+ R+ V + DG Sbjct: 114 GR--FREVVYPRYRVYLEGEARA-CM-FNDTAVTANN-AKMARVHVFVDGDLAMNIDGDG 168 Query: 165 VIIXXXXXXXXXXXXXXXXILHPEVPAFIVTPICALSLASRPVVTPSSEPVIARVHHHLR 224 V++ I+ P + ++TP+ + L R +V PS V + Sbjct: 169 VVVSTTAGSTAYSLSGGGPIIDPRLDVIVLTPLNPVQLFLRSIVVPSGSRVTVEASVY-S 227 Query: 225 TGVLLTIDGQEVVELAPGDEVRVEDAGIRARLLLSPRW-TFYDVLRTKL 272 +++ IDGQ V EL PG V +E G R+ W +Y+ L T+L Sbjct: 228 NPLVVNIDGQYVYELEPGGIVDIERCGSGVRIARFRWWEDYYERLYTRL 276 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 309,924 Number of Sequences: 1700 Number of extensions: 14809 Number of successful extensions: 63 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 1 length of query: 281 length of database: 492,079 effective HSP length: 76 effective length of query: 205 effective length of database: 362,879 effective search space: 74390195 effective search space used: 74390195 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718572|ref|YP_003874104.1| DNA repair protein RecN [Spirochaeta thermophila DSM 6192] (565 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 482,025 Number of Sequences: 1700 Number of extensions: 19349 Number of successful extensions: 92 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92 Number of HSP's gapped (non-prelim): 0 length of query: 565 length of database: 492,079 effective HSP length: 82 effective length of query: 483 effective length of database: 352,679 effective search space: 170343957 effective search space used: 170343957 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718573|ref|YP_003874105.1| hypothetical protein STHERM_c08850 [Spirochaeta thermophila DSM 6192] (277 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.134 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 239,046 Number of Sequences: 1700 Number of extensions: 10122 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 0 length of query: 277 length of database: 492,079 effective HSP length: 76 effective length of query: 201 effective length of database: 362,879 effective search space: 72938679 effective search space used: 72938679 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718574|ref|YP_003874106.1| hypothetical protein STHERM_c08860 [Spirochaeta thermophila DSM 6192] (330 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.143 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 260,107 Number of Sequences: 1700 Number of extensions: 10412 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 330 length of database: 492,079 effective HSP length: 77 effective length of query: 253 effective length of database: 361,179 effective search space: 91378287 effective search space used: 91378287 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718575|ref|YP_003874107.1| hypothetical protein STHERM_c08870 [Spirochaeta thermophila DSM 6192] (279 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 294,696 Number of Sequences: 1700 Number of extensions: 13177 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 279 length of database: 492,079 effective HSP length: 76 effective length of query: 203 effective length of database: 362,879 effective search space: 73664437 effective search space used: 73664437 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718576|ref|YP_003874108.1| methyltransferase [Spirochaeta thermophila DSM 6192] (284 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601233|ref|NP_147766.1| hypothetical protein APE_1183 [Aero... 40 5e-05 >gi|14601233|ref|NP_147766.1| hypothetical protein APE_1183 [Aeropyrum pernix K1] Length = 309 Score = 40.4 bits (93), Expect = 5e-05 Identities = 30/113 (26%), Positives = 47/113 (41%) Query: 116 SSRGWETKGVEICHHSVCHAREHHGVDVFEGTLEEAPFEPESFSVIHSSHVIEHVPDPVS 175 S R W T + ++ E G +E+ PF ESF ++ S+ V+EHV + S Sbjct: 39 SVRDWVTYNIANVNYIGLDLHEQKGYVDLISNVEKLPFRSESFDIVISTEVLEHVHNWRS 98 Query: 176 FLERIHSLLVPGGWCILVTPNREGLQARLLKERWRSAIPDHVFLFTKRHLSRL 228 + I +L GG +L T + WR I D +F+ + L Sbjct: 99 AICEIKRVLKVGGILVLTTRGPGFPLHAYPHDYWRFDIEDFKKIFSDMRVIEL 151 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.143 0.475 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 317,460 Number of Sequences: 1700 Number of extensions: 14952 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 1 length of query: 284 length of database: 492,079 effective HSP length: 76 effective length of query: 208 effective length of database: 362,879 effective search space: 75478832 effective search space used: 75478832 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718577|ref|YP_003874109.1| hypothetical protein STHERM_c08890 [Spirochaeta thermophila DSM 6192] (237 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 215,446 Number of Sequences: 1700 Number of extensions: 8313 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 237 length of database: 492,079 effective HSP length: 74 effective length of query: 163 effective length of database: 366,279 effective search space: 59703477 effective search space used: 59703477 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718578|ref|YP_003874110.1| hypothetical protein STHERM_c08900 [Spirochaeta thermophila DSM 6192] (538 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 596,547 Number of Sequences: 1700 Number of extensions: 28441 Number of successful extensions: 77 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77 Number of HSP's gapped (non-prelim): 0 length of query: 538 length of database: 492,079 effective HSP length: 81 effective length of query: 457 effective length of database: 354,379 effective search space: 161951203 effective search space used: 161951203 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718579|ref|YP_003874111.1| protein MraZ [Spirochaeta thermophila DSM 6192] (146 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 130,561 Number of Sequences: 1700 Number of extensions: 4947 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 146 length of database: 492,079 effective HSP length: 69 effective length of query: 77 effective length of database: 374,779 effective search space: 28857983 effective search space used: 28857983 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718580|ref|YP_003874112.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM 6192] (324 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 338,222 Number of Sequences: 1700 Number of extensions: 15791 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 0 length of query: 324 length of database: 492,079 effective HSP length: 77 effective length of query: 247 effective length of database: 361,179 effective search space: 89211213 effective search space used: 89211213 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718581|ref|YP_003874113.1| hypothetical protein STHERM_c08930 [Spirochaeta thermophila DSM 6192] (89 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.141 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,018 Number of Sequences: 1700 Number of extensions: 2623 Number of successful extensions: 7 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 89 length of database: 492,079 effective HSP length: 58 effective length of query: 31 effective length of database: 393,479 effective search space: 12197849 effective search space used: 12197849 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718582|ref|YP_003874114.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM 6192] (470 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 531,942 Number of Sequences: 1700 Number of extensions: 27008 Number of successful extensions: 93 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93 Number of HSP's gapped (non-prelim): 0 length of query: 470 length of database: 492,079 effective HSP length: 80 effective length of query: 390 effective length of database: 356,079 effective search space: 138870810 effective search space used: 138870810 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718583|ref|YP_003874115.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Spirochaeta thermophila DSM 6192] (360 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.143 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 297,648 Number of Sequences: 1700 Number of extensions: 10445 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 360 length of database: 492,079 effective HSP length: 78 effective length of query: 282 effective length of database: 359,479 effective search space: 101373078 effective search space used: 101373078 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718584|ref|YP_003874116.1| hypothetical protein STHERM_c08960 [Spirochaeta thermophila DSM 6192] (376 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.146 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 324,479 Number of Sequences: 1700 Number of extensions: 12057 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 376 length of database: 492,079 effective HSP length: 78 effective length of query: 298 effective length of database: 359,479 effective search space: 107124742 effective search space used: 107124742 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718585|ref|YP_003874117.1| cell division protein FtsQ [Spirochaeta thermophila DSM 6192] (271 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 278,142 Number of Sequences: 1700 Number of extensions: 12344 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 271 length of database: 492,079 effective HSP length: 75 effective length of query: 196 effective length of database: 364,579 effective search space: 71457484 effective search space used: 71457484 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718586|ref|YP_003874118.1| cell division protein FtsA [Spirochaeta thermophila DSM 6192] (409 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.139 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 426,842 Number of Sequences: 1700 Number of extensions: 19843 Number of successful extensions: 90 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90 Number of HSP's gapped (non-prelim): 0 length of query: 409 length of database: 492,079 effective HSP length: 79 effective length of query: 330 effective length of database: 357,779 effective search space: 118067070 effective search space used: 118067070 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718587|ref|YP_003874119.1| cell division protein FtsZ [Spirochaeta thermophila DSM 6192] (386 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.137 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 371,287 Number of Sequences: 1700 Number of extensions: 16151 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 386 length of database: 492,079 effective HSP length: 79 effective length of query: 307 effective length of database: 357,779 effective search space: 109838153 effective search space used: 109838153 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718588|ref|YP_003874120.1| DNA integration/recombination/invertion protein [Spirochaeta thermophila DSM 6192] (299 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600982|ref|NP_147508.1| tyrosine recombinase XerC [Aeropyru... 78 3e-16 >gi|14600982|ref|NP_147508.1| tyrosine recombinase XerC [Aeropyrum pernix K1] Length = 362 Score = 77.8 bits (190), Expect = 3e-16 Identities = 53/151 (35%), Positives = 73/151 (48%), Gaps = 17/151 (11%) Query: 136 DRCLLEVLYSCGLRVSEACGLDLQDIFLSEGFVKVRGKGEKERLVPFGKEAGHWMRRYLS 195 D ++ +L GLRVSE L L D+ L G V+V GK KER+V G + + YL Sbjct: 142 DALIVSMLAETGLRVSELLSLRLSDVDLGRGVVRVVGKYGKERIVFLGPLSRMLLEEYL- 200 Query: 196 EARPVLAARRPGSREQAVFLNRWGRRLSRKGAWIRLKRLVAASGVDAKL---HTFRHTCA 252 A P + + LS + + RLK L +G+D + H RHT A Sbjct: 201 -------ASNPLPPDSRII------ELSYQAVYKRLKSLAKRAGLDPRKVRPHILRHTFA 247 Query: 253 THLLHGGANLREVQEFLGHADISTTQIYTHV 283 T L G +L +Q LGH+DI TQ+Y H+ Sbjct: 248 TEALRRGMSLAALQRLLGHSDIKVTQLYLHM 278 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.139 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 293,024 Number of Sequences: 1700 Number of extensions: 12290 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 1 length of query: 299 length of database: 492,079 effective HSP length: 76 effective length of query: 223 effective length of database: 362,879 effective search space: 80922017 effective search space used: 80922017 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718589|ref|YP_003874121.1| hypothetical protein STHERM_c09010 [Spirochaeta thermophila DSM 6192] (237 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 247,478 Number of Sequences: 1700 Number of extensions: 11093 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 0 length of query: 237 length of database: 492,079 effective HSP length: 74 effective length of query: 163 effective length of database: 366,279 effective search space: 59703477 effective search space used: 59703477 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718590|ref|YP_003874122.1| DNA processing protein DprA [Spirochaeta thermophila DSM 6192] (340 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 391,375 Number of Sequences: 1700 Number of extensions: 20819 Number of successful extensions: 74 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74 Number of HSP's gapped (non-prelim): 0 length of query: 340 length of database: 492,079 effective HSP length: 77 effective length of query: 263 effective length of database: 361,179 effective search space: 94990077 effective search space used: 94990077 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718591|ref|YP_003874123.1| hypothetical protein STHERM_c09030 [Spirochaeta thermophila DSM 6192] (723 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431431|ref|NP_147906.2| reverse gyrase [Aeropyrum pernix K1] 215 3e-57 gi|118431415|ref|NP_147880.2| reverse gyrase [Aeropyrum pernix K1] 175 4e-45 gi|14601630|ref|NP_148170.1| DNA topoisomerase I [Aeropyrum pern... 140 1e-34 >gi|118431431|ref|NP_147906.2| reverse gyrase [Aeropyrum pernix K1] Length = 1215 Score = 215 bits (547), Expect = 3e-57 Identities = 183/603 (30%), Positives = 281/603 (46%), Gaps = 110/603 (18%) Query: 13 TLLVVESPAKAKTIEKYLGKGYK-------------------------VEASKGHLIDLP 47 TLLVVESP KA+TI + G+ K + +++GHL DL Sbjct: 619 TLLVVESPTKARTIAWFWGRPGKRRIGRSVIYEASVSDPETGDVHILQITSTRGHLTDLT 678 Query: 48 K----SRLAVDIEGS-FEPDYIVVR-------------------------GKAPILKALQ 77 S+ VD +G + Y ++ +++ L+ Sbjct: 679 TDSVGSKYGVDEDGGGYRAYYSTIKRCLDCGAQHTSSSPFCPRCGSPRQVDSKSVVEILR 738 Query: 78 EKANASSKVLLASDNDREGEAIAYHIRDALLKKNPDLEIGRIVFNEITPQAIREAVEHPR 137 + A+ ++++A+D DREGE IA+ + A+ NP++ GR F+E+TP+A+ EA+ Sbjct: 739 KLASEVDEIVIATDPDREGEKIAWDVFLAVRPYNPNVRRGR--FHEVTPRAVIEALRSGE 796 Query: 138 SIDIHKVEAQKARRVLDRLVGYHLSP-LLWKKVKNGLSAGRVQSVALRLICEREREVESF 196 S++ +EAQK RR++DR +G+HLS L K K L AGRVQ+ L I +R RE + Sbjct: 797 SVEKSLIEAQKVRRIVDRWIGFHLSTHLKLKFSKPWLGAGRVQTPVLGWIVDRYREWQD- 855 Query: 197 VPEEYWTIAARAVVGRSSLDLELVSYKGEKPQIKTEEEAGKIIALLREHPCRVKSLKETS 256 Y I + GR+S Q + E E K + L V + + Sbjct: 856 -TRGYLVIFKLSSGGRTSY----------FTQNRLEVENLKRVEWL-----EVVDIAGKT 899 Query: 257 RQVRPKPPFTTSQLQQVAANRLGFSSQKTMQIAQRLYEGVDLGGTRIGLITYMRTDSTRV 316 + P PP+TT + A+ +LG S+ M+IAQ L+E GLITY RTDSTRV Sbjct: 900 EERNPPPPYTTDEYLYDASRKLGLSAGLAMKIAQDLFES--------GLITYHRTDSTRV 951 Query: 317 AESALSMVRNYIQTH--HPEALPDAPVRYARGKGAQDAHEAIRPTVVDYTPD-------- 366 + + + + Y+ + EA P RG G AHEAIRP D Sbjct: 952 SPTGVKLALEYLASRGLEGEAQP-------RGWGEGGAHEAIRPVRPIDAQDLERAVLSG 1004 Query: 367 --HVKQHLSRDEWRLYSIIWERFVASQMKPMVTKTVTVECEVGEGILRASATQVVEPGFL 424 + L+R R+Y +I+ RF+ASQMKP V + GE + + V G+ Sbjct: 1005 SIRIPIRLTRLHIRVYDMIFRRFIASQMKPATLDIVEATLQAGETVFNHAGVARVRGGY- 1063 Query: 425 SVLSVLKPKDTSKKLPPLEEGQELTIEEWIPSQHFTTGPSRYTDATIVKALEELGIGRPS 484 +++ P + L L G + +E+ + + ++ Y IVK + E GIGRPS Sbjct: 1064 ---ALVNPPRVEEWLARLSPGDRIDVEDVLVVK--SSLKRLYRAGDIVKMMREHGIGRPS 1118 Query: 485 TYAPTIQVLFNRYYVV--RKERQIVPTELGKVVNDILVQSFPDILDVDFTARMEAQLDEI 542 TYA I+ YV+ +K R ++PT+ G + D L F ++ VD T R+E L+ + Sbjct: 1119 TYAKAIEQNRRHGYVIESKKMRYLIPTKTGVSIYDYLSNGFKKLVSVDTTRRLEEALERV 1178 Query: 543 EEG 545 E+G Sbjct: 1179 EKG 1181 >gi|118431415|ref|NP_147880.2| reverse gyrase [Aeropyrum pernix K1] Length = 1370 Score = 175 bits (443), Expect = 4e-45 Identities = 191/719 (26%), Positives = 292/719 (40%), Gaps = 195/719 (27%) Query: 14 LLVVESPAKAKTIEKYLG--------------------KGYKVEASKGHLIDLPKSRLAV 53 LLVVESP KA+TI ++ G K + AS GH+ DL Sbjct: 649 LLVVESPNKARTIARFFGQPSVRLLPGGGRVYEVATGDKILMIMASGGHVFDLVVRVDGR 708 Query: 54 DIEGSF-EPDYIV----------------------------------------------- 65 D+E + EP++ + Sbjct: 709 DLEAAGGEPEHAIFGVLRYRLGGNGAAAYTPVYTSIKRCLDCGYQFVDEASRCPRCGSEL 768 Query: 66 VRGKAPILKALQEKANASSKVLLASDNDREGEAIAYHIRDALLKKNPDLEIGRIVFNEIT 125 +R ++ L+ A + +V + +D D EGE I + + AL PD++ R+ F+E+T Sbjct: 769 IRNSLSTVEDLRRVAWEADEVYVGTDPDTEGEKIGWDVALALRPYAPDIK--RLEFHEVT 826 Query: 126 PQAIREAVEHPRSIDIHKVEAQKARRVLDRLVGYHLSPLLW------------------- 166 +AI EA+ +PRS D + V+AQ RRV DR +G+ LSPLLW Sbjct: 827 KKAILEALSNPRSFDDNLVDAQVVRRVEDRWIGFTLSPLLWCDFWPRYCKRVLEEYGEKR 886 Query: 167 ----------KKVKNGLSAGRVQSVALRLICEREREVESFVPEEYWTIAARAVVGRSSLD 216 K LSAGRVQ+ L + +R V W VV S L Sbjct: 887 PHMDRERCAKYKAYYNLSAGRVQTPTLGWVVDRTLAYRKKV----WLYR---VVHDSQL- 938 Query: 217 LELVSYKGEKPQIKTEEEAGKIIALLREHPCR--------VKSL--KETSRQVRPKPPFT 266 L + + + P++ E +++ +H + VK++ KE + P PP+T Sbjct: 939 --LFAVRSDDPEVP--ESVKRVLDNWVKHHKKTGIEPWLDVKAVVEKEEWTALPPPPPYT 994 Query: 267 TSQLQQVAANRLGFSSQKTMQIAQRLYEGVDLGGTRIGLITYMRTDSTRVAESALSMVRN 326 T + + A LG S + M+IAQ L+E GLITY RTDSTRV++ + + R Sbjct: 995 TDTMLRDANRLLGLGSAEAMRIAQDLFEW--------GLITYHRTDSTRVSDRGMQVARE 1046 Query: 327 YIQTHHPEALPDA--PVRYARGKGAQDAHEAIRPT----------VVDYTPDHVKQHLSR 374 +++T P R+ G AHEAIRP +V+ + L+R Sbjct: 1047 WLETRFGGLAGQLYRPRRWGEG----GAHEAIRPVRPIDVERLQLLVEEGVIELPGTLTR 1102 Query: 375 DEWRLYSIIWERFVASQMKPMVTKTVTVECEVGE------------GILRASATQVVEPG 422 RLY +I+ RF+ASQM+ V V E I R + V G Sbjct: 1103 RHLRLYDLIFRRFMASQMREADALRVVYRLRVPELDGYTLTLERVVEIGRPGDAEGVTRG 1162 Query: 423 FLSVLSVLKPKDTSKKLPPLEEGQELTIEEWIPSQHFTTGPSRYTDATIVKALEELGIGR 482 F V ++P+ P L EG+E I + + YT+ IV+ ++ GIGR Sbjct: 1163 FTLVWPYVRPQ------PRLVEGREAWIRARVEGRQVPKAYP-YTEGEIVEEMKTRGIGR 1215 Query: 483 PSTYAPTIQVLFNRYYVVRKERQ-------IVPTELGKVVNDILVQSF------------ 523 PSTYA ++ LF R YV+ R+ +V T G V + L + Sbjct: 1216 PSTYAKIVETLFRRRYVIEVSREEGRGAGFVVATSRGINVYNYLTEELRSADEEEYGGRI 1275 Query: 524 -------PDILDVDFTARMEAQLDEIEEGKVEWVSMIREFFGPFKE-----KVDHVMEH 570 P ++ D T +E Q+D +E+G ++ F + ++H ++H Sbjct: 1276 AGILRRVPSLVSEDRTRELERQMDMVEKGDASRDDVLESVFNEISDLALLLNIEHPIKH 1334 >gi|14601630|ref|NP_148170.1| DNA topoisomerase I [Aeropyrum pernix K1] Length = 673 Score = 140 bits (353), Expect = 1e-34 Identities = 134/474 (28%), Positives = 211/474 (44%), Gaps = 40/474 (8%) Query: 89 ASDNDREGEAIAYHIRDALLKKNPDLEIGRIVFNEITPQAIREAVEHPRSIDIHKVEAQK 148 A D D EG I + I +A N R+ F+ + PQ IR A +D+ +EA Sbjct: 101 ACDYDIEGSVIGFKIIEAFGDVN---RARRMKFSTLAPQDIRRAYARMERLDVEMIEAGM 157 Query: 149 ARRVLDRLVGYHLSPLLWKKVKNG------LSAGRVQSVALRLICEREREVESFVPEEYW 202 AR +D L G ++S L + + LSAGRVQS L R RE+ VP+ Sbjct: 158 ARSEMDWLWGINVSRALMEAARRAAGRRVILSAGRVQSPTLVEAYRRWREINLHVPKASV 217 Query: 203 TIAARAVVGRSSLDLELVSYKGEKPQIKTEEEAGKIIALLREHP-CRVKSLKETSRQVRP 261 + A G D G KPQ + E A I + LR++P V+ ++ +RP Sbjct: 218 AVKITAEKGGGVFD---ARPHGWKPQ--SLETARSIKSELRKNPWLAVEEVRSERSILRP 272 Query: 262 KPPFTTSQLQQVAANRLGFSSQKTMQIAQRLYEGVDLGGTRIGLITYMRTDSTRVAESAL 321 P F LQ+ A LG +T IA+ LY LI+Y RT+S ++ S Sbjct: 273 PPAFNLGDLQKEANRILGLPPLRTQSIAEELY--------LEALISYPRTNSQKLPPSIN 324 Query: 322 SMVRNYIQTHHP------EALPD--APVRYARGKGAQDAHEAIRPTVVDYTPDHVKQHLS 373 H P E L + +R +G AH AI P T + Q LS Sbjct: 325 YRAILDKLAHGPLGREARELLKETGGVLRPVQGSKDDPAHPAIHP-----TGEKPSQRLS 379 Query: 374 RDEWRLYSIIWERFVAS-QMKPMVTKTVTVECEVGEGILRASATQVVEPGFLSVLSVLKP 432 ++ +Y +I RF+A+ + +V+K+ + + + RA +V + G+L P Sbjct: 380 KEHMAVYELIVRRFLAAFSREAIVSKSSVLLRDFQGRVWRAEGLRVEDLGWLKYYHYSTP 439 Query: 433 KDTSKKLPPLEEGQELTIEEWIPSQHFTTGPSRYTDATIVKALEELGIGRPSTYAPTIQV 492 + K +PPL+ G + + ++ P R A++++ +E + IG T A I+ Sbjct: 440 GE--KPMPPLDRGDKARVVRVDVRVEWSQTPVRLDKASLLRWMESVNIGTEGTRARIIET 497 Query: 493 LFNRYYVVRKERQIVPTELGKVVNDILVQSFPDILDVDFTARMEAQLDEIEEGK 546 L+ R Y+ + V T LG+ V I+ FP++ D T R E+ +++I G+ Sbjct: 498 LYKRGYLEGSRKSEV-TPLGEAVAVIIQTLFPELSKPDLTRRFESMIEDIRSGR 550 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 703,620 Number of Sequences: 1700 Number of extensions: 30426 Number of successful extensions: 119 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 95 Number of HSP's gapped (non-prelim): 7 length of query: 723 length of database: 492,079 effective HSP length: 84 effective length of query: 639 effective length of database: 349,279 effective search space: 223189281 effective search space used: 223189281 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718592|ref|YP_003874124.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192] (312 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600982|ref|NP_147508.1| tyrosine recombinase XerC [Aeropyru... 95 2e-21 gi|118431212|ref|NP_147516.2| hypothetical protein APE_0818.1 [A... 45 3e-06 >gi|14600982|ref|NP_147508.1| tyrosine recombinase XerC [Aeropyrum pernix K1] Length = 362 Score = 95.1 bits (235), Expect = 2e-21 Identities = 91/314 (28%), Positives = 138/314 (43%), Gaps = 50/314 (15%) Query: 6 GSVSTLP-------QETLID--RFLAHLSHMRGLSEATVRSYRNDL---------VKVGA 47 GS+ +LP + +L D R + G S T++ YR L V+VG Sbjct: 5 GSIESLPPPPRDIREYSLEDAARLFLTILESTGWSSKTIKVYRAALKDFLKSYGRVRVGD 64 Query: 48 FLEKLGTDLVSATREDIRHCVAEYTLARQAPSSINRMLSSLRSWYRFLRKEGVRSDSPME 107 +S+ E +R V T A + R FL+ GV + M Sbjct: 65 ASHMTYVQWMSSVSERVRKGVISRTTAHYYSIMVRR----------FLKWAGV--EGVMR 112 Query: 108 GISSVKAGKRLPSFLFEDEVDRLLDIEGSDFASLRDRALLEVLYSTGCRVQELVSLTTSG 167 S + +R L +V+ LL S + D ++ +L TG RV EL+SL S Sbjct: 113 PFS--RGERRFSGSLSWRDVEALL----SASRDIIDALIVSMLAETGLRVSELLSLRLSD 166 Query: 168 VQVSRGWCVVKGKGGKERLLFLGLGARKALAAYLPLRQALLERMGRREEGALFVNQKGSP 227 V + RG V GK GKER++FLG +R L YL L + + Sbjct: 167 VDLGRGVVRVVGKYGKERIVFLGPLSRMLLEEYLA-------------SNPLPPDSRIIE 213 Query: 228 LTPRGVAYIIERRAREKGLEKR-ISPHVFRHSFATHVLSRGADLRVVQEMLGHASLSTTQ 286 L+ + V ++ A+ GL+ R + PH+ RH+FAT L RG L +Q +LGH+ + TQ Sbjct: 214 LSYQAVYKRLKSLAKRAGLDPRKVRPHILRHTFATEALRRGMSLAALQRLLGHSDIKVTQ 273 Query: 287 VYTHLSLPALKRMY 300 +Y H++ ++R Y Sbjct: 274 LYLHMTYDDVEREY 287 >gi|118431212|ref|NP_147516.2| hypothetical protein APE_0818.1 [Aeropyrum pernix K1] Length = 413 Score = 44.7 bits (104), Expect = 3e-06 Identities = 76/292 (26%), Positives = 118/292 (40%), Gaps = 32/292 (10%) Query: 23 HLSHMRGLSEATVRSYRNDLVKVG-------AFLEKLGTDLVSATREDIRHCVAEYTLAR 75 H+ G EA VRS D G LE+LG L T++ +R + Y ++ Sbjct: 130 HVREFEGYLEARVRSGDMDPGTAGDRLRYLRMALEELGYVL---TKQALRGLIRRYQASQ 186 Query: 76 QAPSSINRMLSSLRSWYRFLRKEGVRSDSPMEGISSVKAGKRLPSFLFEDEVDRLLDIEG 135 P + + SL+ + KE V+ +E I + P ++ R+ +E Sbjct: 187 --PGVADHIYKSLKLFV----KEVVQDRELLEAIPYPRVRWGSPEAPQWSDICRV--VEA 238 Query: 136 SDFASLRDRALLEVLYSTGCRVQELVSLTTSGVQVSRG--WCVVKGKGGKERLLFLGLGA 193 A RALL +L STG RV+ SL +++S W + + F+ Sbjct: 239 LPHAGA-PRALLLLLASTGLRVETAYSLPLDSLKLSERLVWVWSLKRSKRTYFSFITERV 297 Query: 194 RKALAAYLPLRQALLERMGRREEGALFVNQKGSPLTPRGVAYIIERRAREKGLEKRISPH 253 + L YL R+ LE +G R G LF P PR + I A ++ L +R Sbjct: 298 KGELEVYLEARRRHLEILG-RGSGKLF------PYKPRRLREAI-YEAMDRELGRRFQLK 349 Query: 254 VFRHSFATHVLSRGADLRVVQEMLGHASLSTTQVYTHL--SLPALKRMYRKA 303 + R A H LS + ++GHA + + L + L+R Y KA Sbjct: 350 LIRKRVAEH-LSHHLSTLELNVIMGHAPREVVEKHYLLRDQIEDLRRKYDKA 400 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 303,852 Number of Sequences: 1700 Number of extensions: 13803 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 2 length of query: 312 length of database: 492,079 effective HSP length: 77 effective length of query: 235 effective length of database: 361,179 effective search space: 84877065 effective search space used: 84877065 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718593|ref|YP_003874125.1| ATP-dependent protease HslV [Spirochaeta thermophila DSM 6192] (178 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.135 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 167,408 Number of Sequences: 1700 Number of extensions: 7000 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 178 length of database: 492,079 effective HSP length: 71 effective length of query: 107 effective length of database: 371,379 effective search space: 39737553 effective search space used: 39737553 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718594|ref|YP_003874126.1| ATP-dependent hsl protease ATP-binding subunit HslU [Spirochaeta thermophila DSM 6192] (448 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431307|ref|NP_147676.2| hypothetical protein APE_1035.1 [A... 42 4e-05 >gi|118431307|ref|NP_147676.2| hypothetical protein APE_1035.1 [Aeropyrum pernix K1] Length = 379 Score = 41.6 bits (96), Expect = 4e-05 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 16/82 (19%) Query: 15 RQIVEELDKYIVGQGQAKKVVAIALRNRWRRQQLPPELRDEIAPKNIIMIGPTGVGKTEI 74 R+ ++EL+K VG+ + ++ +AL I+ ++++MIG G K+ + Sbjct: 11 RKFLQELEKPFVGRHEQALMLTLAL----------------ISGEHVVMIGEPGTAKSAL 54 Query: 75 ARRISRLTGAPFLKVEATKYTE 96 ARR + L A F K T++TE Sbjct: 55 ARRAAELLNARFFKYLLTRFTE 76 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 424,042 Number of Sequences: 1700 Number of extensions: 18485 Number of successful extensions: 142 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 141 Number of HSP's gapped (non-prelim): 1 length of query: 448 length of database: 492,079 effective HSP length: 80 effective length of query: 368 effective length of database: 356,079 effective search space: 131037072 effective search space used: 131037072 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718595|ref|YP_003874127.1| flagellar basal-body rod protein [Spirochaeta thermophila DSM 6192] (138 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,379 Number of Sequences: 1700 Number of extensions: 3026 Number of successful extensions: 3 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 138 length of database: 492,079 effective HSP length: 68 effective length of query: 70 effective length of database: 376,479 effective search space: 26353530 effective search space used: 26353530 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718596|ref|YP_003874128.1| hypothetical protein STHERM_c09080 [Spirochaeta thermophila DSM 6192] (152 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 133,903 Number of Sequences: 1700 Number of extensions: 4957 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 152 length of database: 492,079 effective HSP length: 69 effective length of query: 83 effective length of database: 374,779 effective search space: 31106657 effective search space used: 31106657 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718597|ref|YP_003874129.1| flagellar hook-basal body complex protein FliE [Spirochaeta thermophila DSM 6192] (108 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,172 Number of Sequences: 1700 Number of extensions: 2369 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 108 length of database: 492,079 effective HSP length: 65 effective length of query: 43 effective length of database: 381,579 effective search space: 16407897 effective search space used: 16407897 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718598|ref|YP_003874130.1| flagellar M-ring protein [Spirochaeta thermophila DSM 6192] (569 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 474,762 Number of Sequences: 1700 Number of extensions: 19050 Number of successful extensions: 71 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71 Number of HSP's gapped (non-prelim): 0 length of query: 569 length of database: 492,079 effective HSP length: 82 effective length of query: 487 effective length of database: 352,679 effective search space: 171754673 effective search space used: 171754673 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718599|ref|YP_003874131.1| hypothetical protein STHERM_c09110 [Spirochaeta thermophila DSM 6192] (353 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.133 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 268,360 Number of Sequences: 1700 Number of extensions: 9114 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 353 length of database: 492,079 effective HSP length: 78 effective length of query: 275 effective length of database: 359,479 effective search space: 98856725 effective search space used: 98856725 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718600|ref|YP_003874132.1| flagellar assembly protein [Spirochaeta thermophila DSM 6192] (326 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad5... 46 1e-06 gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aero... 43 9e-06 gi|14600971|ref|NP_147497.1| hypothetical protein APE_0790 [Aero... 42 3e-05 >gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1] Length = 919 Score = 45.8 bits (107), Expect = 1e-06 Identities = 42/178 (23%), Positives = 85/178 (47%), Gaps = 15/178 (8%) Query: 93 VEADRIIKEAEQVAFEEVKKRNEEAARLKEEASK---EAERIVTEAQKRVEDLVAEARKK 149 +E R E +++R EEA RLKEEA+K EAE+++ KR+E+L AE +K Sbjct: 643 LEKAREALEGVDKELSAIERRLEEARRLKEEAAKLKWEAEQVM----KRLEELEAEEKKL 698 Query: 150 AEEIEQAAYDKGYAEGREEGFRRGKDEVDRLIDRLHLVISKVIEARQRVLAESEAQIVQL 209 +E+ + + + + + D + R+ + + +++ E + R + EA + L Sbjct: 699 RKEVSRKSEIEARLKEVQNTLAELDDRISRIDREMGELQTRIREMKSRKASGEEALKLYL 758 Query: 210 VLLIAQKVVKVLSEHQKNIVINNVVQALRKLKSKTDVVIRVNLE--DLEVTSAHLKEI 265 ++++++ + E I ++ L D++ R NL+ +E+ +EI Sbjct: 759 PAAASRRIMEEIGE----IAYRRLLAVLE--DEMNDILSRFNLDVAGVEIREKAAREI 810 >gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aeropyrum pernix K1] Length = 791 Score = 43.1 bits (100), Expect = 9e-06 Identities = 49/213 (23%), Positives = 95/213 (44%), Gaps = 33/213 (15%) Query: 81 EKEREAIISGAKVEADRIIKEAEQVAFEEVKKRNEEAARLKEEASKEAERIVTEAQKRVE 140 E +EA +G EA + +EA +A EEA L E+A + A+ V+E +VE Sbjct: 548 EAAKEAYSNGRYGEAIVLAEEAASIA--------EEAKELAEKAIEAAQEAVSEVLNQVE 599 Query: 141 DLVAEARKKAEEIEQAAYDKGYAEGREEGFRRGKDEVDRLIDRLHLVISKV--------I 192 +L+ + EEIE A A E + DEV +D+ ++ + I Sbjct: 600 ELLDRVKDLQEEIEDIAEKAREAGVLTEEIQAAIDEVLGKLDQARSLLEEADSLAKEGDI 659 Query: 193 EARQRVLAESEAQIVQLVLLIAQKVVKVLSEHQKNIVINNVVQALRKLKSK-----TDVV 247 + ++ L E+ I + V ++ + ++ + E +I+ + + + +L+ K T+ Sbjct: 660 DGARQKLGEARDVIEEAVSMV--RDIRSMVEQAIGDLIDELRRLIEELREKAAELNTEAA 717 Query: 248 I----------RVNLEDLEVTSAHLKEIIEKIE 270 + R L +E ++++E IEK++ Sbjct: 718 MLEAKARRMGDREALRLIEEARSNIEEAIEKLQ 750 >gi|14600971|ref|NP_147497.1| hypothetical protein APE_0790 [Aeropyrum pernix K1] Length = 297 Score = 41.6 bits (96), Expect = 3e-05 Identities = 56/268 (20%), Positives = 120/268 (44%), Gaps = 23/268 (8%) Query: 79 QWEKEREAIISGAKVEADRII--KEAEQVAFEEVKKRNEEAARLKEEASKEAERI--VTE 134 +++KE E ++ + + I+ KE + EVK EE + E + E++ + E Sbjct: 8 EFKKEEEELLKTIEELKEEIVRLKEERRKLINEVKALREERRKASREKREYVEKLRSLRE 67 Query: 135 AQKRVEDLVA---EARKKAEE-----IEQAAYDKGYAEGREEGFRRGKDEVDRLIDRLH- 185 +K++ D +A E RKK + +Q +G E +EG R K + RL RL Sbjct: 68 ERKKILDELAQLKEERKKTRDELVIKRDQLRVLRGLLE--KEGGRLAKISLKRLQRRLQE 125 Query: 186 ---LVISKVIE-ARQRVLAESEAQIVQLVLLIAQKVVKVLSEHQKNIVINNVVQALRKLK 241 + +++V+ ++ L E +++ +L+ + + + LS + + +V L+ L Sbjct: 126 LEMMQMTRVLRPEEEKRLVEEISRLEELIERVRKAKEQALSTMELQAEVKALVIKLKDLN 185 Query: 242 SKTDVVIRVN---LEDLEVTSAHLKEIIEKIEHVGNVTVMEDHTVDRGGCIVETDFGQID 298 + D + + E+L S+ ++E E+I+ + +D ++ + + Sbjct: 186 QRIDELRQQAGSVKEELATLSSKIEEYNERIKKLSEEIEKRSTRIDELSKEIDNLYAKY- 244 Query: 299 ARISTQLKQIEEKILETVPIVERERIQE 326 + T+LK I + + + E E+ +E Sbjct: 245 REVMTRLKDIRIAMARGMELSEVEKRRE 272 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.131 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 262,751 Number of Sequences: 1700 Number of extensions: 9858 Number of successful extensions: 86 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 11 length of query: 326 length of database: 492,079 effective HSP length: 77 effective length of query: 249 effective length of database: 361,179 effective search space: 89933571 effective search space used: 89933571 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718601|ref|YP_003874133.1| hypothetical protein STHERM_c09130 [Spirochaeta thermophila DSM 6192] (448 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431025|ref|NP_147204.2| V-type ATP synthase subunit B [Aer... 138 2e-34 gi|118431026|ref|NP_147205.2| V-type ATP synthase subunit A [Aer... 121 4e-29 >gi|118431025|ref|NP_147204.2| V-type ATP synthase subunit B [Aeropyrum pernix K1] Length = 463 Score = 138 bits (348), Expect = 2e-34 Identities = 109/361 (30%), Positives = 169/361 (46%), Gaps = 14/361 (3%) Query: 80 GDVIEAMGEPLSIRVSEGLLGRVLDARGMPIDDKGPLPPGIRYPVQGGPPHVLKRRRIEE 139 G V+ MG PL I V+E +LGR+++ G PID + R V G P + +R E+ Sbjct: 70 GTVVRFMGRPLEIPVTEDMLGRIMNGLGEPIDGGPKIDADERRDVNGAPLNPAERAYPED 129 Query: 140 QIATGIRALDGLLPIGKGQRXXXXXXXXXXXXTLLGMVARNTNAD------VNVIALIGE 193 I TG+ A+DG+ + +GQ+ L +AR V + IG Sbjct: 130 FIQTGVSAIDGMNTLVRGQKLPIFSGAGLPHNRLAAQIARQATVRGEEEEFAVVFSAIGI 189 Query: 194 RGREVAEFIEHDLGEEGLKRSVVVVSTSDTPAVARYRGAFVAVAIAEYFR-DQGKDVMLL 252 + + F + L R + V+ +D PA+ R A+ +AEY ++ V+++ Sbjct: 190 KYDDFLFFKKFFEETGALGRVAMFVNLADEPAMIRLITPRAALTLAEYLAYERDMHVLVI 249 Query: 253 FDSITRFARALREMGLALGESPATRGYPPSVFSTLPKLLERCG--TSEKGTITGFFSVLV 310 +T +A ALRE+ A E P +GYP ++S L + ER G +KG+IT + + Sbjct: 250 ITDMTNYAEALREISAAREEVPGRQGYPGYLYSDLASIYERAGRVKGKKGSITQMPILTM 309 Query: 311 EGDDMDEPVSDAVRGILDGHVVLSRRLAQRQHYPAIDVLSSVSRLAPKITTP--PVRDAA 368 DD+ P+ D I +G +VLSR L R YP I+VL S+SRL + P D A Sbjct: 310 PNDDITHPIPDLTGYITEGQIVLSRELHNRGIYPPINVLMSLSRLMKEGIGPGKTREDHA 369 Query: 369 RRVMRWLAAYQETEDLINVGA-YARGSNPEVDKAIEKLPDI--NAFLRQEIEERAPLAET 425 + A+Y +L ++ A S E D+ K D+ FL+Q E + ET Sbjct: 370 EVSNQLYASYSRGVELRSLTAVVGEESLSERDRRYLKFADLFEQRFLKQGERENRSIEET 429 Query: 426 I 426 + Sbjct: 430 L 430 >gi|118431026|ref|NP_147205.2| V-type ATP synthase subunit A [Aeropyrum pernix K1] Length = 597 Score = 121 bits (303), Expect = 4e-29 Identities = 83/256 (32%), Positives = 124/256 (48%), Gaps = 19/256 (7%) Query: 121 RYPVQGGPPHVLKRRRIEEQIA--TGIRALDGLLPIGKGQRXXXXXXXXXXXXTLLGMVA 178 R+PV+ P + ++E Q+ TG+R +D P+ KG L +A Sbjct: 199 RWPVRIPRPF---KEKLEPQLPLITGVRIIDTFFPMAKGGTGAVPGGFGTGKTVTLHSLA 255 Query: 179 RNTNADVNVIALIGERGREVAEFIEHD-------LGEEGLKRSVVVVSTSDTPAVARYRG 231 + + A V + GERG E+ E +E G+ + R+V++ +TS+ P AR Sbjct: 256 QWSEARVVIYIGCGERGNEMTEVLERFPQYKDPWTGKPLMDRTVLIANTSNMPVAAREAS 315 Query: 232 AFVAVAIAEYFRDQGKDVMLLFDSITRFARALREMGLALGESPATRGYPPSVFSTLPKLL 291 +V + IAEY+RD G DV+L+ DS +R+A ALRE+ L E PA GYP + S L + Sbjct: 316 IYVGITIAEYYRDMGYDVLLVADSTSRWAEALREIAGRLEEMPAEEGYPSYLASRLAEFY 375 Query: 292 ERCG-------TSEKGTITGFFSVLVEGDDMDEPVSDAVRGILDGHVVLSRRLAQRQHYP 344 ER G G++T +V G D EPV+ + L +LA +HYP Sbjct: 376 ERAGRVKALGSPERSGSVTVVGAVSPPGGDFSEPVTSHTTRFIRVFWALDTKLAYSRHYP 435 Query: 345 AIDVLSSVSRLAPKIT 360 AI+ L S S +T Sbjct: 436 AINWLMSYSAYVDLVT 451 Score = 40.4 bits (93), Expect = 9e-05 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%) Query: 23 AVQGMRIEGQGPLAVVGELCRIHPPDDPDAG---IWAEVIGLKGSTVYLMGYRDPEGIQV 79 AV+G + GPL V + + G + E+ ++G ++ Y G++ Sbjct: 2 AVKGSIVRISGPLVVAEGMSGAQMYEMVYVGEDRLIGEITRIRGDRAFIQVYESTSGLKP 61 Query: 80 GDVIEAMGEPLSIRVSEGLLGRVLDARGMPI 110 G+ + G PLS+ + GLLG + D P+ Sbjct: 62 GEPVVGTGAPLSVELGPGLLGTIYDGVQRPL 92 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 477,676 Number of Sequences: 1700 Number of extensions: 23919 Number of successful extensions: 88 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80 Number of HSP's gapped (non-prelim): 3 length of query: 448 length of database: 492,079 effective HSP length: 80 effective length of query: 368 effective length of database: 356,079 effective search space: 131037072 effective search space used: 131037072 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718602|ref|YP_003874134.1| hypothetical protein STHERM_c09140 [Spirochaeta thermophila DSM 6192] (152 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 109,450 Number of Sequences: 1700 Number of extensions: 3167 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 152 length of database: 492,079 effective HSP length: 69 effective length of query: 83 effective length of database: 374,779 effective search space: 31106657 effective search space used: 31106657 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718603|ref|YP_003874135.1| hypothetical protein STHERM_c09150 [Spirochaeta thermophila DSM 6192] (207 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 143,409 Number of Sequences: 1700 Number of extensions: 4231 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 207 length of database: 492,079 effective HSP length: 73 effective length of query: 134 effective length of database: 367,979 effective search space: 49309186 effective search space used: 49309186 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718604|ref|YP_003874136.1| hypothetical protein STHERM_c09160 [Spirochaeta thermophila DSM 6192] (443 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.309 0.130 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 494,919 Number of Sequences: 1700 Number of extensions: 24836 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 0 length of query: 443 length of database: 492,079 effective HSP length: 80 effective length of query: 363 effective length of database: 356,079 effective search space: 129256677 effective search space used: 129256677 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718605|ref|YP_003874137.1| flagellar hook assembly protein [Spirochaeta thermophila DSM 6192] (145 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.130 0.338 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 108,129 Number of Sequences: 1700 Number of extensions: 3478 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 145 length of database: 492,079 effective HSP length: 69 effective length of query: 76 effective length of database: 374,779 effective search space: 28483204 effective search space used: 28483204 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718606|ref|YP_003874138.1| flagellar hook protein [Spirochaeta thermophila DSM 6192] (462 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 470,599 Number of Sequences: 1700 Number of extensions: 21469 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 462 length of database: 492,079 effective HSP length: 80 effective length of query: 382 effective length of database: 356,079 effective search space: 136022178 effective search space used: 136022178 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718607|ref|YP_003874139.1| flagellar protein [Spirochaeta thermophila DSM 6192] (65 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.146 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,426 Number of Sequences: 1700 Number of extensions: 2090 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 65 length of database: 492,079 effective HSP length: 37 effective length of query: 28 effective length of database: 429,179 effective search space: 12017012 effective search space used: 12017012 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718608|ref|YP_003874140.1| chemotaxis protein MotA [Spirochaeta thermophila DSM 6192] (262 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 243,794 Number of Sequences: 1700 Number of extensions: 10837 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 262 length of database: 492,079 effective HSP length: 75 effective length of query: 187 effective length of database: 364,579 effective search space: 68176273 effective search space used: 68176273 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718609|ref|YP_003874141.1| hypothetical protein STHERM_c09210 [Spirochaeta thermophila DSM 6192] (243 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 233,920 Number of Sequences: 1700 Number of extensions: 9465 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 0 length of query: 243 length of database: 492,079 effective HSP length: 74 effective length of query: 169 effective length of database: 366,279 effective search space: 61901151 effective search space used: 61901151 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718610|ref|YP_003874142.1| flagellar protein [Spirochaeta thermophila DSM 6192] (180 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 141,476 Number of Sequences: 1700 Number of extensions: 4669 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 180 length of database: 492,079 effective HSP length: 71 effective length of query: 109 effective length of database: 371,379 effective search space: 40480311 effective search space used: 40480311 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718611|ref|YP_003874143.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM 6192] (341 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 297,891 Number of Sequences: 1700 Number of extensions: 12352 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 341 length of database: 492,079 effective HSP length: 77 effective length of query: 264 effective length of database: 361,179 effective search space: 95351256 effective search space used: 95351256 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718612|ref|YP_003874144.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM 6192] (350 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.132 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 333,103 Number of Sequences: 1700 Number of extensions: 14299 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 350 length of database: 492,079 effective HSP length: 78 effective length of query: 272 effective length of database: 359,479 effective search space: 97778288 effective search space used: 97778288 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718613|ref|YP_003874145.1| hypothetical protein STHERM_c09250 [Spirochaeta thermophila DSM 6192] (212 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 204,704 Number of Sequences: 1700 Number of extensions: 8091 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 212 length of database: 492,079 effective HSP length: 73 effective length of query: 139 effective length of database: 367,979 effective search space: 51149081 effective search space used: 51149081 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718614|ref|YP_003874146.1| hypothetical protein STHERM_c09260 [Spirochaeta thermophila DSM 6192] (258 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.146 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 213,370 Number of Sequences: 1700 Number of extensions: 7775 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 258 length of database: 492,079 effective HSP length: 75 effective length of query: 183 effective length of database: 364,579 effective search space: 66717957 effective search space used: 66717957 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718615|ref|YP_003874147.1| flagellar biosynthesis protein [Spirochaeta thermophila DSM 6192] (89 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.143 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,575 Number of Sequences: 1700 Number of extensions: 907 Number of successful extensions: 4 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 89 length of database: 492,079 effective HSP length: 58 effective length of query: 31 effective length of database: 393,479 effective search space: 12197849 effective search space used: 12197849 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718616|ref|YP_003874148.1| hypothetical protein STHERM_c09280 [Spirochaeta thermophila DSM 6192] (260 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.332 0.147 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 226,915 Number of Sequences: 1700 Number of extensions: 9213 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 260 length of database: 492,079 effective HSP length: 75 effective length of query: 185 effective length of database: 364,579 effective search space: 67447115 effective search space used: 67447115 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718617|ref|YP_003874149.1| hypothetical protein STHERM_c09290 [Spirochaeta thermophila DSM 6192] (387 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 327,574 Number of Sequences: 1700 Number of extensions: 13065 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 387 length of database: 492,079 effective HSP length: 79 effective length of query: 308 effective length of database: 357,779 effective search space: 110195932 effective search space used: 110195932 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718618|ref|YP_003874150.1| hypothetical protein STHERM_c09300 [Spirochaeta thermophila DSM 6192] (694 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 554,161 Number of Sequences: 1700 Number of extensions: 22580 Number of successful extensions: 74 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74 Number of HSP's gapped (non-prelim): 0 length of query: 694 length of database: 492,079 effective HSP length: 83 effective length of query: 611 effective length of database: 350,979 effective search space: 214448169 effective search space used: 214448169 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718619|ref|YP_003874151.1| flagellar-associated GTP-binding protein [Spirochaeta thermophila DSM 6192] (385 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431321|ref|NP_147702.2| signal recognition particle protei... 53 1e-08 gi|14601593|ref|NP_148133.1| signal recognition 54 kDa protein [... 52 3e-08 >gi|118431321|ref|NP_147702.2| signal recognition particle protein [Aeropyrum pernix K1] Length = 308 Score = 53.1 bits (126), Expect = 1e-08 Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 16/186 (8%) Query: 181 RPEIFILVGPTGVGKTTTIAKLAAMYGLGLEDNIRYDVRIITIDNYRIAARQQIETYANI 240 RP + + +G G GKTTTIAK+A M + I D +R A++Q+ +A Sbjct: 112 RPLVILFLGVNGTGKTTTIAKVAYMLRKAGVTPV-----IAAADTFRAGAQEQLAVHAEK 166 Query: 241 MGIPVA--------CVESYEELERQVRLFQDVDIIFVDTIGKSPRDYRKLADMKDMLEAC 292 +G+P+ +Y+ ++ + + VDT G+ D + +++ ++ Sbjct: 167 LGVPIVRGRYGGDPASVAYDAVKHAES--RGFCAVLVDTAGRMHVDSNLVEELRKIVRVV 224 Query: 293 GSRAQTHLALSATTKTADIYTVLQQFEPFNYTSVVLTKLDETTTVGNIISVLEEKGKPIS 352 + L + + T + E V++TK+D G ++SV KPI Sbjct: 225 KPDYKI-LVVDSLTGNDAVEQARLFDEAVGVDGVIVTKVDADPKGGTLVSVAHAIRKPIL 283 Query: 353 FITNGQ 358 +I GQ Sbjct: 284 YIGTGQ 289 >gi|14601593|ref|NP_148133.1| signal recognition 54 kDa protein [Aeropyrum pernix K1] Length = 441 Score = 51.6 bits (122), Expect = 3e-08 Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 19/191 (9%) Query: 180 RRPEIFILVGPTGVGKTTTIAKLAAMYGLGLEDNIR--YDVRIITIDNYRIAARQQIETY 237 + P I +LVG G GKTTT KLA Y +R Y V +++ D +R A +Q++ Sbjct: 94 KTPWIVLLVGVQGSGKTTTAGKLAYYY-------VRRGYKVGLVSSDTHRPGAYEQLKRL 146 Query: 238 ANIMGIPVACVESYEELERQVRLFQDV-----DIIFVDTIGKSPRDYRKLADMKDMLEAC 292 A G + E R +D+ +I+ VDT G+ + + A + D ++A Sbjct: 147 AEEAGAMFYGEREGDPAEIARRGLEDLLSRGAEIVIVDTAGR--HGHGEEARLLDEMKAI 204 Query: 293 GSRA---QTHLALSATTKTADIYTVLQQFEPFNYTSVVLTKLDETTTVGNIISVLEEKGK 349 S+ + L + A+ + + + S+++TK+D T G ++ G Sbjct: 205 ASKVRPDEVALVIDASIGQKAMGLAERFHKSTPIGSIIVTKMDGTARGGGALTAAAVTGA 264 Query: 350 PISFITNGQAV 360 I FI G+ + Sbjct: 265 RIKFIGTGETL 275 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 344,636 Number of Sequences: 1700 Number of extensions: 14703 Number of successful extensions: 133 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 132 Number of HSP's gapped (non-prelim): 2 length of query: 385 length of database: 492,079 effective HSP length: 78 effective length of query: 307 effective length of database: 359,479 effective search space: 110360053 effective search space used: 110360053 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718620|ref|YP_003874152.1| flagellar synthesis regulator FleN [Spirochaeta thermophila DSM 6192] (287 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430945|ref|NP_147065.2| MRP/NBP35 family protein [Aeropyru... 43 8e-06 >gi|118430945|ref|NP_147065.2| MRP/NBP35 family protein [Aeropyrum pernix K1] Length = 309 Score = 43.1 bits (100), Expect = 8e-06 Identities = 23/48 (47%), Positives = 33/48 (68%) Query: 27 IAVTSGKGGVGKTNVATNLAIAYAQLGKKVVLMDADLGLANVNVVLGI 74 IAV S KGGVGK+ V +LA A A G++V + DAD+ +V+ +LG+ Sbjct: 48 IAVISTKGGVGKSFVTASLAAALAAEGRRVGVFDADISGPSVHKMLGL 95 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 238,742 Number of Sequences: 1700 Number of extensions: 9540 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 1 length of query: 287 length of database: 492,079 effective HSP length: 76 effective length of query: 211 effective length of database: 362,879 effective search space: 76567469 effective search space used: 76567469 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718621|ref|YP_003874153.1| hypothetical protein STHERM_c09330 [Spirochaeta thermophila DSM 6192] (218 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.312 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 155,035 Number of Sequences: 1700 Number of extensions: 5353 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 218 length of database: 492,079 effective HSP length: 73 effective length of query: 145 effective length of database: 367,979 effective search space: 53356955 effective search space used: 53356955 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718622|ref|YP_003874154.1| hypothetical protein STHERM_c09340 [Spirochaeta thermophila DSM 6192] (262 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 231,610 Number of Sequences: 1700 Number of extensions: 9366 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 262 length of database: 492,079 effective HSP length: 75 effective length of query: 187 effective length of database: 364,579 effective search space: 68176273 effective search space used: 68176273 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718623|ref|YP_003874155.1| polymerase most proteins contain PALM domain HD hydrolase domain and Zn-ribbon domain [Spirochaeta thermophila DSM 6192] (647 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.136 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 544,290 Number of Sequences: 1700 Number of extensions: 22940 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 0 length of query: 647 length of database: 492,079 effective HSP length: 83 effective length of query: 564 effective length of database: 350,979 effective search space: 197952156 effective search space used: 197952156 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718624|ref|YP_003874156.1| hypothetical protein STHERM_c09360 [Spirochaeta thermophila DSM 6192] (110 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,514 Number of Sequences: 1700 Number of extensions: 1528 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 110 length of database: 492,079 effective HSP length: 65 effective length of query: 45 effective length of database: 381,579 effective search space: 17171055 effective search space used: 17171055 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718625|ref|YP_003874157.1| hypothetical protein STHERM_c09370 [Spirochaeta thermophila DSM 6192] (206 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 248,732 Number of Sequences: 1700 Number of extensions: 12023 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 206 length of database: 492,079 effective HSP length: 73 effective length of query: 133 effective length of database: 367,979 effective search space: 48941207 effective search space used: 48941207 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718626|ref|YP_003874158.1| hypothetical protein STHERM_c09380 [Spirochaeta thermophila DSM 6192] (288 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 230,841 Number of Sequences: 1700 Number of extensions: 8916 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 288 length of database: 492,079 effective HSP length: 76 effective length of query: 212 effective length of database: 362,879 effective search space: 76930348 effective search space used: 76930348 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718627|ref|YP_003874159.1| hypothetical protein STHERM_c09390 [Spirochaeta thermophila DSM 6192] (135 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 124,953 Number of Sequences: 1700 Number of extensions: 4656 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 0 length of query: 135 length of database: 492,079 effective HSP length: 68 effective length of query: 67 effective length of database: 376,479 effective search space: 25224093 effective search space used: 25224093 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718628|ref|YP_003874160.1| tolQ-type transport protein [Spirochaeta thermophila DSM 6192] (208 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 182,701 Number of Sequences: 1700 Number of extensions: 7090 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 208 length of database: 492,079 effective HSP length: 73 effective length of query: 135 effective length of database: 367,979 effective search space: 49677165 effective search space used: 49677165 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718629|ref|YP_003874161.1| hypothetical protein STHERM_c09410 [Spirochaeta thermophila DSM 6192] (338 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 317,261 Number of Sequences: 1700 Number of extensions: 13322 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 338 length of database: 492,079 effective HSP length: 77 effective length of query: 261 effective length of database: 361,179 effective search space: 94267719 effective search space used: 94267719 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718630|ref|YP_003874162.1| AIPM/Hcit synthase family transferase [Spirochaeta thermophila DSM 6192] (532 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 498,007 Number of Sequences: 1700 Number of extensions: 20788 Number of successful extensions: 48 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48 Number of HSP's gapped (non-prelim): 0 length of query: 532 length of database: 492,079 effective HSP length: 81 effective length of query: 451 effective length of database: 354,379 effective search space: 159824929 effective search space used: 159824929 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718631|ref|YP_003874163.1| fumarylacetoacetate hydrolase domain-containing protein 2A [Spirochaeta thermophila DSM 6192] (240 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430855|ref|NP_146924.2| fumarylacetoacetate hydrolase [Aer... 116 6e-28 >gi|118430855|ref|NP_146924.2| fumarylacetoacetate hydrolase [Aeropyrum pernix K1] Length = 286 Score = 116 bits (290), Expect = 6e-28 Identities = 76/209 (36%), Positives = 103/209 (49%), Gaps = 19/209 (9%) Query: 39 AEIVRSQELPEEPILFNKTPNVLIGPEDAIVLPAMAARYATPEDPERTDYEAELAVIIGR 98 AE R + ++ F+K L G + +V+P ++ E+ DYE E+ +IIG+ Sbjct: 87 AEHAREMGMSKQIAFFSKPVTSLTGHLNPVVVPPVS---------EKPDYEGEIVIIIGK 137 Query: 99 ECRNISPEEAPGVIFGYTCFNDVSQRNIQKRDKSGWWRGKSFDTFGPIGPVIVPAREIPD 158 +N S EA I GYT D++ R +Q D W K DT+GP+GPV D Sbjct: 138 RIKNASTAEAGKAIAGYTAGADITDRLLQ--DMMSWSMAKGLDTYGPVGPVATIIDSPDD 195 Query: 159 PHALRIRCRLNGRVVQDGSTGDMIFRIPEIISFISRHMTLEEGDIIATGTPQGVGP---- 214 L + LNG VQ G TGDMI IP+++S +S TL GDI+ TGTP GVG Sbjct: 196 LDGLCVHTWLNGEKVQRGCTGDMIVSIPDMVSRLSALATLRPGDIVFTGTPPGVGHARKP 255 Query: 215 ---LHPGDXXXXXXXXXXXLRNPVVAETP 240 L GD LRN +V +TP Sbjct: 256 PRYLRHGDELEVRVSGLPPLRNQIV-KTP 283 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.140 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 262,872 Number of Sequences: 1700 Number of extensions: 11848 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 1 length of query: 240 length of database: 492,079 effective HSP length: 74 effective length of query: 166 effective length of database: 366,279 effective search space: 60802314 effective search space used: 60802314 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718632|ref|YP_003874164.1| hypothetical protein STHERM_c09450 [Spirochaeta thermophila DSM 6192] (228 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601849|ref|NP_148390.1| hypothetical protein APE_2110 [Aero... 138 1e-34 >gi|14601849|ref|NP_148390.1| hypothetical protein APE_2110 [Aeropyrum pernix K1] Length = 247 Score = 138 bits (347), Expect = 1e-34 Identities = 90/236 (38%), Positives = 124/236 (52%), Gaps = 27/236 (11%) Query: 6 LWFLMLTATFVSVILLYRTMGKVGLFLWIPVSVIIANIQVVKTITLFGLTATLGNIVYAS 65 +W L+L A SV L+ LFL +++ ITL G G + Y+ Sbjct: 11 VWPLVLAAAVFSVALVSANYLSAKLFL----------VEIPGLITLVG---PAGVVAYSV 57 Query: 66 TFLVTDILSEIYGTREARKAVVMGFVSLLAMIVLTQFALWFVPGPDDF-SQEHLEAIFSL 124 TF+VTD++SE+YG R A V GF S + + LT A+ P P QE + Sbjct: 58 TFIVTDVVSEVYGRRAAGAVVAAGFASQIVALFLTAVAIASPPAPFSLVQQEEYAKVVMA 117 Query: 125 MPRIVLASLVAYLVSQFHDVWAFHFWKERFPS-WLWFRNNASTMVSQLLDSAIFSFLAF- 182 I++ASLVAY+VSQ+HDVWAFHFWK+ S WLW RNN ST VSQL+D+ +F LAF Sbjct: 118 GFNIIVASLVAYIVSQYHDVWAFHFWKKMTGSRWLWLRNNLSTWVSQLIDTVVFLSLAFY 177 Query: 183 ---------TGVYPFGVVVEIAV--TTYLFKWIVAALDTPFLYLATWLRRRDLVPG 227 + V P + A+ + Y+ K +A LDTP +YL +L + + G Sbjct: 178 IIPLLSPEASRVEPVSLSTLWAMIYSQYIIKLGIAVLDTPVVYLGVYLVKNYIESG 233 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.141 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 211,967 Number of Sequences: 1700 Number of extensions: 7811 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 1 length of query: 228 length of database: 492,079 effective HSP length: 74 effective length of query: 154 effective length of database: 366,279 effective search space: 56406966 effective search space used: 56406966 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718633|ref|YP_003874165.1| hypothetical protein STHERM_c09460 [Spirochaeta thermophila DSM 6192] (286 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.145 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 304,920 Number of Sequences: 1700 Number of extensions: 13757 Number of successful extensions: 64 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 0 length of query: 286 length of database: 492,079 effective HSP length: 76 effective length of query: 210 effective length of database: 362,879 effective search space: 76204590 effective search space used: 76204590 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718634|ref|YP_003874166.1| hypothetical protein STHERM_c09470 [Spirochaeta thermophila DSM 6192] (504 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.143 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 482,022 Number of Sequences: 1700 Number of extensions: 20832 Number of successful extensions: 97 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97 Number of HSP's gapped (non-prelim): 0 length of query: 504 length of database: 492,079 effective HSP length: 81 effective length of query: 423 effective length of database: 354,379 effective search space: 149902317 effective search space used: 149902317 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718635|ref|YP_003874167.1| ankyrin repeat-containing protein [Spirochaeta thermophila DSM 6192] (319 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 318,730 Number of Sequences: 1700 Number of extensions: 13901 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 319 length of database: 492,079 effective HSP length: 77 effective length of query: 242 effective length of database: 361,179 effective search space: 87405318 effective search space used: 87405318 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718636|ref|YP_003874168.1| hypothetical protein STHERM_c09490 [Spirochaeta thermophila DSM 6192] (260 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.142 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 252,151 Number of Sequences: 1700 Number of extensions: 10647 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 260 length of database: 492,079 effective HSP length: 75 effective length of query: 185 effective length of database: 364,579 effective search space: 67447115 effective search space used: 67447115 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718637|ref|YP_003874169.1| hypothetical protein STHERM_c09500 [Spirochaeta thermophila DSM 6192] (423 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 387,998 Number of Sequences: 1700 Number of extensions: 16710 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 0 length of query: 423 length of database: 492,079 effective HSP length: 79 effective length of query: 344 effective length of database: 357,779 effective search space: 123075976 effective search space used: 123075976 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718638|ref|YP_003874170.1| hypothetical protein STHERM_c09510 [Spirochaeta thermophila DSM 6192] (413 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 321,757 Number of Sequences: 1700 Number of extensions: 12330 Number of successful extensions: 90 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90 Number of HSP's gapped (non-prelim): 0 length of query: 413 length of database: 492,079 effective HSP length: 79 effective length of query: 334 effective length of database: 357,779 effective search space: 119498186 effective search space used: 119498186 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718639|ref|YP_003874171.1| hypothetical protein STHERM_c09520 [Spirochaeta thermophila DSM 6192] (630 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.134 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 464,069 Number of Sequences: 1700 Number of extensions: 19402 Number of successful extensions: 99 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99 Number of HSP's gapped (non-prelim): 0 length of query: 630 length of database: 492,079 effective HSP length: 82 effective length of query: 548 effective length of database: 352,679 effective search space: 193268092 effective search space used: 193268092 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718640|ref|YP_003874172.1| HAMP domain-containing protein [Spirochaeta thermophila DSM 6192] (1530 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,564,775 Number of Sequences: 1700 Number of extensions: 73988 Number of successful extensions: 197 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 197 Number of HSP's gapped (non-prelim): 0 length of query: 1530 length of database: 492,079 effective HSP length: 89 effective length of query: 1441 effective length of database: 340,779 effective search space: 491062539 effective search space used: 491062539 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 98 (42.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718641|ref|YP_003874173.1| hypothetical protein STHERM_c09540 [Spirochaeta thermophila DSM 6192] (315 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 337,606 Number of Sequences: 1700 Number of extensions: 15838 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 315 length of database: 492,079 effective HSP length: 77 effective length of query: 238 effective length of database: 361,179 effective search space: 85960602 effective search space used: 85960602 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718642|ref|YP_003874174.1| hypothetical protein STHERM_c09550 [Spirochaeta thermophila DSM 6192] (80 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.144 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,017 Number of Sequences: 1700 Number of extensions: 3248 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 80 length of database: 492,079 effective HSP length: 50 effective length of query: 30 effective length of database: 407,079 effective search space: 12212370 effective search space used: 12212370 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718643|ref|YP_003874175.1| hypothetical protein STHERM_c09560 [Spirochaeta thermophila DSM 6192] (178 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 185,706 Number of Sequences: 1700 Number of extensions: 7842 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 178 length of database: 492,079 effective HSP length: 71 effective length of query: 107 effective length of database: 371,379 effective search space: 39737553 effective search space used: 39737553 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718644|ref|YP_003874176.1| exported protein [Spirochaeta thermophila DSM 6192] (147 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.142 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 162,111 Number of Sequences: 1700 Number of extensions: 7032 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 147 length of database: 492,079 effective HSP length: 69 effective length of query: 78 effective length of database: 374,779 effective search space: 29232762 effective search space used: 29232762 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718645|ref|YP_003874177.1| hypothetical protein STHERM_c09580 [Spirochaeta thermophila DSM 6192] (83 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.311 0.135 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,748 Number of Sequences: 1700 Number of extensions: 3456 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 83 length of database: 492,079 effective HSP length: 53 effective length of query: 30 effective length of database: 401,979 effective search space: 12059370 effective search space used: 12059370 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718646|ref|YP_003874178.1| exodeoxyribonuclease VII large subunit [Spirochaeta thermophila DSM 6192] (418 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 396,342 Number of Sequences: 1700 Number of extensions: 17277 Number of successful extensions: 63 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63 Number of HSP's gapped (non-prelim): 0 length of query: 418 length of database: 492,079 effective HSP length: 79 effective length of query: 339 effective length of database: 357,779 effective search space: 121287081 effective search space used: 121287081 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718647|ref|YP_003874179.1| hypothetical protein STHERM_c09600 [Spirochaeta thermophila DSM 6192] (497 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.140 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 459,067 Number of Sequences: 1700 Number of extensions: 19535 Number of successful extensions: 94 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94 Number of HSP's gapped (non-prelim): 0 length of query: 497 length of database: 492,079 effective HSP length: 81 effective length of query: 416 effective length of database: 354,379 effective search space: 147421664 effective search space used: 147421664 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718648|ref|YP_003874180.1| hypothetical protein STHERM_c09610 [Spirochaeta thermophila DSM 6192] (305 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 340,888 Number of Sequences: 1700 Number of extensions: 16113 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 0 length of query: 305 length of database: 492,079 effective HSP length: 76 effective length of query: 229 effective length of database: 362,879 effective search space: 83099291 effective search space used: 83099291 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718649|ref|YP_003874181.1| polysaccharide biosynthesis protein [Spirochaeta thermophila DSM 6192] (228 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 252,813 Number of Sequences: 1700 Number of extensions: 11278 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 228 length of database: 492,079 effective HSP length: 74 effective length of query: 154 effective length of database: 366,279 effective search space: 56406966 effective search space used: 56406966 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718650|ref|YP_003874182.1| methyltransferase [Spirochaeta thermophila DSM 6192] (550 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.143 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 493,034 Number of Sequences: 1700 Number of extensions: 21119 Number of successful extensions: 65 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65 Number of HSP's gapped (non-prelim): 0 length of query: 550 length of database: 492,079 effective HSP length: 81 effective length of query: 469 effective length of database: 354,379 effective search space: 166203751 effective search space used: 166203751 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718651|ref|YP_003874183.1| CarB family protein [Spirochaeta thermophila DSM 6192] (536 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 575,338 Number of Sequences: 1700 Number of extensions: 26898 Number of successful extensions: 107 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107 Number of HSP's gapped (non-prelim): 0 length of query: 536 length of database: 492,079 effective HSP length: 81 effective length of query: 455 effective length of database: 354,379 effective search space: 161242445 effective search space used: 161242445 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718652|ref|YP_003874184.1| hypothetical protein STHERM_c09650 [Spirochaeta thermophila DSM 6192] (339 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 346,429 Number of Sequences: 1700 Number of extensions: 15861 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 0 length of query: 339 length of database: 492,079 effective HSP length: 77 effective length of query: 262 effective length of database: 361,179 effective search space: 94628898 effective search space used: 94628898 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718653|ref|YP_003874185.1| hypothetical protein STHERM_c09660 [Spirochaeta thermophila DSM 6192] (164 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.143 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 158,609 Number of Sequences: 1700 Number of extensions: 6538 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 164 length of database: 492,079 effective HSP length: 70 effective length of query: 94 effective length of database: 373,079 effective search space: 35069426 effective search space used: 35069426 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718654|ref|YP_003874186.1| flagellar filament outer layer protein [Spirochaeta thermophila DSM 6192] (342 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 319,602 Number of Sequences: 1700 Number of extensions: 14389 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 342 length of database: 492,079 effective HSP length: 77 effective length of query: 265 effective length of database: 361,179 effective search space: 95712435 effective search space used: 95712435 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718655|ref|YP_003874187.1| hypothetical protein STHERM_c09680 [Spirochaeta thermophila DSM 6192] (214 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 234,373 Number of Sequences: 1700 Number of extensions: 10091 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 214 length of database: 492,079 effective HSP length: 73 effective length of query: 141 effective length of database: 367,979 effective search space: 51885039 effective search space used: 51885039 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718656|ref|YP_003874188.1| hypothetical protein STHERM_c09690 [Spirochaeta thermophila DSM 6192] (192 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.144 0.481 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 225,303 Number of Sequences: 1700 Number of extensions: 10845 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 192 length of database: 492,079 effective HSP length: 72 effective length of query: 120 effective length of database: 369,679 effective search space: 44361480 effective search space used: 44361480 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718657|ref|YP_003874189.1| hypothetical protein STHERM_c09700 [Spirochaeta thermophila DSM 6192] (360 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431794|ref|NP_148487.2| aspartate aminotransferase [Aeropy... 72 2e-14 gi|118431696|ref|NP_148337.2| threonine-phosphate decarboxylase ... 70 8e-14 gi|14602153|ref|NP_148701.1| aspartate aminotransferase [Aeropyr... 69 1e-13 gi|118430916|ref|NP_147018.2| alanine glyoxylate transaminase [A... 60 8e-11 gi|118431147|ref|NP_147407.2| aspartate aminotransferase [Aeropy... 57 5e-10 >gi|118431794|ref|NP_148487.2| aspartate aminotransferase [Aeropyrum pernix K1] Length = 405 Score = 72.0 bits (175), Expect = 2e-14 Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 23/223 (10%) Query: 73 VPSDWLMALNGTSEGILLLSLCYLSPGDSVLIVSPTYQEYERAALLMEARVHH--HRLEE 130 V + ++A G I L YL PGD V+I P+Y Y + A L AR + + E Sbjct: 95 VSPEEVIATTGAKTAIFLGMALYLRPGDEVIIPDPSYYAYAQVAKLFGARPVYVPMKFEP 154 Query: 131 RALFGLHTERLEDDIRRIRPRLLWIGSPNNPTATHLTQEQVREILSVCESTGTLFILDEA 190 F E +E + + R++ + +P+NPT + +QV I + G + + DE Sbjct: 155 GLGFRFDIEGIERAVSE-KTRMIVVNNPHNPTGSVFPPDQVEAIHDIARRRGLIILADEI 213 Query: 191 YANFLPSGPLSPLQPFVRS-------GHLAVLRSMTKDYLLTPLRLGYIVAHPDII-STL 242 Y NFL + +PF + +L + +K + +T RLGY+V ++I L Sbjct: 214 YDNFLYTE-----KPFKSTLSLPDWRENLVYVNGFSKTFSMTGWRLGYVVLRREVIPKAL 268 Query: 243 KKAQPPWSVNIP-AQEAGRAAIRITDVFARQWRAARNLARDLR 284 A +S AQ+AG AA+R W R + + R Sbjct: 269 DLAVTIYSCPPSIAQKAGVAALR------GDWGPVREMVEEFR 305 >gi|118431696|ref|NP_148337.2| threonine-phosphate decarboxylase [Aeropyrum pernix K1] Length = 354 Score = 70.1 bits (170), Expect = 8e-14 Identities = 79/290 (27%), Positives = 132/290 (45%), Gaps = 25/290 (8%) Query: 55 YPDTAAALLIDALSTHLSVPSDWLMALNGTSEGILLLSLCYLSPGDSVLIVSPTYQEYER 114 YPD +A++ + + ++ LNG +E IL L+ L P S+++V P + ++ Sbjct: 42 YPDYEYLGFREAVAGFYRIDLERVIPLNGAAE-ILPLAAAALRPR-SIVVVEPNFGDHTI 99 Query: 115 AALLMEARVHHHRLEERA-LFGLHTERLEDDIRRI-RPRLLWIGSPNNPTATHLTQEQVR 172 AL H +L E F L + R + L+ + +PNNPT + + +R Sbjct: 100 LALSAGIPCHSVQLREAGDRFSLEPGAVCSLPRSVVEGSLIVLSNPNNPTGSAAARGDLR 159 Query: 173 EILSVCESTGTL-FILDEAYANFLPSGPLSPLQPFVRS--GHLAVLRSMTKDYLLTPLRL 229 E+ + G L ++DE++A+ LS ++ + S + V RS+TK L LR+ Sbjct: 160 ELAACATLRGALAVVVDESFAD------LSRVESVLGSVPEGVIVARSLTKTLALQGLRI 213 Query: 230 GYIVAHPD---IISTLKKAQPPWSVN-----IPAQEAGRAAIRITDVFARQWRAARNLAR 281 G+ A+ D + + L A+ PW+VN + + G A + AR A L Sbjct: 214 GF--AYTDDAALAARLDMARQPWNVNSIAALLVERLLGDMASEVKGHIARAIEAIEGLKP 271 Query: 282 DLRHAIESLGYPTIPSECNFFLSHVGDSSGITA--ALQTLGVVVRDCSSF 329 L A+ +LG S+ F L + + A L+ GV +RD SSF Sbjct: 272 RLYSAVSALGAKPYSSQAPFILVRHRRRNPLFARCLLEAAGVYIRDASSF 321 >gi|14602153|ref|NP_148701.1| aspartate aminotransferase [Aeropyrum pernix K1] Length = 397 Score = 69.3 bits (168), Expect = 1e-13 Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 19/173 (10%) Query: 73 VPSDWLMALNGTSEGILLLSLCYLSPGDSVLIVSPTYQEYE-----RAALLMEA---RVH 124 V S+ ++ G++E LL + ++PGD VL P Y + R A ++EA R H Sbjct: 93 VDSEQVIITTGSAEANLLSVISLVAPGDRVLFDMPNYMQIHGLLRMRGARILEAWRKREH 152 Query: 125 HHRLEERALFGLHTERLEDDIRRIRPRLLWIGSPNNPTATHLTQEQVREILSVCESTGTL 184 +L+ GL+ E I+R +PR ++I +PNNPT + + + EI + TG++ Sbjct: 153 RWKLDP----GLYAEL----IKREKPRAVFITNPNNPTGSVAGPKALGEIAAEAARTGSI 204 Query: 185 FILDEAYANFLPSGPLSP--LQPFVRSG-HLAVLRSMTKDYLLTPLRLGYIVA 234 + DE Y S +P L+P + G H + ++K Y L LR+G+ A Sbjct: 205 LVFDELYRGLEHSTEPAPTVLEPALEQGAHAISVSGLSKVYGLPGLRIGWAAA 257 >gi|118430916|ref|NP_147018.2| alanine glyoxylate transaminase [Aeropyrum pernix K1] Length = 403 Score = 60.1 bits (144), Expect = 8e-11 Identities = 47/172 (27%), Positives = 88/172 (51%), Gaps = 8/172 (4%) Query: 78 LMALNGTSEGILLLSLCYLSPGDSVLIVSPTYQEYERAALLMEARVHHHRLEERAL-FGL 136 L+ G+ E + L +L LSPGD V++ P Y + AR+ ++++ L G+ Sbjct: 97 LLVTTGSQEALFLTALSTLSPGDVVIMEEPGYLAAINVFKALGARIVPVPVDDKGLNTGV 156 Query: 137 HTERLED-DIRRIRPRLLWIG-SPNNPTATHLTQEQVREILSVCESTGTLFILDEAYAN- 193 E L+ D ++P+L++ + NNP T + ++ RE+L + + L I D+ Y++ Sbjct: 157 LAETLDRLDAEGVKPKLVYTNPTCNNPNGTTMPLDRRRELLQLASNYDMLVIEDDPYSHI 216 Query: 194 -FLPSGPLSPLQPFVRSGHLAVLRSMTKDYLLTP-LRLGYIVAHPDIISTLK 243 F +G PLQ G + + + +K +L P LRLG +A ++ + ++ Sbjct: 217 AFEKTGEEVPLQALDSEGRVVYVTTFSK--ILAPGLRLGLTLAPSEVTARIE 266 >gi|118431147|ref|NP_147407.2| aspartate aminotransferase [Aeropyrum pernix K1] Length = 401 Score = 57.4 bits (137), Expect = 5e-10 Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 5/191 (2%) Query: 55 YPDTAAALLID--ALSTHLSVPSDWLMALNGTSEGILLLSLCYLSPGDSVLIVSPTYQEY 112 Y D A+ D AL P D L+ G LS L PGD V+++ PTY Y Sbjct: 75 YADVREAIAEDLAALGGPRMEPDDILVTAGGQEAMFATLSTI-LEPGDKVILMDPTYFGY 133 Query: 113 ERAALLMEARVHHHRLEERALFGLHTERLEDDIRRIRPRLLWIGSPNNPTATHLTQEQVR 172 + RV R F ERL++ R ++ + SP+NPT L+ E + Sbjct: 134 RPIVEYLGGRVEWVRAPPSLGFQPDEERLKEAFTRDVKAVVLV-SPDNPTGRLLSTESAK 192 Query: 173 EILSVCESTGTLFILDEAYANFLPSGPLSPLQPFVRSGHLAVLRSMTKDYLLTPLRLGYI 232 + + TG + DEAY + G L +++ + +KD RLGY+ Sbjct: 193 LVADLAVDTGAWIVYDEAYKTLVFEGEHVYLYKLAPDNTISI-NTFSKDPGFPGWRLGYL 251 Query: 233 VAHPDIISTLK 243 I+ ++ Sbjct: 252 YGPGWIVGKIR 262 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 326,510 Number of Sequences: 1700 Number of extensions: 13479 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 5 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 5 length of query: 360 length of database: 492,079 effective HSP length: 78 effective length of query: 282 effective length of database: 359,479 effective search space: 101373078 effective search space used: 101373078 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718658|ref|YP_003874190.1| hypothetical protein STHERM_c09710 [Spirochaeta thermophila DSM 6192] (134 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.496 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 117,638 Number of Sequences: 1700 Number of extensions: 3943 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 134 length of database: 492,079 effective HSP length: 68 effective length of query: 66 effective length of database: 376,479 effective search space: 24847614 effective search space used: 24847614 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718659|ref|YP_003874191.1| hypothetical protein STHERM_c09720 [Spirochaeta thermophila DSM 6192] (219 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.143 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 256,035 Number of Sequences: 1700 Number of extensions: 11661 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 219 length of database: 492,079 effective HSP length: 73 effective length of query: 146 effective length of database: 367,979 effective search space: 53724934 effective search space used: 53724934 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718660|ref|YP_003874192.1| hypothetical protein STHERM_c09730 [Spirochaeta thermophila DSM 6192] (239 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 242,758 Number of Sequences: 1700 Number of extensions: 10488 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 239 length of database: 492,079 effective HSP length: 74 effective length of query: 165 effective length of database: 366,279 effective search space: 60436035 effective search space used: 60436035 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718661|ref|YP_003874193.1| PhoH-like protein [Spirochaeta thermophila DSM 6192] (323 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431883|ref|NP_148629.2| hypothetical protein APE_2464.1 [A... 71 3e-14 >gi|118431883|ref|NP_148629.2| hypothetical protein APE_2464.1 [Aeropyrum pernix K1] Length = 387 Score = 71.2 bits (173), Expect = 3e-14 Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 3/175 (1%) Query: 135 MVFAIGPAGTGKTFLAVAHALEELISRKRKKLVLTRPVVEA--GERLGFLPGDLLQKINP 192 +V GP GTGK+ ++ + + + +++VL RPV++ G L + D Sbjct: 34 LVGVFGPTGTGKSLFSIVYGVSMTAEGRFRRVVLARPVIDVVTGRELTVMT-DAQSYRRL 92 Query: 193 YLKPLYDAIDALIPLEMYQKMEEQRMIEIIPLAYMRGRSLDNSYIILDEAQNTTREQMKM 252 + L D + + E +++ + ++ ++RGR+ DNS II+D++Q+ E + Sbjct: 93 AAEYLMDILSGFLGEERVREILSSDSLVLVDPHFLRGRTFDNSVIIVDDSQSMPPEAIVE 152 Query: 253 FLTRLGQNSKAVITGDVTQIDLPDPGRSGLLHAESILQGIDEIRFSYFTREDVVR 307 +TRLG SK ++ GD +PG G A IL +D+VR Sbjct: 153 IITRLGTGSKLIVIGDPVFQRTSEPGLDGASMAREILSNEPTAEVVDLGLKDIVR 207 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 323,476 Number of Sequences: 1700 Number of extensions: 14228 Number of successful extensions: 72 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 1 length of query: 323 length of database: 492,079 effective HSP length: 77 effective length of query: 246 effective length of database: 361,179 effective search space: 88850034 effective search space used: 88850034 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718662|ref|YP_003874194.1| hypothetical protein STHERM_c09750 [Spirochaeta thermophila DSM 6192] (746 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 594,619 Number of Sequences: 1700 Number of extensions: 23062 Number of successful extensions: 94 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94 Number of HSP's gapped (non-prelim): 0 length of query: 746 length of database: 492,079 effective HSP length: 84 effective length of query: 662 effective length of database: 349,279 effective search space: 231222698 effective search space used: 231222698 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718663|ref|YP_003874195.1| transcriptional regulator [Spirochaeta thermophila DSM 6192] (148 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.133 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 141,035 Number of Sequences: 1700 Number of extensions: 5101 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 148 length of database: 492,079 effective HSP length: 69 effective length of query: 79 effective length of database: 374,779 effective search space: 29607541 effective search space used: 29607541 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718664|ref|YP_003874196.1| hypothetical protein STHERM_c09770 [Spirochaeta thermophila DSM 6192] (237 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.143 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 224,709 Number of Sequences: 1700 Number of extensions: 9063 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 237 length of database: 492,079 effective HSP length: 74 effective length of query: 163 effective length of database: 366,279 effective search space: 59703477 effective search space used: 59703477 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718665|ref|YP_003874197.1| hypothetical protein STHERM_c09780 [Spirochaeta thermophila DSM 6192] (654 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 659,293 Number of Sequences: 1700 Number of extensions: 31141 Number of successful extensions: 119 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 119 Number of HSP's gapped (non-prelim): 0 length of query: 654 length of database: 492,079 effective HSP length: 83 effective length of query: 571 effective length of database: 350,979 effective search space: 200409009 effective search space used: 200409009 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718666|ref|YP_003874198.1| glyceraldehyde-3-phosphate dehydrogenase [Spirochaeta thermophila DSM 6192] (337 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 315,819 Number of Sequences: 1700 Number of extensions: 13159 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 337 length of database: 492,079 effective HSP length: 77 effective length of query: 260 effective length of database: 361,179 effective search space: 93906540 effective search space used: 93906540 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718667|ref|YP_003874199.1| phosphoglycerate kinase [Spirochaeta thermophila DSM 6192] (392 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430918|ref|NP_147020.2| phosphoglycerate kinase [Aeropyrum... 223 6e-60 >gi|118430918|ref|NP_147020.2| phosphoglycerate kinase [Aeropyrum pernix K1] Length = 415 Score = 223 bits (568), Expect = 6e-60 Identities = 146/403 (36%), Positives = 215/403 (53%), Gaps = 22/403 (5%) Query: 3 LKTVKDIEVRGKKVLVRVDFNVPLKDG-VITDDTRIRAALPTLQYLLDQGAALIVMSHLG 61 L T+ D++VRGKKV+VR D N P+ +G I DD+RI A TL+ L D+GAA++ +SH G Sbjct: 10 LATLDDVDVRGKKVIVRFDLNSPVGNGGEILDDSRIAEAAGTLRELCDRGAAVVALSHQG 69 Query: 62 RPKGERKPEYSLSPVAERLGELLGREVKMAPDCVGPEVERMAEALTPGEVLLLENVRFHK 121 RP SL A L G EV+ D +GPE R +L PGE +LL+N R Sbjct: 70 RPL--ESDFVSLERHASLLSRYSGVEVRFVMDVIGPEALRTVASLRPGEAVLLDNTRIIS 127 Query: 122 EETSNDPD-------FAKKLASLGEVYVNDAFGSAHRGHASTEGIAHLLPAAAGFLMEKE 174 E+ +L+ L +YVN+AF ++HR AS G ++LP+A G ++EKE Sbjct: 128 EDFIEAEGTVHARGIMVTRLSKLANMYVNEAFSASHRSQASIVGFPYVLPSAGGRVLEKE 187 Query: 175 VKFLSYVLENPEKPFVAVIGGAKVSTKIGVLESLLSKCTA--MVIGGGMAYTFLKVQGHS 232 ++ L+ + + E+P V V+GGAK+ + +++ L S A ++ G + FL +G+ Sbjct: 188 IRSLNRAVSSGERPKVVVLGGAKLKDAVRIVDYLSSSGVADEVLTTGLVGLLFLYARGYR 247 Query: 233 IG---NSLYEEESADTARSFLEKAGELGVEVILPEDHLVASEFSEQAKAEYVDAVDIPEG 289 + L E++ + A + + E G V P D +V E Y+ D Sbjct: 248 LPRDVTKLLEKKGGEEAIAKARRIVEEGRRVRTPIDFVV-----EVGDKIYIKPADELTE 302 Query: 290 KVGMDIGPRTVEKACARIRGAKTVVWNGPMGVFEFPAFAEGTRKVAEAIAECKGTTVVGG 349 V DIGP TVE A++RGA+ +V GP GV E P F GT ++ +A TV GG Sbjct: 303 GVPKDIGPSTVEYFRAKMRGARVIVMRGPAGVIEDPRFRRGTVELVKAALSSGAYTVFGG 362 Query: 350 GDSVAAANAF--GVADKMTHVSTGGGASLEFLEGKPLPGIEVL 390 G A ++ K+ H+STGGGA L +L G+PLPG++ L Sbjct: 363 GHFRAILRDLPEHLSSKVGHLSTGGGALLYYLSGRPLPGVKAL 405 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 412,305 Number of Sequences: 1700 Number of extensions: 19165 Number of successful extensions: 95 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89 Number of HSP's gapped (non-prelim): 1 length of query: 392 length of database: 492,079 effective HSP length: 79 effective length of query: 313 effective length of database: 357,779 effective search space: 111984827 effective search space used: 111984827 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718668|ref|YP_003874200.1| triosephosphate isomerase [Spirochaeta thermophila DSM 6192] (253 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 254,017 Number of Sequences: 1700 Number of extensions: 11259 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 0 length of query: 253 length of database: 492,079 effective HSP length: 75 effective length of query: 178 effective length of database: 364,579 effective search space: 64895062 effective search space used: 64895062 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718669|ref|YP_003874201.1| hypothetical protein STHERM_c09820 [Spirochaeta thermophila DSM 6192] (128 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.311 0.126 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,654 Number of Sequences: 1700 Number of extensions: 3437 Number of successful extensions: 4 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 128 length of database: 492,079 effective HSP length: 67 effective length of query: 61 effective length of database: 378,179 effective search space: 23068919 effective search space used: 23068919 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718670|ref|YP_003874202.1| hypothetical protein STHERM_c09830 [Spirochaeta thermophila DSM 6192] (144 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 118,245 Number of Sequences: 1700 Number of extensions: 3441 Number of successful extensions: 2 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 144 length of database: 492,079 effective HSP length: 69 effective length of query: 75 effective length of database: 374,779 effective search space: 28108425 effective search space used: 28108425 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718671|ref|YP_003874203.1| molecular chaperone protein [Spirochaeta thermophila DSM 6192] (271 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 286,329 Number of Sequences: 1700 Number of extensions: 12953 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 271 length of database: 492,079 effective HSP length: 75 effective length of query: 196 effective length of database: 364,579 effective search space: 71457484 effective search space used: 71457484 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718672|ref|YP_003874204.1| basic membrane protein [Spirochaeta thermophila DSM 6192] (346 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.132 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 292,632 Number of Sequences: 1700 Number of extensions: 11363 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 346 length of database: 492,079 effective HSP length: 78 effective length of query: 268 effective length of database: 359,479 effective search space: 96340372 effective search space used: 96340372 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718673|ref|YP_003874205.1| N-utilization substance protein B [Spirochaeta thermophila DSM 6192] (136 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 139,923 Number of Sequences: 1700 Number of extensions: 6075 Number of successful extensions: 27 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 0 length of query: 136 length of database: 492,079 effective HSP length: 68 effective length of query: 68 effective length of database: 376,479 effective search space: 25600572 effective search space used: 25600572 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718674|ref|YP_003874206.1| hypothetical protein STHERM_c09870 [Spirochaeta thermophila DSM 6192] (535 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 526,597 Number of Sequences: 1700 Number of extensions: 23948 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 0 length of query: 535 length of database: 492,079 effective HSP length: 81 effective length of query: 454 effective length of database: 354,379 effective search space: 160888066 effective search space used: 160888066 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718675|ref|YP_003874207.1| methionine aminopeptidase [Spirochaeta thermophila DSM 6192] (264 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431332|ref|NP_147721.2| methionine aminopeptidase [Aeropyr... 90 7e-20 gi|118431092|ref|NP_147302.2| Xaa-Pro dipeptidase [Aeropyrum per... 68 3e-13 >gi|118431332|ref|NP_147721.2| methionine aminopeptidase [Aeropyrum pernix K1] Length = 307 Score = 89.7 bits (221), Expect = 7e-20 Identities = 65/203 (32%), Positives = 95/203 (46%), Gaps = 16/203 (7%) Query: 15 ESARILSQVLKILRASIGPGIPTRELDRIARKEIAAFGARPAFLGYMDFPAAVCISVNEV 74 E+ RI ++ + + G R + + ++I + GA PAF IS++ V Sbjct: 11 EAGRIAAEAREYAAGLVEAGASCRRVCELVEEKIRSLGAVPAF--------PCNISLDSV 62 Query: 75 VIH---GIPDGRRLKEGDIVSIDCGVDYEGFFSDAAFTVPVGGVAEEVRKLLEVTEESLY 131 H G+ D + G +V +D G EG+ +D A TV +GG R L+E + E L Sbjct: 63 AAHYTPGLRDDCSIGGGSVVKLDVGAAVEGYIADTAVTVDLGGGH---RSLVEASVEGLR 119 Query: 132 LGIAQARPGNRIHDVSRAVYRHARAHGLGVVREFCGHGVG-LSPHEEPQIPNYVGK-GRS 189 + +PG R +D+ RAV + R G VV+ GH + + H IPNY + Sbjct: 120 AAMKVLKPGARFYDIGRAVEQAVRRRGFKVVKNLSGHTIDRYTIHAGLSIPNYGDRTAWI 179 Query: 190 PRIMPGMVLAIEPMFTLGADYVR 212 RI PGM AIEP T G VR Sbjct: 180 HRIRPGMTFAIEPFATNGRGMVR 202 >gi|118431092|ref|NP_147302.2| Xaa-Pro dipeptidase [Aeropyrum pernix K1] Length = 373 Score = 67.8 bits (164), Expect = 3e-13 Identities = 62/214 (28%), Positives = 84/214 (39%), Gaps = 10/214 (4%) Query: 4 LKSERELEGIRESARILSQVLKILRASIGPGIPTRELDRIARKEIAAFGARPAFLGYMDF 63 +K E E+ I E+ARI L+ + G+ RE+ I G F Sbjct: 150 VKEEWEIGLIAEAARIAEAALRRGIEELREGVSEREVAGAVVDVIMKSGGWGP-----SF 204 Query: 64 PAAVCISVNEVVIHGIPDGRRLKEGDIVSIDCGVDYEGFFSDAAFTVPVGGVAEEVRKLL 123 P V N + H RL V D G Y+G+ SD ++ G E R+L Sbjct: 205 PVIVAFGGNTALPHHHTGDARLPHASPVLFDLGSVYKGYMSDMTRSLWRGPGGAEYRRLE 264 Query: 124 EVTEESLYLGIAQARPGNRIHDVSRAVYRHARAHGLG-VVREFCGHGVGLSPHEEPQIPN 182 E+ E+ I PG +V +A G GHGVG+ HE P Sbjct: 265 ELVAEAQAEAIDSVAPGVEAWEVDKAARLRLSKEGFSKYFIHGTGHGVGVEIHENP---- 320 Query: 183 YVGKGRSPRIMPGMVLAIEPMFTLGADYVRILED 216 Y+ G S + PGMV+ IEP L Y +ED Sbjct: 321 YLRPGSSEELKPGMVVTIEPGVYLPGMYGVRIED 354 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.141 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 301,808 Number of Sequences: 1700 Number of extensions: 15178 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 2 length of query: 264 length of database: 492,079 effective HSP length: 75 effective length of query: 189 effective length of database: 364,579 effective search space: 68905431 effective search space used: 68905431 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718676|ref|YP_003874208.1| periplasmic serine protease DO [Spirochaeta thermophila DSM 6192] (488 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 500,754 Number of Sequences: 1700 Number of extensions: 24504 Number of successful extensions: 83 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83 Number of HSP's gapped (non-prelim): 0 length of query: 488 length of database: 492,079 effective HSP length: 80 effective length of query: 408 effective length of database: 356,079 effective search space: 145280232 effective search space used: 145280232 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718677|ref|YP_003874209.1| hypothetical protein STHERM_c09900 [Spirochaeta thermophila DSM 6192] (344 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 371,893 Number of Sequences: 1700 Number of extensions: 17492 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 344 length of database: 492,079 effective HSP length: 78 effective length of query: 266 effective length of database: 359,479 effective search space: 95621414 effective search space used: 95621414 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718678|ref|YP_003874210.1| hypothetical protein STHERM_c09910 [Spirochaeta thermophila DSM 6192] (211 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 233,777 Number of Sequences: 1700 Number of extensions: 9888 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 211 length of database: 492,079 effective HSP length: 73 effective length of query: 138 effective length of database: 367,979 effective search space: 50781102 effective search space used: 50781102 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718679|ref|YP_003874211.1| bifunctional protein FolD [Spirochaeta thermophila DSM 6192] (297 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 303,561 Number of Sequences: 1700 Number of extensions: 13906 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 0 length of query: 297 length of database: 492,079 effective HSP length: 76 effective length of query: 221 effective length of database: 362,879 effective search space: 80196259 effective search space used: 80196259 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718680|ref|YP_003874212.1| hypothetical protein STHERM_c09930 [Spirochaeta thermophila DSM 6192] (267 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601982|ref|NP_148527.1| hypothetical protein APE_2308 [Aero... 79 2e-16 >gi|14601982|ref|NP_148527.1| hypothetical protein APE_2308 [Aeropyrum pernix K1] Length = 283 Score = 78.6 bits (192), Expect = 2e-16 Identities = 69/270 (25%), Positives = 121/270 (44%), Gaps = 21/270 (7%) Query: 3 VDTQSAFDDRNIPIDKVGIKGLTYPVTVLDKRHRIQHTVATVNMFANLPHHFRGTHMSRF 62 +D Q + + +++VG +G+ + + + +++F +L RG H+SR Sbjct: 1 MDVQDLKPPKPLYLERVGFRGVRRRALLETPEGPVTLDLE-LDVFVDLDRSKRGVHLSRN 59 Query: 63 VEVFQAHYKNIQMKGFLSMLEDVRKAL-----DAEAAFVDLSFPYFIEKEAPVSRQKSLL 117 +E +A + + +L + K L AE A V Y+I+ EA + + + Sbjct: 60 IEAVEAVVSERRARSIEGLLRSIAKELLSRHGYAEKATVRARTRYYIDLEAAGVKGREPV 119 Query: 118 EYRCSYIGELNGEHRSFFVGIEVPINTVCPCSKEI----------SRFGAHNQRGIVRLT 167 + + +G R + V + V TVCP ++ SR +H+Q+ +++ T Sbjct: 120 DVAVTVSLTRSGGER-WRVAVSVKGMTVCPSAQSTIAEAEGISDPSRAPSHSQKVLLKGT 178 Query: 168 VQLGPFFW-IEDMIEEIEASASAGIYTLLKREDEKFITEHGYEHPRFVEDVAREVVLRVE 226 V G IED+ + S SA +TLLK+ E + + P FVEDV RE R+ Sbjct: 179 VDTGKVMVRIEDLARALLQSFSAPTFTLLKKPQEARLILEAFTRPMFVEDVVREAAWRIA 238 Query: 227 RFAAFP---WFRVEVENMESIHNHNAYACI 253 P +VE ++ESIH H+ A + Sbjct: 239 AIPYIPGEALLQVEAVSLESIHPHDLVAML 268 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 244,891 Number of Sequences: 1700 Number of extensions: 9603 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 1 length of query: 267 length of database: 492,079 effective HSP length: 75 effective length of query: 192 effective length of database: 364,579 effective search space: 69999168 effective search space used: 69999168 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718681|ref|YP_003874213.1| phosphoribosylaminoimidazolecarboxamideformyltransferase [Spirochaeta thermophila DSM 6192] (228 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 229,104 Number of Sequences: 1700 Number of extensions: 10094 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 0 length of query: 228 length of database: 492,079 effective HSP length: 74 effective length of query: 154 effective length of database: 366,279 effective search space: 56406966 effective search space used: 56406966 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718682|ref|YP_003874214.1| phosphoribosylaminoimidazolecarboxamideformyltransferase [Spirochaeta thermophila DSM 6192] (418 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 447,566 Number of Sequences: 1700 Number of extensions: 21230 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 418 length of database: 492,079 effective HSP length: 79 effective length of query: 339 effective length of database: 357,779 effective search space: 121287081 effective search space used: 121287081 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718683|ref|YP_003874215.1| hypothetical protein STHERM_c09960 [Spirochaeta thermophila DSM 6192] (448 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431496|ref|NP_148004.2| MiaB-like protein [Aeropyrum perni... 157 4e-40 >gi|118431496|ref|NP_148004.2| MiaB-like protein [Aeropyrum pernix K1] Length = 450 Score = 157 bits (398), Expect = 4e-40 Identities = 124/430 (28%), Positives = 194/430 (45%), Gaps = 20/430 (4%) Query: 2 RTYWVETYGCQMNKAESEALIRDLEEAGWGRASAPDEADVVVLNTCAVRQTAEERIAGRL 61 RTY++E YGC +++ ++ + LEEAG+ R + P++ADV+++NTCAVR E+RIA RL Sbjct: 18 RTYYLEVYGCSLSEFDALIMASRLEEAGYRRVARPEDADVILVNTCAVRLDTEQRIAERL 77 Query: 62 GYYRYLKKHGRFVLVLMGCMAERMKEEVLEAFPHVDVVVGTFQKKSFVRLLRE-RAXXXX 120 R ++V+ GC+ + V P ++ ++ R+L A Sbjct: 78 EKLRLQLPDRKYVVA--GCLVKARPGLVARLVPEASLLA----PQAVERVLDAVDALESG 131 Query: 121 XXXXXXXXXXXXYSFEKIHHSGPGFKAFVPIM--HGCNNFCSYCIVPYVRGREVSRHPSE 178 S ++ P A V +M GC CS+CI R + S P Sbjct: 132 RRLVVLDGRRDTRSMPQL----PITDAVVTVMIQEGCLGDCSFCITKVARRQVRSYSPRV 187 Query: 179 IFEEIEALLEKGVKEITLLGQNVNSYRFTWEGKEVRFAGLLREIVHRFPELPWLRFLTSH 238 I E + +EKG +EI L G +V Y GK A L+ I+ + +R Sbjct: 188 IVERVREAVEKGAREIRLTGTDVAVYGVDLPGKP-NLADLVAAILEKVEGDYRIRVGMMT 246 Query: 239 PKDLS---DELIEVMSASPSICKHLHLPVQHGSNRILGAMNRRYTREHYLNLVERIRTAM 295 P + D L++V + K+ HLPVQ G + +L M R YT Y + RI++ Sbjct: 247 PDQVEPYLDSLLDVYR-DERVYKYFHLPVQSGDDEVLKIMKRNYTVSEYKAIHRRIKSRF 305 Query: 296 PGIALTTDILVGFPGXXXXXXXXXXXXMRRVRFADAYTYYYNPRKGTRAYEWGDPIPLEV 355 P + TDI+VG PG + +RF + Y+ R T A + +P V Sbjct: 306 PDAMIATDIIVGHPGETWEAFWNTVRLVEELRFEKVHLAQYSLRPHTEAASM-EQVPDSV 364 Query: 356 KKERLDRVIRLQRELSLEWKQMRIGRMVDVLVEEVSRKREDEVLARTEQDEMVVFPASPE 415 KKER + ++ E+ LE +GR V LV E S RE + R + ++ P Sbjct: 365 KKERSRILGKIVAEIGLEINGSYVGRRVRALVTERS-WREGSMTGRLDNYTPIILPYEER 423 Query: 416 RIGRFARVQL 425 +GR+ ++ Sbjct: 424 AMGRWVYAEV 433 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.138 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 428,726 Number of Sequences: 1700 Number of extensions: 18260 Number of successful extensions: 66 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 2 length of query: 448 length of database: 492,079 effective HSP length: 80 effective length of query: 368 effective length of database: 356,079 effective search space: 131037072 effective search space used: 131037072 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718684|ref|YP_003874216.1| hypothetical protein STHERM_c09970 [Spirochaeta thermophila DSM 6192] (89 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,443 Number of Sequences: 1700 Number of extensions: 2016 Number of successful extensions: 5 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 89 length of database: 492,079 effective HSP length: 58 effective length of query: 31 effective length of database: 393,479 effective search space: 12197849 effective search space used: 12197849 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718685|ref|YP_003874217.1| hypothetical protein STHERM_c09980 [Spirochaeta thermophila DSM 6192] (307 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 255,253 Number of Sequences: 1700 Number of extensions: 10637 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 307 length of database: 492,079 effective HSP length: 77 effective length of query: 230 effective length of database: 361,179 effective search space: 83071170 effective search space used: 83071170 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718686|ref|YP_003874218.1| hypothetical protein STHERM_c09990 [Spirochaeta thermophila DSM 6192] (514 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 511,515 Number of Sequences: 1700 Number of extensions: 22287 Number of successful extensions: 67 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 0 length of query: 514 length of database: 492,079 effective HSP length: 81 effective length of query: 433 effective length of database: 354,379 effective search space: 153446107 effective search space used: 153446107 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718687|ref|YP_003874219.1| adenylosuccinate lyase [Spirochaeta thermophila DSM 6192] (477 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431603|ref|NP_148185.2| fumarate hydratase [Aeropyrum pern... 42 3e-05 >gi|118431603|ref|NP_148185.2| fumarate hydratase [Aeropyrum pernix K1] Length = 444 Score = 42.4 bits (98), Expect = 3e-05 Identities = 53/203 (26%), Positives = 82/203 (40%), Gaps = 20/203 (9%) Query: 110 YVHLGATSVDIMDTAAALRYRDAMRRVVLPLLLQVERILIELAEREAETPQV---GRTHG 166 +V++ +S D++ TA L A+ ++P L E I+ L EA+ +V GRTH Sbjct: 106 HVNMSQSSNDVIPTAIRLAAASAVLSELVPSL---ETIINSLGSAEAKYARVVKPGRTHL 162 Query: 167 QYAVPITFGYAVAEYVSRLGKSILRL-EDLSRDLRGKLSGAVGAYNATSLLVRDPRAFER 225 + A+P+TFG + + K + + E L L L G A + + R Sbjct: 163 RDALPVTFGQEMGAFKDAFSKDLAMVREALEAVLEVPLGG-----TAVGTGINAHPEYPR 217 Query: 226 RVLSRLGL---LPTDHATQXXXXXXXXXXXXXXNVAFGILA----NLADDLRHLQRSEIG 278 R +S L +P A A +A L+ DLR + Sbjct: 218 RAVSILAEKTGIPVKPAASRFRAMRLVTDLAMLTAAVRSVAIDLWRLSQDLRLMYSGPFT 277 Query: 279 EVQEAFGEKQV-GSSTMPHKRNP 300 + E ++V GSS MP K NP Sbjct: 278 GIAEVEIPQEVPGSSMMPGKVNP 300 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 432,793 Number of Sequences: 1700 Number of extensions: 17810 Number of successful extensions: 70 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 1 length of query: 477 length of database: 492,079 effective HSP length: 80 effective length of query: 397 effective length of database: 356,079 effective search space: 141363363 effective search space used: 141363363 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718688|ref|YP_003874220.1| inosine-5'-monophosphate dehydrogenase [Spirochaeta thermophila DSM 6192] (481 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431484|ref|NP_147986.2| inosine-5'-monophosphate dehydroge... 207 5e-55 gi|14600580|ref|NP_147097.1| hypothetical protein APE_0267 [Aero... 61 7e-11 gi|118431896|ref|NP_148644.2| hypothetical protein APE_2489.1 [A... 60 1e-10 gi|118431612|ref|NP_148203.2| hypothetical protein APE_1838.1 [A... 59 2e-10 gi|14600549|ref|NP_147066.1| hypothetical protein APE_0231 [Aero... 56 2e-09 gi|118431018|ref|NP_147193.2| hypothetical protein APE_0383.1 [A... 52 3e-08 gi|118431283|ref|NP_147639.2| hypothetical protein APE_0974.1 [A... 50 2e-07 >gi|118431484|ref|NP_147986.2| inosine-5'-monophosphate dehydrogenase [Aeropyrum pernix K1] Length = 433 Score = 207 bits (527), Expect = 5e-55 Identities = 153/468 (32%), Positives = 227/468 (48%), Gaps = 58/468 (12%) Query: 10 LSYDDILLLPGYADFLPSEARVEVELHPRLRLNIPILSAAMDTVTEKEMAIALALEGGLG 69 L++DD+ +LPG + P + + + + ++ P++S+ MDTVTE MA ALA G +G Sbjct: 14 LTFDDVAILPGLSTVEPHDVELSSRVSRSIFVSTPLVSSPMDTVTEWRMAAALARLGAVG 73 Query: 70 IIHRNLSPEEQAGQVAAVKRYLNWIIESPITVRKGQTVREAKALMQQYNISGLPVVDGEG 129 +IHRN+ EEQA V+ VK +R + ++++ + +G VV G+ Sbjct: 74 VIHRNMPREEQARHVSMVKSVSPSPWSEVPRIRLPDGLENYSLILEELD-AGAAVVFGDD 132 Query: 130 SLCGILTGRDLRFVKDERLKVEEVMTPDPVVERGRPTIDQAQEAFDRHKVEKLPLVDEGG 189 + G L V+ER AQ ++ + L L Sbjct: 133 GIKGYL-----------------------VLER-----PDAQLWLEKARYLSLYLT---- 160 Query: 190 KLIGLVTVKDIEKHQKHPRAALDGHGRLLVGAAVSPGDFRRRLPLLVENRVDVVVIDTAH 249 + P +DG GRL+VGAAVSP D R LL ++ D +VID AH Sbjct: 161 --------------RIRPFPTIDGEGRLVVGAAVSPFDLDRAR-LLEKSGADFLVIDVAH 205 Query: 250 GHTRNVIETVKAIKKEWDVPVIAGNVATVEGTKALIEAGADV--VKVGIGPGSICTTRIV 307 H RN + ++ + KE + V+AGN+ T EG + +V +++GI GSIC+T V Sbjct: 206 LHNRNALSSLSRLVKEVSIDVVAGNLGTREGVLDTLARAEEVAGLRMGISSGSICSTGEV 265 Query: 308 AGIGVPQFSAVLQCA---EEAAKHG-VPVIADGGIKYSGDIVKAIGAGAHAVMIGNLFAG 363 AG VP +AV+ EE G +P+IADGG++ +GD KAI AGA AVM G LFAG Sbjct: 266 AGAAVPTLTAVMNAVLALEELGLAGRIPIIADGGVRNAGDAAKAIIAGASAVMGGRLFAG 325 Query: 364 LKEAPGKEIIYEGRIFKTYRGMGSLGAI-REGSGDRYQIXXXXXXXXXXXXXXXXYKGEL 422 E+PG I +++K YRGM S GA+ R + DRY Y G + Sbjct: 326 ADESPGPRIRVGDKLYKPYRGMASRGAMERRFAVDRY--SRQAKAVEEGVEGLVPYTGPV 383 Query: 423 APYLHQLVSGLKKGMGYCGCRTLEELRSYRRFVKITHAALRESHVHDV 470 L++L GLK +GY G + + + ++T RE HD+ Sbjct: 384 VKTLYELAEGLKAALGYAGAQDVTSAWK-AKLARVTPTGSREIRPHDI 430 >gi|14600580|ref|NP_147097.1| hypothetical protein APE_0267 [Aeropyrum pernix K1] Length = 143 Score = 60.8 bits (146), Expect = 7e-11 Identities = 33/108 (30%), Positives = 62/108 (57%), Gaps = 5/108 (4%) Query: 98 PITVRKGQTVREAKALMQQYNISGLPVVDGEGSLCGILTGRD-LRFVKDERL----KVEE 152 P+T+ G+++ EA LM + + L VVD +G + GILT RD + + + KVE+ Sbjct: 23 PVTIEVGRSIAEAARLMAERGVGSLIVVDKQGLVKGILTERDIINSLASGKACAEGKVED 82 Query: 153 VMTPDPVVERGRPTIDQAQEAFDRHKVEKLPLVDEGGKLIGLVTVKDI 200 +M+ +P+V ++ E + +P++DE G+ +G+++V+DI Sbjct: 83 IMSRNPIVASPDDDLEIIIEKMRDMNIRHIPVIDEDGRPLGMISVRDI 130 >gi|118431896|ref|NP_148644.2| hypothetical protein APE_2489.1 [Aeropyrum pernix K1] Length = 148 Score = 60.1 bits (144), Expect = 1e-10 Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 5/112 (4%) Query: 94 IIESPITVRKGQTVREAKALMQQYNISGLPVVDGEGSLCGILTGRDLRFVKDE-----RL 148 +I +TV+ V A LM + I + VVD EG L GI+T RD+ +V E + Sbjct: 19 MITEVVTVKPDDPVTRAAKLMVENLIGSVLVVDDEGRLRGIVTERDIVYVVSEAWDPTKH 78 Query: 149 KVEEVMTPDPVVERGRPTIDQAQEAFDRHKVEKLPLVDEGGKLIGLVTVKDI 200 +V E+MT +P+V R + V LP+VDE G +G+++ +D+ Sbjct: 79 RVWEIMTENPIVVRPDDDLLTVVRKMSETNVRHLPVVDEKGAPVGIISFRDV 130 >gi|118431612|ref|NP_148203.2| hypothetical protein APE_1838.1 [Aeropyrum pernix K1] Length = 135 Score = 59.3 bits (142), Expect = 2e-10 Identities = 38/107 (35%), Positives = 52/107 (48%), Gaps = 4/107 (3%) Query: 98 PITVRKGQTVREAKALMQQYNISGLPVVDGEGSLCGILTGRDLRFVK----DERLKVEEV 153 P+T VRE +M S VVD + GI T RD+ V D VEE Sbjct: 14 PLTAAPQTPVREVVKMMYTQGKSAAVVVDQDNRPIGIFTERDVVRVVATGGDLDAPVEEY 73 Query: 154 MTPDPVVERGRPTIDQAQEAFDRHKVEKLPLVDEGGKLIGLVTVKDI 200 MT +PV R ++ +A H+V LP+VD+ GKL+G++T I Sbjct: 74 MTRNPVAVRDNESLTKALALMIEHRVRHLPVVDQEGKLVGIITASSI 120 Score = 42.0 bits (97), Expect = 3e-05 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%) Query: 85 AAVKRYLNWIIESPITVRKGQTVREAKALMQQYNISGLPVVDGEGSLCGILTGRDL 140 A V+ Y+ +P+ VR +++ +A ALM ++ + LPVVD EG L GI+T + Sbjct: 68 APVEEYMT---RNPVAVRDNESLTKALALMIEHRVRHLPVVDQEGKLVGIITASSI 120 >gi|14600549|ref|NP_147066.1| hypothetical protein APE_0231 [Aeropyrum pernix K1] Length = 287 Score = 55.8 bits (133), Expect = 2e-09 Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 33/203 (16%) Query: 99 ITVRKGQTVREAKALMQQYNISGLPVVDGEGSLCGILTGRDLRFVKDERLK----VEEVM 154 +T+ ++V+ A +LM ++NI G+PVV +G+L GI+T DL E++K V+E M Sbjct: 81 VTIEGTKSVKTAASLMLKHNIGGVPVVAPDGTLEGIITRTDLTRYYSEKMKGVNLVKEFM 140 Query: 155 TPDPVVERGRPTIDQAQEAFDRHKVEKLPLVDEGGKLIGLVTVKDIEKHQKHPRAALDGH 214 R +I + + K+ ++D GGKL+G++T +DI + H Sbjct: 141 REIYAKARREHSIFYVLKLMEIDATGKVLILD-GGKLVGVITKRDI----AFLATPVSVH 195 Query: 215 GRLLVGAAVSPGDFRRRLPLLVENRVDVVVIDTAHGHTRNVIETVKAIKKEWDVPVIAGN 274 G +P + + PL+ ++R+ G TR + + V+ N Sbjct: 196 G--------APKYVKIKKPLVYKDRI---------GSTRVYLVPLAE-------DVMTPN 231 Query: 275 VATVEGTKALIEAGADVVKVGIG 297 TVE + L +A +VK G+G Sbjct: 232 PITVEPEEDLAKAADIMVKEGVG 254 Score = 50.1 bits (118), Expect = 1e-07 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 9/123 (7%) Query: 89 RYLNWIIESPITVRKGQTVREAKALMQQYNISGLPVVDGEGSLCGILTGRDLRFVKDER- 147 R ++++ TV T+ A+ LM ++IS LPVV+G L GI+T D+ + Sbjct: 4 RVVSYMTRDVYTVSPDDTLAHARKLMLTHDISRLPVVEGS-KLRGIITITDIADALVRKY 62 Query: 148 -------LKVEEVMTPDPVVERGRPTIDQAQEAFDRHKVEKLPLVDEGGKLIGLVTVKDI 200 + V EVM D V G ++ A +H + +P+V G L G++T D+ Sbjct: 63 PSRPANSIYVREVMARDVVTIEGTKSVKTAASLMLKHNIGGVPVVAPDGTLEGIITRTDL 122 Query: 201 EKH 203 ++ Sbjct: 123 TRY 125 >gi|118431018|ref|NP_147193.2| hypothetical protein APE_0383.1 [Aeropyrum pernix K1] Length = 158 Score = 52.0 bits (123), Expect = 3e-08 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 7/112 (6%) Query: 98 PITVRKGQTVREAKALMQQYNISGLPVVDGEGSLCGILTGRDL------RFVKDERLKVE 151 PIT +V+EA +M + + L VV+ +L GILT D+ + + E ++V Sbjct: 20 PITTLPMTSVKEAAKIMLENRVGSLIVVNERNTLLGILTKTDIIREVVAKGLDPESVRVG 79 Query: 152 EVMTPDPVVERGRPTIDQAQEAFDRHKVEKLPLVD-EGGKLIGLVTVKDIEK 202 ++MT +P ++++A H + LP++D E K +G+VT DI K Sbjct: 80 DIMTRNPYYVYTDDSVERAASLMGEHNIGHLPVLDPETEKPVGIVTKTDIVK 131 >gi|118431283|ref|NP_147639.2| hypothetical protein APE_0974.1 [Aeropyrum pernix K1] Length = 299 Score = 49.7 bits (117), Expect = 2e-07 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 4/108 (3%) Query: 99 ITVRKGQTVREAKALMQQYNISGLPVVDGEGSLCGILTGRDLRFV----KDERLKVEEVM 154 +TVR TVRE + + I G P+VD + ++ G +T D+ + +D V++ M Sbjct: 186 LTVRHDMTVREVAKFLYSHGIRGAPIVDDKNNIIGFITTTDISMLIARGEDLDATVDKYM 245 Query: 155 TPDPVVERGRPTIDQAQEAFDRHKVEKLPLVDEGGKLIGLVTVKDIEK 202 +I +A D + V +L ++D G+ +G++T DI K Sbjct: 246 RKTVFTINEDESIYEAMRYMDFNGVGRLVVIDYAGRPLGIITRTDILK 293 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 528,350 Number of Sequences: 1700 Number of extensions: 25697 Number of successful extensions: 135 Number of sequences better than 1.0e-04: 7 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 106 Number of HSP's gapped (non-prelim): 18 length of query: 481 length of database: 492,079 effective HSP length: 80 effective length of query: 401 effective length of database: 356,079 effective search space: 142787679 effective search space used: 142787679 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718689|ref|YP_003874221.1| adenylosuccinate synthetase [Spirochaeta thermophila DSM 6192] (408 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 438,315 Number of Sequences: 1700 Number of extensions: 20362 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 408 length of database: 492,079 effective HSP length: 79 effective length of query: 329 effective length of database: 357,779 effective search space: 117709291 effective search space used: 117709291 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718690|ref|YP_003874222.1| GMP synthase [Spirochaeta thermophila DSM 6192] (517 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602074|ref|NP_148620.1| GMP synthase [Aeropyrum pernix K1] 380 e-107 gi|14602143|ref|NP_148691.1| anthranilate synthase component II ... 72 2e-14 >gi|14602074|ref|NP_148620.1| GMP synthase [Aeropyrum pernix K1] Length = 512 Score = 380 bits (977), Expect = e-107 Identities = 229/517 (44%), Positives = 316/517 (61%), Gaps = 17/517 (3%) Query: 4 ILVLDFGGQTCQLIARRIREIGVYSEVVPG---DTPVESLPLEGVKGIILSGSPYSVYDA 60 +LV+DFGGQ LIARRIRE+GVYSE+VP D E+LP G++LSG P SV+ + Sbjct: 10 VLVVDFGGQYAHLIARRIRELGVYSEIVPATSLDALGEALPRAA--GVVLSGGPGSVWGS 67 Query: 61 EAPKVDPRVSSLGIPILGICYGVQQLAHLFGGKVAPLDHREYGRSRLFFTEASPLFEGVP 120 + V LG P+LGICYG Q LA + GG+V E+G + + + L G+P Sbjct: 68 RHDEAAAMVLQLGKPVLGICYGHQLLAKVLGGEVGRSPLPEFGPTEVEVLDYGILLNGLP 127 Query: 121 EGFVSWMSHGDTIVEVPEGFRVIARSEHNLVAGITHERLPLYGIQFHPEVTHCEYGLTVL 180 F WMSH D ++ P +V+AR+ + VA + ++G+Q+HPEV H +YG VL Sbjct: 128 SRFKVWMSHYDAVLRPPGEAKVLARTPGSPVAAMELWGR-VFGVQWHPEVRHTQYGREVL 186 Query: 181 ENFAVRICGARKTWTMASYLEDVQGLLRTQVGDDPLLLLISGGVDSTVVAALLLKTFPPE 240 +N+ + + GA +TW + ++ ++ +VGD + +SGGVDSTV AAL+ K Sbjct: 187 DNW-LSLVGAPRTWRPGDMVSELVESVKKEVGDALAVAAVSGGVDSTV-AALIAKKAIGS 244 Query: 241 QVHLLYIDTGLMRKNETEEVEANLRTLGASNLYIVHAEERFLSALKGVVDPEKKRQIIGD 300 +++ ++ID GL + E E V L LG + +V A E FL+AL+GV DPE+KR+++G Sbjct: 245 RLYPVFIDHGLHPEGEVERVVKLLSRLGLEPV-MVDAGEEFLAALEGVGDPEEKRRVVGR 303 Query: 301 VFIQVQEEELRRRRIPDQAFLAQGTLYTDLIESGKGVGNKAKVIKSHHNVRSPLIERKRK 360 V+ +V E R R +L QGT+Y D+IESG G A IK+HHNV + + K Sbjct: 304 VYAEVLE---RAARDIGAEYLVQGTIYPDVIESGARPG--ADTIKTHHNVGGLPKDMRLK 358 Query: 361 EGRVIEPLSMLYKDEVRRLGAHLGVPREVLERHPFPGPGLAVRILGEVTREKCDILREAD 420 ++EPL YKDEVR L LGVPRE++ + P PGPGLAVR+ G +TREK I+R AD Sbjct: 359 ---LVEPLRYFYKDEVRLLAEKLGVPRELIWKQPVPGPGLAVRVEGPITREKLRIVRRAD 415 Query: 421 AIFIDELKRRHLYQEIWQAFCVLLPVRTVGVTGDDRNYGYVVALRAVTSKDGMTADAYPF 480 AI +E++ L ++WQ F VL GV GD R+YGYVVA+RAV S D MTA Sbjct: 416 AIVREEVEAAGLGGKLWQYFAVLTASMATGVRGDSRSYGYVVAVRAVESVDAMTAKPAEL 475 Query: 481 PTADLLEIAALITNRVKDVGRVVYDVSSKPPATIEWE 517 P L IA IT+ + +V RVVYD++SKPP+TIEWE Sbjct: 476 PWWLLERIARRITSEIPEVVRVVYDITSKPPSTIEWE 512 >gi|14602143|ref|NP_148691.1| anthranilate synthase component II [Aeropyrum pernix K1] Length = 196 Score = 72.4 bits (176), Expect = 2e-14 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 5/186 (2%) Query: 3 KILVLDFGGQTCQLIARRIREIGVYSEVVPGD--TPVESLPLEGVKGIILSG--SPYSVY 58 K+LV+D I + +G S V+ D +P + L+ + +I G +P + Sbjct: 5 KVLVIDNYDSFVYNIVDVLARLGAESIVLRNDEVSPKIARRLKPDRIVISPGPGNPLNPR 64 Query: 59 DAEAPKVDPRVSSLGIPILGICYGVQQLAHLFGGKVAPLDHREYGRSRLFFTEASPLFEG 118 D+ R + P+LGIC G Q + L+G KV +G++ L+ G Sbjct: 65 DSGRAPDIVREMARNTPVLGICLGHQIIGLLYGAKVERAPKPMHGKTSPVEHYGHKLYRG 124 Query: 119 VPEGFVSWMSHGDTIVEVPEGFRVIARS-EHNLVAGITHERLPLYGIQFHPEVTHCEYGL 177 VP F + H + + PE +V + S + ++ GI+H LP+YG+QFHPE +G Sbjct: 125 VPRVFQAMRYHSLAVYDPPEELQVDSVSLDDKVIMGISHAELPVYGVQFHPESIGTPHGE 184 Query: 178 TVLENF 183 ++ NF Sbjct: 185 VIVRNF 190 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 578,245 Number of Sequences: 1700 Number of extensions: 28358 Number of successful extensions: 115 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105 Number of HSP's gapped (non-prelim): 2 length of query: 517 length of database: 492,079 effective HSP length: 81 effective length of query: 436 effective length of database: 354,379 effective search space: 154509244 effective search space used: 154509244 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718691|ref|YP_003874223.1| hypothetical protein STHERM_c10040 [Spirochaeta thermophila DSM 6192] (134 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,687 Number of Sequences: 1700 Number of extensions: 3228 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 134 length of database: 492,079 effective HSP length: 68 effective length of query: 66 effective length of database: 376,479 effective search space: 24847614 effective search space used: 24847614 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718692|ref|YP_003874224.1| hypothetical protein STHERM_c10050 [Spirochaeta thermophila DSM 6192] (111 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.138 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 113,298 Number of Sequences: 1700 Number of extensions: 4456 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 111 length of database: 492,079 effective HSP length: 65 effective length of query: 46 effective length of database: 381,579 effective search space: 17552634 effective search space used: 17552634 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718693|ref|YP_003874225.1| hypothetical protein STHERM_c10060 [Spirochaeta thermophila DSM 6192] (193 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 191,393 Number of Sequences: 1700 Number of extensions: 7775 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 193 length of database: 492,079 effective HSP length: 72 effective length of query: 121 effective length of database: 369,679 effective search space: 44731159 effective search space used: 44731159 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718694|ref|YP_003874226.1| hypothetical protein STHERM_c10070 [Spirochaeta thermophila DSM 6192] (466 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 419,925 Number of Sequences: 1700 Number of extensions: 18580 Number of successful extensions: 91 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91 Number of HSP's gapped (non-prelim): 0 length of query: 466 length of database: 492,079 effective HSP length: 80 effective length of query: 386 effective length of database: 356,079 effective search space: 137446494 effective search space used: 137446494 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718695|ref|YP_003874227.1| RND family efflux transporter MFP subunit [Spirochaeta thermophila DSM 6192] (356 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 272,836 Number of Sequences: 1700 Number of extensions: 10963 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 356 length of database: 492,079 effective HSP length: 78 effective length of query: 278 effective length of database: 359,479 effective search space: 99935162 effective search space used: 99935162 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718696|ref|YP_003874228.1| transporter [Spirochaeta thermophila DSM 6192] (226 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 191 1e-50 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 150 2e-38 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 138 1e-34 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 137 2e-34 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 135 9e-34 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 134 1e-33 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 130 3e-32 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 129 8e-32 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 126 5e-31 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 116 4e-28 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 115 9e-28 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 115 1e-27 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 112 8e-27 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 108 1e-25 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 107 3e-25 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 105 7e-25 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 103 4e-24 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 100 4e-23 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 99 1e-22 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 97 3e-22 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 97 4e-22 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 97 4e-22 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 96 8e-22 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 95 2e-21 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 94 2e-21 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 89 1e-19 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 87 3e-19 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 87 5e-19 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 79 1e-16 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 78 2e-16 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 77 4e-16 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 77 5e-16 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 76 8e-16 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 75 1e-15 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 74 2e-15 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 70 4e-14 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 65 1e-12 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 63 7e-12 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 60 5e-11 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 55 1e-09 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 53 6e-09 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 191 bits (486), Expect = 1e-50 Identities = 107/216 (49%), Positives = 139/216 (64%), Gaps = 4/216 (1%) Query: 6 VRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGK 65 V VEGVVK Y + ALR VS+ V +GE +AIMGPSGSGK+TL+++I +D P G+ Sbjct: 11 VVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGR 70 Query: 66 VFIEEEDVSRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPSKERRRR 125 V ++ +VS EL R R ++G+VFQQ NL+P LT +EN+ P+ AG K R R Sbjct: 71 VIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIPTLTALENILLPMALAG---KANRLR 127 Query: 126 AIGALERVGLSHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKIL 185 L RVGL + P ELSGGE+QR+A+A AL +P II+ADEPTG LD TG +I+ Sbjct: 128 GQELLRRVGLGGKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIV 187 Query: 186 D-LFREIHEEGRTLVIVTHDPEVAQEAQRVIRIRDG 220 L E H G+T+V+ THDP VA+ A RV I DG Sbjct: 188 RILLEEAHSRGKTVVLTTHDPRVARMADRVAVIEDG 223 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 150 bits (380), Expect = 2e-38 Identities = 88/223 (39%), Positives = 134/223 (60%), Gaps = 7/223 (3%) Query: 5 VVRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGG 64 ++ V G+V Y GE V L+GV + + GE + IMGPSGSGKSTL+ I L P G Sbjct: 4 LLEVRGLVVSYS-GEKV---LKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSG 59 Query: 65 KVFIEEEDVSRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYA-GVPSKERR 123 + DV+RLS +L +R RKIG++ Q ++L P +TV+ N+ PL A G+ ++ Sbjct: 60 SIVFRGVDVTRLSGSQLRMVR-RKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAE 118 Query: 124 RRAIGALERVGLSHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRK 183 RA+ L +G+ P LSGG++QR A+ARAL EP I+L DEPT ALD ++ Sbjct: 119 ERAVKYLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRAD 178 Query: 184 ILDLFREIHEEGRTLVIVTHDPEVA-QEAQRVIRIRDGLIEEE 225 +L+ + G+ +++VTH+ + A + A R+ + DG+++EE Sbjct: 179 VLEALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEE 221 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 138 bits (347), Expect = 1e-34 Identities = 83/221 (37%), Positives = 128/221 (57%), Gaps = 12/221 (5%) Query: 6 VRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGK 65 V++EGV K + G V A+R V++ +E E+V+I+GPSGSGK+TL++LI + P+ G+ Sbjct: 4 VKLEGVWKVF----GNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGR 59 Query: 66 VFIEEEDVSRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPSKERRRR 125 ++ + DV+ L + R IG VFQ + L P +TV EN+ PL + + Sbjct: 60 IYFNDVDVTDLPPNK------RNIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEK 113 Query: 126 AIGALERVGLSHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKIL 185 + + +G+ L P +LSGG++QRVA+ARALV EP ++L DEP LD KI Sbjct: 114 VLSVAKLLGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIR 173 Query: 186 DLFREIHEE-GRTLVIVTHD-PEVAQEAQRVIRIRDGLIEE 224 +++ +E G T + VTHD E A R+ I G+I++ Sbjct: 174 SELKKLQKELGITAIYVTHDQSEALAMADRIAIIASGVIQQ 214 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 137 bits (346), Expect = 2e-34 Identities = 93/216 (43%), Positives = 127/216 (58%), Gaps = 10/216 (4%) Query: 5 VVRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVP--- 61 V+ ++ + Y G+V A+ GVS+ V KGE+++I+G SGSGKSTL I L +P Sbjct: 3 VLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGR 62 Query: 62 -TGGKVFIEEEDVSRLSERELARIRNRKIGFVFQQFN--LLPRLTVVENVETPLIYAGVP 118 GG++ D+ L+ EL R R R+IG VFQ L P TV + L+ G+ Sbjct: 63 IVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLA 122 Query: 119 SK--ERRRRAIGALERVGLSH-RLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGA 175 S E A ALE VG+ R S P +LSGG+RQRVAIA A+ EP I++ADEPT A Sbjct: 123 SSGSEAESMAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTA 182 Query: 176 LDTKTGRKILDLFREIHEE-GRTLVIVTHDPEVAQE 210 LD KI+DL +++ EE G T+++VTHD +A E Sbjct: 183 LDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAE 218 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 135 bits (340), Expect = 9e-34 Identities = 78/221 (35%), Positives = 125/221 (56%), Gaps = 12/221 (5%) Query: 6 VRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGK 65 VR+EG+VK + G AL+G+ + ++ GE V ++GPSG GK+T + ++ L+ P G+ Sbjct: 4 VRLEGIVKRF----GKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGR 59 Query: 66 VFIEEEDVSRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPSKERRRR 125 V+ + DV+ L ++ R + VFQ + L P + V +N+ PL +P E RR Sbjct: 60 VYFDGRDVTGLPPKD------RNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRR 113 Query: 126 AIGALERVGLSHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKIL 185 A E + + H L P +LSGG++QRVA+ARA+VTEP ++L DEP LD K+ Sbjct: 114 VRWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMR 173 Query: 186 DLFREIHEE-GRTLVIVTHDP-EVAQEAQRVIRIRDGLIEE 224 +++ G T++ VTHD E R++ + G I++ Sbjct: 174 SEIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQ 214 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 134 bits (338), Expect = 1e-33 Identities = 93/230 (40%), Positives = 135/230 (58%), Gaps = 10/230 (4%) Query: 1 MAPFVVRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLM-HLIGCLD 59 MA ++ VE + + G+V A+ GVS + +GE + I G SGSGKSTL ++G + Sbjct: 1 MAQELLVVEDLKTYFYTLRGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVP 60 Query: 60 VP---TGGKVFIEEEDVSRLSERELAR-IRNRKIGFVFQ-QFNLL-PRLTVVENVETPL- 112 P GG++ I+ DV+ +SE EL R +R +K+ VFQ N+L P TV +E L Sbjct: 61 PPGRIVGGRIMIDGMDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQ 120 Query: 113 IYAGVPSKERRRRAIGALERVGLSHRLSHR-PTELSGGERQRVAIARALVTEPLIILADE 171 I+ GV E R+R LE VGL ++ R P ELSGG++QRV IA AL EP I++ADE Sbjct: 121 IHRGVGRHEARQRVYELLESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADE 180 Query: 172 PTGALDTKTGRKILDLFREI-HEEGRTLVIVTHDPEVAQEAQRVIRIRDG 220 PT ALD +IL+L +++ E+ +++++THD V E + I G Sbjct: 181 PTTALDVVVQAQILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIMYG 230 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 130 bits (327), Expect = 3e-32 Identities = 89/222 (40%), Positives = 122/222 (54%), Gaps = 15/222 (6%) Query: 6 VRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGK 65 VR++ V Y G V ALRGVS + A++GPSG GK+T++ +I L P G+ Sbjct: 6 VRLDNVHASY----GEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGR 61 Query: 66 VFIEEEDVSRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPSKERRRR 125 VF D + L R +GFVFQ L P +TV +NV L G E RR+ Sbjct: 62 VFFGGVDYTGLPPER------RSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQ 115 Query: 126 AIGALERVGLS---HRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGR 182 ALE VGL+ + R T LSGG++QRVA+ARA+ EP ++L DEP LD K + Sbjct: 116 VEWALETVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQ 175 Query: 183 KIL-DLFREIHEEGRTLVIVTHDPEVAQE-AQRVIRIRDGLI 222 ++L +L R + G T++ VTHD A E A ++ +RDG I Sbjct: 176 RLLAELKRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRI 217 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 129 bits (323), Expect = 8e-32 Identities = 89/216 (41%), Positives = 125/216 (57%), Gaps = 13/216 (6%) Query: 19 EGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGKVFIEEEDVSRLSE 78 + VV A+ GV +G+ +GE +AI+G SG GK+TL I ++ P+ G ++ E L+ Sbjct: 32 DAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGE---LLTP 88 Query: 79 RELARIRN--RKIGFVFQQ--FNLLPRLTVVENVETPLIYAGVP-SKERRRRAIGALERV 133 LAR R RK+ VFQ +L P + V + V PL+ G+ +E RRRA+ LE V Sbjct: 89 HRLARDRRLRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETV 148 Query: 134 GLSHRLS---HRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKILDLFRE 190 GL+ +P +LSGG+RQRVAIAR LV EP +I+ADEP +D ILDL + Sbjct: 149 GLTPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMD 208 Query: 191 IHEE-GRTLVIVTHDPEVAQE-AQRVIRIRDGLIEE 224 H G T+V++THD VA+ A R+ + G I E Sbjct: 209 YHRRTGATIVLITHDIAVARAVADRIAVMYLGKIVE 244 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 126 bits (316), Expect = 5e-31 Identities = 80/221 (36%), Positives = 117/221 (52%), Gaps = 12/221 (5%) Query: 6 VRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGK 65 +R+E V K + G AL VS+ + GE ++GPSG GK+T + +I + P G+ Sbjct: 4 IRLESVTKRF----GNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGR 59 Query: 66 VFIEEEDVSRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPSKERRRR 125 V+I DV+ L E R VFQ + L P + V +N+ L +P E RR Sbjct: 60 VYIGSRDVTMLKPYE------RNTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRR 113 Query: 126 AIGALERVGLSHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKIL 185 A E + + H L P +LSGG++QRVA+ARA+VTEP ++L DEP LD K+ Sbjct: 114 VRWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMR 173 Query: 186 DLFREIHEE-GRTLVIVTHDPEVAQE-AQRVIRIRDGLIEE 224 + + + G T+V VTHD E A + RV + G +E+ Sbjct: 174 EEIVRLQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQ 214 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 116 bits (291), Expect = 4e-28 Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 16/223 (7%) Query: 6 VRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGK 65 +R+EGVVK + G V A+ V + ++ GE+ ++GPSG GK+T + LI L+ P G+ Sbjct: 4 IRLEGVVKRF----GKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGR 59 Query: 66 VFIEEEDVSRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYA----GVPSKE 121 + I+ EDV+ ++ R + VFQ + L P ++V +N+ L G+ + Sbjct: 60 ILIDGEDVTFKDPKD------RNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDD 113 Query: 122 RRRRAIGALERVGLSHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTG 181 RRR I + + + L +P +LSGG++QRVA+ARALV P + L DEP LD Sbjct: 114 IRRRVIEVAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLR 173 Query: 182 RKILDLFREIHEEGR-TLVIVTHD-PEVAQEAQRVIRIRDGLI 222 + +++ ++ + T V VTHD E A R+ + G + Sbjct: 174 LAMRAELKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRV 216 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 115 bits (288), Expect = 9e-28 Identities = 83/229 (36%), Positives = 122/229 (53%), Gaps = 12/229 (5%) Query: 4 FVVRVEGVVKEYRMG-----EGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCL 58 + V E +VKEYRMG + AL GV + V +G +++GP+G+GK+TL+ ++ L Sbjct: 3 YAVEAEALVKEYRMGLLPWRARTIRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTL 62 Query: 59 DVPTGGKVFIEEEDVSRLSERELARIRNRKIGFVFQ-QFNLLPRLTVVENVETPLIYAGV 117 +P G + DV R E +R+R IG V + L RL+ +N+ G+ Sbjct: 63 LLPDSGWARVAGFDVVR----EANNVRSR-IGVVLGGERALYWRLSGWDNLWFFSQLYGI 117 Query: 118 PSKERRRRAIGALERVGLSHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALD 177 P +E +RR LE VGL R S G +QR+ IAR L+ +P ++L DEPT LD Sbjct: 118 PPREAKRRVKELLEIVGLEEWAHVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLD 177 Query: 178 TKTGRKILDLFREIHEEGRTLVIVTHDPEVAQE-AQRVIRIRDGLIEEE 225 K R++ + R I EGRT+++ TH A+E + RV I G I E Sbjct: 178 PKAAREVRSIIRRIVREGRTVLLTTHYMVEAEELSDRVAIISKGRIVAE 226 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 115 bits (287), Expect = 1e-27 Identities = 70/196 (35%), Positives = 110/196 (56%), Gaps = 3/196 (1%) Query: 12 VKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGKVFIEEE 71 VK V A+ V+IG+ +G+ + ++G SGSGK+T +I L+ PTGG++F + Sbjct: 39 VKSLFFTRAYVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGI 98 Query: 72 DVSRLSERELARIRNR-KIGFVFQQFNLLPRLTVVENVETPLIYAGVPSKERRRRAIGAL 130 DV +L R L R R +I F +L PR T+ + P+ G+ + + + L Sbjct: 99 DVMKLRGRGLKEFRRRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLL 158 Query: 131 ERVGLSHRLSHR-PTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKILDLFR 189 +VGL+ +R P E SGG+RQR+AIAR L +P I+ DEPT ALD +IL+L + Sbjct: 159 YQVGLNETHLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLK 218 Query: 190 EIHEE-GRTLVIVTHD 204 ++ + T + ++HD Sbjct: 219 DLQRKYSLTYLFISHD 234 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 112 bits (280), Expect = 8e-27 Identities = 86/230 (37%), Positives = 117/230 (50%), Gaps = 40/230 (17%) Query: 20 GVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGKVFIE------EEDV 73 G V A+ GVS+ ++KGE + ++G SGSGK+TL I L P G VFI+ EE V Sbjct: 25 GYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELEEAV 84 Query: 74 S---------RLSERELARIRN-------------------RKIGFVFQQ--FNLLPRLT 103 S + ++ R R RK+ V Q +L PR+ Sbjct: 85 SIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMK 144 Query: 104 VVENVETPLIYAGVPSKER--RRRAIGALERVGLSHRLSHR-PTELSGGERQRVAIARAL 160 V E + P+ G+ +RR I LE VGL + R P ELSGG+RQRVAIARAL Sbjct: 145 VGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIARAL 204 Query: 161 VTEPLIILADEPTGALDTKTGRKILDLFREIHEE-GRTLVIVTHDPEVAQ 209 P I++ DEPT ALD +IL L RE+ ++ G T +++THD V + Sbjct: 205 ALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVR 254 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 108 bits (270), Expect = 1e-25 Identities = 84/239 (35%), Positives = 126/239 (52%), Gaps = 18/239 (7%) Query: 5 VVRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTG- 63 ++ VE + + G+V A+ VS + +GE ++G +G GKS + L P G Sbjct: 9 IIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGR 68 Query: 64 ---GKVFIEEE-----DVSRLSERELARIRNRKIGFVFQQFN--LLPRLTVVENV-ETPL 112 GK++ E D+ L E+EL RIR +I ++FQ + L P T+ V ET L Sbjct: 69 IVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETML 128 Query: 113 IYAGVPS-KERRRRAIGALERVGL---SHRLSHRPTELSGGERQRVAIARALVTEPLIIL 168 + V S +E RRA+G L+ V + R+ P ELSGG +QR I +L P +++ Sbjct: 129 AHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLI 188 Query: 169 ADEPTGALDTKTGRKILDLFREI-HEEGRTLVIVTHD-PEVAQEAQRVIRIRDGLIEEE 225 ADEPT ALD +I+DL ++ E G TL+++TH+ VA+ RV + G I EE Sbjct: 189 ADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEE 247 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 107 bits (266), Expect = 3e-25 Identities = 75/222 (33%), Positives = 112/222 (50%), Gaps = 7/222 (3%) Query: 2 APFVVRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVP 61 A V + G+VK Y G V AL V + GE A++G +G+GK+TLM ++ P Sbjct: 9 AGHAVAMRGIVKVYPDG---VKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKP 65 Query: 62 TGGKVFIEEEDVSRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPSKE 121 T G++++ VS + R I V+QQF L+ +TV EN+ L G+ E Sbjct: 66 TMGEIYVWGRKVSWRGPWDAIR---NGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSE 122 Query: 122 RRRRAIGALERVGLSHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTG 181 RRR + ER+GL L+ +L G RQRV I +AL +++ DEPT L Sbjct: 123 ARRRTLETAERLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEA 182 Query: 182 RKILDLFREIHEEGRTLVIVTHD-PEVAQEAQRVIRIRDGLI 222 K+ R + + G ++V +TH EV + A RV +R G + Sbjct: 183 EKLFSTLRLLKDMGVSVVYITHKLGEVVRVADRVTVLRRGRV 224 Score = 51.6 bits (122), Expect = 2e-08 Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 21/213 (9%) Query: 22 VSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGKVFIEEE------DVSR 75 V +R VS+ V +GE V I G +G+G+ L+ I L P G + ++ D R Sbjct: 275 VERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEVQGRRIEGSLDFYR 334 Query: 76 LSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPSKERRRRAIGALERVGL 135 +A R + + + +V EN+ A RR R R+ Sbjct: 335 AGGGYIAGDRGKVLAMDY---------SVAENIAFLYYTASKTLLLRRSRLEDLFRRLVE 385 Query: 136 SHRLSHRPT-----ELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKILDLFRE 190 RL R LSGG +Q+V + ++ +++A PT LD T + +L E Sbjct: 386 RFRLVARSPWTPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTSFVRNLLSE 445 Query: 191 IHEEGRTLVIVTHD-PEVAQEAQRVIRIRDGLI 222 + +G +++V+ D E+ + + R+ + G + Sbjct: 446 LARQGAGILLVSTDLDEILELSDRIYVMSGGRV 478 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 105 bits (263), Expect = 7e-25 Identities = 83/241 (34%), Positives = 131/241 (54%), Gaps = 21/241 (8%) Query: 1 MAPFVVRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDV 60 M+ V+ + + Y +GVV+AL GV + V +GE +AI+G SG GKSTL I + + Sbjct: 1 MSEIVLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARI-L 59 Query: 61 PTG-----GKVFIE-----EEDVSRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVET 110 P+ G + + D+ RLSE EL +IR + + +FQ + L+ V V+ Sbjct: 60 PSNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAA--LSPVHKVKK 117 Query: 111 PLIYAGVPSKERRRRAIGA--LERVGLS--HRLSHR-PTELSGGERQRVAIARALVTEPL 165 + V ++RR I L+++ + H + + P ELSGG +QR+ IA +L+T P Sbjct: 118 Q-VTDHVSGEKRRVEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPR 176 Query: 166 IILADEPTGALDTKTGRKILDLFREIHEE-GRTLVIVTHDPEVAQE-AQRVIRIRDGLIE 223 II+ADEPT ALD +IL + + EE T++++TH+ VA E A R+ + G + Sbjct: 177 IIIADEPTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVV 236 Query: 224 E 224 E Sbjct: 237 E 237 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 103 bits (257), Expect = 4e-24 Identities = 76/213 (35%), Positives = 118/213 (55%), Gaps = 17/213 (7%) Query: 25 LRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCL-DVPTG----GKVFIEEEDVSRLSER 79 L+G+S + G AIMGPSGSGKSTL+ +I L D+ G G+V+I +V + Sbjct: 21 LKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVMKEDPY 80 Query: 80 ELARIRNRKIGFVFQQFNLLPRLTVVENVET-PLIYAGVPSKERRRRAIG-ALERVGL-- 135 + R G VFQ+ N P +T+ ENV P ++ +K+ + AL+ L Sbjct: 81 NIRRYT----GMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEIVEWALKMAHLWD 136 Query: 136 --SHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKI-LDLFREIH 192 RLS P +LSGG+RQR+++ARAL +P ++L DEPT +D + KI + Sbjct: 137 EVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAK 196 Query: 193 EEGRTLVIVTHDP-EVAQEAQRVIRIRDGLIEE 224 EE T++IVTH P + A+ + +++ + +G + E Sbjct: 197 EEMATVIIVTHTPQQAARISDQILFLYEGRVIE 229 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 100 bits (248), Expect = 4e-23 Identities = 76/231 (32%), Positives = 111/231 (48%), Gaps = 22/231 (9%) Query: 1 MAPFVVRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDV 60 M P VR+EGV Y V LRGVS ++ G VA++GP+GSGK+TL+ L+ + Sbjct: 1 MRPCSVRLEGVEARYNTSPPV---LRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIK 57 Query: 61 PTGGKVFIEEEDVSRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIY-----A 115 P+ G+V + R+ R +G+ + PRL + VE L+Y Sbjct: 58 PSRGRVEVCGSPPGRV---------RRMLGYAPASPEVDPRL---KAVEVALLYRYGVSE 105 Query: 116 GVPSKERR-RRAIGALERVGLSHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTG 174 GV R + AL +G+ R ELS G+R+ V +A L P + L DEP Sbjct: 106 GVAWGRRDWEEVLAALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHS 165 Query: 175 ALDTKTGRKILDLFREIHEEGRTLVIVTHDPEVAQEAQRVIRIRDGLIEEE 225 LD R++ + R + T+V THDP A A VI +R+GL+ + Sbjct: 166 FLDVSNMRRVTLVLRSLRGRA-TIVYTTHDPLAAMAADSVIMLREGLLHAQ 215 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 98.6 bits (244), Expect = 1e-22 Identities = 66/213 (30%), Positives = 110/213 (51%), Gaps = 14/213 (6%) Query: 1 MAPFVVRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDV 60 M +++++E V Y G + L VS+ + +G I+GP+G+GKSTL+ + Sbjct: 1 MGDWIIKLEDVSAGY----GKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTT 56 Query: 61 PTGGKVFIEEEDVSRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPS- 119 G+V E DV+ + + A+I + F+FQ N+ LTV EN+ L +P Sbjct: 57 VYKGRVLFENTDVTHMPPHDRAKIG---MTFIFQLENIFRELTVYENLR--LAGYDLPED 111 Query: 120 --KERRRRAIGALERVGLSHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALD 177 ++R R L RL + LSGGERQ +A+A ++ +P + L DEPT L Sbjct: 112 VFRDRLEEVFSMFPR--LKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLS 169 Query: 178 TKTGRKILDLFREIHEEGRTLVIVTHDPEVAQE 210 K +++L R +++EG T+V+V + + + E Sbjct: 170 PKLAKEVLSYVRILNKEGYTVVLVEQNVKASLE 202 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 97.4 bits (241), Expect = 3e-22 Identities = 72/215 (33%), Positives = 109/215 (50%), Gaps = 28/215 (13%) Query: 22 VSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGKVFIEEE---------- 71 V A+ GVS + +GE ++G SG GK+T I L TGG+VF + + Sbjct: 47 VKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERR 106 Query: 72 ----------DVSRLSERELARIRNRKIGFVFQQ--FNLLPRLTVVENVETPLIYAGVPS 119 D+ + R+ +R R++ V+Q +L PR T+ +E PL+ + + Sbjct: 107 GVKSLGDGFVDLLAVPRRKFKPLR-RELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGN 165 Query: 120 -KERRRRAIGALERVGL---SHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGA 175 +ER LE V L S + P +LSGG+RQRVAIARA + P +++ADEP Sbjct: 166 AREREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSM 225 Query: 176 LDTKTGRKILDLFREIHEE-GRTLVIVTHDPEVAQ 209 LD +IL+L E+ G +L+ +THD VA+ Sbjct: 226 LDVSIRAEILELLLGFREKLGTSLLFITHDLAVAR 260 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 96.7 bits (239), Expect = 4e-22 Identities = 68/209 (32%), Positives = 111/209 (53%), Gaps = 9/209 (4%) Query: 1 MAPFVVRVEGVVKEY---RMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGC 57 MA ++ G+VK + R+ VV AL+GVS V +GE + +GP+G+GK+T + ++ Sbjct: 1 MAGAMIEARGLVKRFVSGRIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILST 60 Query: 58 LDVPTGGKVFIEEEDVSRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGV 117 L P GG+ + DV + E +R R + + +LT EN+ G+ Sbjct: 61 LLDPDGGEARVAGFDVVK----ERWEVRKRIGVMLSVERGFYWKLTGRENLYYFGRIYGI 116 Query: 118 PSKERRRRAIGALERVGLSHRL-SHRP-TELSGGERQRVAIARALVTEPLIILADEPTGA 175 P E + R L+ VGL+ + +P E+S G + R+ +AR L+ +P +++ DEPT Sbjct: 117 PQGELKSRIKEVLDLVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLG 176 Query: 176 LDTKTGRKILDLFREIHEEGRTLVIVTHD 204 LD + R I + R + EGRT+ I TH+ Sbjct: 177 LDPASARTIRGVIRSLASEGRTIFITTHN 205 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 96.7 bits (239), Expect = 4e-22 Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 10/216 (4%) Query: 6 VRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGK 65 V G+ K + G +A+ GVS V GE IMGP+GSGK+TL+ ++ + P+GG Sbjct: 5 VEARGLRKRF----GGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGS 60 Query: 66 VFIEEEDVSRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPSKERRRR 125 V + DV RE + IGF Q + R+T E + G+ RR Sbjct: 61 VRVCGYDVWGDGWREARGL----IGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARRE 116 Query: 126 AIGALERVGLSHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKIL 185 A LE +G L LSGG+R+ + IA AL + P +++ DEP LD + + Sbjct: 117 ARRVLEMLGFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLW 176 Query: 186 DLFREIHEEGRTLVIVTHDPEVAQ-EAQRVIRIRDG 220 R+ +GRT++ +HDP+ A+ E+ RV+ + G Sbjct: 177 ASLRKAF-KGRTVLFSSHDPQEAEAESDRVLIMHRG 211 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 95.9 bits (237), Expect = 8e-22 Identities = 68/217 (31%), Positives = 114/217 (52%), Gaps = 8/217 (3%) Query: 5 VVRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGG 64 ++ V V K + G + AL+GVS V +GE V ++GP+G+GK+TL ++I + +P G Sbjct: 4 ILDVRDVYKRF----GGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRG 59 Query: 65 KVFIEEEDVSRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPSKERRR 124 +V + D++ +R I FQ L LTV+ NV + +E R Sbjct: 60 RVIYKGVDITGWPAYRRSRAG---IARTFQIVRPLANLTVLNNVIVGALLRTNDIREARE 116 Query: 125 RAIGALERVGLSHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKI 184 RA+ A++ VGL+ + +L+ E++R+ +ARAL T+P ++L DE L + + Sbjct: 117 RAMEAIDMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDL 176 Query: 185 LDLFREIHEEGRTLVIVTHDPE-VAQEAQRVIRIRDG 220 + EI + G T+++V H V A+RVI + G Sbjct: 177 VYTLLEISKRGITIIMVEHVMRAVMNFAERVIVLHFG 213 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 94.7 bits (234), Expect = 2e-21 Identities = 68/216 (31%), Positives = 113/216 (52%), Gaps = 26/216 (12%) Query: 5 VVRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGG 64 ++RVE + K + G + AL V++ +E+G+ ++GP+GSGK+TL+++I P GG Sbjct: 6 ILRVEDLEKRF----GGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGG 61 Query: 65 KVFIEEEDVSRLSERELARIRNRKIGFV--FQQFNLLPRLTVVENVETP-------LIYA 115 +V + D++ +S E++ K+G V FQ LTV+ENV T + A Sbjct: 62 RVLFKGRDITGMSPHEIS-----KLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLA 116 Query: 116 GVP-------SKERRRRAIGALERVGLSHRLSHRPTELSGGERQRVAIARALVTEPLIIL 168 G+ K RA L VGL H R ELSGG+ + + IARA++ +I+ Sbjct: 117 GLARRLWLGFEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMII 176 Query: 169 ADEPTGALDTKTGRKILDLFREI-HEEGRTLVIVTH 203 DEP ++ + I++ + + E+G T +I+ H Sbjct: 177 MDEPAAGVNPRLAGSIMERIKYLAREKGITFLIIEH 212 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 94.4 bits (233), Expect = 2e-21 Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 10/222 (4%) Query: 5 VVRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGG 64 +V E +VK+Y G A+ GVS + +GE +++GP+G+GK+T + ++ L PT G Sbjct: 6 MVVAEELVKDY----GGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSG 61 Query: 65 KVFIEEEDVSRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPSKERRR 124 + +I + R E +R R IG V Q ++ +NV G+PS E R Sbjct: 62 EAWIAGYSIVR----EPGNVR-RVIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEARE 116 Query: 125 RAIGALERVGLSHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKI 184 R L+ + L R SGG R+++ IA +LV P ++ DEPT LD + R + Sbjct: 117 RTREVLDYLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSL 176 Query: 185 LDLFREIHEEGRTLVIVTHDPEVAQE-AQRVIRIRDGLIEEE 225 ++ T+++ TH E A+ + RV I G I E Sbjct: 177 WRYIEDLKRSAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAE 218 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 88.6 bits (218), Expect = 1e-19 Identities = 62/204 (30%), Positives = 107/204 (52%), Gaps = 18/204 (8%) Query: 22 VSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLI-GCLDVPTG----GKVFIEEEDVSRL 76 + ++ +S+ VEKG ++GP+G+GK+TL+ + G + G G + +E ED++ Sbjct: 18 ILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNR 77 Query: 77 SERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPSKERRRRAIGALERVGLS 136 E+AR R + +V + + LT EN+ + + YA S++ R + R L Sbjct: 78 EPDEIAR---RGVIYVMEGRRIFKELTTEENLVS-VAYAAGASRDDIRSVLSYFPR--LK 131 Query: 137 HRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKILDLFREIH-EEG 195 RL + LSGGE+Q +AIA AL+ P +++ DEP+ L K +I + +H EEG Sbjct: 132 ERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHREEG 191 Query: 196 RTLVIVTHDPEVAQEAQRVIRIRD 219 T+++ Q A++ + I D Sbjct: 192 LTILL------AEQNARKALEISD 209 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 87.0 bits (214), Expect = 3e-19 Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 14/196 (7%) Query: 12 VKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGKVFIEEE 71 VK + G AL GVS+ V KGE VA++G +G+GK+T + I L P G + + Sbjct: 9 VKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIWQGR 68 Query: 72 DVSRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPSKERRRRAIGALE 131 D++ L + I V + + PRLTV EN+ ++ + +LE Sbjct: 69 DITGLPAFKRVE---EGISHVPEGRGIFPRLTVYENLRV-----AASTRRAKEHFQDSLE 120 Query: 132 RVG-----LSHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKILD 186 +V L R S LSGGE+Q +AIARAL+ P++++ DEP+ L K R ++ Sbjct: 121 QVYTIFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIY 180 Query: 187 LFREIHEE-GRTLVIV 201 L + EE G T+++V Sbjct: 181 LASRLREELGVTILLV 196 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 86.7 bits (213), Expect = 5e-19 Identities = 72/223 (32%), Positives = 112/223 (50%), Gaps = 16/223 (7%) Query: 5 VVRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGG 64 V+ GVVK+YR G+ V+ V + V +GE V ++GP+G+GK+TL+ + L GG Sbjct: 4 VLEARGVVKKYR-GQPVLDR---VDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGG 59 Query: 65 KVFIEEEDVSRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPSKERRR 124 +V + D R +G VF++ NL + VVE +E+ G Sbjct: 60 RVLLNGLDPWREPRAR------EGVGVVFERPNLPSSMPVVEFLESAAAIIGSSPS---- 109 Query: 125 RAIGALERVGLSHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKI 184 R A+ GL +LS G +QR AIA AL+ EP ++ADEPT LD R++ Sbjct: 110 RVDWAIRAAGLEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREV 169 Query: 185 LDLFREIH-EEGRTLVIVTH-DPEVAQEAQRVIRIRDGLIEEE 225 L L ++ E G +L++ +H E+ + A R+ + G + E Sbjct: 170 LRLLARLNREHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAE 212 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 78.6 bits (192), Expect = 1e-16 Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 15/205 (7%) Query: 6 VRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGK 65 VRVE + Y GE V+S GV++ V I+GP+G+GK+T + I L P G+ Sbjct: 3 VRVEDLTVAYN-GEPVLS---GVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGR 58 Query: 66 VFIEEEDVSRLSERELARIRNRKIGFVFQQFNL--LPRLTVVENVETPLIYAGVPSKERR 123 VF++ + + E + R G+V Q + L +TV E VET L GV R Sbjct: 59 VFLDGFEATGRPE-----MVGRYAGYVPQNPSAPKLSPMTVREFVETSLRLRGVT--RAR 111 Query: 124 RRAIGALERVGLSHR-LSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGR 182 RA+ L +G+ L R ELS G QRV IARA+ +P +++ DEP ++D Sbjct: 112 ERAVEVLHTLGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRM 171 Query: 183 KILDLFREIHEEGRTLVIVTHDPEV 207 +I + + E R +++ +HDP + Sbjct: 172 EIARIIAGLARE-RLVLMTSHDPSL 195 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 77.8 bits (190), Expect = 2e-16 Identities = 72/231 (31%), Positives = 104/231 (45%), Gaps = 38/231 (16%) Query: 5 VVRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGG 64 V+ VEG+VK Y G V ALRGVS V GE +GP+G+GK+T + ++ PT G Sbjct: 4 VIEVEGLVKRY----GSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSG 59 Query: 65 --KVFIEEEDVSRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPSKER 122 +VF E L + +R R++G+V +F Y GV Sbjct: 60 SARVFGVE-----LYNPGASGVR-RRVGYVPGEFE---------------FYGGVSGGRM 98 Query: 123 RR---RAIGALERVGLSHRLSHRPTEL-------SGGERQRVAIARALVTEPLIILADEP 172 R +G R + L P L S G +Q +A+ A EP +++ DEP Sbjct: 99 LDYWCRLVGGCSRGVVRELLEAFPLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEP 158 Query: 173 TGALDTKTGRKILDLFREIHEEGRTLVIVTHD-PEVAQEAQRVIRIRDGLI 222 T LD ++LD R EG T+ +H EV + A RV +R G++ Sbjct: 159 TTGLDPLARGRVLDFVRSKAREGVTVFFSSHVLSEVQRVADRVGLLRSGVL 209 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 77.0 bits (188), Expect = 4e-16 Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 21/208 (10%) Query: 20 GVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGKVFIEEEDVSRLSER 79 G V+AL VS+ V +GE + I+GP+G+GK++L+++I + P G+V+ + D++ L Sbjct: 12 GGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDITGLKPH 71 Query: 80 ELARIRNRKIGFVFQQFNLLPRLTVVENVET---PLIYAGVPSK------------ERRR 124 + + + FQ L +TV+EN+ P + K E R Sbjct: 72 QRITL---GLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWEVEARE 128 Query: 125 RAIGALERVGLSHRLSHRPT-ELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRK 183 RA ++ + L H H P L G +++V +A AL P ++L DEP L + Sbjct: 129 RAEHVIDLLDL-HEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEKED 187 Query: 184 ILDLFREIHEE-GRTLVIVTHDPEVAQE 210 I+ E E T+V++ HD EV + Sbjct: 188 IVRAIIETSETMHTTMVLIEHDMEVVTD 215 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 76.6 bits (187), Expect = 5e-16 Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 23/189 (12%) Query: 24 ALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGKVFIEEEDVSRLSERELAR 83 A R V G + ++GP+G+GK+TL+ I L P+ G++ +E Sbjct: 19 AYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVEG------------- 64 Query: 84 IRNRKIGF--VFQQFNLLPRLTVVENVETPLIYA-------GVPSKERRRRAIGALERVG 134 + R GF + + +P L VV TP I G S E R RA ALE VG Sbjct: 65 VNPRSPGFEKLLPRIGYVPELPVVPLWTTPCILLETLARLEGYTSVEARVRAREALEVVG 124 Query: 135 LSHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKILDLFREIHEE 194 L+ +LS G R+RV +A+A + E +++ DEP LD + ++ +L R + E Sbjct: 125 LAGECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVARE 184 Query: 195 GRTLVIVTH 203 G T+++ +H Sbjct: 185 GATVIVSSH 193 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 75.9 bits (185), Expect = 8e-16 Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 13/201 (6%) Query: 25 LRGVSIGVEKGEYVAIMGPSGSGKSTLMH-LIGCLDVPTGGKVFIEEEDVSRLSERELAR 83 LRGVS+ V+ GE + G +G+GK+T + L+G L +G + + ER Sbjct: 30 LRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPWGGGFERVKG- 88 Query: 84 IRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPSKERRRRAI--GALERVGLSHR-LS 140 ++G++ + ++ RLT +EN+ L YA + S R + A+ GLS L+ Sbjct: 89 ----EVGYLPEDASVYERLTGMENI---LFYARLYSGWRDVEELVENAVFYSGLSREDLA 141 Query: 141 HRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKILDLFREIHEEGRTLVI 200 R S G ++R+ + L+++P +++ DEPT +D +I + R + EGR +++ Sbjct: 142 RRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSREGRAILV 201 Query: 201 VTHDPEVAQE-AQRVIRIRDG 220 THD +A+E A RV I G Sbjct: 202 TTHDLALAEEIADRVTIIHGG 222 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 75.1 bits (183), Expect = 1e-15 Identities = 67/203 (33%), Positives = 96/203 (47%), Gaps = 16/203 (7%) Query: 25 LRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGKVFIEEEDVSRLSERELARI 84 LRGVS+ + GE V + G +GSGK+TL+ L L P+ G+V R Sbjct: 20 LRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRV-----------SWGCPRG 68 Query: 85 RNRKIGFVFQQFNLLPRLTVVENVET-PLIYAGVPSKERRRRAIGALERVGLSHRLSHRP 143 +G+V + LTV ENVE ++ G S A A +GL SH Sbjct: 69 PRGCVGYVGHTPMVYGDLTVWENVEFFSSLHGG--SLGDYPLAAEAWRLLGLEKYGSHLA 126 Query: 144 TELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKILDLFREIHEEGRTLVIVTH 203 ++LS G R+R+ + RAL+ EP ++L DE LD + L R EG L++ T Sbjct: 127 SQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLLRLALGEGLALLMTTP 186 Query: 204 --DPEVAQEAQRVIRIRDGLIEE 224 +P A RV ++DGL+ E Sbjct: 187 LLEPRYLGLASRVYTLQDGLLAE 209 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 74.3 bits (181), Expect = 2e-15 Identities = 65/200 (32%), Positives = 94/200 (47%), Gaps = 19/200 (9%) Query: 5 VVRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGG 64 VVR+ V Y G V LRGVS+ +G + GP+G GKST++ + L G Sbjct: 3 VVRLRDVWYRYPGGGWV---LRGVSLEAPRG-ITLLAGPTGGGKSTILRVAAGLATRIYG 58 Query: 65 KVFIEEEDVSRLSERELARIRNRKIGFVFQQFNL-LPRLTVVENVETPLIYAGVPSKERR 123 E + R + + V Q ++L + LT E +E +G+P E R Sbjct: 59 GYLRGEVEA-----------RGKPV-LVPQDYDLFILSLTPREELEYCYEASGLPPWEAR 106 Query: 124 RRAIGALERVGLSHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRK 183 R A+ E +G+ L R ++LS GERQRVAIA AL ++L DEP D Sbjct: 107 REAVRLAEELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVES 166 Query: 184 ILDLFREIHEEGRTLVIVTH 203 ++ L R + EG +V+ H Sbjct: 167 LIRLLRRLDVEG--VVVAEH 184 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 70.1 bits (170), Expect = 4e-14 Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 6/205 (2%) Query: 20 GVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGKVFIEEEDVSRLSER 79 G V AL+GV+ G A++G +G+GK+TL+ I + P G++ ++ ++ Sbjct: 16 GGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPKGPG 75 Query: 80 ELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPSKERRRRAI--GALERVGLSH 137 + R I Q + P + E++ L+ AG + R+ R + A E +GL+ Sbjct: 76 DSLR---SGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAEASEALGLNI 132 Query: 138 RLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKILDLFREIHEEGRT 197 E+ ERQR+ + +AL +L DEPT L + ++L+ + G Sbjct: 133 DPDRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAASGAA 192 Query: 198 LVIVTHD-PEVAQEAQRVIRIRDGL 221 +++VTH E + A R++ +R G+ Sbjct: 193 VLLVTHRIGEAMEHADRLVILRKGV 217 Score = 57.8 bits (138), Expect = 2e-10 Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 17/187 (9%) Query: 25 LRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGKVFIEEEDVSR---LSEREL 81 LR + V +GE V + G +G+G+ L +I L P G++ I DV+R L+ R L Sbjct: 270 LRMARLEVRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRL 329 Query: 82 AR--IRNRKIGFVFQQFNLLPRLTVVENVETPLIYAG----VPSKERRRRAIGALERVGL 135 I ++G L+P ++ N+ + A V + + A + +G+ Sbjct: 330 GLGVIPEERLGHA-----LVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGI 384 Query: 136 SHRLSHRPT--ELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKILDLFREIHE 193 +S R ELSGG QR+ +AR L +P +++A P LD + + + ++ R E Sbjct: 385 K-AVSPRQMVDELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRMSSE 443 Query: 194 EGRTLVI 200 G LVI Sbjct: 444 RGGVLVI 450 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 65.5 bits (158), Expect = 1e-12 Identities = 52/204 (25%), Positives = 100/204 (49%), Gaps = 26/204 (12%) Query: 16 RMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDV--PTGGKVFIEEEDV 73 ++GE VV L V ++ GE A+MGP+GSGKS+L ++I ++ G + ++ E + Sbjct: 11 KIGEKVV--LNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDILLDGESI 68 Query: 74 SRLSERELARIRNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPSK------------E 121 L E R + +F P++ V + LI A V + + Sbjct: 69 KELPPEE------RALKGIFMAQQDPPQIPGVRL--SSLIIAFVNKRLGAQDLSKPADPK 120 Query: 122 RRRRAIGALERVGLSHRLSHRPTEL--SGGERQRVAIARALVTEPLIILADEPTGALDTK 179 +R ++GL + +R + SGGE++R + +A++ +P I++ DEP LD Sbjct: 121 IVKRMYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDID 180 Query: 180 TGRKILDLFREIHEEGRTLVIVTH 203 + + + +++ + GR ++++TH Sbjct: 181 GLKIVAEFIKQLRDSGRGVMLITH 204 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 62.8 bits (151), Expect = 7e-12 Identities = 65/224 (29%), Positives = 98/224 (43%), Gaps = 23/224 (10%) Query: 6 VRVEGVVKEYRMGEGVVSALRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGK 65 V EGV K R+G V L+ VS+ V +G ++GP+G+GK+TL + L G+ Sbjct: 9 VEAEGVWK--RLGGRWV--LKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGR 64 Query: 66 VFIEEEDVSRLSERELARIRNRKIGFVFQQFNLLPR----LTVVENVETPLIYAGVPSKE 121 V + E V R G +F++ LP + E +YA + E Sbjct: 65 VALLGEPVERAG------------GSLFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGVE 112 Query: 122 RRRRAIGALERV-GLSHRLSHRPTELSGGERQRVAIARALVTEPLIILADEPTGALDTKT 180 + R+ GL RL R S G R+R+ +A L +P + + DEPT LD Sbjct: 113 DLEGYLEEASRLSGLGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVY 172 Query: 181 GRKILDLFREIHE-EGRTLVIVTHDP-EVAQEAQRVIRIRDGLI 222 I L +E E G T+++ +H+ EV + I G I Sbjct: 173 SVGIRRLLKEYSERHGVTVLLSSHNMYEVESVCSEITMISSGRI 216 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 60.1 bits (144), Expect = 5e-11 Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 22/194 (11%) Query: 25 LRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGKVFIEEEDVSRLSERELARI 84 L+ V+I V G A++G SG+GK+TL+ +I + GG+ + + V ++ A Sbjct: 456 LKDVNITVNPGSVAAVVGASGAGKTTLLRMILGKALGIGGEGYRPDSGVVKIPTNTKAA- 514 Query: 85 RNRKIGFVFQQFNLLPRL---TVVENVETPLIYAGVPSKERRRRAIGALERVGLSHRLSH 141 L P T++E+V + L G P A+ L VGL + Sbjct: 515 -------ALLPGELEPSFGGETLLEHVASKL---GDPG-----AAVEVLSSVGLGDAIFF 559 Query: 142 RPT--ELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKIL-DLFREIHEEGRTL 198 R + ELS G+++R +A L P +++ DE LD T R+I L + +G TL Sbjct: 560 RASFGELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLTARRIARKLGKLARSKGITL 619 Query: 199 VIVTHDPEVAQEAQ 212 ++ T+ PE+ Q Sbjct: 620 IVSTNRPEILDALQ 633 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 55.1 bits (131), Expect = 1e-09 Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 29/199 (14%) Query: 25 LRGVSIGVEKGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGKVFIEEEDVSRLSERELARI 84 LR V++ + +G AI+G +GSGK+TL+ L L P G V E R+ A + Sbjct: 7 LRDVTLSIPRG-VTAILGANGSGKTTLLKLAARLLKPDRGSV----EGPRRVG----AAL 57 Query: 85 RNRKIGFVFQQFNLLPRLTVVENVETPLIYAGVPSKERRRRAIGALERVGLSHRLSHRPT 144 +N +GF+ TV E++ + R A+ L GL + P Sbjct: 58 QNPYLGFLGP--------TVAEDL--------ARTAGGRGEALKLLREAGLEYASERSPY 101 Query: 145 ELSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKILDLFREIHEEGRTLVIVTHD 204 LS GE + +++ A+ P ++ DEPT LD R + L + G +++ HD Sbjct: 102 TLSMGEARILSVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLIARL---GVPVLVAGHD 158 Query: 205 PE-VAQEAQRVIRIRDGLI 222 + A A + +RDG + Sbjct: 159 IDFAAAVAGWAVILRDGRV 177 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 53.1 bits (126), Expect = 6e-09 Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 12/195 (6%) Query: 34 KGEYVAIMGPSGSGKSTLMHLIGCLDVPTGGKVFIEEEDVSRLSERELARIRNRKIGFVF 93 +G+ V ++G +G+GK+T + ++ P G+V E + + L R R ++ F Sbjct: 105 EGQVVGLLGRNGTGKTTALRILAGELKPNLGRVEGGEPEWDEI----LKRFRGSELQTYF 160 Query: 94 QQF-----NLLPRLTVVENVETPL---IYAGVPSKERRRRAIGALERVGLSHRLSHRPTE 145 ++ + ++ VE V L + + + R A+ E+VGL + Sbjct: 161 RKLVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGVALELAEQVGLDKVFDRDVRQ 220 Query: 146 LSGGERQRVAIARALVTEPLIILADEPTGALDTKTGRKILDLFREIHEEGRTLVIVTHDP 205 LSGGE Q++ I L + + + DEP+ LD + ++ L G +++V HD Sbjct: 221 LSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAARPGAYVMVVEHDL 280 Query: 206 EVAQEAQRVIRIRDG 220 V ++ I G Sbjct: 281 AVLDYVSDLVHILYG 295 Score = 52.8 bits (125), Expect = 7e-09 Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 24/175 (13%) Query: 35 GEYVAIMGPSGSGKSTLMHLIGCLDVPTGGKVFIEEEDVSRLSERELARIRNRKIGFVFQ 94 GE + + GP+G GK+T + + P G V+ ED+ ++ + Q Sbjct: 383 GEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYVEDL--------------RVSYKPQ 428 Query: 95 QFN--LLPRLTV--VENVETPLIYAGVPSKERRRRAIGALERVGLSHRLSHRPTELSGGE 150 + LP TV V P I A P + +R+ L L R LSGGE Sbjct: 429 YISPESLPDATVEQVLKAANPAILA--PGSWLNLELV---KRMRLDKLLERRVRTLSGGE 483 Query: 151 RQRVAIARALVTEPLIILADEPTGALDTKTGRKILDLFREIHE-EGRTLVIVTHD 204 Q+VA+A AL E + L DEP+ LD + + R I E ++V HD Sbjct: 484 LQKVAVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALVVEHD 538 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 251,088 Number of Sequences: 1700 Number of extensions: 12299 Number of successful extensions: 206 Number of sequences better than 1.0e-04: 41 Number of HSP's better than 0.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 98 Number of HSP's gapped (non-prelim): 48 length of query: 226 length of database: 492,079 effective HSP length: 74 effective length of query: 152 effective length of database: 366,279 effective search space: 55674408 effective search space used: 55674408 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718697|ref|YP_003874229.1| hypothetical protein STHERM_c10100 [Spirochaeta thermophila DSM 6192] (398 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 313,919 Number of Sequences: 1700 Number of extensions: 11795 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 398 length of database: 492,079 effective HSP length: 79 effective length of query: 319 effective length of database: 357,779 effective search space: 114131501 effective search space used: 114131501 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718698|ref|YP_003874230.1| LysM domain/M23/M37 peptidase domain-containing protein [Spirochaeta thermophila DSM 6192] (260 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.140 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 343,677 Number of Sequences: 1700 Number of extensions: 17946 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 0 length of query: 260 length of database: 492,079 effective HSP length: 75 effective length of query: 185 effective length of database: 364,579 effective search space: 67447115 effective search space used: 67447115 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718699|ref|YP_003874231.1| RNA polymerase sigma factor RpoD [Spirochaeta thermophila DSM 6192] (338 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 264,802 Number of Sequences: 1700 Number of extensions: 9898 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 338 length of database: 492,079 effective HSP length: 77 effective length of query: 261 effective length of database: 361,179 effective search space: 94267719 effective search space used: 94267719 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718700|ref|YP_003874232.1| hypothetical protein STHERM_c10130 [Spirochaeta thermophila DSM 6192] (182 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430914|ref|NP_147015.2| ATP:cobalamin adenosyltransferase ... 61 2e-11 >gi|118430914|ref|NP_147015.2| ATP:cobalamin adenosyltransferase [Aeropyrum pernix K1] Length = 180 Score = 61.2 bits (147), Expect = 2e-11 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 16/170 (9%) Query: 8 TRGGDEGVS---SLSSGE---RRPKDDLVFEVLGDLDELVSWLGVLKASLAES--EFRLS 59 TR GD G + +L G R PKD + E LG LDE S +G+ ++ L+ E + Sbjct: 6 TRTGDSGETWCFALGEGRKPVRVPKDHPLIEFLGTLDEANSLIGLARSFLSGEGLEGSID 65 Query: 60 DVLEEIQRRLFVLGAQVASVGKGDHRRSLSSDDVEELEKEEADLLRKIPPLRGFVLPGES 119 + L+ +QR LF +G +S + +D+++LE + PLR FVLP S Sbjct: 66 NDLKWMQRLLFNIGFTFSST-----EPRVGEEDLKKLESMADSYYGE--PLRRFVLPAGS 118 Query: 120 LASGYADLARAVCRRVERSLVRYIRARGMTDLAEGQRYLNRLSDYLFVLA 169 ARA RR ER LV +R+ G++ R +NR SD LF +A Sbjct: 119 SKVAAIHAARAAVRRAERRLVTAMRS-GVSVDPLILRIVNRASDALFAMA 167 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 196,743 Number of Sequences: 1700 Number of extensions: 8676 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 1 length of query: 182 length of database: 492,079 effective HSP length: 71 effective length of query: 111 effective length of database: 371,379 effective search space: 41223069 effective search space used: 41223069 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718701|ref|YP_003874233.1| mutator protein MutT [Spirochaeta thermophila DSM 6192] (178 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431721|ref|NP_148370.2| ADP-ribose pyrophosphatase [Aeropy... 53 4e-09 >gi|118431721|ref|NP_148370.2| ADP-ribose pyrophosphatase [Aeropyrum pernix K1] Length = 156 Score = 53.1 bits (126), Expect = 4e-09 Identities = 24/50 (48%), Positives = 32/50 (64%) Query: 30 CFVFEGERVLLIHKKRGLGKGKINAPGGRIEPGETALEAAVRETQEEVGL 79 C VF G R+LL+ +K G+GK + PGG + GET E A RE +EE G+ Sbjct: 15 CLVFRGGRILLVKRKYPPGRGKWSIPGGHVRLGETLEEVAARELEEETGI 64 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 206,238 Number of Sequences: 1700 Number of extensions: 9409 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 1 length of query: 178 length of database: 492,079 effective HSP length: 71 effective length of query: 107 effective length of database: 371,379 effective search space: 39737553 effective search space used: 39737553 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718702|ref|YP_003874234.1| cellulase, glycosyl hydrolase family 5 [Spirochaeta thermophila DSM 6192] (431 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601650|ref|NP_148191.1| hypothetical protein APE_1824 [Aero... 179 1e-46 >gi|14601650|ref|NP_148191.1| hypothetical protein APE_1824 [Aeropyrum pernix K1] Length = 385 Score = 179 bits (454), Expect = 1e-46 Identities = 126/382 (32%), Positives = 187/382 (48%), Gaps = 40/382 (10%) Query: 23 TGSADLPLHSGHVPAWLAERMRRLSGPLAXXXXXXXXXXXXXSRLADPLWFQGFGALLGM 82 TG ADLPLHSG VP W+ + M RL+ +A LADP WFQ F +GM Sbjct: 2 TGVADLPLHSGKVPPWMLKVMERLARSIARAIVEIHGPDAVVRGLADPYWFQAFNNAIGM 61 Query: 83 DWHSSGVTTSVLYALKRALDERPELGIEVCGGRGRFSRKTPEQLLAFAERTGLEGEALVK 142 DW SSG TT VL A+ R + +LG V GG+GR R ++ A A+R G++ L+ Sbjct: 62 DWDSSGSTT-VLLAVLRKVSLSEDLGFIVVGGKGRRMRGIDSEVEALADRVGIDASKLLG 120 Query: 143 TSRLVAKVDNTCVQDGYQLYLHAFVVTRSGKWVVIQQGMNPQERTARRYHWYSQKVSDFF 202 S+ +V N +QDGY Y+HA V + +G V +QQGMN + +RRYH + V Sbjct: 121 FSQAAGRVSNVLLQDGYSPYIHAVVASETGLMVAVQQGMNVEAGLSRRYHVDRESVE--- 177 Query: 203 ADPHTAVVG--PHRGRIINLAASGAAPAREGILDFV---AQPLKTQLGELARAVDCV--- 254 +P V G H G ++N AS + AR+ +D A ++ + E +R V Sbjct: 178 -EPFRGVSGILSHSG-VLNAVASESKEARKLYVDLAREGASRIERMVLEASRMVSGAPTL 235 Query: 255 -----RMP-------------SRHHVAPLDVDPVRLGAVLAVAHEASLREFSEFLLLKGM 296 R P S+ + P+ +D R L + + + + L G+ Sbjct: 236 LDYMDRHPGASHRNASGGPRSSKPYYKPVPIDS-RTRKYLEMLADNPPVDEQDLLTAPGL 294 Query: 297 GPRTLQALALVAEVIYGAPVRFTDPAR-------FSFAHGGKDGHPFPVLTGVYDRVIEE 349 P+ ++ALALVA++IYG P DP ++++ GGKDG P+ +RV+ Sbjct: 295 TPKVVRALALVADIIYGVPTSHRDPVSTPLNPFVYAYSVGGKDGVPYRFDRRTAERVVLA 354 Query: 350 LDLLVGRMKADRSEKRASLQKL 371 L+ V + R EK +L++L Sbjct: 355 LEEAVELARLGRDEKLRALRRL 376 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 444,027 Number of Sequences: 1700 Number of extensions: 19770 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 1 length of query: 431 length of database: 492,079 effective HSP length: 79 effective length of query: 352 effective length of database: 357,779 effective search space: 125938208 effective search space used: 125938208 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718703|ref|YP_003874235.1| maltosaccharide-binding protein [Spirochaeta thermophila DSM 6192] (408 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 378,676 Number of Sequences: 1700 Number of extensions: 16199 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 408 length of database: 492,079 effective HSP length: 79 effective length of query: 329 effective length of database: 357,779 effective search space: 117709291 effective search space used: 117709291 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718704|ref|YP_003874236.1| transporter [Spirochaeta thermophila DSM 6192] (335 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum... 87 6e-19 gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 80 7e-17 gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyru... 62 3e-11 >gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum pernix K1] Length = 288 Score = 87.0 bits (214), Expect = 6e-19 Identities = 67/285 (23%), Positives = 128/285 (44%), Gaps = 22/285 (7%) Query: 46 YMLLAPGIVGLILLVVYPLVFELALAFSNMSLRTFKHPTFGIKEGIDNFVRVFTRPVLKQ 105 ++LL+P I+ L + + YP++ +AF +K G +F V Sbjct: 15 WLLLSPTILYLAVFIAYPIIDSFRIAF--------------VKNGSISFEAVDFLLYSPL 60 Query: 106 TYFFPIFFRTVLWTVIQVSAHVTLGLGLAILLNRPMFLKNIYKAFLILPWAIPDIISGLA 165 + F+ T L ++ + L L ILL + ++ L++P A+ D+ +GL Sbjct: 61 SEFWSALKYTFLLAILVIPTETLLALTAVILLFKRFRGRDAVIYVLVMPLALSDLAAGLI 120 Query: 166 WRGEFHYEYGVFNIILTRLG--ADPIPWKS-DPLW-NFIAMNITNIWLGVPFMMVISLGG 221 W + G N +L +G +DPI + + W F+A+ + +W + VI G Sbjct: 121 WYSMLTGK-GFLNKLLLNMGLISDPIIFFGYENRWLTFLAVYLAEVWRSTAIVFVILFAG 179 Query: 222 LQSISKEYYEAAQIDGATSAQKLWYVTLPLLKPILTPAVILGVIWTFNNFNVPYFINQNE 281 Q I+KE +EAA++ GA+ KL ++ +P++KP L A+++ ++ F F V + + + Sbjct: 180 AQLINKEVFEAAEVFGASFYVKLRHILIPMIKPSLQAALLIRTLFAFQVFAVVWILAGRD 239 Query: 282 LESSDLLVTALFRAAFEYNQYGXXXXXXXXXXXXXXXXSLWYIRI 326 + +L + + E ++Y + YIR+ Sbjct: 240 I---PVLAGEAYYSIVELHKYDVAALYAIVIALLSASIGVVYIRV 281 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 80.1 bits (196), Expect = 7e-17 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 3/162 (1%) Query: 116 VLWTVIQVSAHVTLGLGLAILLNRPMFLKNIYKAFLILPWAIPDIISGLAWRGEFHYEYG 175 ++W + + LGL LA LL + F +I K + + IP ++ GL R F G Sbjct: 81 IIWMALHIPLVTFLGLFLAYLL-KYTFGSSIVKTIVFIGMVIPMVVGGLIVRFMFDEYVG 139 Query: 176 VFNIILTRLGADPIP--WKSDPLWNFIAMNITNIWLGVPFMMVISLGGLQSISKEYYEAA 233 V ++ LG D + W + P + +++ + ++WL F + + L SI + EAA Sbjct: 140 VVPLVFKALGVDFLAKTWTNYPQLSLLSLILGSVWLWTGFSLTVYSAALGSIPSSFIEAA 199 Query: 234 QIDGATSAQKLWYVTLPLLKPILTPAVILGVIWTFNNFNVPY 275 +IDGA W + PL++P V++ ++W F++ Y Sbjct: 200 RIDGAGHWHIFWKIVFPLVRPATIIVVVMTMLWDLKIFDIVY 241 >gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyrum pernix K1] Length = 314 Score = 61.6 bits (148), Expect = 3e-11 Identities = 60/218 (27%), Positives = 97/218 (44%), Gaps = 14/218 (6%) Query: 45 LYMLLAPGIVGLILLVVYPLVFELALAFSNMSLRTFKHPTFGIKEGIDNFVRVFTRPVLK 104 L L P ++ +I PL+ + +F+NM F I G+ N+ +V Sbjct: 9 LAFFLGPALLIVITFFFLPLLLTVYTSFTNMRNWNVDAYLFDIV-GLYNY-KVLVHFAKY 66 Query: 105 QTYFFPIFFRTVLWTVIQVSAHVTLGLGLAILLNRPMFLKNI----YKAFLILPWAIPDI 160 F TV++ + + +V GL LAIL FL+ Y+ +LP P Sbjct: 67 DPMFRNALITTVVFVAVTLVVNVLGGLTLAILT---FFLEERISIHYRLLWLLPRMTPVA 123 Query: 161 ISGLAWRGEFHYE-YGVFNIILTRLGA--DPIPWKSD--PLWNFIAMNITNIWLGVPFMM 215 + L W FH + G N IL G PI W S PL + + N +GV F M Sbjct: 124 VYSLLWYYFFHSDAIGTLNRILLLAGVIDKPINWGSYMLPLGTWWILIFVNGLVGVSFGM 183 Query: 216 VISLGGLQSISKEYYEAAQIDGATSAQKLWYVTLPLLK 253 ++ ++SI EY AA++DGA++ + + +P+++ Sbjct: 184 IVFYSAIRSIPWEYIAAARVDGASNLVIIRRIIVPMIR 221 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.144 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 293,890 Number of Sequences: 1700 Number of extensions: 11576 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 3 length of query: 335 length of database: 492,079 effective HSP length: 77 effective length of query: 258 effective length of database: 361,179 effective search space: 93184182 effective search space used: 93184182 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718705|ref|YP_003874237.1| transporter [Spirochaeta thermophila DSM 6192] (283 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 124 3e-30 gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyru... 84 4e-18 gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum... 81 3e-17 gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease... 40 5e-05 gi|118431570|ref|NP_148130.2| ABC transporter permease [Aeropyru... 40 9e-05 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 124 bits (311), Expect = 3e-30 Identities = 70/260 (26%), Positives = 128/260 (49%), Gaps = 3/260 (1%) Query: 26 VIALFPILRIVSVSLRP-GDRLLSTSLRIIPEGATLENYYNVLFKKDFFL--WLWNSLVV 82 ++ L P + + VS+RP G+ ++ I+ T++NY + + NSL+V Sbjct: 27 LVWLLPFIGLFMVSVRPYGEVIVKGWWNIVDATFTMDNYIKAWSYDPYSVSGGYINSLIV 86 Query: 83 SVTTAFIGLMLASTAAYGFSRWNFPGKKAGLVFLLATQMIPASMMMIPLYILAARLGFIN 142 ++ I + AS AAYGFSR++FP K + + +P ++++PL++L LG IN Sbjct: 87 ALPATVIPVAAASFAAYGFSRFSFPLKSYLFLVTILLMALPQQIVVVPLFLLLKNLGLIN 146 Query: 143 TYRGLVLAYSVGSIPFSVWILKGYYDSISASLEEAAMIDGATRMQTFYRXXXXXXXXXXX 202 T+ G++L +S + + ++ +K ++D + +EEAA +DGA+ + FY+ Sbjct: 147 TFPGIILVHSAWGMAWIIFFMKNFFDILPREVEEAARVDGASDFRIFYKIVLPMSLPGIL 206 Query: 203 XAFLFNFMSAWKDFLLARIMLQKDFLFTWPLGLQQLQGQFRTSWGMFAAASIMVAIPVVA 262 A + F W F I L + + ++G + WG+ AA S+ +A Sbjct: 207 SASVLQFTWVWSSFFFELIFLIDPSKWVITQRIANMKGTYLVDWGLIAAGSVFAMAVPLA 266 Query: 263 LFLYTSRYLISGLTLGSVKG 282 +++ RY I G + KG Sbjct: 267 VYMLLQRYYIRGFVGWAAKG 286 >gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyrum pernix K1] Length = 302 Score = 84.0 bits (206), Expect = 4e-18 Identities = 49/213 (23%), Positives = 101/213 (47%), Gaps = 10/213 (4%) Query: 79 SLVVSVTTAFIGLMLASTAAYGFSRWNFPGKKAGLVFLLATQMIPASMMMIPLYILAARL 138 +L V+V A +++ AAY SR F G+ L+ P ++I +Y++ + Sbjct: 91 TLTVAVGVALTATLVSLLAAYSISRMEFKGRGVFTAGLIMLHAFPGVALIIGVYMIFRII 150 Query: 139 GFINTYRG--------LVLAYSVGSIPFSVWILKGYYDSISASLEEAAMIDGATRMQTFY 190 G + G ++LA + +P ++W+ KG++D I LE +A++DGA+R++ ++ Sbjct: 151 GDVLGVLGEEFYAIAYIILARAALEVPMAIWLFKGFFDKIPWELEWSALVDGASRVRVWW 210 Query: 191 RXXXXXXXXXXXXAFLFNFMSAWKDFLLARIMLQKDFLFTWPLGLQQLQGQFRT-SWGMF 249 +F F++ W++F+ + L+ + + P ++++ + Sbjct: 211 SILVPLVKPGIAAVLIFTFLAGWEEFIYFYVFLKPFGIDSLPTFIEEIVAAAENYQLTII 270 Query: 250 AAASIMVAIPVVALFLYTSRYLISGLTLGSVKG 282 AAA +P + F+ T R L+ + G +KG Sbjct: 271 AAAGTFYLLPTIVFFVLTQRLLLEAYS-GGLKG 302 >gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum pernix K1] Length = 270 Score = 81.3 bits (199), Expect = 3e-17 Identities = 70/268 (26%), Positives = 114/268 (42%), Gaps = 13/268 (4%) Query: 10 PLWF-RVFTHAVLIVACVIALFPILRIVSVSLRPGDRLLSTSLRIIPEGATLENYYN--V 66 P W + +A L V L P+ + + P D S + I+ TL++ + Sbjct: 5 PAWIGELARYAFLAVLVSWILVPLAISIVYAFTPLDVYYSNA--ILTTSFTLDHVKTLWI 62 Query: 67 LFKKDFFLWLWNSLVVSVTTAFIGLMLASTAAYGFSRWNFPGKKAGLVFLLATQMIPASM 126 L + FL S+ V T I +L Y +R+ FPG+ A + ++AT+M P + Sbjct: 63 LGAGEAFL---RSVAVGAMTVGISFLLGLPGGYALARYVFPGRDAVKLAIIATRMFPIIV 119 Query: 127 MMIPLYILAARLGFINTYRGLVLAYSVGSIPFSVWILKGYYDSISASLEEAAMIDGATRM 186 + + L LG +T GL LA++ ++PF V I + I LEEA MI G + + Sbjct: 120 ISVSLLKTFFNLGLNDTLIGLALAHTAMALPFVVIITGSIFGGIPRDLEEAGMIFGLSSI 179 Query: 187 QTFYRXXXXXXXXXXXXAFLFNFMSAWKDFLLARIMLQKDFLFTWPLGLQQLQGQFRTSW 246 F R A +F F+ +W + +A ++ L L L F T Sbjct: 180 MVFLRITLPLAAPGLTAAGMFTFLLSWNEVFMASVLT----LVNRTLPAFILNSAFATPI 235 Query: 247 GMFA-AASIMVAIPVVALFLYTSRYLIS 273 AA+ M+ +P + RYL++ Sbjct: 236 EPIRFAAAFMLILPALVFMFLARRYLVT 263 >gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease ModB [Aeropyrum pernix K1] Length = 261 Score = 40.4 bits (93), Expect = 5e-05 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 18/161 (11%) Query: 68 FKKDFFLWLWNSLVVSVTTAFIGLMLASTAAYGFSRWNFPGKKAGLV---FLLATQMIP- 123 F++ L L +S + SV + + LA+ AY +R G+ L+ LL + P Sbjct: 44 FRRSLVLSLGSSTISSV----LAVTLATAPAYAMARQE--GRLTRLISQLHLLLLSIPPV 97 Query: 124 ----ASMMMI----PLYILAARLGFINTYRGLVLAYSVGSIPFSVWILKGYYDSISASLE 175 A++++ PL ++ LG + + ++LA + + P +V +L G + + LE Sbjct: 98 GLGTAALILFTRYPPLNSISETLGLFFSPKAVILAQLLVTTPIAVSMLTGVFSMVPRELE 157 Query: 176 EAAMIDGATRMQTFYRXXXXXXXXXXXXAFLFNFMSAWKDF 216 EAA GA R+Q R A F A +F Sbjct: 158 EAAEAYGAGRLQILIRIVLPLSLPGILSALAVTFFRALGEF 198 >gi|118431570|ref|NP_148130.2| ABC transporter permease [Aeropyrum pernix K1] Length = 594 Score = 39.7 bits (91), Expect = 9e-05 Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 18/184 (9%) Query: 14 RVFTHAVLIVACVIALFPILRIVSVSLRPGDRLLSTSLRIIPEGATLENYYNVLFKKDFF 73 + + +LI V+++ P L ++ + + + T+ P+G TL++ VL Sbjct: 322 KALIYLILIPWIVVSISPQLGVLVYAF--SESWIGTT----PQGFTLDHMREVLSDSRVV 375 Query: 74 LWLWNSLVVSVTTAFIGLMLASTAAYGFSRWNFPGKKAGLVFLLATQMIPASMMMIPLYI 133 NS+ ++ + I +++A T +Y R + + + +LAT I + + L I Sbjct: 376 NAFRNSVTYALLASLISIVIAVTTSYSVERLRT--RLSEPLDVLATIPIALPGLALALGI 433 Query: 134 LA------ARLGFINTYRG----LVLAYSVGSIPFSVWILKGYYDSISASLEEAAMIDGA 183 L R ++ Y LVLAYSV PF+ + SLEEAAM GA Sbjct: 434 LIMFSTSFTRGTLLDPYEFPALFLVLAYSVRKSPFATRAAFAGLKHLHKSLEEAAMNLGA 493 Query: 184 TRMQ 187 R++ Sbjct: 494 RRLR 497 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.142 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 265,435 Number of Sequences: 1700 Number of extensions: 10484 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 5 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 6 length of query: 283 length of database: 492,079 effective HSP length: 76 effective length of query: 207 effective length of database: 362,879 effective search space: 75115953 effective search space used: 75115953 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718706|ref|YP_003874238.1| alpha-glucosidase 2 [Spirochaeta thermophila DSM 6192] (753 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 837,547 Number of Sequences: 1700 Number of extensions: 40189 Number of successful extensions: 94 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94 Number of HSP's gapped (non-prelim): 0 length of query: 753 length of database: 492,079 effective HSP length: 84 effective length of query: 669 effective length of database: 349,279 effective search space: 233667651 effective search space used: 233667651 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718707|ref|YP_003874239.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (338 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.140 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 342,984 Number of Sequences: 1700 Number of extensions: 15151 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 0 length of query: 338 length of database: 492,079 effective HSP length: 77 effective length of query: 261 effective length of database: 361,179 effective search space: 94267719 effective search space used: 94267719 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718708|ref|YP_003874240.1| hypothetical protein STHERM_c10210 [Spirochaeta thermophila DSM 6192] (98 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,457 Number of Sequences: 1700 Number of extensions: 3394 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 98 length of database: 492,079 effective HSP length: 63 effective length of query: 35 effective length of database: 384,979 effective search space: 13474265 effective search space used: 13474265 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718709|ref|YP_003874241.1| inner membrane protein [Spirochaeta thermophila DSM 6192] (233 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.468 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 283,381 Number of Sequences: 1700 Number of extensions: 14223 Number of successful extensions: 67 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 0 length of query: 233 length of database: 492,079 effective HSP length: 74 effective length of query: 159 effective length of database: 366,279 effective search space: 58238361 effective search space used: 58238361 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718710|ref|YP_003874242.1| hypothetical protein STHERM_c10230 [Spirochaeta thermophila DSM 6192] (587 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601607|ref|NP_148147.1| arginyl-tRNA synthetase [Aeropyrum ... 175 2e-45 >gi|14601607|ref|NP_148147.1| arginyl-tRNA synthetase [Aeropyrum pernix K1] Length = 644 Score = 175 bits (444), Expect = 2e-45 Identities = 164/618 (26%), Positives = 264/618 (42%), Gaps = 82/618 (13%) Query: 42 PPSSQFGDVAFPLFGFAKVFRTAPQKIAEEVVARLLPEG---AVRKIEGAGGYVNLFLDR 98 PP ++GD+ FPL FA+ + I E + +L G A +E GY+N+ D Sbjct: 37 PPRKEYGDLGFPLMRFARSSNASADSIVESLRGKLWERGITWASPTLEA--GYLNIVFDV 94 Query: 99 EAFALSVLSDIAHAGPGYGAGTLHQDKRIMVEFSCPNTNKPLHLGHMRNNILGESVSRIL 158 E V +A A T + + I+VE + N PLHLGH RN+ LG++++R+L Sbjct: 95 EKLGDEVFRLLASGWRPSTART-SRPETIVVEHTSANPIHPLHLGHARNSSLGDALARLL 153 Query: 159 ASQGADVLKVNLINDRGIHICKSMLAYKKFGEGKTPEEV----GKKPDHFVGDFYV---- 210 ++G V + ++D G + L +K G TP E+ G K DH VG Y Sbjct: 154 EARGHRVNRRFYVDDVGRQAVVASLGFKL--SGVTPRELASRMGVKVDHAVGWVYAVTHN 211 Query: 211 --------KFNEWAKEDSTAEEQAR----------------------------RMLRAWE 234 K + +K D AR M+R +E Sbjct: 212 ALETVTARKRGDTSKVDEALSTLARLKERGDREVFDRILEAVGSLDDPEGLVSEMMRKYE 271 Query: 235 DGDAEVRALWEKMNRWAIEGIEQTYRRTGISFDKIYYESDTYLLGRDLVLKGLEDG---V 291 G+ ++L + +EG +T R G+ FD +ESD LL LV K +E+ Sbjct: 272 RGEEPEKSLIRGVVSAVLEGFRETLGRFGVDFDDWDWESD--LLWSGLVNKIIEEARRSP 329 Query: 292 FYQEEDGSVWVDLSEI---------------------GLDKKVLLRSDGTSLYLTQDLGT 330 F ++ +D+ I + +L+RSDGT+LY T+DL Sbjct: 330 FLTTHKDAIALDIPRIVREVLARDPEAASTIKLPRSLEIPPLILVRSDGTTLYTTRDLAY 389 Query: 331 AVARYQDWAFDLLIYVVASEQNYHFRVLFYVLEKLGFSW-AKNLYHLSYGMVNLPEGKMK 389 +V +++ D +I V+ ++Q + L LG+ A N+ H Y +V+LP +M Sbjct: 390 SVYKFRVTGADRVINVIGADQRLPQLQIRLALLGLGYRREALNMMHYDYEIVSLPGRRMS 449 Query: 390 SREGTXXXXXXXXXXXXEMAREEIREKGRVDEVEDIDRTAEAIALGALHYFLLQVSPNKD 449 SR G + E+ + + + I+ TAE IA+GA+ + L++ K Sbjct: 450 SRRGEYVTLDELLEMAKARSVREVESRNPGADRDWIESTAEKIAVGAVRFALVRPGRLKP 509 Query: 450 MIFNPKESLSLTGNTGPYLQYMGARICSMERKADPSLVVPVEEVPTAELVDDASWELIVL 509 + + + L L NT PYLQY AR S+ K + + A L + + EL V Sbjct: 510 ITLDVERILDLKENTAPYLQYTYARASSILEKHGE---IDYLKAHPASLEEGSRRELFVE 566 Query: 510 LSQFPEVVESAAREYNPSLVIGFLYELGKTFSSFYHDNPIITHPNKDTXXXXXXXXXGIR 569 +FP V AA + P + +L L F+S+Y + +I + ++ Sbjct: 567 ALRFPLVSAKAADDLAPEDLASYLLRLADMFNSWYQKDSVIHEEWEGARHAKAALVLLVK 626 Query: 570 QVLENGFRLVNIPFLERM 587 V+ G RL+ + LE+M Sbjct: 627 SVIGEGLRLLGVEPLEKM 644 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 600,858 Number of Sequences: 1700 Number of extensions: 26948 Number of successful extensions: 90 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84 Number of HSP's gapped (non-prelim): 2 length of query: 587 length of database: 492,079 effective HSP length: 82 effective length of query: 505 effective length of database: 352,679 effective search space: 178102895 effective search space used: 178102895 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718711|ref|YP_003874243.1| glutamate synthase [Spirochaeta thermophila DSM 6192] (1510 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,588,984 Number of Sequences: 1700 Number of extensions: 74131 Number of successful extensions: 220 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 220 Number of HSP's gapped (non-prelim): 0 length of query: 1510 length of database: 492,079 effective HSP length: 89 effective length of query: 1421 effective length of database: 340,779 effective search space: 484246959 effective search space used: 484246959 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 98 (42.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718712|ref|YP_003874244.1| hypothetical protein STHERM_c10250 [Spirochaeta thermophila DSM 6192] (491 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601084|ref|NP_147610.1| glutamate synthase [Aeropyrum perni... 142 2e-35 gi|14602052|ref|NP_148598.1| FixC protein [Aeropyrum pernix K1] 42 3e-05 >gi|14601084|ref|NP_147610.1| glutamate synthase [Aeropyrum pernix K1] Length = 337 Score = 142 bits (358), Expect = 2e-35 Identities = 107/352 (30%), Positives = 173/352 (49%), Gaps = 32/352 (9%) Query: 139 PPKVRTGKRVAVVGSGPAGLAAADQLNQAGHQVTVFERDDRPGGLLMYGIPNMKLDKGLV 198 PP TGK V+++G+GPAGL AA L GH+V V++ PGG++M+GIP+ ++ K + Sbjct: 10 PPS--TGKTVSIIGAGPAGLGAAGFLRCRGHEVVVYDMMPEPGGMMMFGIPDDRIPKDNI 67 Query: 199 QRRIDIMVQEGVEIVTNAWVGRDVDPEKLVAEYDAVILAIGSTRPRDLPVPGRDLKGIHF 258 ++ + +V+ G I+ N VGRD+ E ++ DAV++A G+ +PR L PG DL + Sbjct: 68 RKSVRELVEGGARIILNNKVGRDISLEDIIKASDAVLIATGTWKPRRLGAPGEDLPWVLP 127 Query: 259 AMEFLKANTKSLLDSNLSDGTY-----ISAKDKHVIVIGGGDTGNDCIGTSIRHG--CAG 311 A ++ L++ +++ Y + ++V+GGG T D + + + G Sbjct: 128 AADW-------LVEVHMARYGYLPWAKVPKVGGRILVVGGGLTAADAVHVPLTYPEFKDG 180 Query: 312 VTNFXXXXXXXXXXXXXXXWPLYPRMFKVDYGHAEAIAKFGRDPREYCILTKEFIGDARG 371 V Y M K ++ E + K G + E LT+ G Sbjct: 181 VEKVVLSYRRTRD---------YAPMRKNEF---ERLIKMGAEAWE---LTQPIAFYEEG 225 Query: 372 HVKAVRTVRVEWGKDEQGRHVMKEIPGTEEIWKADLVLLALGFLGPEEDVPGILGLERDP 431 K V+ VR+E + GR I G+E + D LLA+G + G G+E +P Sbjct: 226 GRKVVKFVRMELKASDSGRPKPVPIEGSEFEAEFDWALLAIGEVPTPPFNNGCCGIELNP 285 Query: 432 RSNIAAPYGSFLTSHPKVFAAGDARRGQSLVVWAIHEGREAAYEVDRFLMGE 483 I +F+T+ VFA+GD R G SL+ A+ G +AA +V +L G+ Sbjct: 286 DGTIKTD-ENFMTTRKGVFASGDVRHGPSLIGKALKSGLDAAQKVHLYLTGQ 336 >gi|14602052|ref|NP_148598.1| FixC protein [Aeropyrum pernix K1] Length = 436 Score = 42.0 bits (97), Expect = 3e-05 Identities = 21/40 (52%), Positives = 25/40 (62%) Query: 148 VAVVGSGPAGLAAADQLNQAGHQVTVFERDDRPGGLLMYG 187 V VVG GP GLAAA L +AG +V V ER PG ++G Sbjct: 12 VVVVGGGPGGLAAATVLARAGFKVLVLERGREPGAKSLFG 51 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 536,294 Number of Sequences: 1700 Number of extensions: 24641 Number of successful extensions: 93 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89 Number of HSP's gapped (non-prelim): 3 length of query: 491 length of database: 492,079 effective HSP length: 81 effective length of query: 410 effective length of database: 354,379 effective search space: 145295390 effective search space used: 145295390 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718713|ref|YP_003874245.1| 50S ribosomal protein L21 [Spirochaeta thermophila DSM 6192] (103 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.137 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,830 Number of Sequences: 1700 Number of extensions: 3511 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 103 length of database: 492,079 effective HSP length: 64 effective length of query: 39 effective length of database: 383,279 effective search space: 14947881 effective search space used: 14947881 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718714|ref|YP_003874246.1| hypothetical protein STHERM_c10270 [Spirochaeta thermophila DSM 6192] (98 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,649 Number of Sequences: 1700 Number of extensions: 2089 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 98 length of database: 492,079 effective HSP length: 63 effective length of query: 35 effective length of database: 384,979 effective search space: 13474265 effective search space used: 13474265 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718715|ref|YP_003874247.1| 50S ribosomal protein L27 [Spirochaeta thermophila DSM 6192] (85 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.142 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,858 Number of Sequences: 1700 Number of extensions: 4180 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 85 length of database: 492,079 effective HSP length: 54 effective length of query: 31 effective length of database: 400,279 effective search space: 12408649 effective search space used: 12408649 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718716|ref|YP_003874248.1| GTP-binding protein, GTP1/Obg family [Spirochaeta thermophila DSM 6192] (343 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431703|ref|NP_148347.2| GTP-binding protein [Aeropyrum per... 70 8e-14 gi|14601219|ref|NP_147752.1| translation-associated GTPase [Aero... 53 1e-08 gi|118431084|ref|NP_147290.2| GTP-binding protein [Aeropyrum per... 50 8e-08 >gi|118431703|ref|NP_148347.2| GTP-binding protein [Aeropyrum pernix K1] Length = 389 Score = 70.1 bits (170), Expect = 8e-14 Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 15/147 (10%) Query: 174 LVGFPNAGKSTLLSVVTNAHPRIASYPFTTRIPHLGVMYIHETELILADIPGIIEGASRG 233 L+G PN+GKS++L+ +TNA P +A YPFTTR+P G++ + + + D P ++ G+ G Sbjct: 86 LIGPPNSGKSSILAALTNAKPEVADYPFTTRMPRAGMLPYEDIQFQIVDTPPLLPGS--G 143 Query: 234 AGLGLRFLKHIARTAGLAFLIDLADEMWEGAFDILMNELRTYG------QGLAE--KPSI 285 + + R L + + L D D ++ E+ G +GLA K Sbjct: 144 SSVNNRVLGLARNADAIILVFSLDDPNLVETIDAVVREVEDRGIVITRRRGLARIMKSRE 203 Query: 286 IVGTKIDLPG-----TEERLRALRSMH 307 + G +I+ PG TE+ +R L S + Sbjct: 204 VTGVRIEGPGRLTDATEDDVRRLLSQY 230 >gi|14601219|ref|NP_147752.1| translation-associated GTPase [Aeropyrum pernix K1] Length = 410 Score = 53.1 bits (126), Expect = 1e-08 Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 25/109 (22%) Query: 172 IGLVGFPNAGKSTLLSVVTNAHPRIASYPFTTRIPHLGVMYIHE---------------- 215 +GLVG N GKST + T +I + PF T P++GV Y + Sbjct: 8 LGLVGKTNVGKSTFFAAATEVPVKIENRPFVTIEPNVGVGYARKRCAHVELGLPRCDPVN 67 Query: 216 ---------TELILADIPGIIEGASRGAGLGLRFLKHIARTAGLAFLID 255 + L D+ G++ GA RG GLG RFL + + L ++D Sbjct: 68 SLCIEGWRFIPVKLLDVAGLVPGAHRGRGLGNRFLDDVRKADALLLVVD 116 Score = 46.2 bits (108), Expect = 1e-06 Identities = 21/45 (46%), Positives = 30/45 (66%) Query: 282 KPSIIVGTKIDLPGTEERLRALRSMHPGIPVLGISAVQRKGLREL 326 KP++I+ K+D+PG EE + L S +PGIPV+ SA+ LR L Sbjct: 225 KPAVILANKVDVPGAEENVERLGSSYPGIPVVPASALAELMLRRL 269 >gi|118431084|ref|NP_147290.2| GTP-binding protein [Aeropyrum pernix K1] Length = 341 Score = 50.1 bits (118), Expect = 8e-08 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 12/95 (12%) Query: 176 GFPNAGKSTLLSVVTNAHPRIASYPFTTRIPHLGVMYIHETELILADIPGIIEGA----- 230 G P++GKSTL+ V+ A P++A YPFTT+ H+G E + + D PG+++ + Sbjct: 168 GPPSSGKSTLVKNVSRAKPKVADYPFTTKQIHIGHFEAGEGRVQVVDTPGLLDRSLEEMN 227 Query: 231 --SRGAGLGLRFLKHIARTAGLAFLIDLADEMWEG 263 R A LR L + FL D + + G Sbjct: 228 PVERRAAAALRLL-----DGAVLFLFDPRPDAYMG 257 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.140 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 399,334 Number of Sequences: 1700 Number of extensions: 19885 Number of successful extensions: 77 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71 Number of HSP's gapped (non-prelim): 5 length of query: 343 length of database: 492,079 effective HSP length: 78 effective length of query: 265 effective length of database: 359,479 effective search space: 95261935 effective search space used: 95261935 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718717|ref|YP_003874249.1| nicotinate-nucleotide adenylyltransferase [Spirochaeta thermophila DSM 6192] (190 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 195,223 Number of Sequences: 1700 Number of extensions: 8134 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 190 length of database: 492,079 effective HSP length: 72 effective length of query: 118 effective length of database: 369,679 effective search space: 43622122 effective search space used: 43622122 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718718|ref|YP_003874250.1| membrane-bound protein LytR [Spirochaeta thermophila DSM 6192] (396 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 363,665 Number of Sequences: 1700 Number of extensions: 15959 Number of successful extensions: 48 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48 Number of HSP's gapped (non-prelim): 0 length of query: 396 length of database: 492,079 effective HSP length: 79 effective length of query: 317 effective length of database: 357,779 effective search space: 113415943 effective search space used: 113415943 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718719|ref|YP_003874251.1| hypothetical protein STHERM_c10320 [Spirochaeta thermophila DSM 6192] (123 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 128,686 Number of Sequences: 1700 Number of extensions: 5357 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 123 length of database: 492,079 effective HSP length: 67 effective length of query: 56 effective length of database: 378,179 effective search space: 21178024 effective search space used: 21178024 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718720|ref|YP_003874252.1| hypothetical protein STHERM_c10330 [Spirochaeta thermophila DSM 6192] (74 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.142 0.469 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,682 Number of Sequences: 1700 Number of extensions: 86 Number of successful extensions: 0 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 74 length of database: 492,079 effective HSP length: 45 effective length of query: 29 effective length of database: 415,579 effective search space: 12051791 effective search space used: 12051791 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718721|ref|YP_003874253.1| hypothetical protein STHERM_c10340 [Spirochaeta thermophila DSM 6192] (158 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 154,462 Number of Sequences: 1700 Number of extensions: 6572 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 158 length of database: 492,079 effective HSP length: 70 effective length of query: 88 effective length of database: 373,079 effective search space: 32830952 effective search space used: 32830952 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718722|ref|YP_003874254.1| hypothetical protein STHERM_c10350 [Spirochaeta thermophila DSM 6192] (291 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 269,237 Number of Sequences: 1700 Number of extensions: 11667 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 291 length of database: 492,079 effective HSP length: 76 effective length of query: 215 effective length of database: 362,879 effective search space: 78018985 effective search space used: 78018985 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718723|ref|YP_003874255.1| L-aspartate oxidase [Spirochaeta thermophila DSM 6192] (521 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431269|ref|NP_147621.2| succinate dehydrogenase flavoprote... 169 2e-43 >gi|118431269|ref|NP_147621.2| succinate dehydrogenase flavoprotein subunit [Aeropyrum pernix K1] Length = 583 Score = 169 bits (428), Expect = 2e-43 Identities = 157/518 (30%), Positives = 243/518 (46%), Gaps = 68/518 (13%) Query: 44 LESNTYLAQGG---IVYRGEKDSPDLLMRDILEAGAYYNLKEAVRLVAEEGPGMVEEYLI 100 + S++ A+GG ++Y+ E DS L D ++ + ++AV + + P V L+ Sbjct: 46 MRSHSISAEGGTAAVIYKEEGDSYALHAWDTIKGSDFLADQDAVWIFVKLMPEEVR--LL 103 Query: 101 KRAGVPXXXXXXXXXXXKE-GAHSLRRILHVKDETG----KSIQEHFLAYVGSNPHVKFL 155 + G+P + G HS++R L D+TG ++ L Y G + ++ Sbjct: 104 EHWGMPWSRRPDGRLAVRAFGGHSVKRTLFAGDKTGFYEMHTLYNKLLQYDGWERYDEWY 163 Query: 156 SGYTAIDLVTNSHNSLDPEERYRRSRVVGVYLLNP-EGGVDLVFTGAVVLATGGIGNLFL 214 + ++ D E R GV+ +NP +G + L A ++ATGG G L+ Sbjct: 164 ATNIVVE---------DGEFR-------GVFAINPRDGDIYLFKAKAGIIATGGAGRLYN 207 Query: 215 HTSNPPGATGDGVAMASRAGVPVINAHFIQFHPTVLYHRDFKRMLITEAFRGEGARLMNH 274 + TGDG MA RAG+P+ + F QFHPT L +LITE RGEG L+N+ Sbjct: 208 FATYAHTVTGDGWGMALRAGLPLKDPEFFQFHPTGLIP---SGILITEGARGEGGYLLNN 264 Query: 275 SGEYFM---ERIHPLKDLAPRDEVARAIYREM--------EREGTEYVFLDARTLSVD-V 322 GE FM E + ++APRD V+R I RE+ + G EYV LD R L + + Sbjct: 265 RGERFMLRKECAPKMAEIAPRDIVSRCIIREILEGRGFKDDVSGLEYVLLDLRHLGEEKI 324 Query: 323 RTRFPYIYQSCLQ-LGLDISKDPIPVVPAAHYFCGGVK-------VNLDGRTELSGLYAV 374 R P + + ++ G+D ++P+PV P AHY GG++ ++ +GR + GL+A Sbjct: 325 NERLPAVREIAIRYAGIDPVEEPLPVRPVAHYTMGGIRTDSYYRVLDAEGRW-VRGLFAA 383 Query: 375 GECACTGVHGANRLASVSLLEALTFGIRAGKDIAR-------RHSRPTRRLQRSIPDWVF 427 GE A +HGANRL S S E LT G AG A R P R + + Sbjct: 384 GEVAAASIHGANRLGSNSTAECLTSGRIAGMLAAEYALKAEARGVEPERFEKEEAWVYGL 443 Query: 428 PPQEEDVDPVLVKSDLKYLRSLMWHYVGIIRTSKRLNRALADINYLQHRV-ESFYKKAKV 486 +E +K + LR M Y +IR + + R L I L+ E Y + K Sbjct: 444 VKRESGTPSYAIKRE---LRDTMGKYFYVIRDEEGMRRGLLTILKLRKMFREDVYVEDKG 500 Query: 487 R---RDIV---ELRNAVLVARIITQSAVSQQVSVGCHY 518 R D++ E N + A + ++A+++ S G HY Sbjct: 501 RIYNTDLIAALETANMLDAALAVAKAALNRAESRGAHY 538 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 510,537 Number of Sequences: 1700 Number of extensions: 23447 Number of successful extensions: 66 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 1 length of query: 521 length of database: 492,079 effective HSP length: 81 effective length of query: 440 effective length of database: 354,379 effective search space: 155926760 effective search space used: 155926760 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718724|ref|YP_003874256.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Spirochaeta thermophila DSM 6192] (302 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.140 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 281,736 Number of Sequences: 1700 Number of extensions: 11195 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 302 length of database: 492,079 effective HSP length: 76 effective length of query: 226 effective length of database: 362,879 effective search space: 82010654 effective search space used: 82010654 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718725|ref|YP_003874257.1| septation protein spoVG [Spirochaeta thermophila DSM 6192] (100 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,900 Number of Sequences: 1700 Number of extensions: 3361 Number of successful extensions: 5 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 100 length of database: 492,079 effective HSP length: 64 effective length of query: 36 effective length of database: 383,279 effective search space: 13798044 effective search space used: 13798044 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718726|ref|YP_003874258.1| 50S ribosomal protein L25 [Spirochaeta thermophila DSM 6192] (209 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 184,207 Number of Sequences: 1700 Number of extensions: 7956 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 209 length of database: 492,079 effective HSP length: 73 effective length of query: 136 effective length of database: 367,979 effective search space: 50045144 effective search space used: 50045144 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718727|ref|YP_003874259.1| peptidyl-tRNA hydrolase [Spirochaeta thermophila DSM 6192] (164 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 177,320 Number of Sequences: 1700 Number of extensions: 7767 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 164 length of database: 492,079 effective HSP length: 70 effective length of query: 94 effective length of database: 373,079 effective search space: 35069426 effective search space used: 35069426 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718728|ref|YP_003874260.1| tRNA(Ile)-lysidine synthase [Spirochaeta thermophila DSM 6192] (472 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 522,183 Number of Sequences: 1700 Number of extensions: 24961 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 0 length of query: 472 length of database: 492,079 effective HSP length: 80 effective length of query: 392 effective length of database: 356,079 effective search space: 139582968 effective search space used: 139582968 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718729|ref|YP_003874261.1| cell division protease FtsH [Spirochaeta thermophila DSM 6192] (619 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601782|ref|NP_148323.1| proteasome-activating nucleotidase ... 209 2e-55 gi|118431889|ref|NP_148637.2| cell division protein CDC48 [Aerop... 207 5e-55 gi|14601365|ref|NP_147901.1| cell division protein CDC48 [Aeropy... 207 5e-55 gi|14601103|ref|NP_147630.1| hypothetical protein APE_0960 [Aero... 127 6e-31 gi|118430998|ref|NP_147150.2| TATA box-binding protein-interacti... 45 4e-06 gi|118431492|ref|NP_147998.2| replication factor C large subunit... 44 2e-05 >gi|14601782|ref|NP_148323.1| proteasome-activating nucleotidase [Aeropyrum pernix K1] Length = 409 Score = 209 bits (531), Expect = 2e-55 Identities = 113/255 (44%), Positives = 152/255 (59%), Gaps = 1/255 (0%) Query: 156 RARQYQDGKKVMFADVAGQEEAKNELQEVVEF-LKNPHKFTRMGARIPKGVLLVGMPGTG 214 +A + ++ KV F DV G EE E+ E V +KNPH F +G PKGVLL G PGTG Sbjct: 126 KAMEVEERPKVFFKDVGGLEEQIREIYEAVVLPIKNPHLFRELGIDPPKGVLLHGPPGTG 185 Query: 215 KTLLARAVAGEAGVPFFHMSGSDFVEMFVGVGAARVRDLFDQGRKHAPCIIFIDELDXXX 274 KTLLA+AVAGE F + GS+ V F+G GA VR++F R+ AP I+FIDE+D Sbjct: 186 KTLLAKAVAGETEATFIRVVGSELVNKFIGEGARLVREIFRLAREKAPSILFIDEIDAIA 245 Query: 275 XXXXXXXXXXHDEREQTLNQLLVEMDGFESKEGVIVLAATNRPDVLDPALLRPGRFDRQV 334 E ++T+ QLL E+DGF+ + V V+AATNR D++DPA+LRPGRFDR + Sbjct: 246 SKRVDIGTSGDREVQRTMLQLLAELDGFDPLDNVKVIAATNRLDLIDPAVLRPGRFDRII 305 Query: 335 VVDMPDVKEREAILRIHARKVPLGEDVDFERVARGTAGTSGADXXXXXXXXXXXXXRKNK 394 V +P ++ R IL IH RK + DVD E +A+ T G SGAD R+ Sbjct: 306 EVPLPSLRGRLEILGIHTRKAKMAPDVDLEAIAKLTEGFSGADLKAVVVEAGYNAIRRGS 365 Query: 395 GVVEMEDFEEARDKI 409 V+ M+D +A +K+ Sbjct: 366 RVITMDDMIKAVEKV 380 >gi|118431889|ref|NP_148637.2| cell division protein CDC48 [Aeropyrum pernix K1] Length = 737 Score = 207 bits (528), Expect = 5e-55 Identities = 112/248 (45%), Positives = 150/248 (60%), Gaps = 5/248 (2%) Query: 165 KVMFADVAGQEEAKNELQEVVEF-LKNPHKFTRMGARIPKGVLLVGMPGTGKTLLARAVA 223 +V ++D+ G E+ K EL+EVVE+ LK+P FTRMG R P+GVLL G PGTGKTLLA+AVA Sbjct: 457 EVRWSDIGGLEDVKQELREVVEWPLKHPEAFTRMGIRPPRGVLLFGPPGTGKTLLAKAVA 516 Query: 224 GEAGVPFFHMSGSDFVEMFVGVGAARVRDLFDQGRKHAPCIIFIDELDXXXXXXXXXXXX 283 E+G F + G + + +VG +R++F + R+HAP ++F DE+D Sbjct: 517 TESGANFIAVRGPEILSKWVGESERAIREIFAKARQHAPAVVFFDEIDAIAPVRGTDVGT 576 Query: 284 XHDEREQTLNQLLVEMDGFESKEGVIVLAATNRPDVLDPALLRPGRFDRQVVVDMPDVKE 343 ER ++QLL E+DG V+V+AATNRPD++DPAL+RPGR ++ + V PD Sbjct: 577 RVTER--IVSQLLTEIDGVSDLHDVVVIAATNRPDMVDPALMRPGRLEKMIYVPPPDFSS 634 Query: 344 REAILRIHARKVPLGEDVDFERVARGTAGTSGADXXXXXXXXXXXXXRK--NKGVVEMED 401 R ILRIH RKVPL EDVD +AR T G +GAD R+ N V M Sbjct: 635 RLEILRIHTRKVPLAEDVDLAEIARRTEGYTGADIEALVREASLAALREDINAAEVSMRH 694 Query: 402 FEEARDKI 409 FE A K+ Sbjct: 695 FEVALKKV 702 Score = 189 bits (481), Expect = 1e-49 Identities = 108/273 (39%), Positives = 156/273 (57%), Gaps = 21/273 (7%) Query: 165 KVMFADVAGQEEAKNELQEVVEF-LKNPHKFTRMGARIPKGVLLVGMPGTGKTLLARAVA 223 KV + D+ G +E +++E+VE L++P F R+G PKG+LL G PGTGKTLLA+AVA Sbjct: 184 KVTYEDIGGLKEVIEKVREMVELPLRHPEIFKRLGIEPPKGILLYGPPGTGKTLLAKAVA 243 Query: 224 GEAGVPFFHMSGSDFVEMFVGVGAARVRDLFDQGRKHAPCIIFIDELDXXXXXXXXXXXX 283 EA F ++G + + + G R+R++F++ +K+AP IIFIDE+D Sbjct: 244 NEADAYFISINGPEIMSKYYGESEQRLREIFEEAKKNAPSIIFIDEIDAIAPKRDEVVG- 302 Query: 284 XHDEREQTLNQLLVEMDGFESKEGVIVLAATNRPDVLDPALLRPGRFDRQVVVDMPDVKE 343 + + + QLL MDG E++ VIV+AATNRP+ +DPAL RPGRFDR++ V +PD Sbjct: 303 --EVERRVVAQLLALMDGLEARGNVIVIAATNRPNAIDPALRRPGRFDREIEVPLPDKHG 360 Query: 344 REAILRIHARKVPLGEDVDFERVARGTAGTSGADXXXXXXXXXXXXXRK----------- 392 R IL+IH R +PL ED+D E++A T G +GAD R+ Sbjct: 361 RLEILQIHTRHMPLAEDMDLEKLAEMTKGFTGADLAALAREAAMYALRRYLPEIDLDQES 420 Query: 393 ------NKGVVEMEDFEEARDKILMGVARKSRV 419 K VV MEDF +A +I R+ ++ Sbjct: 421 IPVEVLEKMVVTMEDFLKALREITPSGLREIQI 453 >gi|14601365|ref|NP_147901.1| cell division protein CDC48 [Aeropyrum pernix K1] Length = 726 Score = 207 bits (528), Expect = 5e-55 Identities = 112/253 (44%), Positives = 154/253 (60%), Gaps = 4/253 (1%) Query: 160 YQDGKKVMFADVAGQEEAKNELQEVVEF-LKNPHKFTRMGARIPKGVLLVGMPGTGKTLL 218 Y + +V ++D+ G EEAK L+E VE+ LK+P F +MG R P+GVLL G PGTGKTLL Sbjct: 450 YVEVPEVRWSDIGGLEEAKQALREAVEWPLKHPEIFEKMGIRPPRGVLLFGPPGTGKTLL 509 Query: 219 ARAVAGEAGVPFFHMSGSDFVEMFVGVGAARVRDLFDQGRKHAPCIIFIDELDXXXXXXX 278 A+AVA E+G F + G + + +VG +R +F++ R+ AP ++F DE+D Sbjct: 510 AKAVATESGANFIAVRGPEILSKWVGESERAIRKIFERARQAAPAVVFFDEIDAIAPARG 569 Query: 279 XXXXXXHDEREQTLNQLLVEMDGFESKEGVIVLAATNRPDVLDPALLRPGRFDRQVVVDM 338 ++ +NQ+L EMDG + V+V+ ATNRPD+LDPALLRPGRFDR + V Sbjct: 570 ARFDTS-GVTDRIVNQMLAEMDGIQPLSNVVVIGATNRPDILDPALLRPGRFDRLIYVPP 628 Query: 339 PDVKEREAILRIHARKVPLGEDVDFERVARGTAGTSGADXXXXXXXXXXXXXRK--NKGV 396 PD + R+ I +IH +KVPLGEDVD E++A T G +GAD R+ G Sbjct: 629 PDKEARKEIFKIHTKKVPLGEDVDLEKLAEMTEGYTGADIEAVVREAVMAKLREKLEVGK 688 Query: 397 VEMEDFEEARDKI 409 VEM F EA K+ Sbjct: 689 VEMRHFLEALKKV 701 Score = 184 bits (466), Expect = 7e-48 Identities = 94/229 (41%), Positives = 137/229 (59%), Gaps = 4/229 (1%) Query: 165 KVMFADVAGQEEAKNELQEVVEF-LKNPHKFTRMGARIPKGVLLVGMPGTGKTLLARAVA 223 KV + D+ EEAK ++E+VE +K+P F +G PKG+LL G PGTGKTLLA+A+A Sbjct: 180 KVTWEDIGDLEEAKERIREIVELPMKHPEIFKHLGIEPPKGILLYGPPGTGKTLLAKALA 239 Query: 224 GEAGVPFFHMSGSDFVEMFVGVGAARVRDLFDQGRKHAPCIIFIDELDXXXXXXXXXXXX 283 E G F ++G + + + G R+R++F + ++AP IIFIDE+D Sbjct: 240 NEIGAYFISINGPEIMSKYYGESEQRLREIFKEAEENAPSIIFIDEIDAIAPKREEVTG- 298 Query: 284 XHDEREQTLNQLLVEMDGFESKEGVIVLAATNRPDVLDPALLRPGRFDRQVVVDMPDVKE 343 + ++ + QLL MDG + + VIV+ ATNRPD +DPAL RPGRFDR++ + PD + Sbjct: 299 --EVEKRVVAQLLTLMDGLKERGRVIVIGATNRPDAIDPALRRPGRFDREIEIRPPDKRA 356 Query: 344 REAILRIHARKVPLGEDVDFERVARGTAGTSGADXXXXXXXXXXXXXRK 392 R IL++H R +PL EDVD +++A T G +GAD R+ Sbjct: 357 RAEILKVHTRNMPLAEDVDLDKLAEMTHGYTGADLAALAKEAAMAALRR 405 >gi|14601103|ref|NP_147630.1| hypothetical protein APE_0960 [Aeropyrum pernix K1] Length = 384 Score = 127 bits (320), Expect = 6e-31 Identities = 91/271 (33%), Positives = 137/271 (50%), Gaps = 28/271 (10%) Query: 153 GKSRARQY--QDGKKVMFADVAGQEEAKNELQEVVEF-LKNPHKFTRMGARIPKGVLLVG 209 G+ A ++ ++ V F D+AG EEAK ++E + F +K P F P+G+LL G Sbjct: 96 GEDEAPEFVLKEKPSVTFDDIAGLEEAKKAIREAIVFPVKRPDLFP---LGWPRGILLYG 152 Query: 210 MPGTGKTLLARAVAGEAGVPFFHMSGSDFVEMFVGVGAARVRDLFDQGRKHA----PCII 265 PGTGKT+LA AVA E F ++ ++ + ++G G V+ LF+ R A P +I Sbjct: 153 PPGTGKTMLASAVANEIDGEFLYVDAANIMSKWLGEGEKNVKKLFNYARNKAKEGKPVVI 212 Query: 266 FIDELDXXXXXXXXXXXXXHDEREQTLNQLLVEMDGFESKEG---VIVLAATNRPDVLDP 322 FIDE+D + NQ L EMDG + K V V+AATN+P LD Sbjct: 213 FIDEVDALLGVHGSEVGG----EVRVRNQFLKEMDGIQDKGSRLHVYVIAATNKPWKLDE 268 Query: 323 ALLRPGRFDRQVVVDMPDVKEREAILRIHARKVPLGEDVDFERVARGTAGTSGADXXXXX 382 +R RF +++ V +P + R+ +L ++ RK+ L DVD +R+A G +G+D Sbjct: 269 PFIR--RFQKRIYVPLPSRETRKRMLEMYTRKLRLAGDVDLDRLAEMLEGYTGSDIADIV 326 Query: 383 XXXXXXXXRK--NKGVVE-------MEDFEE 404 R+ KG V+ M DF+E Sbjct: 327 REAYMATVRELFEKGKVDGEPRPITMSDFQE 357 >gi|118430998|ref|NP_147150.2| TATA box-binding protein-interacting protein TIP49 [Aeropyrum pernix K1] Length = 449 Score = 45.4 bits (106), Expect = 4e-06 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 9/69 (13%) Query: 171 VAGQEEAKNELQEVVEFLKNPHKFTRMGARIPKGVLLVGMPGTGKTLLARAVAGEAG--V 228 + GQEEA+ +VE ++ R+G R G+L+VG PGTGKT LA A+A E G Sbjct: 39 LVGQEEAREAAGVIVEMVREG----RLGGR---GILIVGPPGTGKTALAIAIARELGEDT 91 Query: 229 PFFHMSGSD 237 PF ++ + Sbjct: 92 PFVALNAGE 100 >gi|118431492|ref|NP_147998.2| replication factor C large subunit [Aeropyrum pernix K1] Length = 479 Score = 43.5 bits (101), Expect = 2e-05 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 17/107 (15%) Query: 170 DVAGQEEAKNELQEVVEFLKNPHKFTRMGARIPKGVLLVGMPGTGKTLLARAVAGEAGVP 229 DV Q++AK L + K + A LL G PG GKT L A+A E + Sbjct: 23 DVVNQDQAKKILVPWFKAWLEGRKPDKRAA------LLYGPPGVGKTSLVEAIASEFNLE 76 Query: 230 FFHMSGSDF-----VEMFVGVGAARVRDLFDQGRKHAPCIIFIDELD 271 ++ SD+ +E VG A+R R +F +G +I +DE+D Sbjct: 77 MIELNASDYRRRSDIERIVG-AASRKRSMFKRG-----VVILLDEVD 117 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 560,877 Number of Sequences: 1700 Number of extensions: 24195 Number of successful extensions: 145 Number of sequences better than 1.0e-04: 6 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 128 Number of HSP's gapped (non-prelim): 8 length of query: 619 length of database: 492,079 effective HSP length: 82 effective length of query: 537 effective length of database: 352,679 effective search space: 189388623 effective search space used: 189388623 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718730|ref|YP_003874262.1| hypothetical protein STHERM_c10440 [Spirochaeta thermophila DSM 6192] (431 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 474,830 Number of Sequences: 1700 Number of extensions: 22595 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 431 length of database: 492,079 effective HSP length: 79 effective length of query: 352 effective length of database: 357,779 effective search space: 125938208 effective search space used: 125938208 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718731|ref|YP_003874263.1| trypsin domain/PDZ domain-containing protein [Spirochaeta thermophila DSM 6192] (590 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 665,212 Number of Sequences: 1700 Number of extensions: 33127 Number of successful extensions: 93 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93 Number of HSP's gapped (non-prelim): 0 length of query: 590 length of database: 492,079 effective HSP length: 82 effective length of query: 508 effective length of database: 352,679 effective search space: 179160932 effective search space used: 179160932 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718732|ref|YP_003874264.1| hypothetical protein STHERM_c10460 [Spirochaeta thermophila DSM 6192] (159 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.139 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 150,390 Number of Sequences: 1700 Number of extensions: 5444 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 159 length of database: 492,079 effective HSP length: 70 effective length of query: 89 effective length of database: 373,079 effective search space: 33204031 effective search space used: 33204031 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718733|ref|YP_003874265.1| hypothetical protein STHERM_c10470 [Spirochaeta thermophila DSM 6192] (90 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.142 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,692 Number of Sequences: 1700 Number of extensions: 3556 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 90 length of database: 492,079 effective HSP length: 59 effective length of query: 31 effective length of database: 391,779 effective search space: 12145149 effective search space used: 12145149 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718734|ref|YP_003874266.1| ribonuclease HII [Spirochaeta thermophila DSM 6192] (193 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431079|ref|NP_147280.2| ribonuclease HII [Aeropyrum pernix... 52 1e-08 >gi|118431079|ref|NP_147280.2| ribonuclease HII [Aeropyrum pernix K1] Length = 225 Score = 52.0 bits (123), Expect = 1e-08 Identities = 52/164 (31%), Positives = 72/164 (43%), Gaps = 16/164 (9%) Query: 1 MDTVCGIDEVGRXXXXXXXXXXXXXXXXXX-----SLPGLKDSKKLSPEERERLFPLILE 55 M V G+DE GR SL G++DSK+LSP R L+ I Sbjct: 1 MGIVVGVDEAGRGSLVGDLVVAGFAVEEARLGELQSL-GVRDSKQLSPAARVELYREI-S 58 Query: 56 XXXXXXXXXXXPHEVDRFNIHNATLKAMERAYEMLIQKLS--PSLVPTEVVIDGRHAPPS 113 P E+D NI+ KA+E ++ L PSLV + D + + Sbjct: 59 GVGFFTVEAIRPWEIDGENINILVTKAVEEIVSRIVSYLGVHPSLVVVDKYGDVQGLRLA 118 Query: 114 ITHA----RAVV---KADSFVPEVMAASIVAKVFRDEWMKIYHR 150 +T R+++ KADS P V AASIVAKV RD +++ R Sbjct: 119 LTRLGIEPRSILVEEKADSRYPVVSAASIVAKVVRDARLQVLRR 162 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 156,046 Number of Sequences: 1700 Number of extensions: 5586 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 1 length of query: 193 length of database: 492,079 effective HSP length: 72 effective length of query: 121 effective length of database: 369,679 effective search space: 44731159 effective search space used: 44731159 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718735|ref|YP_003874267.1| chromosome partition protein SmC [Spirochaeta thermophila DSM 6192] (927 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad5... 96 3e-21 gi|14601261|ref|NP_147796.1| surface layer protein [Aeropyrum pe... 63 3e-11 gi|14600971|ref|NP_147497.1| hypothetical protein APE_0790 [Aero... 55 1e-08 gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aero... 51 1e-07 >gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1] Length = 919 Score = 96.3 bits (238), Expect = 3e-21 Identities = 215/1004 (21%), Positives = 397/1004 (39%), Gaps = 194/1004 (19%) Query: 2 ILKAVELFGFKSFGEKTRIEFREGVTAIVGPNGCGKSNIVDAIKWVLGEQSTKTLRTSSM 61 +LK +EL S T I+FREG TAIVG NG GKS I++AI + + R+S + Sbjct: 3 VLKRLELRNIMSHFN-TSIDFREGFTAIVGRNGAGKSTILEAILFSITPHQAPR-RSSMI 60 Query: 62 EEVIFNGTEDRKPLNVAEVTLILSNNEGHLPLDFDEIAIRRRVYRSG---ESEYAINNAP 118 E G E+ L L ++EG L + +R ++ R G +E AI Sbjct: 61 SENSSRG----------EIYLALQSSEGRL------LELRNKLIRRGGGTNTEAAIITLE 104 Query: 119 VRLRDVKELFFDTGIGK----------SAYS----IMEQGKIDQI--LSSRPEDRRQIFE 162 R K + I K ++Y I+ QG + + + S P++ R + + Sbjct: 105 GRRIASKPTGYKEEIHKILGLRGLPNPASYIEKAIIISQGGLQTLAEILSEPKELRDLLD 164 Query: 163 EAAGITRYRQR--------------------------EVEANQKLLRTEENMVHVESVLR 196 A G +Q +++ LR E ++ V+ +R Sbjct: 165 AALGYALLKQAISNIGDVVLGVSPDGSPVKLGSKSITRLQSGYMTLRNE--VLGVDREIR 222 Query: 197 EVEKRYHALKAQAEKVERY--------RALSEEIFQIEIKQSLLKYRRIEKAXXXXXXXX 248 E KR L+ + E++ER +AL EI ++E + +L + Sbjct: 223 EASKRLEELEREREELERRARDLESEAKALQSEIGKLETMEEMLV--NVTSMIRSERSKL 280 Query: 249 XXXXXXXXXXXXQIHRLNDSVED--SLDTMGSLEHDLARYQRELYGLEVKRHSLSSQMTL 306 +I ++D + L SL H++A R L S++ Sbjct: 281 DTINTRLRYAESKISSIDDLEKRRAELRAKASLAHEVAELAR-----------LQSRLDK 329 Query: 307 LSEQISEIEGKISTDRVREQHLRDRLLRIESSIVXXXXXXXXXXXXXXHIQSQIQEWEES 366 L + I D V + + RL IES+ ++++ E S Sbjct: 330 LGRDLEMIR-----DAVEKLEVSRRLKEIESA--------------RREAENRLLEARSS 370 Query: 367 IAVSERQIIAFEQEIADSEGMIAXXXXXXXXXXXXX---ANLTEEIVKELDEGLKRSNFS 423 I +R+ + + ++ + E +++ LD + ++ Sbjct: 371 IKEEQRRYTLLDYRVTRGRSIVTNIRRVLSECRSKDLCGSEKPESVLERLDAVI--NDLE 428 Query: 424 AKERVTLSHALRESLDHLLARIRHRREILQDFKRLGNPD---------PPFEEWLEEMAR 474 +K R AL + L A R + L + G PP E +AR Sbjct: 429 SKAR-----ALDQEASALEAEARRLVQALSMLEESGGSARCPVCGAELPPGRA--EAIAR 481 Query: 475 TVEQARDLYAAYLATEPSFLEAFTAPEGIITKKRAIDNLLEDVTKKIQSSRERIAELQTR 534 + A + EA K RA + L+D ++I+ R+ +L+ Sbjct: 482 HYRHEAERLRK--AAKEKAAEA--------EKARAEASRLQDKRRRIELLLSRLNQLEEG 531 Query: 535 IREVRTRN-EQRRKSLEDLRLTSTRIATQAEALRETVNALLRDKEETLSLINQIQKEV-D 592 +RE+ + E K+ + LR+ R+ EE L N ++++V + Sbjct: 532 LRELGFQTPEDLAKAEQKLRMLRERL------------------EELRKLENSLEEKVRN 573 Query: 593 LSNRRLDTVKASLHALEREQKALLQEEASCREKIVEIERNIKEKNFAISSHENEIKQKMG 652 LS + +A ALE Q+ ++EE REK+ + K+ + S ++ ++G Sbjct: 574 LSREEVALREAKTRALEVLQRLGIKEE-EAREKLKTLSSESKKLERMLVSKAEDLATRLG 632 Query: 653 --ELSRLQEDVERLQVEVARYEEEIKALETYFKDQHGRTLRE---FLQMEVQENPGDLAR 707 L + +E+ + + ++E+ A+E ++ R L+E L+ E ++ L Sbjct: 633 ITAYRSLDDLLEKAREALEGVDKELSAIERRLEE--ARRLKEEAAKLKWEAEQVMKRLEE 690 Query: 708 VLAEKREERRRLGNVNFMAAEEFKDVKDRYEFLVSQLSDLNKAKENLTTVLQEIR----- 762 + AE+++ R+ + + + A K+V++ L ++S +++ L T ++E++ Sbjct: 691 LEAEEKKLRKEVSRKSEIEA-RLKEVQNTLAELDDRISRIDREMGELQTRIREMKSRKAS 749 Query: 763 -RESRELFL--ATYEKIKVNFHQV-FRRLFGGGRAELK-LLDPSDPLESGIEIFAQPPGK 817 E+ +L+L A +I ++ +RRL E+ +L + +G+EI + + Sbjct: 750 GEEALKLYLPAAASRRIMEEIGEIAYRRLLAVLEDEMNDILSRFNLDVAGVEI-REKAAR 808 Query: 818 KLE-----------HIGLLSGGERSLTAVALLFAIYMVKPSP--FCILDEIDAPLDENNI 864 ++E + +SGGER++ A++ + A+ F LDE A LDE+ Sbjct: 809 EIEVKAIGGNGAYRPLEAVSGGERTVLALSFVLALNKAVGGKLGFLALDEPTANLDEDRR 868 Query: 865 GRFVELLREFSERS---QFIVITHNKKTITGADNLLGVTMEESG 905 VE+LR S Q +V+TH++ AD + VT + G Sbjct: 869 RSLVEVLRGISVEGLVRQLVVVTHHEDVRDYADTICLVTRTQQG 912 >gi|14601261|ref|NP_147796.1| surface layer protein [Aeropyrum pernix K1] Length = 533 Score = 63.2 bits (152), Expect = 3e-11 Identities = 77/324 (23%), Positives = 142/324 (43%), Gaps = 33/324 (10%) Query: 365 ESIAVSERQIIAFEQEIADSEGMIAXXXXXXXXXXXXXANLTEE---IVKELDEGLKRSN 421 +SI E + A E E+AD I EE +V++ E L + Sbjct: 201 QSIYGGEAVLAAAEVEVADGVATIGGAREIAEEVASAYVAPLEERLSLVEQAVEDLGLAL 260 Query: 422 FSAKERVTLSHALRESLDHLLARIRHRREILQDFKRLGNPDPPFEEWLEEMARTVEQARD 481 S +ERV E L L+ + R L+D R+ + E LE + ++E D Sbjct: 261 DSLEERVGDLEFAVEDLTLQLSSLDSRVGALED--RVAD----IEGRLEAVEGSLE---D 311 Query: 482 LYAAYLATEPSFLEAFTAPEGIITKKRAIDNLLEDVTKKIQSSRERIAELQTRIREVRTR 541 L A A + + ++ + +ED+ ++ S +R+++ + I + T Sbjct: 312 LSGAVDAMSQQL-------QALAEDLESLSSRVEDLEARVGSVEDRLSQAEEDIDSLTTS 364 Query: 542 NEQRRKSLEDLRLTSTRIATQAEALRETVNALLRDKEETLSLINQIQKEVDLSNRRLDTV 601 + R LEDL STR+A +A+A E +N L ++ S + Q+Q+ RL T Sbjct: 365 LDSLRTELEDL---STRLA-EAQASLEDLNTRL---DQVASTLQQLQQ-------RLATA 410 Query: 602 KASLHALEREQKALLQEEASCREKIVEIERNIKEKNFAISSHENEIKQKMGELSRLQEDV 661 + SL AL + +L E + ++ IVEI+R + + + + E++ +L + +E Sbjct: 411 EESLQALTEDLASLQAEVETLQQSIVEIDRRLGQLRSTVDAVRLEVESLGEKLVQAEEKN 470 Query: 662 ERLQVEVARYEEEIKALETYFKDQ 685 +R + ++ +I+ L T ++ Sbjct: 471 QRQDASIEDFQSQIQELRTQLDEK 494 >gi|14600971|ref|NP_147497.1| hypothetical protein APE_0790 [Aeropyrum pernix K1] Length = 297 Score = 54.7 bits (130), Expect = 1e-08 Identities = 55/255 (21%), Positives = 116/255 (45%), Gaps = 24/255 (9%) Query: 501 EGIITKKRAIDNLLEDVTKKIQSSRERIAELQTRIREVRTRNEQRRKSLEDLRLTSTRIA 560 E I+ K L+ +V + R+ E + + ++R+ E+R+K L++L A Sbjct: 25 EEIVRLKEERRKLINEVKALREERRKASREKREYVEKLRSLREERKKILDEL-------A 77 Query: 561 TQAEALRETVNALLRDKEETLSLINQIQKE----VDLSNRRLDTVKASLHALER------ 610 E ++T + L+ +++ L ++KE +S +RL L ++ Sbjct: 78 QLKEERKKTRDELVIKRDQLRVLRGLLEKEGGRLAKISLKRLQRRLQELEMMQMTRVLRP 137 Query: 611 EQKALLQEEASCREKIVEIERNIKEKNFAISSHENEIKQKMGELSRLQEDVERLQVEVAR 670 E++ L EE S E+++E R KE+ + + E+K + +L L + ++ L+ + Sbjct: 138 EEEKRLVEEISRLEELIERVRKAKEQALSTMELQAEVKALVIKLKDLNQRIDELRQQAGS 197 Query: 671 YEEEIKALETYFKDQHGRTLREFLQME-----VQENPGDLARVLAEKREERRRLGNVNFM 725 +EE+ L + ++ + R + ++E + E ++ + A+ RE RL ++ Sbjct: 198 VKEELATLSSKIEEYNERIKKLSEEIEKRSTRIDELSKEIDNLYAKYREVMTRLKDIRIA 257 Query: 726 AAE--EFKDVKDRYE 738 A E +V+ R E Sbjct: 258 MARGMELSEVEKRRE 272 Score = 45.8 bits (107), Expect = 5e-06 Identities = 62/272 (22%), Positives = 120/272 (44%), Gaps = 32/272 (11%) Query: 528 IAELQTRIREVRTRNEQRRKSLEDLRLTSTRIATQAEALRETVNALLRDKEETLSLINQI 587 IAE + E+ E+ ++ + L+ ++ + +ALRE R+K E + + + Sbjct: 6 IAEFKKEEEELLKTIEELKEEIVRLKEERRKLINEVKALREERRKASREKREYVEKLRSL 65 Query: 588 QKEVDLSNRRLDTVKASLH------ALEREQ----KALLQEEASCREKI--VEIERNIKE 635 ++E L +K ++R+Q + LL++E KI ++R ++E Sbjct: 66 REERKKILDELAQLKEERKKTRDELVIKRDQLRVLRGLLEKEGGRLAKISLKRLQRRLQE 125 Query: 636 KNFAISS---HENEIKQKMGELSRLQEDVERLQ------VEVARYEEEIKALETYFKDQH 686 + E K+ + E+SRL+E +ER++ + + E+KAL KD + Sbjct: 126 LEMMQMTRVLRPEEEKRLVEEISRLEELIERVRKAKEQALSTMELQAEVKALVIKLKDLN 185 Query: 687 GRTLREFLQM--EVQENPGDLARVLAEKREERRRLGNVNFMAAEEFKDVKDRYEFLVSQL 744 R + E Q V+E L+ + E E ++L +EE + R + L ++ Sbjct: 186 QR-IDELRQQAGSVKEELATLSSKIEEYNERIKKL-------SEEIEKRSTRIDELSKEI 237 Query: 745 SDLNKAKENLTTVLQEIR-RESRELFLATYEK 775 +L + T L++IR +R + L+ EK Sbjct: 238 DNLYAKYREVMTRLKDIRIAMARGMELSEVEK 269 >gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aeropyrum pernix K1] Length = 791 Score = 51.2 bits (121), Expect = 1e-07 Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 34/259 (13%) Query: 527 RIAELQTRIREVRTRNEQRRKSLEDLRLTSTRIATQAEALRETVNAL---LRDKEETLSL 583 RIAE + +I + E+ L+ + AE RE + L E L L Sbjct: 464 RIAEAKEKIAQAEAALEKADSKLDTAEAILEVVEEYAERAREAIEEAEEALAKAEAKLQL 523 Query: 584 INQIQ--KEVDLSNRRLDTVKASLHALER--------EQKALLQEEASCREKIVEI-ERN 632 Q+ + V+ + RL+ K L A + E L +E AS E+ E+ E+ Sbjct: 524 AAQLSGSEAVEEALNRLEEAKEKLEAAKEAYSNGRYGEAIVLAEEAASIAEEAKELAEKA 583 Query: 633 IKEKNFAISSHENEIKQKMGELSRLQEDVERLQVEVARYEEEIKALETYFKDQHGRTLRE 692 I+ A+S N++++ + + LQE++E ++A K + L E Sbjct: 584 IEAAQEAVSEVLNQVEELLDRVKDLQEEIE----DIAE------------KAREAGVLTE 627 Query: 693 FLQMEVQENPG--DLARVLAEKREERRRLGNVNFMAAEEFKDVKDRYEFLVSQLSDLNKA 750 +Q + E G D AR L E+ + + G+++ A ++ + +D E VS + D+ Sbjct: 628 EIQAAIDEVLGKLDQARSLLEEADSLAKEGDID-GARQKLGEARDVIEEAVSMVRDIRSM 686 Query: 751 KEN-LTTVLQEIRRESREL 768 E + ++ E+RR EL Sbjct: 687 VEQAIGDLIDELRRLIEEL 705 Score = 48.1 bits (113), Expect = 9e-07 Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 17/272 (6%) Query: 357 QSQIQEWEESIAVSERQIIAFEQEIADSEGMIAXXXXXXXXXXXXXANLTEEIVKELDEG 416 + +I E +E IA +E + + ++ +E ++ A E ++E +E Sbjct: 462 EGRIAEAKEKIAQAEAALEKADSKLDTAEAILEVVEEY--------AERAREAIEEAEEA 513 Query: 417 LKRSNFSAKERVTLSHALRESLDHLLARIRHRREILQDFKRLGNPDPPFEEWL--EEMAR 474 L ++ + LS + E+++ L R+ +E L+ K + E + EE A Sbjct: 514 LAKAEAKLQLAAQLSGS--EAVEEALNRLEEAKEKLEAAKEAYSNGRYGEAIVLAEEAAS 571 Query: 475 TVEQARDLYA-AYLATEPSFLEAFTAPEGIITKKRAIDNLLEDVTKKIQSSRERIAELQT 533 E+A++L A A + + E E ++ + + + +ED+ +K + + E+Q Sbjct: 572 IAEEAKELAEKAIEAAQEAVSEVLNQVEELLDRVKDLQEEIEDIAEKAREAGVLTEEIQA 631 Query: 534 RIREVRTRNEQRRKSLEDLRLTSTRIATQAEALRETVNALLRDKEETLSLINQIQKEVDL 593 I EV + +Q R LE+ S + R+ + EE +S++ I+ V+ Sbjct: 632 AIDEVLGKLDQARSLLEE--ADSLAKEGDIDGARQKLGEARDVIEEAVSMVRDIRSMVEQ 689 Query: 594 S-NRRLDTVKASLHALEREQKALLQEEASCRE 624 + +D ++ + L RE+ A L EA+ E Sbjct: 690 AIGDLIDELRRLIEEL-REKAAELNTEAAMLE 720 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.133 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 778,870 Number of Sequences: 1700 Number of extensions: 32296 Number of successful extensions: 259 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 206 Number of HSP's gapped (non-prelim): 27 length of query: 927 length of database: 492,079 effective HSP length: 85 effective length of query: 842 effective length of database: 347,579 effective search space: 292661518 effective search space used: 292661518 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718736|ref|YP_003874268.1| hypothetical protein STHERM_c10510 [Spirochaeta thermophila DSM 6192] (150 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.139 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,363 Number of Sequences: 1700 Number of extensions: 1135 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 150 length of database: 492,079 effective HSP length: 69 effective length of query: 81 effective length of database: 374,779 effective search space: 30357099 effective search space used: 30357099 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718737|ref|YP_003874269.1| hypothetical protein STHERM_c10500 [Spirochaeta thermophila DSM 6192] (371 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 284,078 Number of Sequences: 1700 Number of extensions: 11580 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 0 length of query: 371 length of database: 492,079 effective HSP length: 78 effective length of query: 293 effective length of database: 359,479 effective search space: 105327347 effective search space used: 105327347 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718738|ref|YP_003874270.1| hypothetical protein STHERM_c10520 [Spirochaeta thermophila DSM 6192] (443 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601593|ref|NP_148133.1| signal recognition 54 kDa protein [... 239 1e-64 gi|118431321|ref|NP_147702.2| signal recognition particle protei... 157 6e-40 >gi|14601593|ref|NP_148133.1| signal recognition 54 kDa protein [Aeropyrum pernix K1] Length = 441 Score = 239 bits (610), Expect = 1e-64 Identities = 145/403 (35%), Positives = 225/403 (55%), Gaps = 8/403 (1%) Query: 25 KNIEEAVEQIKYALLEADVHVRVVRRFVNQTIQEATGERVLKSVTPGQQFVKILYDKLVS 84 K ++ V+ ++ L++ADV+V++V + + A E VT +KI+Y++LV Sbjct: 21 KAVDAFVKDLQRELIKADVNVKLVLNVTRRIKERALKEEPPPGVTRRDWMIKIVYEELVK 80 Query: 85 FLGDERQDLALKGPDTLSIILLAGLQGSGXXXXXXXXXXXXXXXGRRPLLVAADLARPAA 144 G + Q+ + P T I+LL G+QGSG G + LV++D RP A Sbjct: 81 LFGGD-QEPQVDPPKTPWIVLLVGVQGSGKTTTAGKLAYYYVRRGYKVGLVSSDTHRPGA 139 Query: 145 IDQLETLGATIDVPVYTDRSLKDPRTLVKRALSHAKRQAVDTLIVDTAGRHQVDRE--LM 202 +QL+ L Y +R DP + +R L + + +IVDTAGRH E L+ Sbjct: 140 YEQLKRLAEEAGAMFYGERE-GDPAEIARRGLEDLLSRGAEIVIVDTAGRHGHGEEARLL 198 Query: 203 DELSRLVRDLSPDETLLVADAMTGQTAVDVAKAFNEAVGITGVVLTKFDSDTRGGAALSI 262 DE+ + + PDE LV DA GQ A+ +A+ F+++ I +++TK D RGG AL+ Sbjct: 199 DEMKAIASKVRPDEVALVIDASIGQKAMGLAERFHKSTPIGSIIVTKMDGTARGGGALTA 258 Query: 263 RTITGAPIKFIGVGEKVDDLEPFYPDRIASRILGMGDVVTLVEKARELTEAEEAEKLQEK 322 +TGA IKFIG GE + +LEPF P R +RILGMGD+ +L+E+ + L EA E ++ E Sbjct: 259 AAVTGARIKFIGTGETLGELEPFAPRRFVARILGMGDLESLLERIKSLEEAGELDRAAED 318 Query: 323 IKKATFTLEDYLEQFQKIKKMGSLQKLAELVPG--MQAAL--GGQEIDEKAVRREEAIIL 378 + K T+ Q + ++K+G L K+ +++PG M A++ G ++ E+ ++R AII Sbjct: 319 VLKGRITMRTIYRQLRAMRKLGPLGKVLQMLPGASMLASIDEGALKLGEEKMKRWMAIIE 378 Query: 379 SMTPAERRNPKIIGPSRKKRIARGSGTSVYEVNRLLKNFEKTR 421 SMT E P+II R +RIA GSGTSV +V LL ++ + Sbjct: 379 SMTYEELDRPEIIDKRRMRRIAIGSGTSVDDVRELLVYYKNLK 421 >gi|118431321|ref|NP_147702.2| signal recognition particle protein [Aeropyrum pernix K1] Length = 308 Score = 157 bits (396), Expect = 6e-40 Identities = 97/291 (33%), Positives = 154/291 (52%), Gaps = 8/291 (2%) Query: 12 IVRTITGKATISPKNIEEAVEQIKYALLEADVHVRVVRRFVNQTIQEATGERVLKSVTPG 71 IV T+ K + P+++E ++ I L+E+DV + V + TG RV + P Sbjct: 20 IVDTLAYKE-LKPEDLEPVLDDILIDLVESDVALEAAESIVAGVKEGLTGYRVRRG-EPV 77 Query: 72 QQFVKILYDKLVSFLGDE--RQDLALKGPDTLS----IILLAGLQGSGXXXXXXXXXXXX 125 ++ V+ K + L D R DLA + +IL G+ G+G Sbjct: 78 EKVVRDALRKALLTLLDPGPRPDLAAEARRRCGGRPLVILFLGVNGTGKTTTIAKVAYML 137 Query: 126 XXXGRRPLLVAADLARPAAIDQLETLGATIDVPVYTDRSLKDPRTLVKRALSHAKRQAVD 185 G P++ AAD R A +QL + VP+ R DP ++ A+ HA+ + Sbjct: 138 RKAGVTPVIAAADTFRAGAQEQLAVHAEKLGVPIVRGRYGGDPASVAYDAVKHAESRGFC 197 Query: 186 TLIVDTAGRHQVDRELMDELSRLVRDLSPDETLLVADAMTGQTAVDVAKAFNEAVGITGV 245 ++VDTAGR VD L++EL ++VR + PD +LV D++TG AV+ A+ F+EAVG+ GV Sbjct: 198 AVLVDTAGRMHVDSNLVEELRKIVRVVKPDYKILVVDSLTGNDAVEQARLFDEAVGVDGV 257 Query: 246 VLTKFDSDTRGGAALSIRTITGAPIKFIGVGEKVDDLEPFYPDRIASRILG 296 ++TK D+D +GG +S+ PI +IG G++ +DL PF P +I ++LG Sbjct: 258 IVTKVDADPKGGTLVSVAHAIRKPILYIGTGQRYEDLRPFDPQKIVDQLLG 308 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.134 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 389,822 Number of Sequences: 1700 Number of extensions: 16465 Number of successful extensions: 83 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77 Number of HSP's gapped (non-prelim): 2 length of query: 443 length of database: 492,079 effective HSP length: 80 effective length of query: 363 effective length of database: 356,079 effective search space: 129256677 effective search space used: 129256677 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718739|ref|YP_003874271.1| 30S ribosomal protein S16 [Spirochaeta thermophila DSM 6192] (83 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.137 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,786 Number of Sequences: 1700 Number of extensions: 3773 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 83 length of database: 492,079 effective HSP length: 53 effective length of query: 30 effective length of database: 401,979 effective search space: 12059370 effective search space used: 12059370 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718740|ref|YP_003874272.1| nucleic acid binding protein, containing KH domain [Spirochaeta thermophila DSM 6192] (77 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.136 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,713 Number of Sequences: 1700 Number of extensions: 2802 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 77 length of database: 492,079 effective HSP length: 47 effective length of query: 30 effective length of database: 412,179 effective search space: 12365370 effective search space used: 12365370 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718741|ref|YP_003874273.1| 16S rRNA processing protein RimM [Spirochaeta thermophila DSM 6192] (171 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 195,301 Number of Sequences: 1700 Number of extensions: 9054 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 171 length of database: 492,079 effective HSP length: 71 effective length of query: 100 effective length of database: 371,379 effective search space: 37137900 effective search space used: 37137900 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718742|ref|YP_003874274.1| tRNA (guanine-N(1)-)-methyltransferase [Spirochaeta thermophila DSM 6192] (252 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 260,432 Number of Sequences: 1700 Number of extensions: 11753 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 252 length of database: 492,079 effective HSP length: 75 effective length of query: 177 effective length of database: 364,579 effective search space: 64530483 effective search space used: 64530483 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718743|ref|YP_003874275.1| 50S ribosomal protein L19 [Spirochaeta thermophila DSM 6192] (118 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 112,671 Number of Sequences: 1700 Number of extensions: 4787 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 118 length of database: 492,079 effective HSP length: 66 effective length of query: 52 effective length of database: 379,879 effective search space: 19753708 effective search space used: 19753708 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718744|ref|YP_003874276.1| hypothetical protein STHERM_c10580 [Spirochaeta thermophila DSM 6192] (303 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.143 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 332,441 Number of Sequences: 1700 Number of extensions: 15632 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 303 length of database: 492,079 effective HSP length: 76 effective length of query: 227 effective length of database: 362,879 effective search space: 82373533 effective search space used: 82373533 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718745|ref|YP_003874277.1| hypothetical protein STHERM_c10590 [Spirochaeta thermophila DSM 6192] (104 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106,005 Number of Sequences: 1700 Number of extensions: 4573 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 104 length of database: 492,079 effective HSP length: 64 effective length of query: 40 effective length of database: 383,279 effective search space: 15331160 effective search space used: 15331160 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718746|ref|YP_003874278.1| HD domain-containing protein [Spirochaeta thermophila DSM 6192] (382 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 359,162 Number of Sequences: 1700 Number of extensions: 15457 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 382 length of database: 492,079 effective HSP length: 78 effective length of query: 304 effective length of database: 359,479 effective search space: 109281616 effective search space used: 109281616 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718747|ref|YP_003874279.1| hypothetical protein STHERM_c10610 [Spirochaeta thermophila DSM 6192] (68 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.143 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,628 Number of Sequences: 1700 Number of extensions: 2530 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 68 length of database: 492,079 effective HSP length: 39 effective length of query: 29 effective length of database: 425,779 effective search space: 12347591 effective search space used: 12347591 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718748|ref|YP_003874280.1| hypothetical protein STHERM_c10620 [Spirochaeta thermophila DSM 6192] (129 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 116,395 Number of Sequences: 1700 Number of extensions: 4667 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 129 length of database: 492,079 effective HSP length: 67 effective length of query: 62 effective length of database: 378,179 effective search space: 23447098 effective search space used: 23447098 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718749|ref|YP_003874281.1| hypothetical protein STHERM_c10640 [Spirochaeta thermophila DSM 6192] (246 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 265,092 Number of Sequences: 1700 Number of extensions: 12114 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 246 length of database: 492,079 effective HSP length: 74 effective length of query: 172 effective length of database: 366,279 effective search space: 62999988 effective search space used: 62999988 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718750|ref|YP_003874282.1| phosphopantetheine adenylyltransferase [Spirochaeta thermophila DSM 6192] (171 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 172,665 Number of Sequences: 1700 Number of extensions: 6931 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 171 length of database: 492,079 effective HSP length: 71 effective length of query: 100 effective length of database: 371,379 effective search space: 37137900 effective search space used: 37137900 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718751|ref|YP_003874283.1| K+-dependent Na+/Ca+ exchanger-like protein [Spirochaeta thermophila DSM 6192] (334 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.140 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 246,603 Number of Sequences: 1700 Number of extensions: 8050 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 334 length of database: 492,079 effective HSP length: 77 effective length of query: 257 effective length of database: 361,179 effective search space: 92823003 effective search space used: 92823003 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718752|ref|YP_003874284.1| hypothetical protein STHERM_c10660 [Spirochaeta thermophila DSM 6192] (80 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.134 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,912 Number of Sequences: 1700 Number of extensions: 1743 Number of successful extensions: 3 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 80 length of database: 492,079 effective HSP length: 50 effective length of query: 30 effective length of database: 407,079 effective search space: 12212370 effective search space used: 12212370 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718753|ref|YP_003874285.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM 6192] (194 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 205,334 Number of Sequences: 1700 Number of extensions: 8875 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 194 length of database: 492,079 effective HSP length: 72 effective length of query: 122 effective length of database: 369,679 effective search space: 45100838 effective search space used: 45100838 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718754|ref|YP_003874286.1| polyA polymerase family protein [Spirochaeta thermophila DSM 6192] (421 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 448,222 Number of Sequences: 1700 Number of extensions: 20260 Number of successful extensions: 70 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 0 length of query: 421 length of database: 492,079 effective HSP length: 79 effective length of query: 342 effective length of database: 357,779 effective search space: 122360418 effective search space used: 122360418 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718755|ref|YP_003874287.1| flagellar filament 33 kDa core protein, class B [Spirochaeta thermophila DSM 6192] (290 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.130 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 218,711 Number of Sequences: 1700 Number of extensions: 8380 Number of successful extensions: 27 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 0 length of query: 290 length of database: 492,079 effective HSP length: 76 effective length of query: 214 effective length of database: 362,879 effective search space: 77656106 effective search space used: 77656106 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718756|ref|YP_003874288.1| thiamine pyrophosphokinase [Spirochaeta thermophila DSM 6192] (226 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.146 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 260,946 Number of Sequences: 1700 Number of extensions: 11866 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 226 length of database: 492,079 effective HSP length: 74 effective length of query: 152 effective length of database: 366,279 effective search space: 55674408 effective search space used: 55674408 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718757|ref|YP_003874289.1| hypothetical protein STHERM_c10710 [Spirochaeta thermophila DSM 6192] (167 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430889|ref|NP_146980.2| hypothetical protein APE_0122.1 [A... 101 1e-23 gi|118431900|ref|NP_148648.2| HIT family protein [Aeropyrum pern... 46 6e-07 >gi|118430889|ref|NP_146980.2| hypothetical protein APE_0122.1 [Aeropyrum pernix K1] Length = 177 Score = 101 bits (251), Expect = 1e-23 Identities = 50/159 (31%), Positives = 84/159 (52%), Gaps = 5/159 (3%) Query: 9 KLGYVQSRTTDKGCILCHIAQHDGTVPELVLWEDETFMVSVNLYPYNPGHLLLFPRHHTE 68 ++ Y++ + +GC+ C L+++ V +N YPYN GH+++ P H Sbjct: 19 RMKYIKQAGSREGCVFCEAPSMGDDAKALIVYRGSLSYVILNKYPYNSGHIMVTPYRHVA 78 Query: 69 DIRDLTGEQQVRLIDLTRACLTLLDHTYHPSGYNVGFNMGLCAGASIP-HLHQHIIPRFP 127 ++ DLT ++ V + L RA + L Y P G+N+G N+G AGA I H H HI+PR+ Sbjct: 79 ELEDLTMDEIVEMAKLVRASVKALKRVYAPHGFNIGVNIGEAAGAGIAGHFHIHIVPRWR 138 Query: 128 NEIGIGELLGGNRILVEDPRRTLDRLK----ETAREKGL 162 + +GG +++ E T +LK E AR++G+ Sbjct: 139 GDSNFMLTVGGTKVIPESLEDTFKKLKPAVEEEARKEGV 177 >gi|118431900|ref|NP_148648.2| HIT family protein [Aeropyrum pernix K1] Length = 149 Score = 45.8 bits (107), Expect = 6e-07 Identities = 38/135 (28%), Positives = 53/135 (39%), Gaps = 8/135 (5%) Query: 22 CILCHIAQHDGTVPELVLWEDETFMVSVNLYPYNPGHLLLFPRHHTEDIRDLTGEQQVRL 81 CI C I + G +++ V ++ YP + GHLL+ P H E I ++ Sbjct: 3 CIFCRIVK--GEAEAYTVYKGNGVTVFLDRYPASKGHLLVVPDEHYESIHTAPPRVAAKV 60 Query: 82 IDLTRACLTLLDHTYHPSGYNVGFNMGLCAGASIPHLHQHIIPRFPNEIGIGELLGGNR- 140 A NV N G AG I H H H+IPR+ G G+R Sbjct: 61 WLAASAIARYYREKAGAPAVNVLTNSGRYAGQIIFHFHVHVIPRW----GPPRSFWGDRH 116 Query: 141 -ILVEDPRRTLDRLK 154 I E+ LD L+ Sbjct: 117 EITPEEAGEVLDTLR 131 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.144 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 176,450 Number of Sequences: 1700 Number of extensions: 7321 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 2 length of query: 167 length of database: 492,079 effective HSP length: 71 effective length of query: 96 effective length of database: 371,379 effective search space: 35652384 effective search space used: 35652384 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718758|ref|YP_003874290.1| hypothetical protein STHERM_c10720 [Spirochaeta thermophila DSM 6192] (270 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 267,392 Number of Sequences: 1700 Number of extensions: 11054 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 270 length of database: 492,079 effective HSP length: 75 effective length of query: 195 effective length of database: 364,579 effective search space: 71092905 effective search space used: 71092905 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718759|ref|YP_003874291.1| hypothetical protein STHERM_c10730 [Spirochaeta thermophila DSM 6192] (314 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 352,738 Number of Sequences: 1700 Number of extensions: 16833 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 0 length of query: 314 length of database: 492,079 effective HSP length: 77 effective length of query: 237 effective length of database: 361,179 effective search space: 85599423 effective search space used: 85599423 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718760|ref|YP_003874292.1| hypothetical protein STHERM_c10740 [Spirochaeta thermophila DSM 6192] (106 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.336 0.147 0.484 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,483 Number of Sequences: 1700 Number of extensions: 408 Number of successful extensions: 0 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 106 length of database: 492,079 effective HSP length: 65 effective length of query: 41 effective length of database: 381,579 effective search space: 15644739 effective search space used: 15644739 T: 11 A: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718761|ref|YP_003874293.1| hypothetical protein STHERM_c10750 [Spirochaeta thermophila DSM 6192] (267 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431332|ref|NP_147721.2| methionine aminopeptidase [Aeropyr... 67 6e-13 gi|118431092|ref|NP_147302.2| Xaa-Pro dipeptidase [Aeropyrum per... 48 3e-07 >gi|118431332|ref|NP_147721.2| methionine aminopeptidase [Aeropyrum pernix K1] Length = 307 Score = 66.6 bits (161), Expect = 6e-13 Identities = 61/191 (31%), Positives = 88/191 (46%), Gaps = 17/191 (8%) Query: 48 ICELAMARKKVRPSLELDAGFPYPVSFCLNDVAAHGVPA---DYVLRDNDLLTIDITVAL 104 +CEL +K+R L A +P + L+ VAAH P D + ++ +D+ A+ Sbjct: 36 VCELV--EEKIR---SLGAVPAFPCNISLDSVAAHYTPGLRDDCSIGGGSVVKLDVGAAV 90 Query: 105 EGWHGDGAWTYISGKVDEEG--RALVRAAWRCTMAGIRAAVAGGFVRDIGAAIEEEASRV 162 EG+ D A T VD G R+LV A+ A ++ G DIG A+E+ R Sbjct: 91 EGYIADTAVT-----VDLGGGHRSLVEASVEGLRAAMKVLKPGARFYDIGRAVEQAVRRR 145 Query: 163 GCSVIPDFAGHGIGR-AYHEEPLIYHHGIPGTGL-KIVPGMVFTIEPIVTFGRPEVFKDG 220 G V+ + +GH I R H I ++G + +I PGM F IEP T GR V + Sbjct: 146 GFKVVKNLSGHTIDRYTIHAGLSIPNYGDRTAWIHRIRPGMTFAIEPFATNGRGMVREGS 205 Query: 221 TGGFRMRDGSK 231 T G K Sbjct: 206 TVNIYAYTGRK 216 >gi|118431092|ref|NP_147302.2| Xaa-Pro dipeptidase [Aeropyrum pernix K1] Length = 373 Score = 47.8 bits (112), Expect = 3e-07 Identities = 56/222 (25%), Positives = 83/222 (37%), Gaps = 19/222 (8%) Query: 9 LKTPVEVTCIRRSCRFIEVLFRHIKPMVRPGVNMKELLH-ICELAMARKKVRPSLELDAG 67 +K E+ I + R E R +R GV+ +E+ + ++ M PS Sbjct: 150 VKEEWEIGLIAEAARIAEAALRRGIEELREGVSEREVAGAVVDVIMKSGGWGPS------ 203 Query: 68 FPYPVSFCLNDVAAHGVPADYVLRDNDLLTIDITVALEGWHGDGAWTYISGKVDEEGRAL 127 FP V+F N H D L + D+ +G+ D + G E R L Sbjct: 204 FPVIVAFGGNTALPHHHTGDARLPHASPVLFDLGSVYKGYMSDMTRSLWRGPGGAEYRRL 263 Query: 128 VRAAWRCTMAGIRAAVAGGFVRDIGAAIEEEASRVGCS-VIPDFAGHGIGRAYHEEPLIY 186 I + G ++ A S+ G S GHG+G HE P + Sbjct: 264 EELVAEAQAEAIDSVAPGVEAWEVDKAARLRLSKEGFSKYFIHGTGHGVGVEIHENPYLR 323 Query: 187 HHGIPGTGLKIVPGMVFTIEPIVTFGRPEVFKDGTGGFRMRD 228 PG+ ++ PGMV TIE P V+ G G R+ D Sbjct: 324 ----PGSSEELKPGMVVTIE-------PGVYLPGMYGVRIED 354 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.143 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 303,737 Number of Sequences: 1700 Number of extensions: 14580 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 2 length of query: 267 length of database: 492,079 effective HSP length: 75 effective length of query: 192 effective length of database: 364,579 effective search space: 69999168 effective search space used: 69999168 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718762|ref|YP_003874294.1| hypothetical protein STHERM_c10760 [Spirochaeta thermophila DSM 6192] (145 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.145 0.483 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 135,875 Number of Sequences: 1700 Number of extensions: 5155 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 145 length of database: 492,079 effective HSP length: 69 effective length of query: 76 effective length of database: 374,779 effective search space: 28483204 effective search space used: 28483204 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718763|ref|YP_003874295.1| hypothetical protein STHERM_c10770 [Spirochaeta thermophila DSM 6192] (314 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600511|ref|NP_147027.1| exonuclease [Aeropyrum pernix K1] 45 2e-06 >gi|14600511|ref|NP_147027.1| exonuclease [Aeropyrum pernix K1] Length = 420 Score = 45.1 bits (105), Expect = 2e-06 Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 13/181 (7%) Query: 62 ACVEVRSGADILLFDAGSGIRDFATEIMRRPRKQREYH-LFFSHFHWDHIIGLPFFTPLY 120 A + V SG LL D G + + + R+ L +H H DHI P+ Sbjct: 16 AAILVESGGRGLLLDYGVNFDENDRPVFPGDVRPRDLDGLVLTHSHLDHIGAAPYLYVSQ 75 Query: 121 DP---GVRVCLYSPVRRFREYLEVLMSPPFFPV---TMEAMRADKEFIVLEEDVPYRVGR 174 P G RV L+ V R Y + ++ + P ++E M E+I + Y GR Sbjct: 76 GPKVFGTRVTLH--VSRLLLYDMIKLNGAYLPYDERSVEDMLGTAEYIDYGRE--YEAGR 131 Query: 175 GFVTPIPMTHPGGSYAYRIEKGGKAVLYATDVELADEDFLPTPENRRRFSGVDLLIIDSQ 234 H GS A +E G+ +LY +DV + + + R + D++I++S Sbjct: 132 FAFKTFYSGHIPGSTAVLVEVDGRRILYTSDVNVIETKLVGPA--RLEGAKADVVIVEST 189 Query: 235 Y 235 Y Sbjct: 190 Y 190 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 346,718 Number of Sequences: 1700 Number of extensions: 16283 Number of successful extensions: 64 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 63 Number of HSP's gapped (non-prelim): 1 length of query: 314 length of database: 492,079 effective HSP length: 77 effective length of query: 237 effective length of database: 361,179 effective search space: 85599423 effective search space used: 85599423 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718764|ref|YP_003874296.1| hypothetical protein STHERM_c10780 [Spirochaeta thermophila DSM 6192] (63 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,243 Number of Sequences: 1700 Number of extensions: 2186 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 63 length of database: 492,079 effective HSP length: 35 effective length of query: 28 effective length of database: 432,579 effective search space: 12112212 effective search space used: 12112212 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718765|ref|YP_003874297.1| OmpA family protein [Spirochaeta thermophila DSM 6192] (1337 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,498,388 Number of Sequences: 1700 Number of extensions: 76441 Number of successful extensions: 183 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 183 Number of HSP's gapped (non-prelim): 0 length of query: 1337 length of database: 492,079 effective HSP length: 88 effective length of query: 1249 effective length of database: 342,479 effective search space: 427756271 effective search space used: 427756271 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718766|ref|YP_003874298.1| hypothetical protein STHERM_c10800 [Spirochaeta thermophila DSM 6192] (347 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 360,071 Number of Sequences: 1700 Number of extensions: 17068 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 347 length of database: 492,079 effective HSP length: 78 effective length of query: 269 effective length of database: 359,479 effective search space: 96699851 effective search space used: 96699851 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718767|ref|YP_003874299.1| DNA primase [Spirochaeta thermophila DSM 6192] (596 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 550,762 Number of Sequences: 1700 Number of extensions: 23597 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 0 length of query: 596 length of database: 492,079 effective HSP length: 82 effective length of query: 514 effective length of database: 352,679 effective search space: 181277006 effective search space used: 181277006 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718768|ref|YP_003874300.1| RNA polymerase sigma factor [Spirochaeta thermophila DSM 6192] (580 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.133 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 497,759 Number of Sequences: 1700 Number of extensions: 21032 Number of successful extensions: 97 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97 Number of HSP's gapped (non-prelim): 0 length of query: 580 length of database: 492,079 effective HSP length: 82 effective length of query: 498 effective length of database: 352,679 effective search space: 175634142 effective search space used: 175634142 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718769|ref|YP_003874301.1| nucleic acid-binding Zn-ribbon protein [Spirochaeta thermophila DSM 6192] (350 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600971|ref|NP_147497.1| hypothetical protein APE_0790 [Aero... 40 9e-05 >gi|14600971|ref|NP_147497.1| hypothetical protein APE_0790 [Aeropyrum pernix K1] Length = 297 Score = 40.0 bits (92), Expect = 9e-05 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 11/98 (11%) Query: 22 KLQKEMKELPHTLTAKKEMLVRLKEDFLQKNQRYEQVKSKVKELREQLAEAEQKRAELEA 81 + +KE +EL T+ KE +VRLKE+ ++ ++VK LRE+ +A +++ E Sbjct: 8 EFKKEEEELLKTIEELKEEIVRLKEE-------RRKLINEVKALREERRKASREKREYVE 60 Query: 82 RMEFLQTQR----EFEAQDKEIRMAAEKEQQIRRDLQR 115 ++ L+ +R + AQ KE R E I+RD R Sbjct: 61 KLRSLREERKKILDELAQLKEERKKTRDELVIKRDQLR 98 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.136 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 150,181 Number of Sequences: 1700 Number of extensions: 4383 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 4 length of query: 350 length of database: 492,079 effective HSP length: 78 effective length of query: 272 effective length of database: 359,479 effective search space: 97778288 effective search space used: 97778288 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718770|ref|YP_003874302.1| hypothetical protein STHERM_c10840 [Spirochaeta thermophila DSM 6192] (259 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 247,072 Number of Sequences: 1700 Number of extensions: 10785 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 259 length of database: 492,079 effective HSP length: 75 effective length of query: 184 effective length of database: 364,579 effective search space: 67082536 effective search space used: 67082536 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718771|ref|YP_003874303.1| hypothetical protein STHERM_c10850 [Spirochaeta thermophila DSM 6192] (343 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.138 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 381,019 Number of Sequences: 1700 Number of extensions: 19234 Number of successful extensions: 88 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88 Number of HSP's gapped (non-prelim): 0 length of query: 343 length of database: 492,079 effective HSP length: 78 effective length of query: 265 effective length of database: 359,479 effective search space: 95261935 effective search space used: 95261935 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718772|ref|YP_003874304.1| rod shape-determining protein MreC [Spirochaeta thermophila DSM 6192] (275 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 277,990 Number of Sequences: 1700 Number of extensions: 12967 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 275 length of database: 492,079 effective HSP length: 76 effective length of query: 199 effective length of database: 362,879 effective search space: 72212921 effective search space used: 72212921 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718773|ref|YP_003874305.1| hypothetical protein STHERM_c10870 [Spirochaeta thermophila DSM 6192] (164 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.332 0.146 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 153,506 Number of Sequences: 1700 Number of extensions: 6573 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 164 length of database: 492,079 effective HSP length: 70 effective length of query: 94 effective length of database: 373,079 effective search space: 35069426 effective search space used: 35069426 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718774|ref|YP_003874306.1| penicillin-binding protein [Spirochaeta thermophila DSM 6192] (619 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 652,033 Number of Sequences: 1700 Number of extensions: 31272 Number of successful extensions: 97 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97 Number of HSP's gapped (non-prelim): 0 length of query: 619 length of database: 492,079 effective HSP length: 82 effective length of query: 537 effective length of database: 352,679 effective search space: 189388623 effective search space used: 189388623 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718775|ref|YP_003874307.1| hypothetical protein STHERM_c10890 [Spirochaeta thermophila DSM 6192] (437 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.146 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 413,185 Number of Sequences: 1700 Number of extensions: 17125 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 437 length of database: 492,079 effective HSP length: 80 effective length of query: 357 effective length of database: 356,079 effective search space: 127120203 effective search space used: 127120203 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718776|ref|YP_003874308.1| hypothetical protein STHERM_c10900 [Spirochaeta thermophila DSM 6192] (848 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431345|ref|NP_147750.2| hypothetical protein APE_1158.1 [A... 117 9e-28 >gi|118431345|ref|NP_147750.2| hypothetical protein APE_1158.1 [Aeropyrum pernix K1] Length = 522 Score = 117 bits (294), Expect = 9e-28 Identities = 122/472 (25%), Positives = 206/472 (43%), Gaps = 38/472 (8%) Query: 39 TIAICFPDLYEIGMSNTAIYYLYDLLNRIPGVHCERVFAPAPDFERSLSDHGLLLYGLET 98 T+ + +P + S+ A + + LL+ + GV + F E + + G L ET Sbjct: 6 TVLLLYPGPRSVAYSSLAFHLIRGLLSSM-GVGVKTAF-----LEDGVLEAGQPLDPRET 59 Query: 99 RTPLREFDIVAISVGYELGFTNIATILRTGGVAVEGARRSLAGDPVILMGGPGAT-NPLP 157 R V +S+ YE+ + ++ L G+ AR GDP+++ GGP AT NP P Sbjct: 60 RA-------VLVSLPYEIMYADMVRALEQLGLN-PWARGRGEGDPLVIAGGPAATANPAP 111 Query: 158 FASLVDAVFVGEFEAIYPDLLYRLRDEKRKGGDRDTILQVLGEDPHVWMPGKQK-AKRAI 216 LVDAV VGE E + L+ L++ R+G L+ L P V +P + + Sbjct: 112 LLDLVDAVLVGELEPVAEGLVDALQEPTRRGR-----LEALSRLPGVLVPSLENWPVTRV 166 Query: 217 WMGFGEPRIY--SYRPVPNIPAVQDHA-VVEIMRGCPQGCRFCHAGIFYRPQRVKPPSAI 273 ++ + Y R P + V ++E RGC +GCRFC G +RP+R + + Sbjct: 167 YVEDLDAAWYPLDQRAPPGVEPVWGRGFILETSRGCGRGCRFCMEGTVFRPRRDRSLEVL 226 Query: 274 HEEVRHLHEDLGYREITLASLSSGDYPGIFDLVRSLNREFAGRHLSFALPSLKVSTFALE 333 +R G + + SL D +++ + L ++PSL+ T E Sbjct: 227 KHLLREGVRVNGAQRVIFYSLVFFDNRASDEILWYAVEDLG---LQASVPSLRAETLTWE 283 Query: 334 LLEEIGRGKKSGLTFAVETPYPEGQKGLNKEVELEKVISILQRAKEEGWRLAKFYFMIGL 393 I RG + +T A ET + + K + + + + A +G K Y + G Sbjct: 284 RAGLIARGGQRTVTIAPETGSCTIARAILKPIGGDITLWAVDNALGQGITGVKLYLITGF 343 Query: 394 PHSIEDEREPER--IVEYIETISRATRISIHVNIGTFVPKPHTPFQW---APQLSYEEAK 448 P E++ R + +E + +A ++ +I F+PKP T QW AP+ EE Sbjct: 344 PGEGEEDLAQTRDLALRVVERVRKAGGVA-KASINPFMPKPVTGMQWAGLAPRRLLEERI 402 Query: 449 RRIFQVRDRLKRYKWVKVGFHNPLQSVLEGLLSRGDERVGGLFLEAWERGAR 500 R+ R R +V ++P + ++ L+RG + + +E W R R Sbjct: 403 NRL----SRALRRAGARVSGYDPRWAEVQVALARGGREMARVVVE-WARMPR 449 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 967,978 Number of Sequences: 1700 Number of extensions: 48260 Number of successful extensions: 135 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 130 Number of HSP's gapped (non-prelim): 1 length of query: 848 length of database: 492,079 effective HSP length: 85 effective length of query: 763 effective length of database: 347,579 effective search space: 265202777 effective search space used: 265202777 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718777|ref|YP_003874309.1| hypothetical protein STHERM_c10910 [Spirochaeta thermophila DSM 6192] (301 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 270,605 Number of Sequences: 1700 Number of extensions: 10762 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 301 length of database: 492,079 effective HSP length: 76 effective length of query: 225 effective length of database: 362,879 effective search space: 81647775 effective search space used: 81647775 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718778|ref|YP_003874310.1| hypothetical protein STHERM_c10920 [Spirochaeta thermophila DSM 6192] (99 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.334 0.145 0.476 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,691 Number of Sequences: 1700 Number of extensions: 4065 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 99 length of database: 492,079 effective HSP length: 64 effective length of query: 35 effective length of database: 383,279 effective search space: 13414765 effective search space used: 13414765 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718779|ref|YP_003874311.1| hypothetical protein STHERM_c10930 [Spirochaeta thermophila DSM 6192] (242 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 262,164 Number of Sequences: 1700 Number of extensions: 12290 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 242 length of database: 492,079 effective HSP length: 74 effective length of query: 168 effective length of database: 366,279 effective search space: 61534872 effective search space used: 61534872 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718780|ref|YP_003874312.1| hypothetical protein STHERM_c10940 [Spirochaeta thermophila DSM 6192] (787 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 813,704 Number of Sequences: 1700 Number of extensions: 38207 Number of successful extensions: 109 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109 Number of HSP's gapped (non-prelim): 0 length of query: 787 length of database: 492,079 effective HSP length: 84 effective length of query: 703 effective length of database: 349,279 effective search space: 245543137 effective search space used: 245543137 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718781|ref|YP_003874313.1| hypothetical protein STHERM_c10950 [Spirochaeta thermophila DSM 6192] (226 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 216,222 Number of Sequences: 1700 Number of extensions: 8729 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 0 length of query: 226 length of database: 492,079 effective HSP length: 74 effective length of query: 152 effective length of database: 366,279 effective search space: 55674408 effective search space used: 55674408 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718782|ref|YP_003874314.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (503 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 472,336 Number of Sequences: 1700 Number of extensions: 20176 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 503 length of database: 492,079 effective HSP length: 81 effective length of query: 422 effective length of database: 354,379 effective search space: 149547938 effective search space used: 149547938 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718783|ref|YP_003874315.1| 30S ribosomal protein S1 [Spirochaeta thermophila DSM 6192] (800 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 745,187 Number of Sequences: 1700 Number of extensions: 31344 Number of successful extensions: 130 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 130 Number of HSP's gapped (non-prelim): 0 length of query: 800 length of database: 492,079 effective HSP length: 84 effective length of query: 716 effective length of database: 349,279 effective search space: 250083764 effective search space used: 250083764 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718784|ref|YP_003874316.1| pseudouridylate synthase [Spirochaeta thermophila DSM 6192] (255 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 257,911 Number of Sequences: 1700 Number of extensions: 10798 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 255 length of database: 492,079 effective HSP length: 75 effective length of query: 180 effective length of database: 364,579 effective search space: 65624220 effective search space used: 65624220 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718785|ref|YP_003874317.1| transcriptional regulator [Spirochaeta thermophila DSM 6192] (178 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 152,701 Number of Sequences: 1700 Number of extensions: 5638 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 178 length of database: 492,079 effective HSP length: 71 effective length of query: 107 effective length of database: 371,379 effective search space: 39737553 effective search space used: 39737553 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718786|ref|YP_003874318.1| segregation and condensation protein A [Spirochaeta thermophila DSM 6192] (243 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 219,243 Number of Sequences: 1700 Number of extensions: 8785 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 243 length of database: 492,079 effective HSP length: 74 effective length of query: 169 effective length of database: 366,279 effective search space: 61901151 effective search space used: 61901151 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718787|ref|YP_003874319.1| hypothetical protein STHERM_c11010 [Spirochaeta thermophila DSM 6192] (166 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 168,469 Number of Sequences: 1700 Number of extensions: 6585 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 166 length of database: 492,079 effective HSP length: 70 effective length of query: 96 effective length of database: 373,079 effective search space: 35815584 effective search space used: 35815584 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718788|ref|YP_003874320.1| DNA integration/recombination/invertion protein [Spirochaeta thermophila DSM 6192] (375 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600463|ref|NP_146978.1| DNA repair and recombination protei... 55 2e-09 >gi|14600463|ref|NP_146978.1| DNA repair and recombination protein RadA [Aeropyrum pernix K1] Length = 319 Score = 55.5 bits (132), Expect = 2e-09 Identities = 53/214 (24%), Positives = 103/214 (48%), Gaps = 24/214 (11%) Query: 43 VEGLDV--IPSGSILLDYALGVGGYPKGRIIEIYGPESSGKTTIALHAIAEAQ---KRGG 97 +E +++ I +GS LD LG GG I E++G SGKT I Q +GG Sbjct: 78 IESMNIKKITTGSRNLDELLG-GGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGG 136 Query: 98 I---AAFVDAEHALD----PTYAKNLGVNIDEL-----WVSQPSSGEEALEITE--SLVR 143 + A +VD E A+ +G++ DE+ W+ +S + + + ++V+ Sbjct: 137 LEGKAVYVDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVK 196 Query: 144 SGAIDIIVVDSVAALTPQAEIDGDMGDAHVGLQARLMSQALRKLTGAVAKSGTCLIFINQ 203 + I ++VVDSV + +AE G ++ ++ +L+++ L +L ++ NQ Sbjct: 197 NDNIKLVVVDSVTSHF-RAEFPGR---ENLAMRQQLLNRHLHQLMRLADIFNVAVVITNQ 252 Query: 204 IRMKIGVMFGNPETTTGGNALKFYATIRLDVRRT 237 + + V +G+P GG+ L +R+ ++++ Sbjct: 253 VMARPDVFYGDPTQAVGGHVLGHAPGVRVYLKKS 286 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 359,477 Number of Sequences: 1700 Number of extensions: 16541 Number of successful extensions: 97 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 96 Number of HSP's gapped (non-prelim): 1 length of query: 375 length of database: 492,079 effective HSP length: 78 effective length of query: 297 effective length of database: 359,479 effective search space: 106765263 effective search space used: 106765263 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718789|ref|YP_003874321.1| D-tyrosyl-tRNA(Tyr) deacylase [Spirochaeta thermophila DSM 6192] (130 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 110,688 Number of Sequences: 1700 Number of extensions: 3835 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 130 length of database: 492,079 effective HSP length: 67 effective length of query: 63 effective length of database: 378,179 effective search space: 23825277 effective search space used: 23825277 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718790|ref|YP_003874322.1| hypothetical protein STHERM_c11040 [Spirochaeta thermophila DSM 6192] (364 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.144 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 401,379 Number of Sequences: 1700 Number of extensions: 19213 Number of successful extensions: 67 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 0 length of query: 364 length of database: 492,079 effective HSP length: 78 effective length of query: 286 effective length of database: 359,479 effective search space: 102810994 effective search space used: 102810994 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718791|ref|YP_003874323.1| hypothetical protein STHERM_c11050 [Spirochaeta thermophila DSM 6192] (272 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.132 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 252,317 Number of Sequences: 1700 Number of extensions: 11163 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 0 length of query: 272 length of database: 492,079 effective HSP length: 75 effective length of query: 197 effective length of database: 364,579 effective search space: 71822063 effective search space used: 71822063 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718792|ref|YP_003874324.1| hypothetical protein STHERM_c11060 [Spirochaeta thermophila DSM 6192] (311 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 306,080 Number of Sequences: 1700 Number of extensions: 12520 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 311 length of database: 492,079 effective HSP length: 77 effective length of query: 234 effective length of database: 361,179 effective search space: 84515886 effective search space used: 84515886 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718793|ref|YP_003874325.1| hypothetical protein STHERM_c11070 [Spirochaeta thermophila DSM 6192] (898 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 847,746 Number of Sequences: 1700 Number of extensions: 36806 Number of successful extensions: 136 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 136 Number of HSP's gapped (non-prelim): 0 length of query: 898 length of database: 492,079 effective HSP length: 85 effective length of query: 813 effective length of database: 347,579 effective search space: 282581727 effective search space used: 282581727 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718794|ref|YP_003874326.1| PBS lyase HEAT-like repeat domain-containing protein [Spirochaeta thermophila DSM 6192] (456 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.133 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 419,088 Number of Sequences: 1700 Number of extensions: 17630 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 0 length of query: 456 length of database: 492,079 effective HSP length: 80 effective length of query: 376 effective length of database: 356,079 effective search space: 133885704 effective search space used: 133885704 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718795|ref|YP_003874327.1| virulence factor MviN [Spirochaeta thermophila DSM 6192] (519 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.141 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 402,440 Number of Sequences: 1700 Number of extensions: 15572 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 0 length of query: 519 length of database: 492,079 effective HSP length: 81 effective length of query: 438 effective length of database: 354,379 effective search space: 155218002 effective search space used: 155218002 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718796|ref|YP_003874328.1| queuine tRNA-ribosyltransferase [Spirochaeta thermophila DSM 6192] (381 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601784|ref|NP_148325.1| 7-cyano-7-deazaguanine tRNA-ribosyl... 96 2e-21 >gi|14601784|ref|NP_148325.1| 7-cyano-7-deazaguanine tRNA-ribosyltransferase [Aeropyrum pernix K1] Length = 512 Score = 95.5 bits (236), Expect = 2e-21 Identities = 98/353 (27%), Positives = 149/353 (42%), Gaps = 42/353 (11%) Query: 10 RDPSCLARTGRLLLPHGEVETPVFMPVGTNGSVKAVDFSVLDEMGIRLILSNTYHLFLRP 69 RD R GR+ HG VETP F PV + + V + G +++N Y L+ R Sbjct: 5 RDVDLAGRIGRIYTQHGVVETPAFFPV-IDVYRQEVSVDEVRAAGFGQVITNAYLLWKRF 63 Query: 70 GVDIIREAGGLHSFIGWQGNILTDSGGYQVFSLAPFRKIREEGIYFRSHIDGSYHTLTPE 129 G + + G+H +G+ G ++TDSG YQ+ G+ L+ Sbjct: 64 GWEAAEK--GVHRILGFPGVVMTDSGAYQILEYG--------GV-----------ELSQG 102 Query: 130 GVVDIQTAFGSDVMMPLDVCTPPGISKKEAEEALEITTAWARRSKERWESLREETGGLLF 189 VV+ Q GSD+ + LD+ T + ++EAEE++ T RR+ E + + ++ Sbjct: 103 EVVEYQKRLGSDIAVILDIPT-GDVGRREAEESVRET---IRRALEARVMIEGDERIWVY 158 Query: 190 GIVQGNFFHDLRRRSVEEICALDLPGT-AIGGLSV---GESFPVFQEFLAFTAALLPPEV 245 VQG + DL S L IG +V + V E + LP Sbjct: 159 P-VQGGRYFDLVEESARVGGRLGFYRMYGIGSPTVFLERYMYHVVVEAVYRAKKHLPWGR 217 Query: 246 PHYLMGIGTPEYILEAVEQGIDMFDCVFPTRTARNASVFTRSGRISLRRERFTRDFSPLD 305 P +L G G P AV G+D FD AR T G + D+ P Sbjct: 218 PVHLFGAGHPLIFPYAVALGVDTFDSASYILYAREGRYITEYGVYRIE----DLDYLP-- 271 Query: 306 PECSCYTCRRYTRAYLRHLFKTQEIMGPVLATIHNLHFLFTMVEEIRESIREG 358 CSC C RYT LR + + + L +HNL+ + + ++++IREG Sbjct: 272 --CSCPVCSRYTPQELREMDRVERTR---LLALHNLYVISASMRRVKQAIREG 319 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 406,314 Number of Sequences: 1700 Number of extensions: 18799 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 1 length of query: 381 length of database: 492,079 effective HSP length: 78 effective length of query: 303 effective length of database: 359,479 effective search space: 108922137 effective search space used: 108922137 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718797|ref|YP_003874329.1| YjgP/YjgQ family permease [Spirochaeta thermophila DSM 6192] (361 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.141 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 310,000 Number of Sequences: 1700 Number of extensions: 12791 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 0 length of query: 361 length of database: 492,079 effective HSP length: 78 effective length of query: 283 effective length of database: 359,479 effective search space: 101732557 effective search space used: 101732557 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718798|ref|YP_003874330.1| hypothetical protein STHERM_c11120 [Spirochaeta thermophila DSM 6192] (424 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.138 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 301,816 Number of Sequences: 1700 Number of extensions: 9666 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 424 length of database: 492,079 effective HSP length: 79 effective length of query: 345 effective length of database: 357,779 effective search space: 123433755 effective search space used: 123433755 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718799|ref|YP_003874331.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila DSM 6192] (709 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [... 92 3e-20 >gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [Aeropyrum pernix K1] Length = 246 Score = 92.4 bits (228), Expect = 3e-20 Identities = 74/235 (31%), Positives = 119/235 (50%), Gaps = 14/235 (5%) Query: 306 ILERGIRTDGRGPEDIRPITCEIGVLPRTHGSALFTRGETQALAITTLGTVFDEQIMDDL 365 ++ G R DGR PED+RP+ ++G+L GSAL G T+ LA G Q L Sbjct: 11 LIRDGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLA-AVYGPREPHQRFYVL 69 Query: 366 EGDKRENFMLHYNFPPFSVGEVGRLYTGRREIGHGHLAHRALEAVLPSKDDFPYT-LRVV 424 R + Y+ PFS E RREI + ALE V+ + ++FP T + V Sbjct: 70 PD--RAALRVRYHMAPFSTDERKSPAPSRREIELSKVVREALEPVVLA-EEFPRTVIDVF 126 Query: 425 SEILESNGSSSMATVCGSTLSLLNAGVPIKKPVAGIAMGLVTDGERTVILSDILGEEDHF 484 E+L+++G + A V ++L+L +AG+P++ V G+A+G + + V++ D+ ED + Sbjct: 127 LEVLQADGGTRTAAVTAASLALADAGIPMRALVGGVAVGKI----QGVLVVDVDELEDMY 182 Query: 485 GDMDFKVAGTED--GITAFQMDIKIKNIDPATMRKALEQARRGRLHILGIMNQAI 537 G+ D VA D IT Q++ + + R AL A R ++ + +AI Sbjct: 183 GEADMPVAAAPDIGEITLLQLNGVLTGEE---FRTALAMALRAIDRVVEMEKEAI 234 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 693,763 Number of Sequences: 1700 Number of extensions: 32079 Number of successful extensions: 119 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117 Number of HSP's gapped (non-prelim): 1 length of query: 709 length of database: 492,079 effective HSP length: 83 effective length of query: 626 effective length of database: 350,979 effective search space: 219712854 effective search space used: 219712854 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718800|ref|YP_003874332.1| 30S ribosomal protein S15 [Spirochaeta thermophila DSM 6192] (89 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,384 Number of Sequences: 1700 Number of extensions: 2379 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 89 length of database: 492,079 effective HSP length: 58 effective length of query: 31 effective length of database: 393,479 effective search space: 12197849 effective search space used: 12197849 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718801|ref|YP_003874333.1| riboflavin biosynthesis protein RibF [Spirochaeta thermophila DSM 6192] (263 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 289,439 Number of Sequences: 1700 Number of extensions: 13985 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 0 length of query: 263 length of database: 492,079 effective HSP length: 75 effective length of query: 188 effective length of database: 364,579 effective search space: 68540852 effective search space used: 68540852 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718802|ref|YP_003874334.1| tRNA pseudouridine 55 synthase [Spirochaeta thermophila DSM 6192] (288 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431292|ref|NP_147652.2| H/ACA RNA-protein complex componen... 71 3e-14 >gi|118431292|ref|NP_147652.2| H/ACA RNA-protein complex component Cbf5p [Aeropyrum pernix K1] Length = 354 Score = 71.2 bits (173), Expect = 3e-14 Identities = 62/201 (30%), Positives = 83/201 (41%), Gaps = 33/201 (16%) Query: 3 GILLCHKPPGIRSFXXXXXXXXXXXXXXXXXXXXXDRFAQGLLILLTGRCTRLTPIFHSL 62 G+++ KPPG S D G+L + R TR+ Sbjct: 57 GMIVVDKPPGPTSHEVVAWIKRMLGVSRAGHGGTLDPKVTGVLPVALERMTRIIGTVMHS 116 Query: 63 SKEYEAVIEFGKETDTLDPEGRIIQVGPVPEEKALRETLGRFLGTYEQIPPAYSALRVGG 122 SKEY V++ + PV E++ LRE L F G Q PP LR Sbjct: 117 SKEYVCVMQLHR---------------PVEEDR-LREVLKLFEGEIYQKPP----LRSSV 156 Query: 123 RRAHDLARRGEEPDLAPRRVEIYALSLLEWRPPYATVRVSCSGGTYIRALARDIGSSLGT 182 +RA L RRV + + LLE+ YA +RV C GTY+R L DIG LG Sbjct: 157 KRA-----------LRTRRV--FRIELLEYTGKYALLRVDCEAGTYMRKLCWDIGLVLGV 203 Query: 183 CAYVTELKRTAIGPIPSDGAV 203 A++ EL+R GP D + Sbjct: 204 GAHMRELRRIRTGPFSEDSGL 224 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 303,762 Number of Sequences: 1700 Number of extensions: 13765 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 1 length of query: 288 length of database: 492,079 effective HSP length: 76 effective length of query: 212 effective length of database: 362,879 effective search space: 76930348 effective search space used: 76930348 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718803|ref|YP_003874335.1| ribosome-binding factor A [Spirochaeta thermophila DSM 6192] (128 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 123,550 Number of Sequences: 1700 Number of extensions: 4458 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 128 length of database: 492,079 effective HSP length: 67 effective length of query: 61 effective length of database: 378,179 effective search space: 23068919 effective search space used: 23068919 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718804|ref|YP_003874336.1| translation initiation factor IF-2 [Spirochaeta thermophila DSM 6192] (781 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602026|ref|NP_148571.1| translation initiation factor IF-2 ... 147 1e-36 gi|14601403|ref|NP_147939.1| elongation factor EF-2 [Aeropyrum p... 57 2e-09 gi|14601666|ref|NP_148207.1| elongation factor 1-alpha [Aeropyru... 52 4e-08 gi|118431851|ref|NP_148568.2| translation initiation factor IF-2... 50 2e-07 >gi|14602026|ref|NP_148571.1| translation initiation factor IF-2 [Aeropyrum pernix K1] Length = 617 Score = 147 bits (370), Expect = 1e-36 Identities = 141/465 (30%), Positives = 204/465 (43%), Gaps = 99/465 (21%) Query: 280 RPRPPVVTVMGHVDHGKTKLLDAIRSANVAEGEYGGITQHIGA----------------- 322 R R P+V V+GHVDHGKT LLD IR VA E GGITQHIGA Sbjct: 13 RLRQPIVVVLGHVDHGKTTLLDKIRRTAVAAKEAGGITQHIGASIVPADVIEKIAEPLKK 72 Query: 323 -YQVELPQGKITFLDTPGHEAFTLMRARGAQVTDIVVLVVAANDGVMPQTVEALNHAKEA 381 V+L + F+DTPGHE F+ +R RG V D +LVV +G PQT EAL KE Sbjct: 73 VIPVKLVIPGLLFIDTPGHELFSNLRRRGGSVADFAILVVDIMEGFKPQTYEALELLKER 132 Query: 382 NVPIIVAINKVD-LP--DANPD-----------------------RVKQQLSEYGLIPE- 414 VP ++A NK+D +P NPD + ++ E GL E Sbjct: 133 RVPFLIAANKIDRIPGWKPNPDAPFIETIRRQDPKVREILEQRVYEIVGKMYEAGLPAEL 192 Query: 415 -----EWGGNTIYCEVSALKKQGX-XXXXXXXXXXXXXXXXKANYS-CRAEGKILESKIE 467 ++ VSA +G + Y+ A+G +LE K Sbjct: 193 FTRIKDFRRKIAIVPVSARTGEGIPELLAVLAGLTQTYLKERLRYAEGPAKGVVLEVKEM 252 Query: 468 HGRGIVATVLVQRGTLRIGDPFVAGVYSG----KVRAM-----FDEWGNREEE------- 511 G G V ++ G L+ D V G G +VRA+ + +RE Sbjct: 253 QGFGTVVDAVIYDGVLKKEDIIVVGGREGPIVTRVRALLMPAPLQDIRSREARFVQVDRV 312 Query: 512 -ATPSTPVEVLGFDGLPEAGDPFQVTESEKHAREVASKRQELKKLEEARNVQKVTLDNLY 570 A + G D + AG P ESE+ AR++ Q +++EE R Sbjct: 313 YAAAGVRIAAPGLDDV-IAGSPIYAAESEEEARKLMEAVQ--REIEELR----------- 358 Query: 571 QKIQEGEVQDLKIIIKADVHGSAEAIRTALERLSTEEIRVRIIHAAAGAVNESDVRLASA 630 +++ +++KAD G+ EA+ AL R + VR+ A G V+ SDV A+ Sbjct: 359 -----FRTENIGVVVKADTLGTLEALVEALRR---RGVPVRL--ADIGPVSRSDVLDAAV 408 Query: 631 SN------AIIVAFNVRPTSQASTLAEKEKVEIRRYTIIYEVIDD 669 + +++AFNV+ +A A + V+I R ++IY++I+D Sbjct: 409 TRKIDPYLGVVLAFNVKVLPEAEEEASRAGVKIFRESMIYKLIED 453 >gi|14601403|ref|NP_147939.1| elongation factor EF-2 [Aeropyrum pernix K1] Length = 736 Score = 57.0 bits (136), Expect = 2e-09 Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 32/172 (18%) Query: 286 VTVMGHVDHGKTKLLDAI-RSANVAEGEYGGITQHIGAYQVELPQG-------------- 330 + ++ HVDHGKT D++ +A + G + VE +G Sbjct: 24 IGIIAHVDHGKTTTSDSLLAAAGIISERIAGEALVLDYLNVEKQRGITVKSANVSLYHEY 83 Query: 331 -----KITFLDTPGHEAFTLMRARGAQVTDIVVLVVAANDGVMPQTVEALNHAKEANVPI 385 I +DTPGH F+ R +V D ++VV A +GVM QT + A E V Sbjct: 84 EGKPYVINLIDTPGHVDFSGKVTRSLRVLDGAIVVVDAVEGVMTQTETVIRQALEERVRP 143 Query: 386 IVAINKVD-------LPDANPDRVKQQLSEYGLIPEEWGGNTIYCEVSALKK 430 I+ INKVD LP P++++Q+ E +I E +Y E KK Sbjct: 144 ILFINKVDRLIKELKLP---PEKIQQRFVE--IIKEVNNLIDLYAEPEFRKK 190 >gi|14601666|ref|NP_148207.1| elongation factor 1-alpha [Aeropyrum pernix K1] Length = 437 Score = 52.4 bits (124), Expect = 4e-08 Identities = 45/159 (28%), Positives = 66/159 (41%), Gaps = 39/159 (24%) Query: 286 VTVMGHVDHGKTKLL---------------------------DAIRSA----NVAEGEYG 314 + V+GHVDHGK+ L+ ++ + A + E Sbjct: 9 LVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERER 68 Query: 315 GITQHIGAYQVELPQGKITFLDTPGHEAFTLMRARGAQVTDIVVLVVAANDGVMP----- 369 GIT + + E + T +D PGH F GA D +LVV+A G Sbjct: 69 GITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMST 128 Query: 370 --QTVEALNHAKEANV-PIIVAINKVDLPDANPDRVKQQ 405 QT E L A+ + IIVA+NK+D PD N D+ + + Sbjct: 129 EGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYE 167 >gi|118431851|ref|NP_148568.2| translation initiation factor IF-2 [Aeropyrum pernix K1] Length = 414 Score = 50.1 bits (118), Expect = 2e-07 Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 43/182 (23%) Query: 286 VTVMGHVDHGKTKLLDAIRSA---NVAEGEYGGITQHIGAYQVEL--------------- 327 + V+GHVDHGKT L+ A+ +E G+T +G E+ Sbjct: 13 IGVVGHVDHGKTTLVQALTGVWTMRHSEEIRRGMTIKLGYADGEVWECEGCGFPERFSPE 72 Query: 328 ------PQG------KITFLDTPGHEAFTLMRARGAQVTDIVVLVVAANDGV-MPQTVEA 374 PQ +++++D PGHE GA + D +LVVAAN+ PQT E Sbjct: 73 PVCECDPQASASLRRRVSYVDAPGHEILMATMLSGAALMDGALLVVAANEPCPQPQTKEH 132 Query: 375 LNHAKEANVP-IIVAINKVDLPDANPDRVKQQLSEY-----GLIPEEWGGNTIYCEVSAL 428 L + + I++ NKVD+ + +R K+ E G I E G+ I VSAL Sbjct: 133 LVALEIIGIKNIVIVQNKVDV--VSRERAKESYQEILNFIKGTIAE---GSPI-IPVSAL 186 Query: 429 KK 430 K+ Sbjct: 187 KR 188 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.132 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 635,163 Number of Sequences: 1700 Number of extensions: 25313 Number of successful extensions: 86 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 9 length of query: 781 length of database: 492,079 effective HSP length: 84 effective length of query: 697 effective length of database: 349,279 effective search space: 243447463 effective search space used: 243447463 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718805|ref|YP_003874337.1| hypothetical protein STHERM_c11190 [Spirochaeta thermophila DSM 6192] (488 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601671|ref|NP_148212.1| transcription elongation factor Nus... 44 9e-06 >gi|14601671|ref|NP_148212.1| transcription elongation factor NusA-like protein [Aeropyrum pernix K1] Length = 144 Score = 43.9 bits (102), Expect = 9e-06 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query: 250 GACVGVKGVRIQALVNELEGERVDVIRYDPDPVAFIKNSLSPAEVEQVIILDRN-KKHAL 308 G +G +G R+ L+ E G+ ++V+ Y D +KN ++E + + +RN K + Sbjct: 48 GRAIG-RGGRLIKLLREALGKNIEVVEYSSDLERIVKNLFPGVKIESINVRERNGVKQVV 106 Query: 309 AVVKDNQLSLAIGKQGLNVRLANRLV 334 V ++ AIGK G NV+ A RLV Sbjct: 107 IKVSEDDKGAAIGKGGKNVKRA-RLV 131 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.136 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 462,905 Number of Sequences: 1700 Number of extensions: 20919 Number of successful extensions: 90 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 88 Number of HSP's gapped (non-prelim): 2 length of query: 488 length of database: 492,079 effective HSP length: 80 effective length of query: 408 effective length of database: 356,079 effective search space: 145280232 effective search space used: 145280232 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718806|ref|YP_003874338.1| hypothetical protein STHERM_c11200 [Spirochaeta thermophila DSM 6192] (182 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 181,886 Number of Sequences: 1700 Number of extensions: 7334 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 182 length of database: 492,079 effective HSP length: 71 effective length of query: 111 effective length of database: 371,379 effective search space: 41223069 effective search space used: 41223069 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718807|ref|YP_003874339.1| hypothetical protein STHERM_c11210 [Spirochaeta thermophila DSM 6192] (613 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 538,292 Number of Sequences: 1700 Number of extensions: 22228 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 0 length of query: 613 length of database: 492,079 effective HSP length: 82 effective length of query: 531 effective length of database: 352,679 effective search space: 187272549 effective search space used: 187272549 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718808|ref|YP_003874340.1| hypothetical protein STHERM_c11220 [Spirochaeta thermophila DSM 6192] (236 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.142 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 203,200 Number of Sequences: 1700 Number of extensions: 7118 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 236 length of database: 492,079 effective HSP length: 74 effective length of query: 162 effective length of database: 366,279 effective search space: 59337198 effective search space used: 59337198 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718809|ref|YP_003874341.1| DNA mismatch repair protein MutS [Spirochaeta thermophila DSM 6192] (867 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 834,262 Number of Sequences: 1700 Number of extensions: 37094 Number of successful extensions: 148 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 148 Number of HSP's gapped (non-prelim): 0 length of query: 867 length of database: 492,079 effective HSP length: 85 effective length of query: 782 effective length of database: 347,579 effective search space: 271806778 effective search space used: 271806778 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718810|ref|YP_003874342.1| hypothetical protein STHERM_c11240 [Spirochaeta thermophila DSM 6192] (174 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.134 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 134,958 Number of Sequences: 1700 Number of extensions: 4324 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 174 length of database: 492,079 effective HSP length: 71 effective length of query: 103 effective length of database: 371,379 effective search space: 38252037 effective search space used: 38252037 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718811|ref|YP_003874343.1| surface antigen [Spirochaeta thermophila DSM 6192] (862 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 914,910 Number of Sequences: 1700 Number of extensions: 43771 Number of successful extensions: 83 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83 Number of HSP's gapped (non-prelim): 0 length of query: 862 length of database: 492,079 effective HSP length: 85 effective length of query: 777 effective length of database: 347,579 effective search space: 270068883 effective search space used: 270068883 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718812|ref|YP_003874344.1| hypothetical protein STHERM_c11270 [Spirochaeta thermophila DSM 6192] (1456 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,395,596 Number of Sequences: 1700 Number of extensions: 61380 Number of successful extensions: 137 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 137 Number of HSP's gapped (non-prelim): 0 length of query: 1456 length of database: 492,079 effective HSP length: 89 effective length of query: 1367 effective length of database: 340,779 effective search space: 465844893 effective search space used: 465844893 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 98 (42.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718813|ref|YP_003874345.1| thymidylate kinase [Spirochaeta thermophila DSM 6192] (242 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601836|ref|NP_148377.1| thymidylate kinase [Aeropyrum perni... 122 6e-30 >gi|14601836|ref|NP_148377.1| thymidylate kinase [Aeropyrum pernix K1] Length = 208 Score = 122 bits (307), Expect = 6e-30 Identities = 77/184 (41%), Positives = 109/184 (59%), Gaps = 6/184 (3%) Query: 42 RFVVFEGIDGAGTTTQLGKVASSLKGRGHTLWETREPTDGPVGTFIRECLASGLSFPASV 101 R V EGIDG+G +T + + L G G +EPT+GPVG IR L S + + Sbjct: 2 RIVALEGIDGSGVSTHSRLLHARLAGAGVKSCLWKEPTEGPVGRLIRGFLRSTEGVDSDL 61 Query: 102 YAYLFAADRDLHVFG-EDGVMVRVGRG-EIVLCDRYLHSSLAYQSDSAHTRELVEDLNRR 159 A LFAADR ++G GV+ R G E+++ DRY +SSLAYQ + E V+ +NR+ Sbjct: 62 MALLFAADR---LWGLRLGVVERCGGSPEVLVVDRYKYSSLAYQGVGSGL-EWVDAVNRK 117 Query: 160 FPLPEVVIYLDTPVEECLRRLSSRPRKDLFEQREVLMNVASRYREVLRTYEAEGGKVLYV 219 P E+++Y+D P E LRR+++R R+++FE E L V S Y EVLR A G KV+ V Sbjct: 118 APEAEILVYIDVPTEVALRRITARERREVFETPEFLERVKSMYEEVLRLARARGVKVIRV 177 Query: 220 DGTQ 223 +G + Sbjct: 178 EGVR 181 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 245,387 Number of Sequences: 1700 Number of extensions: 10993 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 1 length of query: 242 length of database: 492,079 effective HSP length: 74 effective length of query: 168 effective length of database: 366,279 effective search space: 61534872 effective search space used: 61534872 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718814|ref|YP_003874346.1| hypothetical protein STHERM_c11280 [Spirochaeta thermophila DSM 6192] (203 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.138 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 180,102 Number of Sequences: 1700 Number of extensions: 6536 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 203 length of database: 492,079 effective HSP length: 73 effective length of query: 130 effective length of database: 367,979 effective search space: 47837270 effective search space used: 47837270 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718815|ref|YP_003874347.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA [Spirochaeta thermophila DSM 6192] (351 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 386,542 Number of Sequences: 1700 Number of extensions: 18214 Number of successful extensions: 68 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 0 length of query: 351 length of database: 492,079 effective HSP length: 78 effective length of query: 273 effective length of database: 359,479 effective search space: 98137767 effective search space used: 98137767 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718816|ref|YP_003874348.1| holliday junction ATP-dependent DNA helicase RuvB [Spirochaeta thermophila DSM 6192] (342 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431491|ref|NP_147997.2| replication factor C small subunit... 64 7e-12 gi|14601365|ref|NP_147901.1| cell division protein CDC48 [Aeropy... 47 9e-07 >gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1] Length = 325 Score = 63.5 bits (153), Expect = 7e-12 Identities = 63/229 (27%), Positives = 97/229 (42%), Gaps = 37/229 (16%) Query: 17 ERLRPLSLSEFQGKEEIKENLRVFIHAARQRGEALDHVFLSGPPGLGKTTLGSIIAHEL- 75 E+ RP SL + ++ + E L+ F+ +QR + H+ +GPPG GKTT +AH+L Sbjct: 11 EKYRPRSLDDIVDQKHVVERLKQFV---KQRN--MPHLLFAGPPGTGKTTAAHALAHDLF 65 Query: 76 -------GVELRITSAPAL----EKPKDLAGILTTLS-PRSVLFIDEIHRLKPAIEEMLY 123 +EL + + EK K+ A T P ++ +DE + ++ L Sbjct: 66 GENYRQYMLELNASDERGINVIREKVKEFARSRTPPEIPFKIVLLDEADNMTSDAQQALR 125 Query: 124 VAMEDYVIDWIIGQGPSARTVRIPVPPFTLVGATTKAGKLATPLVSRFGITFHFNLYEKE 183 ME Y V F L+ K+ P+ SR F F K+ Sbjct: 126 RLMELY----------------SSVTRFILI--ANYPSKIIDPIQSRCAF-FRFQPLSKQ 166 Query: 184 DIIKVLRRSARILGLQVEEPAFDLLSSCSRGTPRIANRMLRRARDFAEV 232 D+I+ LR A G+ EE A D + S G R A +L+ A +V Sbjct: 167 DVIERLRYIAENEGVDYEEEALDAIYEISEGDMRKAINVLQAASYLGKV 215 >gi|14601365|ref|NP_147901.1| cell division protein CDC48 [Aeropyrum pernix K1] Length = 726 Score = 46.6 bits (109), Expect = 9e-07 Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 21/133 (15%) Query: 10 REEDAQEE--RLR---PLSLSEFQGKEEIKENLRVFIHAARQRGEALDH--------VFL 56 RE+ +EE RLR ++ + EE KE +R + + E H + L Sbjct: 164 REKPVREEIERLRGVPKVTWEDIGDLEEAKERIREIVELPMKHPEIFKHLGIEPPKGILL 223 Query: 57 SGPPGLGKTTLGSIIAHELGVELRITSAPAL------EKPKDLAGILTTLSPR--SVLFI 108 GPPG GKT L +A+E+G + P + E + L I S++FI Sbjct: 224 YGPPGTGKTLLAKALANEIGAYFISINGPEIMSKYYGESEQRLREIFKEAEENAPSIIFI 283 Query: 109 DEIHRLKPAIEEM 121 DEI + P EE+ Sbjct: 284 DEIDAIAPKREEV 296 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 383,398 Number of Sequences: 1700 Number of extensions: 18918 Number of successful extensions: 118 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 115 Number of HSP's gapped (non-prelim): 3 length of query: 342 length of database: 492,079 effective HSP length: 77 effective length of query: 265 effective length of database: 361,179 effective search space: 95712435 effective search space used: 95712435 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718817|ref|YP_003874349.1| Holliday junction ATP-dependent DNA helicase RuvA [Spirochaeta thermophila DSM 6192] (197 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.143 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 195,452 Number of Sequences: 1700 Number of extensions: 8392 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 197 length of database: 492,079 effective HSP length: 72 effective length of query: 125 effective length of database: 369,679 effective search space: 46209875 effective search space used: 46209875 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718818|ref|YP_003874350.1| crossover junction endodeoxyribonuclease ruvC [Spirochaeta thermophila DSM 6192] (169 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 166,013 Number of Sequences: 1700 Number of extensions: 6242 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 169 length of database: 492,079 effective HSP length: 71 effective length of query: 98 effective length of database: 371,379 effective search space: 36395142 effective search space used: 36395142 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718819|ref|YP_003874351.1| hypothetical protein STHERM_c11330 [Spirochaeta thermophila DSM 6192] (246 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.311 0.130 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 233,488 Number of Sequences: 1700 Number of extensions: 9535 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 246 length of database: 492,079 effective HSP length: 74 effective length of query: 172 effective length of database: 366,279 effective search space: 62999988 effective search space used: 62999988 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718820|ref|YP_003874352.1| oxygen-independent coproporphyrinogen III oxidase [Spirochaeta thermophila DSM 6192] (410 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.143 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 424,664 Number of Sequences: 1700 Number of extensions: 19862 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 0 length of query: 410 length of database: 492,079 effective HSP length: 79 effective length of query: 331 effective length of database: 357,779 effective search space: 118424849 effective search space used: 118424849 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718821|ref|YP_003874353.1| hypothetical protein STHERM_c11350 [Spirochaeta thermophila DSM 6192] (238 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.145 0.482 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 300,962 Number of Sequences: 1700 Number of extensions: 15781 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 238 length of database: 492,079 effective HSP length: 74 effective length of query: 164 effective length of database: 366,279 effective search space: 60069756 effective search space used: 60069756 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718822|ref|YP_003874354.1| signal peptidase I [Spirochaeta thermophila DSM 6192] (335 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 359,917 Number of Sequences: 1700 Number of extensions: 17340 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 0 length of query: 335 length of database: 492,079 effective HSP length: 77 effective length of query: 258 effective length of database: 361,179 effective search space: 93184182 effective search space used: 93184182 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718823|ref|YP_003874355.1| hypothetical protein STHERM_c11370 [Spirochaeta thermophila DSM 6192] (550 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 580,044 Number of Sequences: 1700 Number of extensions: 25956 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 550 length of database: 492,079 effective HSP length: 81 effective length of query: 469 effective length of database: 354,379 effective search space: 166203751 effective search space used: 166203751 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718824|ref|YP_003874356.1| SsrA-binding protein [Spirochaeta thermophila DSM 6192] (153 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 153,062 Number of Sequences: 1700 Number of extensions: 6462 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 153 length of database: 492,079 effective HSP length: 70 effective length of query: 83 effective length of database: 373,079 effective search space: 30965557 effective search space used: 30965557 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718825|ref|YP_003874357.1| hypothetical protein STHERM_c11390 [Spirochaeta thermophila DSM 6192] (194 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 164,829 Number of Sequences: 1700 Number of extensions: 5797 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 194 length of database: 492,079 effective HSP length: 72 effective length of query: 122 effective length of database: 369,679 effective search space: 45100838 effective search space used: 45100838 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718826|ref|YP_003874358.1| redox-active disulfide protein 2 [Spirochaeta thermophila DSM 6192] (80 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.132 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,825 Number of Sequences: 1700 Number of extensions: 1269 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 80 length of database: 492,079 effective HSP length: 50 effective length of query: 30 effective length of database: 407,079 effective search space: 12212370 effective search space used: 12212370 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718827|ref|YP_003874359.1| transporter [Spirochaeta thermophila DSM 6192] (433 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.141 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 433,533 Number of Sequences: 1700 Number of extensions: 19489 Number of successful extensions: 101 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101 Number of HSP's gapped (non-prelim): 0 length of query: 433 length of database: 492,079 effective HSP length: 79 effective length of query: 354 effective length of database: 357,779 effective search space: 126653766 effective search space used: 126653766 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718828|ref|YP_003874360.1| transcriptional regulator [Spirochaeta thermophila DSM 6192] (116 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 117,545 Number of Sequences: 1700 Number of extensions: 4523 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 116 length of database: 492,079 effective HSP length: 66 effective length of query: 50 effective length of database: 379,879 effective search space: 18993950 effective search space used: 18993950 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718829|ref|YP_003874361.1| OmpA family protein [Spirochaeta thermophila DSM 6192] (414 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.142 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 456,145 Number of Sequences: 1700 Number of extensions: 22667 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61 Number of HSP's gapped (non-prelim): 0 length of query: 414 length of database: 492,079 effective HSP length: 79 effective length of query: 335 effective length of database: 357,779 effective search space: 119855965 effective search space used: 119855965 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718830|ref|YP_003874362.1| NUDIX hydrolase [Spirochaeta thermophila DSM 6192] (188 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 199,494 Number of Sequences: 1700 Number of extensions: 8881 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 188 length of database: 492,079 effective HSP length: 72 effective length of query: 116 effective length of database: 369,679 effective search space: 42882764 effective search space used: 42882764 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718831|ref|YP_003874363.1| hypothetical protein STHERM_c11450 [Spirochaeta thermophila DSM 6192] (375 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.140 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 422,895 Number of Sequences: 1700 Number of extensions: 20978 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 375 length of database: 492,079 effective HSP length: 78 effective length of query: 297 effective length of database: 359,479 effective search space: 106765263 effective search space used: 106765263 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718832|ref|YP_003874364.1| hypothetical protein STHERM_c11460 [Spirochaeta thermophila DSM 6192] (161 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 163,183 Number of Sequences: 1700 Number of extensions: 6596 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 161 length of database: 492,079 effective HSP length: 70 effective length of query: 91 effective length of database: 373,079 effective search space: 33950189 effective search space used: 33950189 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718833|ref|YP_003874365.1| hypothetical protein STHERM_c11490 [Spirochaeta thermophila DSM 6192] (98 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.137 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,654 Number of Sequences: 1700 Number of extensions: 3234 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 98 length of database: 492,079 effective HSP length: 63 effective length of query: 35 effective length of database: 384,979 effective search space: 13474265 effective search space used: 13474265 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718834|ref|YP_003874366.1| hypothetical protein STHERM_c11500 [Spirochaeta thermophila DSM 6192] (501 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 433,141 Number of Sequences: 1700 Number of extensions: 17553 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 501 length of database: 492,079 effective HSP length: 81 effective length of query: 420 effective length of database: 354,379 effective search space: 148839180 effective search space used: 148839180 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718835|ref|YP_003874367.1| hypothetical protein STHERM_c11510 [Spirochaeta thermophila DSM 6192] (505 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 487,016 Number of Sequences: 1700 Number of extensions: 19741 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 505 length of database: 492,079 effective HSP length: 81 effective length of query: 424 effective length of database: 354,379 effective search space: 150256696 effective search space used: 150256696 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718836|ref|YP_003874368.1| GTP-binding protein lepA [Spirochaeta thermophila DSM 6192] (604 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601403|ref|NP_147939.1| elongation factor EF-2 [Aeropyrum p... 130 7e-32 gi|14601666|ref|NP_148207.1| elongation factor 1-alpha [Aeropyru... 100 8e-23 gi|14602026|ref|NP_148571.1| translation initiation factor IF-2 ... 50 2e-07 >gi|14601403|ref|NP_147939.1| elongation factor EF-2 [Aeropyrum pernix K1] Length = 736 Score = 130 bits (328), Expect = 7e-32 Identities = 139/520 (26%), Positives = 223/520 (42%), Gaps = 106/520 (20%) Query: 8 LRNFCIIAHIDHGKSTLADRFIQRAHIVDDREFHDQM-LDTMDIERERGITIKSQTVNLP 66 +RN IIAH+DHGK+T +D + A I+ +R + + LD +++E++RGIT+KS V+L Sbjct: 21 IRNIGIIAHVDHGKTTTSDSLLAAAGIISERIAGEALVLDYLNVEKQRGITVKSANVSL- 79 Query: 67 YEASDGTLYRFNLVDTPGHVDFSYEVSRA----------ISACEGALLLVDAT--QGVEA 114 Y +G Y NL+DTPGHVDFS +V+R+ + A EG + + Q +E Sbjct: 80 YHEYEGKPYVINLIDTPGHVDFSGKVTRSLRVLDGAIVVVDAVEGVMTQTETVIRQALEE 139 Query: 115 QTLANMYMALEYNL----------------EIIPVINK-IDLPAADVEGVKEQIEHELGL 157 + +++ L EII +N IDL A K +++ G+ Sbjct: 140 RVRPILFINKVDRLIKELKLPPEKIQQRFVEIIKEVNNLIDLYAEPEFRKKWKLDPNAGM 199 Query: 158 PA---------------------------------DEVVSISAKMGTGLERLYEAIVDRI 184 A + V +S KM E L + ++ + Sbjct: 200 VAFGSAKDKWGISVPQVKKKGITFREIIQAYEKGKEAVAELSKKMPLH-ETLLDMVIKFV 258 Query: 185 PPP-------------------------SGDPKGPLKALVFDSHYDPYRGVVLYIRVFEG 219 P P + DP GPL + D + G+V RVF G Sbjct: 259 PNPREAQRYRIPKIWKGDINSEIGQAMLNADPDGPLVFFINDVRIEK-AGLVATGRVFSG 317 Query: 220 SVGRGDEVLLMSSGARYGVEEVGILRMRGLPVDR-LEAGDIGYLIAGVKTIRDVRVGDTI 278 ++ G+EV L+++G + + +V I V + + AG+IG V DVR G+T+ Sbjct: 318 TLRSGEEVYLLNAGKKSRLLQVSIYMGPFREVTKEIPAGNIG----AVMGFEDVRAGETV 373 Query: 279 TSAA-RPAAEAVPGFRAV-KPVVYSSIFPVDSNDYEELGKALEKLVLNDASLVYEKTSSS 336 S A R V +PVV ++ PV D ++ +AL KL + D +LV + + Sbjct: 374 VSLGYEENAAPFESLRYVSEPVVTIAVEPVKIQDLPKMIEALRKLTIEDPNLVVKINEET 433 Query: 337 ALGFGYKCGFLGLLHLEVVQERLEREFGLSVVFTAPSVQYRVRLR-NGEVVTIETPDE-- 393 Y +G LHLE+ L +FG+ V + P V YR +R V ++P++ Sbjct: 434 G---EYLLSGMGPLHLEIALTMLREKFGVEVKASPPIVVYRETVRQQSRVFEGKSPNKHN 490 Query: 394 --YPDPSRIEEVEEPYIKATIITPDEYVGPIMKLCMDKRG 431 Y + E I+ +T D+ ++ DK G Sbjct: 491 KLYISVEPLNEETITLIQNGAVTEDQDPKDRARILADKAG 530 >gi|14601666|ref|NP_148207.1| elongation factor 1-alpha [Aeropyrum pernix K1] Length = 437 Score = 100 bits (250), Expect = 8e-23 Identities = 97/326 (29%), Positives = 147/326 (45%), Gaps = 57/326 (17%) Query: 10 NFCIIAHIDHGKSTLADRFIQRAHIVDDR---EFHDQ-------------MLDTMDIERE 53 N +I H+DHGKSTL + R ++++ E +Q +LD M ERE Sbjct: 8 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 67 Query: 54 RGITIKSQTVNLPYEASDGTLYRFNLVDTPGHVDFSYEVSRAISACEGALLLVDATQG-- 111 RGITI +L + + Y F ++D PGH DF + S + A+L+V A +G Sbjct: 68 RGITI-----DLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEF 122 Query: 112 -----VEAQTLANMYMALEYNLE-IIPVINKIDLPAAD--------VEGVKEQIEHELGL 157 E QT ++ +A +E II +NK+D P + V V ++ LG Sbjct: 123 EAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGY 182 Query: 158 PADEV--VSISAKMGTGL-ER-----------LYEAIVDRIPPPSGDPKGPLKALVFDSH 203 D++ + +SA G L ER L EA+ D++ PP+ PL+ V + + Sbjct: 183 QVDKIPFIPVSAWKGDNLIERSPNMPWYNGPTLVEAL-DQLQPPAKPVDKPLRIPVQNVY 241 Query: 204 YDPYRGVVLYIRVFEGSVGRGDEVLLMSSGARYGVEEVGILRMRGLPVDRLEAGD-IGYL 262 P G V RV G + GD+V+ M G V EV + M + + E GD IG+ Sbjct: 242 SIPGAGTVPVGRVETGVLRVGDKVVFMPPGV---VGEVRSIEMHYQQLQQAEPGDNIGFA 298 Query: 263 IAGVKTIRDVRVGDTITSAARPAAEA 288 + GV D++ GD +P A Sbjct: 299 VRGVSK-SDIKRGDVAGHLDKPPTVA 323 >gi|14602026|ref|NP_148571.1| translation initiation factor IF-2 [Aeropyrum pernix K1] Length = 617 Score = 49.7 bits (117), Expect = 2e-07 Identities = 79/343 (23%), Positives = 134/343 (39%), Gaps = 79/343 (23%) Query: 13 IIAHIDHGKSTLADRFIQRAHIVDDREFHDQMLDTMDIERE--RGITIKSQTVNLPYEAS 70 ++ H+DHGK+TL D+ + A + Q + + + I + V Sbjct: 21 VLGHVDHGKTTLLDKIRRTAVAAKEAGGITQHIGASIVPADVIEKIAEPLKKVIPVKLVI 80 Query: 71 DGTLYRFNLVDTPGHVDFSYEVSRAISACEGALLLVDATQGVEAQTLANMYMALEYNLEI 130 G L+ +DTPGH FS R S + A+L+VD +G + QT + + E + Sbjct: 81 PGLLF----IDTPGHELFSNLRRRGGSVADFAILVVDIMEGFKPQTYEALELLKERRVPF 136 Query: 131 IPVINKID-LP-------AADVEGVKEQIE-----------------HELGLPAD----- 160 + NKID +P A +E ++ Q +E GLPA+ Sbjct: 137 LIAANKIDRIPGWKPNPDAPFIETIRRQDPKVREILEQRVYEIVGKMYEAGLPAELFTRI 196 Query: 161 -------EVVSISAKMGTGLERLYEAIVDRIPPPSGD----PKGPLKALVFDSHYDPYRG 209 +V +SA+ G G+ L + + +GP K +V + G Sbjct: 197 KDFRRKIAIVPVSARTGEGIPELLAVLAGLTQTYLKERLRYAEGPAKGVVLEVKEMQGFG 256 Query: 210 VVLYIRVFEGSVGRGDEVLLMSSGARYG--------------VEEVGILRMRGLPVDRLE 255 V+ +++G + + D +++ G R G ++++ R + VDR+ Sbjct: 257 TVVDAVIYDGVLKKEDIIVV---GGREGPIVTRVRALLMPAPLQDIRSREARFVQVDRV- 312 Query: 256 AGDIGYLIAGVKT----IRDVRVGDTITSA-----ARPAAEAV 289 Y AGV+ + DV G I +A AR EAV Sbjct: 313 -----YAAAGVRIAAPGLDDVIAGSPIYAAESEEEARKLMEAV 350 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 636,693 Number of Sequences: 1700 Number of extensions: 31494 Number of successful extensions: 133 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 123 Number of HSP's gapped (non-prelim): 6 length of query: 604 length of database: 492,079 effective HSP length: 82 effective length of query: 522 effective length of database: 352,679 effective search space: 184098438 effective search space used: 184098438 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718837|ref|YP_003874369.1| hypothetical protein STHERM_c11530 [Spirochaeta thermophila DSM 6192] (632 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 647,799 Number of Sequences: 1700 Number of extensions: 30679 Number of successful extensions: 96 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96 Number of HSP's gapped (non-prelim): 0 length of query: 632 length of database: 492,079 effective HSP length: 83 effective length of query: 549 effective length of database: 350,979 effective search space: 192687471 effective search space used: 192687471 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718838|ref|YP_003874370.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (133 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 143,199 Number of Sequences: 1700 Number of extensions: 5946 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 133 length of database: 492,079 effective HSP length: 68 effective length of query: 65 effective length of database: 376,479 effective search space: 24471135 effective search space used: 24471135 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718839|ref|YP_003874371.1| hypothetical protein STHERM_c11560 [Spirochaeta thermophila DSM 6192] (306 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.461 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 322,296 Number of Sequences: 1700 Number of extensions: 14225 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 306 length of database: 492,079 effective HSP length: 77 effective length of query: 229 effective length of database: 361,179 effective search space: 82709991 effective search space used: 82709991 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718840|ref|YP_003874372.1| hypothetical protein STHERM_c11580 [Spirochaeta thermophila DSM 6192] (628 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 636,812 Number of Sequences: 1700 Number of extensions: 29952 Number of successful extensions: 95 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95 Number of HSP's gapped (non-prelim): 0 length of query: 628 length of database: 492,079 effective HSP length: 82 effective length of query: 546 effective length of database: 352,679 effective search space: 192562734 effective search space used: 192562734 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718841|ref|YP_003874373.1| elongation factor G 1 [Spirochaeta thermophila DSM 6192] (682 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601403|ref|NP_147939.1| elongation factor EF-2 [Aeropyrum p... 251 3e-68 gi|14601666|ref|NP_148207.1| elongation factor 1-alpha [Aeropyru... 56 2e-09 >gi|14601403|ref|NP_147939.1| elongation factor EF-2 [Aeropyrum pernix K1] Length = 736 Score = 251 bits (642), Expect = 3e-68 Identities = 212/739 (28%), Positives = 351/739 (47%), Gaps = 116/739 (15%) Query: 5 RIRNIGIIAHIDAGKTTTTERILYYTGKTHRIGEVDDGQA-TMDWMEQEQNRGITITAAA 63 +IRNIGIIAH+D GKTTT++ +L G I E G+A +D++ E+ RGIT+ +A Sbjct: 20 QIRNIGIIAHVDHGKTTTSDSLLAAAGI---ISERIAGEALVLDYLNVEKQRGITVKSAN 76 Query: 64 TTCFW----KDHQINIIDTPGHVDFTVEVERALRVLDGAVVIFCAVGGVEPQSETVWHQA 119 + + K + IN+IDTPGHVDF+ +V R+LRVLDGA+V+ AV GV Q+ETV QA Sbjct: 77 VSLYHEYEGKPYVINLIDTPGHVDFSGKVTRSLRVLDGAIVVVDAVEGVMTQTETVIRQA 136 Query: 120 DTYGVPRIAYVNKMDRMGADFFAVLEEMEKKLGAHPVPLQIPVGKEQSFRGVIDLITMRM 179 V I ++NK+DR+ + E+++++ + + KE + +IDL Sbjct: 137 LEERVRPILFINKVDRLIKELKLPPEKIQQRF--------VEIIKEVN--NLIDLYAEPE 186 Query: 180 I--EWNQEVQGAEYHY--------LPIPEDMEEMAAAWRERLLDSLSTYSDRITELFLEG 229 +W + + + +P+ +++ +RE I + + +G Sbjct: 187 FRKKWKLDPNAGMVAFGSAKDKWGISVPQ-VKKKGITFRE------------IIQAYEKG 233 Query: 230 KEIPEDLILRTIRSCTLARQITPVFCGSSLRNMGVQPLLDGVISYLPSPADLPPIKAYHV 289 KE +L + P+ + LLD VI ++P+P + + Y + Sbjct: 234 KEAVAELSKKM-----------PLH----------ETLLDMVIKFVPNPREA---QRYRI 269 Query: 290 KKEKEVEIPQEESSQPLG------LIFKIHADR--DAGNLCFVRMYAGSIKTGTTVYNVA 341 K + +I E L L+F I+ R AG + R+++G++++G VY + Sbjct: 270 PKIWKGDINSEIGQAMLNADPDGPLVFFINDVRIEKAGLVATGRVFSGTLRSGEEVYLLN 329 Query: 342 KKKRERITRIFRMHANRTEPLDTLRAGDIGVVVGFKLAQTGDTVSS----EGQPVLLERM 397 K+ R+ ++ E + AG+IG V+GF+ + G+TV S E Sbjct: 330 AGKKSRLLQVSIYMGPFREVTKEIPAGNIGAVMGFEDVRAGETVVSLGYEENAAPFESLR 389 Query: 398 HLPEPVISISVEPKTLSDRKKLLDTLSVLTTEDPSLAMKEDEETGEILLSGMGELHLEVV 457 ++ EPV++I+VEP + D K+++ L LT EDP+L +K +EETGE LLSGMG LHLE+ Sbjct: 390 YVSEPVVTIAVEPVKIQDLPKMIEALRKLTIEDPNLVVKINEETGEYLLSGMGPLHLEIA 449 Query: 458 VTRIKDEFGMDVRTGKPRVTYRETITREATVTE-----TFDRIIGGKE----------QR 502 +T ++++FG++V+ P V YRET+ +++ V E +++ E Q Sbjct: 450 LTMLREKFGVEVKASPPIVVYRETVRQQSRVFEGKSPNKHNKLYISVEPLNEETITLIQN 509 Query: 503 ATVTIAVRPRERG----------------------TGNRFVSQVRGNRIPEEILEAIRRS 540 VT P++R N FV + G + E+ + I Sbjct: 510 GAVTEDQDPKDRARILADKAGWDYNEARKIWAIDENINVFVDKTAGVQYLREVKDTIIAG 569 Query: 541 VEASFTGGILLGYPLVDVEAELRE--VEFDPETGTXXXXXXXXXXXXXXXCREAAPVLLE 598 + G L P+ V+ L + + DP + P LLE Sbjct: 570 FRLALKEGPLAAEPVRGVKVVLHDAVIHEDPVHRGPGQLYPAVRNAIWAGILDGRPTLLE 629 Query: 599 PIMRIVVITPSEFLGEVVNQLSGRGGVIQGIESRGTVEEIHAQAPLERMFGYSTALRSVT 658 P+ ++ + P E+L + L+ + G I +E+ G + I A P+ F + LRS T Sbjct: 630 PLQKLDIRAPMEYLSNITAVLTRKRGRIINVETTGVMARIIAAIPVAESFDLAGELRSAT 689 Query: 659 QGRASFSMEFSHFAPKEEQ 677 GRA + +EF +AP +Q Sbjct: 690 AGRAFWGVEFYGWAPVPDQ 708 >gi|14601666|ref|NP_148207.1| elongation factor 1-alpha [Aeropyrum pernix K1] Length = 437 Score = 56.2 bits (134), Expect = 2e-09 Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 29/174 (16%) Query: 8 NIGIIAHIDAGKTTTTERILYYTG--KTHRIGEVDDGQAT-----------MDWMEQEQN 54 N+ +I H+D GK+T +LY G + ++ E+++ + +D M++E+ Sbjct: 8 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 67 Query: 55 RGITITAAATTCFWKDHQINIIDTPGHVDFTVEVERALRVLDGAVVIFCA-----VGGVE 109 RGITI K + IID PGH DF + D A+++ A G+ Sbjct: 68 RGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMS 127 Query: 110 PQSETVWH--QADTYGVPR-IAYVNKMDRMGADF--------FAVLEEMEKKLG 152 + +T H A T G+ + I VNKMD ++ +VL++ K LG Sbjct: 128 TEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLG 181 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 696,967 Number of Sequences: 1700 Number of extensions: 32768 Number of successful extensions: 111 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 104 Number of HSP's gapped (non-prelim): 4 length of query: 682 length of database: 492,079 effective HSP length: 83 effective length of query: 599 effective length of database: 350,979 effective search space: 210236421 effective search space used: 210236421 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718842|ref|YP_003874374.1| hypothetical protein STHERM_c11590 [Spirochaeta thermophila DSM 6192] (642 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aero... 42 3e-05 >gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aeropyrum pernix K1] Length = 791 Score = 42.4 bits (98), Expect = 3e-05 Identities = 51/287 (17%), Positives = 116/287 (40%), Gaps = 27/287 (9%) Query: 348 TSSAISSIVDRIHSVVSQIQTQARNIAESSAAIEQMNASVQHVASLAEDRR--------A 399 T +A+ + + + ++ T+ E++ + ++ + L E+ A Sbjct: 371 TGTAVETATETTITTITTTTTREAEETEAAEVLAELTEVEIEIGELMEELETLQQKAASA 430 Query: 400 RTADLLSVIHDGGEKVSTTNEVISSIHRXXXXXXXXXXXXXTVAEQTNLLSMNAAIESAH 459 ++ ++ + G + + +++ + L ++ +++A Sbjct: 431 NQGEVQEILDEAGALIDRASSLLAEARSLLDEGRIAEAKEKIAQAEAALEKADSKLDTAE 490 Query: 460 A--------GEAGRGFAVVAEEIRKLAESTGEHADRIS--QSLSRITDRIQQALHASDES 509 A E R AEE AE+ + A ++S +++ +R+++A + + Sbjct: 491 AILEVVEEYAERAREAIEEAEEALAKAEAKLQLAAQLSGSEAVEEALNRLEEAKEKLEAA 550 Query: 510 HHAFENIRRDVSQFATALDEIAASMTELSR--ASSSILSATHAINEITTRVREGAEDMMQ 567 A+ N R A L E AAS+ E ++ A +I +A A++E+ +V E + + Sbjct: 551 KEAYSNGRYGE---AIVLAEEAASIAEEAKELAEKAIEAAQEAVSEVLNQVEELLDRVKD 607 Query: 568 RAGQIRDAAEGSRNISLEVRKGVEEIERGTREILQAVNTISDLAQES 614 +I D AE +R + EEI+ E+L ++ L +E+ Sbjct: 608 LQEEIEDIAEKAREAGVLT----EEIQAAIDEVLGKLDQARSLLEEA 650 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.129 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 473,728 Number of Sequences: 1700 Number of extensions: 17796 Number of successful extensions: 102 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 101 Number of HSP's gapped (non-prelim): 2 length of query: 642 length of database: 492,079 effective HSP length: 83 effective length of query: 559 effective length of database: 350,979 effective search space: 196197261 effective search space used: 196197261 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718843|ref|YP_003874375.1| translation elongation factor G [Spirochaeta thermophila DSM 6192] (693 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601403|ref|NP_147939.1| elongation factor EF-2 [Aeropyrum p... 177 1e-45 gi|14601666|ref|NP_148207.1| elongation factor 1-alpha [Aeropyru... 58 9e-10 >gi|14601403|ref|NP_147939.1| elongation factor EF-2 [Aeropyrum pernix K1] Length = 736 Score = 177 bits (448), Expect = 1e-45 Identities = 182/739 (24%), Positives = 322/739 (43%), Gaps = 98/739 (13%) Query: 8 IRNLSVVGHGGTGKTTLVEHILYAAGVIDKPETVESGRTVSDFLPEEIENRFSIKTA--- 64 IRN+ ++ H GKTT + +L AAG+I E + V D+L E + ++K+A Sbjct: 21 IRNIGIIAHVDHGKTTTSDSLLAAAGIIS--ERIAGEALVLDYLNVEKQRGITVKSANVS 78 Query: 65 -LSAFTWKDIKINLFDTPGAGDFIGEVISAFRASDCALMVVDAKSGVQIETIKLWRRLDM 123 + K INL DTPG DF G+V + R D A++VVDA GV +T + R+ Sbjct: 79 LYHEYEGKPYVINLIDTPGHVDFSGKVTRSLRVLDGAIVVVDAVEGVMTQTETVIRQALE 138 Query: 124 RNMPRMVFINKIELDNAGYNKTVEDLK---ERFQKTFIPVTIPLGEGTDYKGVINLLTMK 180 + ++FINK++ + +++LK E+ Q+ F+ + K V NL+ + Sbjct: 139 ERVRPILFINKVD-------RLIKELKLPPEKIQQRFVEII---------KEVNNLIDLY 182 Query: 181 AHVMDDGQEKEVDIPEEYREAAEQAHLELIEAAAEGDD-ELTEKYFEAGTLTIEEAKRGL 239 A PE ++ + ++ + D ++ + +T E + Sbjct: 183 AE------------PEFRKKWKLDPNAGMVAFGSAKDKWGISVPQVKKKGITFREIIQAY 230 Query: 240 AEGLKENKFVPVLCGSALLHSGINDLFHVINEIAPSPEALSE---PILRNGE------ED 290 +G + V L LH + D+ + + P+P P + G+ + Sbjct: 231 EKG---KEAVAELSKKMPLHETLLDM---VIKFVPNPREAQRYRIPKIWKGDINSEIGQA 284 Query: 291 RLPVDPNAPFCGYVFKTFYDQFSGKLSFIKVVQGSLTPGTEVLNLSEQKKERISKVFTAI 350 L DP+ P ++ ++ +G ++ +V G+L G EV L+ KK R+ +V + Sbjct: 285 MLNADPDGPLVFFINDVRIEK-AGLVATGRVFSGTLRSGEEVYLLNAGKKSRLLQVSIYM 343 Query: 351 GKKLVETSGAVAGDIAVVTKADSLRTNDTLAAQEVDFRFKPLA----LPQPIFSLAIGTD 406 G T AG+I V + +R +T+ + + P + +P+ ++A+ Sbjct: 344 GPFREVTKEIPAGNIGAVMGFEDVRAGETVVSLGYEENAAPFESLRYVSEPVVTIAVEPV 403 Query: 407 SKKEQDKLGELLHREAEEDLTFTLTYNPETKETVISGMGELHINMILNKIREKFKINVHT 466 ++ K+ E L + ED + N ET E ++SGMG LH+ + L +REKF + V Sbjct: 404 KIQDLPKMIEALRKLTIEDPNLVVKINEETGEYLLSGMGPLHLEIALTMLREKFGVEVKA 463 Query: 467 KTPEVAYRETITKPA-----SAEYTHKK----------QTGGHGQYARVVMEIKPLPRGE 511 P V YRET+ + + + H K +T Q V + P R Sbjct: 464 SPPIVVYRETVRQQSRVFEGKSPNKHNKLYISVEPLNEETITLIQNGAVTEDQDPKDRAR 523 Query: 512 IFA------FHNAIHGGAISKNYIPGVEK----------------GVREGMEAGILAGYP 549 I A ++ A AI +N V+K G R ++ G LA P Sbjct: 524 ILADKAGWDYNEARKIWAIDENINVFVDKTAGVQYLREVKDTIIAGFRLALKEGPLAAEP 583 Query: 550 VVDLEATVVDG--KEHPVDSSELAFKIAAREALKDALTRAGCVLLEPIMKLTVFIEEQYL 607 V ++ + D E PV A R A+ + LLEP+ KL + +YL Sbjct: 584 VRGVKVVLHDAVIHEDPVHRGPGQLYPAVRNAIWAGILDGRPTLLEPLQKLDIRAPMEYL 643 Query: 608 GDILSDLSGRRGKVLGQKPIGGGIVEVDALVPQAELLRYAIDLKSMTSGTGSFEIEFSHY 667 +I + L+ +RG+++ + G + + A +P AE A +L+S T+G + +EF + Sbjct: 644 SNITAVLTRKRGRIINVETT-GVMARIIAAIPVAESFDLAGELRSATAGRAFWGVEFYGW 702 Query: 668 EPISGRIAEEVIKRAQSRQ 686 P+ ++ +++I + + R+ Sbjct: 703 APVPDQMLQDLIAKIRQRK 721 >gi|14601666|ref|NP_148207.1| elongation factor 1-alpha [Aeropyrum pernix K1] Length = 437 Score = 57.8 bits (138), Expect = 9e-10 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 13/113 (11%) Query: 10 NLSVVGHGGTGKTTLVEHILYAAGVIDKP---ETVESGRT----------VSDFLPEEIE 56 NL V+GH GK+TLV H+LY G I++ E E ++ + D + EE E Sbjct: 8 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 67 Query: 57 NRFSIKTALSAFTWKDIKINLFDTPGAGDFIGEVISAFRASDCALMVVDAKSG 109 +I F K + D PG DF+ +I+ +D A++VV A+ G Sbjct: 68 RGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKG 120 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 699,668 Number of Sequences: 1700 Number of extensions: 32581 Number of successful extensions: 171 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 164 Number of HSP's gapped (non-prelim): 4 length of query: 693 length of database: 492,079 effective HSP length: 83 effective length of query: 610 effective length of database: 350,979 effective search space: 214097190 effective search space used: 214097190 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718844|ref|YP_003874376.1| hypothetical protein STHERM_c11610 [Spirochaeta thermophila DSM 6192] (453 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601576|ref|NP_148116.1| citrate synthase [Aeropyrum pernix K1] 129 2e-31 >gi|14601576|ref|NP_148116.1| citrate synthase [Aeropyrum pernix K1] Length = 394 Score = 129 bits (323), Expect = 2e-31 Identities = 130/426 (30%), Positives = 194/426 (45%), Gaps = 57/426 (13%) Query: 34 VKRGLRNEDGSGVLVGLTEIGEVHGYVIDEGEAVPVPGRLLYRGISVEDLVAGFQADGRF 93 V +GL N V+V T I V +GEA +YRG ++ED+ G A Sbjct: 16 VPKGLVN-----VIVDETRISGVD----PKGEAT------IYRGYTIEDI--GEHAS--- 55 Query: 94 GFEETAFLLLFGYLPTKSELEEFQAVLGENR-DLPGDFTESTILKNPSSDIMNKLARSVL 152 F E A L+LFG LP EL+E ++ + + R +P ++ + + + + L Sbjct: 56 -FYEAAHLILFGRLPCDEELKEIKSKIDKYRGQIPEKLFDAMKHVPVTHPMYYGIYGTAL 114 Query: 153 TLYSFDPN---PEDLSIVNVLRQSIELISRFPVLVAYGYQAKRHYYHGESLYIHPPQPDL 209 + P ED + LR L ++ PV+ G+ +HG L P P Sbjct: 115 LGQYYAPEWRFDEDFLYDHALR----LTAQLPVIFTTGWNLA---HHGTFLR---PDPSK 164 Query: 210 STAENFLYLIRPDKEYTRSEAEILDLALVLHAEHGGGNNSTFTIHXXXXXXXXXXXXXXX 269 A + L +I +E + EA + LVL+ +HG N STFT Sbjct: 165 DHAWDVLRMIVM-REPSDIEARAFESTLVLYMDHGF-NASTFTTRVIGSTLSDLYSAVAG 222 Query: 270 XIGSLKGAKHGGANIKVMAMMEDI--KAHVKDWSDEQEVRDYLVKILNKEAFDRSGLVYG 327 I +LKG HGGAN K M M D KA K + +Y+ KE R + G Sbjct: 223 GIAALKGPLHGGANEKAMEMFLDAMKKAEEKGVPLYDYIEEYI-----KEKLARKEKIMG 277 Query: 328 MGHAVYTISDPRAVLLREKAETLAKEKGFEEEFGLYELIARLTPELFAEIKKSNKVIAPN 387 GH +Y + DPR + A+ +AK K + EF + L + E+ K I N Sbjct: 278 FGHRIYKLHDPRTDVA---AKFVAKLK--DGEFWMKVL------KKAEEVMWREKKIPAN 326 Query: 388 VDFYSGFVYKMLGIPTELYTPIFAIARIAGWSAHLVEELISGGRIIRPAYKNV-IGKREY 446 +D Y+ +Y LGIP +YTPIFA+ R+ GWSAH +E++++ ++IRP K V +Y Sbjct: 327 IDLYTAVLYYQLGIPIPMYTPIFAMGRVVGWSAHYIEQVLN-NKLIRPTEKYVGPTGLKY 385 Query: 447 VPLDRR 452 P++ R Sbjct: 386 QPIEER 391 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 482,293 Number of Sequences: 1700 Number of extensions: 22713 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 1 length of query: 453 length of database: 492,079 effective HSP length: 80 effective length of query: 373 effective length of database: 356,079 effective search space: 132817467 effective search space used: 132817467 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718845|ref|YP_003874377.1| tRNA (guanine-N(7)-)-methyltransferase [Spirochaeta thermophila DSM 6192] (275 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 301,367 Number of Sequences: 1700 Number of extensions: 13732 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 275 length of database: 492,079 effective HSP length: 76 effective length of query: 199 effective length of database: 362,879 effective search space: 72212921 effective search space used: 72212921 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718846|ref|YP_003874378.1| transcription-repair coupling factor [Spirochaeta thermophila DSM 6192] (1127 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431775|ref|NP_148447.2| ATP-dependent helicase [Aeropyrum ... 42 6e-05 >gi|118431775|ref|NP_148447.2| ATP-dependent helicase [Aeropyrum pernix K1] Length = 948 Score = 42.4 bits (98), Expect = 6e-05 Identities = 80/360 (22%), Positives = 134/360 (37%), Gaps = 38/360 (10%) Query: 607 RPMDRLVCGDVGFGKTEIALRAAFKAVTAGKQVAILAPTTILVEQHYETFQERLEGFPVR 666 R ++ LV G GKTE AL + G+ VA ++ LEG R Sbjct: 35 RGLNALVVAPTGSGKTEAALAPLLARLRNGR-VASGGGVKVVYVTPLRALNRDLEGRVER 93 Query: 667 AAMLSRFVPVPEQREILKDLR----EGKVDILIGTHRIL-------QKDVVFKDLGLLVI 715 A L + + ++ R E DI+I T L + V K +V+ Sbjct: 94 LAGLFGYTVQVRHGDTVQSSRRRFLERPPDIVITTPESLALLLTVKRAKEVLKQARAVVV 153 Query: 716 DE-----EQRFGVKDKERLKELKAS----VDCLTLTATPIPRTLHMSLLKI---RDISL- 762 DE E + GV+ L++L+ + + L+AT +L+ + + R +S+ Sbjct: 154 DEIHELMESKRGVELSLNLEKLELMAGRRLQRIGLSATVSRHSLYRAASLLGAGRHVSMV 213 Query: 763 LETPPRE---RRPIETHILEFSXXXXXXXXXXXXXXGGQVFYLHNRVETLPQVKTFIERL 819 L+T P+E R + F GG V N T+ + + R Sbjct: 214 LDTSPKEYDVRVVVVGDEGRFWENSVKAIAELVKGEGGSVLIFANTRSTVETLAFALSRE 273 Query: 820 VPEVMVEVAHGKMSSHQLEEIMHRFIHGGFHVLVSTTIIENGINIPNANTIIIDRADMYG 879 + E V HG +S H E + F G +V+T+ +E GI++ ++ Sbjct: 274 LGEE-VPAHHGSLSRHVRERVERDFKEGRVKAIVATSSLELGIDVGRVALVV----QFLS 328 Query: 880 IAQLYQLRGRVGRSDRTAYAYLFYPAQREISELAAKRLQVIADHTELGAGFKVALKDLEV 939 Q+ + R GRS + F R + +V+ H K L+D+ + Sbjct: 329 PRQVTAMVQRAGRS-----GHRFGERSRAVIVTIDNVFEVLESHVIAFRAMKGDLEDISI 383 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,157,479 Number of Sequences: 1700 Number of extensions: 54450 Number of successful extensions: 193 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 193 Number of HSP's gapped (non-prelim): 1 length of query: 1127 length of database: 492,079 effective HSP length: 87 effective length of query: 1040 effective length of database: 344,179 effective search space: 357946160 effective search space used: 357946160 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718847|ref|YP_003874379.1| hypothetical protein STHERM_c11640 [Spirochaeta thermophila DSM 6192] (314 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 295,640 Number of Sequences: 1700 Number of extensions: 12441 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 314 length of database: 492,079 effective HSP length: 77 effective length of query: 237 effective length of database: 361,179 effective search space: 85599423 effective search space used: 85599423 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718848|ref|YP_003874380.1| hypothetical protein STHERM_c11650 [Spirochaeta thermophila DSM 6192] (237 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 202,198 Number of Sequences: 1700 Number of extensions: 7145 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 237 length of database: 492,079 effective HSP length: 74 effective length of query: 163 effective length of database: 366,279 effective search space: 59703477 effective search space used: 59703477 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718849|ref|YP_003874381.1| hypothetical protein STHERM_c11660 [Spirochaeta thermophila DSM 6192] (103 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,283 Number of Sequences: 1700 Number of extensions: 3463 Number of successful extensions: 3 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 103 length of database: 492,079 effective HSP length: 64 effective length of query: 39 effective length of database: 383,279 effective search space: 14947881 effective search space used: 14947881 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718850|ref|YP_003874382.1| hypothetical protein STHERM_c11670 [Spirochaeta thermophila DSM 6192] (291 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431622|ref|NP_148221.2| PflA-like protein [Aeropyrum perni... 215 9e-58 gi|118431498|ref|NP_148007.2| PflX-like protein [Aeropyrum perni... 47 7e-07 >gi|118431622|ref|NP_148221.2| PflA-like protein [Aeropyrum pernix K1] Length = 366 Score = 215 bits (548), Expect = 9e-58 Identities = 128/292 (43%), Positives = 168/292 (57%), Gaps = 9/292 (3%) Query: 9 EARYYTPFEDSA---VRCELCPHRCIIREGKTGVCTVRLNRDGRLILPYYGKISSIALDP 65 +AR + D VRC+LC RC+I GK G C VR N G L YG +S+ +DP Sbjct: 14 KARLWVKLSDGKEGWVRCDLCQRRCVIAPGKYGACGVRKNIGGELYTLVYGLLSASNIDP 73 Query: 66 IEKKPLYHFHPGSVILSIGFFGCSFKCPFCQNFEISQEYRTYLRTALEIPTERLIHQAKA 125 IEKKPL HF+PGS +LSI GC+F C FCQNFEISQ + E ++ A Sbjct: 74 IEKKPLLHFYPGSTVLSISTVGCNFFCQFCQNFEISQSRLEKGLYGVYRTPEEVVRLALV 133 Query: 126 YHSIGIAYTYSEPLIHFEYVMEVAVEARRHGLKNVLVTNGYINPEPSDELLEVVDAANVD 185 Y + GI YTY+EP I FE V +VA EA++HGL N +VTNGY+ PE DEL ++DAA VD Sbjct: 134 YGADGITYTYNEPTIFFETVYDVAKEAKKHGLFNTMVTNGYMTPEAVDELGSLIDAATVD 193 Query: 186 LKSFND-EFYRK-EIKGSLEPVL-AFIEKAAKKIHVEVTTLLIPGKNDSEEEVRSIARRL 242 K D EFYRK EP+ A + K +E+T L++P D E VR +AR + Sbjct: 194 FKGGGDPEFYRKIMFVPDPEPIYEAILAMKDKGWWIEITNLVVPILGDKPEYVRRMARWI 253 Query: 243 A-GIRKDIPLHLSAYFPRYKYT-IPPTPRATVYRAVEIA-KEYLDYVHAGNV 291 + ++P HL + P YK +P TP T+ + IA +E L +V+ GNV Sbjct: 254 VENLGPEVPFHLLRFHPDYKLRHVPHTPVKTLEKLARIAMEEGLKHVYIGNV 305 >gi|118431498|ref|NP_148007.2| PflX-like protein [Aeropyrum pernix K1] Length = 365 Score = 46.6 bits (109), Expect = 7e-07 Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 21/172 (12%) Query: 23 CELCPHRCIIREGKTGVCTVRLNRDGRLILPYYGKISSIALDPIEKKPLYHFHPGSVILS 82 CELC RC + K+ R G L + + S L E+ PL P I Sbjct: 101 CELCERRCRVERAKS--------RRGACRLAWEVYVHSAFLHLGEEAPLV---PSGTIF- 148 Query: 83 IGFFGCSFKCPFCQNFEISQEYRTYLRTALEIPTERLIHQAKAYHSIG---IAYTYSEPL 139 + GC+F C FCQN+++SQ R A + RL G I + +P+ Sbjct: 149 --YGGCNFTCVFCQNWDVSQ---WKARDAHIVTPRRLGEIQDRLAEAGARNINHVGGDPV 203 Query: 140 IHFEYVMEVAVEARRHGLKNVLVTNGYINPEPSDELLEVVDAANVDLKSFND 191 ++E +++ H + +N Y+ E D L++++D DLK ND Sbjct: 204 PSLHVIVE-SMKYASHLKPQLWNSNMYMTLEALDILVDLIDIWLPDLKFGND 254 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 298,083 Number of Sequences: 1700 Number of extensions: 12627 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 48 Number of HSP's gapped (non-prelim): 2 length of query: 291 length of database: 492,079 effective HSP length: 76 effective length of query: 215 effective length of database: 362,879 effective search space: 78018985 effective search space used: 78018985 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718851|ref|YP_003874383.1| hypothetical protein STHERM_c11680 [Spirochaeta thermophila DSM 6192] (299 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.475 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 358,114 Number of Sequences: 1700 Number of extensions: 17158 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61 Number of HSP's gapped (non-prelim): 0 length of query: 299 length of database: 492,079 effective HSP length: 76 effective length of query: 223 effective length of database: 362,879 effective search space: 80922017 effective search space used: 80922017 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718852|ref|YP_003874384.1| ferredoxin-2 [Spirochaeta thermophila DSM 6192] (63 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430995|ref|NP_147145.2| ferredoxin [Aeropyrum pernix K1] 55 3e-10 gi|118430883|ref|NP_146967.2| ferredoxin [Aeropyrum pernix K1] 40 1e-05 >gi|118430995|ref|NP_147145.2| ferredoxin [Aeropyrum pernix K1] Length = 110 Score = 55.1 bits (131), Expect = 3e-10 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 6/59 (10%) Query: 4 RVVIDRDECIGCGSCADACP-DVFEMDDEGKARVILPEGGDE-TCIEEAISICPVECIH 60 RV ID+D CI CG+C + CP D E D+ KAR+I + D+ +CIE CPV CI+ Sbjct: 9 RVAIDQDTCISCGACIEVCPYDALEFDENMKARLIWEKCQDDFSCIES----CPVNCIY 63 >gi|118430883|ref|NP_146967.2| ferredoxin [Aeropyrum pernix K1] Length = 74 Score = 40.0 bits (92), Expect = 1e-05 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 6/61 (9%) Query: 1 MAKRVVIDRDECIGCGSCADACPDVFEMDDEGKARVI--LPEG----GDETCIEEAISIC 54 M K V+ R+ C+ C CP+VFE +G+ARV L EG E C EA +C Sbjct: 1 MIKVVIEPRESCMPDFVCVAVCPEVFEKHGDGRARVRGGLGEGFFDRSLEACASEAARLC 60 Query: 55 P 55 P Sbjct: 61 P 61 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.472 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,924 Number of Sequences: 1700 Number of extensions: 2089 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 2 length of query: 63 length of database: 492,079 effective HSP length: 35 effective length of query: 28 effective length of database: 432,579 effective search space: 12112212 effective search space used: 12112212 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718853|ref|YP_003874385.1| hypothetical protein STHERM_c11710 [Spirochaeta thermophila DSM 6192] (241 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 201,906 Number of Sequences: 1700 Number of extensions: 7327 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 241 length of database: 492,079 effective HSP length: 74 effective length of query: 167 effective length of database: 366,279 effective search space: 61168593 effective search space used: 61168593 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718854|ref|YP_003874386.1| hypothetical protein STHERM_c11720 [Spirochaeta thermophila DSM 6192] (135 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 143,130 Number of Sequences: 1700 Number of extensions: 5965 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 135 length of database: 492,079 effective HSP length: 68 effective length of query: 67 effective length of database: 376,479 effective search space: 25224093 effective search space used: 25224093 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718855|ref|YP_003874387.1| pyrimidine dimer DNA glycosylase [Spirochaeta thermophila DSM 6192] (143 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.140 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 172,653 Number of Sequences: 1700 Number of extensions: 7324 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 143 length of database: 492,079 effective HSP length: 69 effective length of query: 74 effective length of database: 374,779 effective search space: 27733646 effective search space used: 27733646 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718856|ref|YP_003874388.1| hypothetical protein STHERM_c11740 [Spirochaeta thermophila DSM 6192] (135 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.132 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 145,068 Number of Sequences: 1700 Number of extensions: 6286 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 135 length of database: 492,079 effective HSP length: 68 effective length of query: 67 effective length of database: 376,479 effective search space: 25224093 effective search space used: 25224093 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718857|ref|YP_003874389.1| AraC family transcriptional regulator [Spirochaeta thermophila DSM 6192] (303 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 302,712 Number of Sequences: 1700 Number of extensions: 13416 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 303 length of database: 492,079 effective HSP length: 76 effective length of query: 227 effective length of database: 362,879 effective search space: 82373533 effective search space used: 82373533 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718858|ref|YP_003874390.1| aldo/keto reductase [Spirochaeta thermophila DSM 6192] (331 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601541|ref|NP_148081.1| oxidoreductase [Aeropyrum pernix K1] 116 9e-28 gi|14601748|ref|NP_148289.1| oxidoreductase [Aeropyrum pernix K1] 90 9e-20 gi|118431478|ref|NP_147979.2| hypothetical protein APE_1495.1 [A... 82 1e-17 >gi|14601541|ref|NP_148081.1| oxidoreductase [Aeropyrum pernix K1] Length = 335 Score = 116 bits (290), Expect = 9e-28 Identities = 102/328 (31%), Positives = 157/328 (47%), Gaps = 35/328 (10%) Query: 5 RLGTNGPVVSAIGLGCMRMS---FGQRPLPDRNEMIKLIRTAVELGVTFFDTAEVYGPYT 61 RLG GP VS +GLG + +G + L + + + + AVE G+ DTAEVYG + Sbjct: 6 RLGRTGPRVSRVGLGLWQFGSPMWGGKAL-SADVLARGLSIAVEEGINLLDTAEVYGMGS 64 Query: 62 NEELVGEALEPFKG--EVVIATKFGFELHPDGRPGWKGLNSRPEHIKKAVEGSLKRLRVE 119 +E ++GEAL+ + VI +K G S I K G RL Sbjct: 65 SERMLGEALKRLNAREDFVIVSKVA------------GFRSTAGDIVKGARGIAGRLS-S 111 Query: 120 AIDLYYQHRVDPNVP-IEDVAGAVKDLIDEGKVKYFGLSEAGAKTIRRAHAVC----PVT 174 A D+ H P + V ++ ++EG Y+G S G + A + PV Sbjct: 112 APDVILHHWPPPVYSRLCSVVRGLEQAVNEGLASYYGFSNYGEDLLGDALSCTRRLEPV- 170 Query: 175 AVQSEYSLWWRKPEEEVLPTCEELGIGFVPFSPLGKGFLTGTIDEKARFDETDIRSRIPR 234 A Q Y+L +R PE+ ++P + G+ + +SPL KG L G E R D P Sbjct: 171 ADQILYNLAYRTPEQRLIPLLHQHGMTPIAWSPLAKGALAGFKGEPTRAQAGD-----PV 225 Query: 235 FKPEFLKANMALVDLVKEIAGRKGATPAQIALAWLLAQKPWIVPIPGTTKPERLKENVGA 294 F+ + L ++++ +A R GA+ A +ALAW+ + VPI G +PER++E A Sbjct: 226 FRTAL--EDTGLQEVLESVARRLGASKASVALAWVAYKGA--VPIVGWRRPERVREAAAA 281 Query: 295 ADVELTPEDLEEIDEALSR-IRIVGERY 321 A ++L+ ED+ +DEA R + + G Y Sbjct: 282 ARLKLSEEDVALLDEASKRYVTLWGSSY 309 >gi|14601748|ref|NP_148289.1| oxidoreductase [Aeropyrum pernix K1] Length = 272 Score = 89.7 bits (221), Expect = 9e-20 Identities = 79/311 (25%), Positives = 134/311 (43%), Gaps = 57/311 (18%) Query: 6 LGTNGPVVSAIGLGCMRMSFGQRPLPDRNEMIKLIRTAVELGVTFFDTAEVYGPYTNEEL 65 +G +SA+GLG + D + ++ A+E G+ DTAE+YG E Sbjct: 14 IGKTKERLSAVGLGTWAIR-------DYSSALESYVYAIERGINHIDTAEMYGAGEAERF 66 Query: 66 VGEALEPF-KGEVVIATK-FGFELHPDGRPGWKGLNSRPEHIKKAVEGSLKRLRVEAIDL 123 VG+ L + V + TK + F P+ KA S +R+ V +D+ Sbjct: 67 VGKVLRSVGRDRVYVVTKLYPFRFRD------------PDEAVKAARASAERMGVSYVDI 114 Query: 124 YYQHRVDPNVPIEDVAGAVKDLIDEGKVKYFGLSEAGAKTIRRAHAVC---PVTAVQSEY 180 H DP PI+D +++ + + G +Y G+S + + A + Q +Y Sbjct: 115 ILIHWPDPQTPIKDQVKSLEAIAEAGLARYIGVSNFSKEQLEEALTATKKHEIVVNQVKY 174 Query: 181 SLWWRKPEEEVLPTCEELGIGFVPFSPLGKGFLTGTIDEKARFDETDIRSRIPRFKPEFL 240 S+ R+ EE++P E I +SPL +G Sbjct: 175 SVLDRR-AEELIPLAVEKSILLEAYSPLERG----------------------------- 204 Query: 241 KANMALVDLVKEIAGRKGATPAQIALAWLLAQKPWIVPIPGTTKPERLKENVGAADVELT 300 ++A V L+ +I + G TP Q+AL ++++ +P + IP + E + E +G+ L Sbjct: 205 --HVAEVRLLAKIGRQYGKTPVQVALNFIVS-RPNFIAIPKAERREHVDEILGSLGWRLK 261 Query: 301 PEDLEEIDEAL 311 PED+E I+E L Sbjct: 262 PEDIELIEEKL 272 >gi|118431478|ref|NP_147979.2| hypothetical protein APE_1495.1 [Aeropyrum pernix K1] Length = 326 Score = 82.4 bits (202), Expect = 1e-17 Identities = 82/282 (29%), Positives = 125/282 (44%), Gaps = 22/282 (7%) Query: 35 EMIKLIRTAVELGVTFFDTAEVYGPYTNEELVGEALEPFKGEVVIATKFGFELHPDGRPG 94 E + ++R A LGV FDTA+VYG E L+GEA +G V +ATK G++ + GRP Sbjct: 30 EALAILRFARSLGVEHFDTADVYGNGLGERLLGEAFPGGRG-VFVATKVGYDFYSGGRPV 88 Query: 95 WKGLNSRPEHIKKAVEGSLKRLRVEAIDLYYQHRVDPNVPIEDVAGAV----------KD 144 + E+++KA+ SL+RL VE++DL Y H N P+E + G + Sbjct: 89 RR---YDREYLEKALRRSLERLGVESVDLLYIH----NPPLEVLRGGEIYRFLSWARREG 141 Query: 145 LIDEGKVKYFGLSEAGAKTIRRAHAVCPVTAVQSEYSLWWRKPEEEVLPTCEELGIGFVP 204 LI G + G A+ A + V AVQ Y++ ++P + E G+ V Sbjct: 142 LIGMGGIA-LGPETDVAEEALEAVSHSEVEAVQFVYNMLEQEPGYTIAAWARERGVAAVA 200 Query: 205 FSPLGKGFLTGTIDEKARFDETDIRSRIPRFKPEFLKANMALVDLVKEIAGRKGATPAQI 264 P G L +I +D RS R + + + +K + TP Q Sbjct: 201 RVPHAGGVLDESITPSEAEKLSDHRSLRRR---GWYRWAFRVYGRMKPLLEGLPGTPGQK 257 Query: 265 ALAWLLAQKPWIVPIPGTTKPERLKENVGAADVELTPEDLEE 306 A+A++L+ P + ERL E V P + E Sbjct: 258 AIAFILSSAPVDSVVLIARSRERLVEYVSPESTLQLPRSVVE 299 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 375,063 Number of Sequences: 1700 Number of extensions: 17998 Number of successful extensions: 93 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 82 Number of HSP's gapped (non-prelim): 4 length of query: 331 length of database: 492,079 effective HSP length: 77 effective length of query: 254 effective length of database: 361,179 effective search space: 91739466 effective search space used: 91739466 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718859|ref|YP_003874391.1| major facilitator superfamily permease/D-galactonate transporter [Spirochaeta thermophila DSM 6192] (406 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.141 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 376,434 Number of Sequences: 1700 Number of extensions: 16270 Number of successful extensions: 76 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76 Number of HSP's gapped (non-prelim): 0 length of query: 406 length of database: 492,079 effective HSP length: 79 effective length of query: 327 effective length of database: 357,779 effective search space: 116993733 effective search space used: 116993733 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718860|ref|YP_003874392.1| cupin 2 conserved barrel domain-containing protein [Spirochaeta thermophila DSM 6192] (138 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.141 0.463 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 177,228 Number of Sequences: 1700 Number of extensions: 8906 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 138 length of database: 492,079 effective HSP length: 68 effective length of query: 70 effective length of database: 376,479 effective search space: 26353530 effective search space used: 26353530 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718861|ref|YP_003874393.1| iron-containing alcohol dehydrogenase [Spirochaeta thermophila DSM 6192] (423 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431664|ref|NP_148291.2| alcohol dehydrogenase [Aeropyrum p... 96 2e-21 >gi|118431664|ref|NP_148291.2| alcohol dehydrogenase [Aeropyrum pernix K1] Length = 390 Score = 95.9 bits (237), Expect = 2e-21 Identities = 89/353 (25%), Positives = 145/353 (41%), Gaps = 11/353 (3%) Query: 26 LEYYNPTRLVFGAGALESLGERARAYGNKALLVIGKGSVKRTGAFDRAVAXXXXXXXXXX 85 +++ P R+V+ +L G K +LV+ G V F AV Sbjct: 2 VDFVFPRRIVYNESLPRALETLLGDKGVKHVLVVTDGKVAAMSWFKEAVEHVASLGVEVC 61 Query: 86 XXXXXXPNPRFTTVLKGAETAKKHGCDMVVALGGGSVMDASKVIAATVRY-EGDPSEXXX 144 P P F A A++ + +VA+GGGSV+DA+K A V++ D Sbjct: 62 IFDGVTPEPEFDVGDAIASEARRCRAEAIVAVGGGSVIDAAK--AGFVKFVRPDADLEGL 119 Query: 145 XXXXXXXXXXXXXXIITVPTLAATGSETNCGAVITLDTGEEPLKTFVIAEALYPRLAIAD 204 ++ VPT + TGS+ + G V+T K V + + P +I D Sbjct: 120 APFNYLGLEDSGIVLVAVPTTSGTGSDASYGIVLTKRVNGGREKIAVGSYEVVPYASILD 179 Query: 205 PTLTLSVPPDHTAYGVADILAHVTEGYFNGVDGTPIQDGFAETVIRTVLEWGPRAVAHGD 264 P++TL +P T D LAH E + P+ D A V P V Sbjct: 180 PSITLGMPERLTVGTAVDALAHSVEA-IASTNANPLSDALAAKAAEIVFRRLPEVVNDPG 238 Query: 265 DLEARTQLQWASIVALNGWVQTGVHAPYPVHQIEHTLSGIYDVPHGAGLAVLNPAWMRF- 323 + +AR ++ A+ +A + +G+ H I H L HGA + ++ P +RF Sbjct: 239 NYDARAEMHIAATMAGMAFTNSGLGL---AHAIAHPLGARLGTHHGATVGMVLPHVVRFN 295 Query: 324 AAKYNPDRFVQFAQRIFGVSMEGRDKREVAMEGIYRFEEFLRSIGCPTRLSEL 376 ++ + R + ++ S+ G ++R + I EE +G PTR+ EL Sbjct: 296 ESRSDYARRKYWELKLLLESLLGLEERGSLADHI---EELYARVGQPTRVREL 345 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 422,049 Number of Sequences: 1700 Number of extensions: 17874 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 1 length of query: 423 length of database: 492,079 effective HSP length: 79 effective length of query: 344 effective length of database: 357,779 effective search space: 123075976 effective search space used: 123075976 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718862|ref|YP_003874394.1| flavodoxin [Spirochaeta thermophila DSM 6192] (158 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 184,312 Number of Sequences: 1700 Number of extensions: 8199 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 158 length of database: 492,079 effective HSP length: 70 effective length of query: 88 effective length of database: 373,079 effective search space: 32830952 effective search space used: 32830952 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718863|ref|YP_003874395.1| hypothetical protein STHERM_c11810 [Spirochaeta thermophila DSM 6192] (173 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 194,890 Number of Sequences: 1700 Number of extensions: 8259 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 173 length of database: 492,079 effective HSP length: 71 effective length of query: 102 effective length of database: 371,379 effective search space: 37880658 effective search space used: 37880658 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718864|ref|YP_003874396.1| hypothetical protein STHERM_c11820 [Spirochaeta thermophila DSM 6192] (263 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] 185 1e-48 gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum... 64 4e-12 >gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] Length = 260 Score = 185 bits (469), Expect = 1e-48 Identities = 107/259 (41%), Positives = 148/259 (57%), Gaps = 2/259 (0%) Query: 1 MELGLRGKTALVAAASSGLGYAVALRLAAEGARVAICARSXXXXXXXXXXXXXX-XGASV 59 M+LG++GK A+V A SSGLG+A AL LA GAR+ + +R+ GA V Sbjct: 1 MDLGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQV 60 Query: 60 LPVVADLTRRGDVERFVEAARRELGPVSILVTNTXXXXXXXXXXXXXXXWEAAFQLVFYS 119 V D+ GD++R E AR +LG ILV +T W+ +++L+ S Sbjct: 61 DIVAGDIREPGDIDRLFEKAR-DLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARS 119 Query: 120 ALRLIRSVLPDMEERGWGRVVALTSISVKQPIDTLVLSNATRSALTALMKTLSTVYASRG 179 A+ + R M E+GWGR+V + S+++ +P L LSN R + +++TL+ A G Sbjct: 120 AVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHG 179 Query: 180 ITFNTVAPGPIATSRMEQLIQAAVSREGLSPEEALSRWIGDIPMGRLGKPEELADLVAFL 239 +T N V P I T R+ L + R G++ EEAL IPMGR+GKPEELA +VAFL Sbjct: 180 VTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIPMGRVGKPEELASVVAFL 239 Query: 240 CSERAGFITGATIPVDGGA 258 SE+A FITGA IPVDGGA Sbjct: 240 ASEKASFITGAVIPVDGGA 258 >gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum pernix K1] Length = 250 Score = 63.9 bits (154), Expect = 4e-12 Identities = 62/254 (24%), Positives = 103/254 (40%), Gaps = 18/254 (7%) Query: 10 ALVAAASSGLGYAVALRLAAEGARVAICARSXXXXXXXXXXXXXXXGA-SVLPVVADLTR 68 ALV S G+G A LR A EG V I +S G+ V D+ Sbjct: 6 ALVTGGSRGIGRATVLRFAREGWSVVIAYKSRADLAEKTAEEARRLGSPEAYTVRVDV-- 63 Query: 69 RGDVERFVEAARR--ELGP-VSILVTNTXXXXXXXXXXXXXXXWEAAFQLVFYSALRLIR 125 GD + E + R EL P +++LV WE ++ + + Sbjct: 64 -GDPDSVTEMSSRVGELIPHLNVLVNAAGVLQLGGIEETSISEWEETLRVNLTGVYLVTK 122 Query: 126 SVLPDMEERGWGRVVALTSISVKQ-PIDTLVLSNATRSALTALMKTLSTVYASRGITFNT 184 +LP + + W +V + SI+ + + V +A+++ + L K L+ A GI N Sbjct: 123 LLLPLLRKAKWASIVNVASIAGETGNVVAGVAYSASKAGVIGLTKRLAVQLAGYGIRVNA 182 Query: 185 VAPGPIATSRMEQLIQAAVSREGLSPEEALSRWIGDIPMGRLGKPEELADLVAFLCS-ER 243 VAP + T + RE ++ P+ + KPE++A+ + FL R Sbjct: 183 VAPSFVETDMTRSFLDTPEKRERIASLH---------PLKIILKPEDVAEAILFLADPRR 233 Query: 244 AGFITGATIPVDGG 257 + ITG + ++ G Sbjct: 234 SRGITGHVLSINAG 247 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 226,832 Number of Sequences: 1700 Number of extensions: 8198 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 2 length of query: 263 length of database: 492,079 effective HSP length: 75 effective length of query: 188 effective length of database: 364,579 effective search space: 68540852 effective search space used: 68540852 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718865|ref|YP_003874397.1| flavoprotein WrbA [Spirochaeta thermophila DSM 6192] (204 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.131 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 193,885 Number of Sequences: 1700 Number of extensions: 8165 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 204 length of database: 492,079 effective HSP length: 73 effective length of query: 131 effective length of database: 367,979 effective search space: 48205249 effective search space used: 48205249 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718866|ref|YP_003874398.1| hypothetical protein STHERM_c11840 [Spirochaeta thermophila DSM 6192] (280 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 319,540 Number of Sequences: 1700 Number of extensions: 14762 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 0 length of query: 280 length of database: 492,079 effective HSP length: 76 effective length of query: 204 effective length of database: 362,879 effective search space: 74027316 effective search space used: 74027316 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718867|ref|YP_003874399.1| hypothetical protein STHERM_c11850 [Spirochaeta thermophila DSM 6192] (342 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 361,599 Number of Sequences: 1700 Number of extensions: 16489 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 342 length of database: 492,079 effective HSP length: 77 effective length of query: 265 effective length of database: 361,179 effective search space: 95712435 effective search space used: 95712435 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718868|ref|YP_003874400.1| transporter [Spirochaeta thermophila DSM 6192] (380 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 231 2e-62 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 213 6e-57 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 207 3e-55 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 195 1e-51 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 188 2e-49 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 120 6e-29 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 102 2e-23 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 97 5e-22 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 97 5e-22 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 95 3e-21 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 94 4e-21 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 93 1e-20 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 92 2e-20 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 92 2e-20 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 91 5e-20 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 91 5e-20 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 90 8e-20 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 86 1e-18 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 86 2e-18 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 85 3e-18 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 84 4e-18 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 84 8e-18 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 82 3e-17 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 81 4e-17 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 80 1e-16 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 79 2e-16 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 77 9e-16 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 77 9e-16 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 76 1e-15 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 76 2e-15 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 75 4e-15 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 72 2e-14 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 72 2e-14 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 70 9e-14 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 69 2e-13 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 66 2e-12 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 65 3e-12 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 56 2e-09 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 53 1e-08 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 51 4e-08 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 231 bits (590), Expect = 2e-62 Identities = 138/353 (39%), Positives = 194/353 (54%), Gaps = 36/353 (10%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGERRI 97 AL ++L I D V+LGP+GCGK+T LRI+ GL PD G+V FDG+D+T LPP +R + Sbjct: 18 ALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFDGRDVTGLPPKDRNV 77 Query: 98 GMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEHLSG 157 MVFQ YAL+PH+ V NI KK + E + R ++LL +++HL Sbjct: 78 AMVFQSYALWPHMRVFDNIAFPLKIKKLPRD-------EIVRRVRWAAELL--EIDHLLD 128 Query: 158 RFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDVTTV 217 R+P LS G++QRVA+ R I +P + LMDEP S+LD LR + R ++K L VT + Sbjct: 129 RYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKLQRRLGVTMI 188 Query: 218 YVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQAPRNLFVAEFLHPHPSLPAINLIPG 277 YVTHDQ EA+++ DR+VVM G I+Q GTP ++Y P N FVA F+ P +NL G Sbjct: 189 YVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDVYHRPANTFVATFI----GSPQMNLFSG 244 Query: 278 DLMGPEYR--------------EKVIGIRPEDFSLRSPRAAGDYILPAQVVSVFKSPLAM 323 + G E ++G+RPED +L GD A V F L Sbjct: 245 KVAGGRLEALGGIVEGVGLPDGEVLVGVRPEDVAL----GKGDLTFEAYV--DFVEDLGS 298 Query: 324 EAAMRLKVKDRVFVEVPVPSGTSPSEGDEV--GLLPSRMHIFDPLTGERTATH 374 ++ + LK + + + G PS G V G+ ++HIFD +G + TH Sbjct: 299 DSVVHLKTQSGQVIVAKLSGGEPPSPGSRVIAGVSREKIHIFDKESG-KAITH 350 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 213 bits (542), Expect = 6e-57 Identities = 138/365 (37%), Positives = 197/365 (53%), Gaps = 44/365 (12%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGERRI 97 A+ V+L+I D V+LGP+GCGK+T LR+I GL PD+G++L DG+D+T P +R + Sbjct: 18 AVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILIDGEDVTFKDPKDRNV 77 Query: 98 GMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGV-KLEHLS 156 MVFQ+YALYPH++V NI ++ EM + ++ RR ++ + ++E L Sbjct: 78 AMVFQNYALYPHMSVFDNIAFTLHLRR------KEMGLTKDDIRRRVIEVAKLLRIEDLL 131 Query: 157 GRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDVTT 216 R P LS G++QRVA+ R + R P ++LMDEP S+LD LR R +LK L +TT Sbjct: 132 DRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELKKLQKDLKITT 191 Query: 217 VYVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQAPRNLFVAEFLHPHPSLPAINLIP 276 VYVTHDQ EA+ +ADR+ VM +GR+ Q GTPEE+Y P++ FVA F+ P +NL+ Sbjct: 192 VYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEVYMRPKHTFVATFI----GAPPMNLVE 247 Query: 277 GDLMG----------------PEYREKVI----------GIRPEDFSLRSPRAAGDYILP 310 D+ PE VI GIRPE S+ G Sbjct: 248 CDVESVGEDLWISCPGFSRRVPEEARSVIESKGVRKIYLGIRPEFISVSRRETEGSIAGK 307 Query: 311 AQVVSVFKSPLAMEAAMRLKVKDRVFVEVPVPS-GTSPSEGDEVGLLP--SRMHIFDPLT 367 VV PL E + + + D + ++ V + GD+V L S++ IFD T Sbjct: 308 VYVV----EPLGSEYVVNVDIGDGIIIKAKVLGLREKMTPGDKVYLKLDWSKVKIFDYRT 363 Query: 368 GERTA 372 GE A Sbjct: 364 GEALA 368 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 207 bits (527), Expect = 3e-55 Identities = 132/354 (37%), Positives = 195/354 (55%), Gaps = 37/354 (10%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGERRI 97 A+ DVNL I D +LGP+G GK+TLL +I G+ P +G++ F+ D+T+LPP +R I Sbjct: 18 AVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFNDVDVTDLPPNKRNI 77 Query: 98 GMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEHLSG 157 G+VFQ+YALYPH+TV NI + + E +EK ++LLG+ E L Sbjct: 78 GLVFQNYALYPHMTVYENIAFPLRLRNFG-------EPAIKEKVLSVAKLLGI--EGLLD 128 Query: 158 RFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDVTTV 217 R+P LS G++QRVA+ R + ++P + L+DEP S+LD LR + R +LK L +T + Sbjct: 129 RYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQKELGITAI 188 Query: 218 YVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQAPRNLFVAEFLHPHP----SLPAIN 273 YVTHDQ EAL +ADR+ ++ G I+Q G P ++Y PRN+FVA F+ P S+P + Sbjct: 189 YVTHDQSEALAMADRIAIIASGVIQQVGKPWDVYYKPRNVFVASFIGTPPANLVSVPLDS 248 Query: 274 -----LIPG------------DLMGPEYREKVIGIRPEDFSLRSPRAAGDYI-LPAQVVS 315 L+PG L + ++G RPE ++ S GDY+ + A+V + Sbjct: 249 SRRCLLLPGGGRYCPPRRIAEKLAAVKTNSVILGFRPE-VAVLSESPLGDYVSMEAEVYT 307 Query: 316 VFKSPLAMEAAMRLKVKDRVFVEVPVPSGTSPSEGDE--VGLLPSRMHIFDPLT 367 V L E + L V V+V VP P G + + ++ FDP T Sbjct: 308 V--ETLGRENIVTLLVNGSQ-VKVIVPPVVEPRPGSRIFINIEEDKVMYFDPET 358 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 195 bits (496), Expect = 1e-51 Identities = 132/334 (39%), Positives = 175/334 (52%), Gaps = 28/334 (8%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGERRI 97 AL V+ + P++ T VLGP+GCGK+T+L++I GLL P +G+V F G D T LPP R + Sbjct: 20 ALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFGGVDYTGLPPERRSV 79 Query: 98 GMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEHLSG 157 G VFQD AL+PH+TV N+ F + +S E T L + G Sbjct: 80 GFVFQDLALFPHMTVYDNVA----FGLRARGFSGGEVRRQVEWALETVGLTPPR--EFMG 133 Query: 158 RFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDVTTV 217 R LS G++QRVA+ R I +P + L+DEP SHLD +R+ +LK L T + Sbjct: 134 RRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQRKLGSTMI 193 Query: 218 YVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQAPRNLFVAEFLHPHPSLPAINLIPG 277 YVTHDQ EA+ LAD LV+MR+GRI Q GTP E+Y P N++VA F N+IP Sbjct: 194 YVTHDQWEAMELADTLVIMRDGRIVQHGTPSEVYTRPANVYVATFFGD------ANIIPK 247 Query: 278 DLMGP-EYREKVIGIRPEDFSL---RSPRAAGDYILPAQVVS-VFKSPLA------MEAA 326 +L+ P E I +RPED + SP G L A V VF+ PL Sbjct: 248 ELLTPGSGGEWAIMVRPEDLEIVRNGSPVPQGWPRLEAVVEDLVFQGPLIRVELRWRGGR 307 Query: 327 MRLKVKDRVFVEVPVPSGT-----SPSEGDEVGL 355 +R V R +P P SP G +V L Sbjct: 308 LRAVVPRRTASSLPRPGEAVSVTWSPDRGVDVAL 341 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 188 bits (478), Expect = 2e-49 Identities = 100/226 (44%), Positives = 137/226 (60%), Gaps = 9/226 (3%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGERRI 97 AL V+L I D +LGP+GCGK+T LR+I G PD+G+V +D+T L P ER Sbjct: 18 ALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIGSRDVTMLKPYERNT 77 Query: 98 GMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEHLSG 157 MVFQ+YAL+PH+ V NI +K + E + R ++LL +++HL Sbjct: 78 AMVFQNYALWPHMRVFDNIAYGLKLRKLPRS-------EIVRRVRWAAELL--EIDHLLD 128 Query: 158 RFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDVTTV 217 R+P LS G++QRVA+ R I +P + LMDEP S+LD LR + R ++ L VT V Sbjct: 129 RYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQKRLGVTIV 188 Query: 218 YVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQAPRNLFVAEFL 263 YVTHDQ EAL ++ R+ VM GR+EQ GTP E+Y+ P FVA F+ Sbjct: 189 YVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVYEKPATYFVATFI 234 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 120 bits (301), Expect = 6e-29 Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 18/221 (8%) Query: 39 LTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGE---- 94 L V++++ V++GP+G GKSTLL+ I L+ PD G ++F G D+T L + Sbjct: 20 LKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVFRGVDVTRLSGSQLRMV 79 Query: 95 -RRIGMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLE 153 R+IG + Q Y+L+PH+TV NI +Y K D AEE+ + +LG+ E Sbjct: 80 RRKIGYLPQSYSLFPHMTVLRNI-TYPLEKALGLSRRD-----AEERAVKYLSMLGI--E 131 Query: 154 HLSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKAL--LSY 211 L+ R P LS G++QR A+ R + +P + L+DEP S LD R + L+AL ++ Sbjct: 132 DLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADV---LEALFRVAT 188 Query: 212 FDVTTVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQ 252 + VTH+ A+ +ADR+ M +G +++ G P E+ + Sbjct: 189 LGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSELVE 229 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 102 bits (253), Expect = 2e-23 Identities = 72/220 (32%), Positives = 105/220 (47%), Gaps = 21/220 (9%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGE--- 94 AL +V+L++ ++GP+G GK+TLL II G+ P+ G+V+ DG +++ E Sbjct: 29 ALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGEELRR 88 Query: 95 ---RRIGMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLL-GV 150 R+G VFQ + L P LT NIL M + + R +LL V Sbjct: 89 FRLERVGYVFQQHNLIPTLTALENILL-------------PMALAGKANRLRGQELLRRV 135 Query: 151 KLEHLSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLS 210 L R+P LS GE+QR+A+ + DP + + DEP LD E R L Sbjct: 136 GLGGKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEAH 195 Query: 211 YFDVTTVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEI 250 T V THD A +ADR+ V+ +GR+ +P I Sbjct: 196 SRGKTVVLTTHDPRVA-RMADRVAVIEDGRLRGVYSPSRI 234 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 97.4 bits (241), Expect = 5e-22 Identities = 75/215 (34%), Positives = 113/215 (52%), Gaps = 14/215 (6%) Query: 39 LTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGER-RI 97 L DV+L IP TV++GP G GKSTLL+ + G +G+VLF+ D+T +PP +R +I Sbjct: 21 LFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLFENTDVTHMPPHDRAKI 80 Query: 98 GM--VFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEHL 155 GM +FQ ++ LTV N L + + D +E E + R + LG K L Sbjct: 81 GMTFIFQLENIFRELTVYEN-LRLAGYDLPEDVFRDRLE-EVFSMFPRLKERLGQKAGTL 138 Query: 156 SGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDVT 215 SG GE+Q +A+ I R P +FL+DEP + L L +E ++ +L+ T Sbjct: 139 SG--------GERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVR-ILNKEGYT 189 Query: 216 TVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEI 250 V V + +L + D+ V++ GRI G EE+ Sbjct: 190 VVLVEQNVKASLEIGDKGVLVVNGRIAFDGPAEEL 224 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 97.4 bits (241), Expect = 5e-22 Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 16/229 (6%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGE-RR 96 AL VNL I + T+++GP G GK+TL+ +I G PD G+VLF G+DIT + P E + Sbjct: 21 ALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLFKGRDITGMSPHEISK 80 Query: 97 IGMV--FQDYALYPHLTVKTNIL--------SYFFFKKWTKQWSDEMEMEAEEKYRRTSQ 146 +G+V FQ + +LTV N+L + + + W + A R + Sbjct: 81 LGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWLGFEKRAA----ARAFE 136 Query: 147 LLG-VKLEHLSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQL 205 +LG V L+H+ R LS G+ + + I R I + + +MDEP + ++ L ++ Sbjct: 137 ILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVNPRLAGSIMERI 196 Query: 206 KALLSYFDVTTVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQAP 254 K L +T + + H DR+ M G++ +G P+E+ P Sbjct: 197 KYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEVLNNP 245 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 94.7 bits (234), Expect = 3e-21 Identities = 69/237 (29%), Positives = 116/237 (48%), Gaps = 15/237 (6%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITEL-----PP 92 A+ +V + IP +T ++G +G GK+T R+I L P G++ FDG D+ +L Sbjct: 51 AVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGLKE 110 Query: 93 GERRIGMVFQDY--ALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGV 150 RR ++FQD +L P T+ I K + D E Y+ +G+ Sbjct: 111 FRRRAQIIFQDPYGSLNPRKTIFNLIAEPI--KVHGIKVGDLQEYIVSLLYQ-----VGL 163 Query: 151 KLEHLSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLS 210 HL R+P S G++QR+AI R + P ++DEP S LD ++ + LK L Sbjct: 164 NETHLY-RYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQR 222 Query: 211 YFDVTTVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQAPRNLFVAEFLHPHP 267 + +T ++++HD ++D + VM G+I + G EE+++ P + + L P Sbjct: 223 KYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEVFEKPLHPYTKVLLESIP 279 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 94.4 bits (233), Expect = 4e-21 Identities = 67/227 (29%), Positives = 108/227 (47%), Gaps = 21/227 (9%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGER-- 95 AL +V++ + ++GP G GK++LL +I G+ P +G+V F G+DIT L P +R Sbjct: 16 ALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDITGLKPHQRIT 75 Query: 96 -RIGMVFQDYALYPHLTVKTNILSYFFFKKWTK-------QW---SDEMEMEAEEKYRRT 144 + FQ L+ +TV NI+ WT+ W + E+EA E+ Sbjct: 76 LGLSRTFQHSELFHSMTVLENIM--VRLHPWTRGSILEKALWAFRAKRWEVEARERAEHV 133 Query: 145 SQLLGVKLEHLS--GRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYR 202 LL + S G PP G +++V + + ++P + LMDEP + L + +E+ Sbjct: 134 IDLLDLHEHRHSPIGALPP----GIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEKEDIV 189 Query: 203 RQLKALLSYFDVTTVYVTHDQHEALLLADRLVVMREGRIEQAGTPEE 249 R + T V + HD + DR+VVM G++ G P E Sbjct: 190 RAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHE 236 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 93.2 bits (230), Expect = 1e-20 Identities = 73/244 (29%), Positives = 116/244 (47%), Gaps = 26/244 (10%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTL-LRIIGGLLPPDQ---GKVLFDGKDITELPPG 93 A+ V+L++ ++G +G GKSTL L I ++PP + G++L+ G D+ L Sbjct: 22 AVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRILYSGVDLLSLAGE 81 Query: 94 E------RRIGMVFQDYALY--PHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTS 145 E R IGMVFQD Y P+ TV + I S EAE Sbjct: 82 ELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLASSGS-----EAESMAGDAL 136 Query: 146 QLLGVKLEHLSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQL 205 +L+G+ + S +P LS G++QRVAI + +P + + DEP + LD ++ + + Sbjct: 137 ELVGIPRDRASV-YPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKIMDLM 195 Query: 206 KALLSYFDVTTVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQAPRNLFVAEFLHP 265 K L +T + VTHD A +DR+ VM G + + G E++ P +HP Sbjct: 196 KKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDVVSNP--------IHP 247 Query: 266 HPSL 269 + + Sbjct: 248 YTEM 251 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 92.4 bits (228), Expect = 2e-20 Identities = 68/239 (28%), Positives = 108/239 (45%), Gaps = 12/239 (5%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGE--- 94 A+ V+L I + ++G +GCGK+TL + I G+ P G + + G+ +T Sbjct: 37 AVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARDRR 96 Query: 95 --RRIGMVFQD--YALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGV 150 R++ MVFQD +L P + V + + +E A E G Sbjct: 97 LRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLAR--GEEARRRAVEMLETVGLTPG- 153 Query: 151 KLEHLSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLS 210 R P LS G++QRVAI R + +P + + DEP S +D +R + Sbjct: 154 --REFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHR 211 Query: 211 YFDVTTVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQAPRNLFVAEFLHPHPSL 269 T V +THD A +ADR+ VM G+I + G P + + PR+ + A + PS+ Sbjct: 212 RTGATIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVIENPRHPYTAALVTSTPSI 270 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 92.0 bits (227), Expect = 2e-20 Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 29/283 (10%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQ----GKVLFDGKDITELPPG 93 A+ V+ T+ + G +G GKSTL I GL+PP G+++ DG D+T + Sbjct: 24 AVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTSMSEA 83 Query: 94 E-------RRIGMVFQDY--ALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRT 144 E +++ MVFQ L P TV I + + EA ++ Sbjct: 84 ELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRH------EARQRVYEL 137 Query: 145 SQLLGVKLEHLSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQ 204 + +G+ ++ R+P LS G+KQRV I + +P + + DEP + LD ++ + Sbjct: 138 LESVGLH-RSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNL 196 Query: 205 LKALLSYFDVTTVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQAPRNLFVAEFLH 264 LK L +++ + +THD LA+ +++M G+I + G + ++ P++ + L Sbjct: 197 LKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEYGPSDAVFTKPQHPYTQALLK 256 Query: 265 PHPSL----PAINLIPGDLMGPEYREKVIGIRPEDFSLRSPRA 303 P L + IPG P+ R G R F R P+A Sbjct: 257 AIPKLRGPIDRLAYIPGS--PPDLRNPPPGCR---FHPRCPKA 294 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 90.9 bits (224), Expect = 5e-20 Identities = 71/240 (29%), Positives = 114/240 (47%), Gaps = 19/240 (7%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGE--- 94 AL +V+ T+ +LG G GK+TL+RI+ G + P G++ G+ ++ P + Sbjct: 28 ALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYVWGRKVSWRGPWDAIR 87 Query: 95 RRIGMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEH 154 I MV+Q + L +TV+ NI Y + EA + T++ LG++++ Sbjct: 88 NGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRS-------EARRRTLETAERLGLEID- 139 Query: 155 LSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDV 214 + +L G +QRV I + ++ + ++DEP S+L PL E LL V Sbjct: 140 -LAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNL-TPLEAEKLFSTLRLLKDMGV 197 Query: 215 TTVYVTHDQHEALLLADRLVVMREGR----IEQAGTPEEIYQAPRNLFVAEFLHPHPSLP 270 + VY+TH E + +ADR+ V+R GR IE G E + L V P P P Sbjct: 198 SVVYITHKLGEVVRVADRVTVLRRGRVSAVIEDVGRTSE--EELARLMVGTLPPPTPRPP 255 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 90.9 bits (224), Expect = 5e-20 Identities = 69/221 (31%), Positives = 103/221 (46%), Gaps = 12/221 (5%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGER-- 95 AL V+L + +LG G GK+T L I GLL P G +++ G+DIT LP +R Sbjct: 21 ALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIWQGRDITGLPAFKRVE 80 Query: 96 -RIGMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEH 154 I V + ++P LTV N+ ++ + + D +E + +L + Sbjct: 81 EGISHVPEGRGIFPRLTVYENLRVAASTRRAKEHFQDSLE-----QVYTIFPILKARRSQ 135 Query: 155 LSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDV 214 L+G LS GE+Q +AI R + + P L +MDEP L L + L V Sbjct: 136 LAG----TLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLASRLREELGV 191 Query: 215 TTVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQAPR 255 T + V + +L +ADR VM GRI G +E+ PR Sbjct: 192 TILLVEQNVGLSLKVADRGYVMETGRIVLEGASDELALDPR 232 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 90.1 bits (222), Expect = 8e-20 Identities = 57/232 (24%), Positives = 114/232 (49%), Gaps = 10/232 (4%) Query: 39 LTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLP-----PDQGKVLFDGKDITELPPG 93 L ++ T ++GP+G GKSTL+R+I L+ +G+V + ++ + P Sbjct: 21 LKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVMKEDPY 80 Query: 94 E--RRIGMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVK 151 R GMVFQ+ +PH+T+ N+ K ++ E++ ++ L + Sbjct: 81 NIRRYTGMVFQEPNPFPHMTIYENVA---IGPKLHGLAKNKKELDEIVEWALKMAHLWDE 137 Query: 152 LEHLSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSY 211 ++ +P LS G++QR+++ R + P + L+DEP +++D + + + Sbjct: 138 VKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKE 197 Query: 212 FDVTTVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQAPRNLFVAEFL 263 T + VTH +A ++D+++ + EGR+ + G +E+ PR+ +FL Sbjct: 198 EMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELVLRPRHELTKKFL 249 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 86.3 bits (212), Expect = 1e-18 Identities = 73/216 (33%), Positives = 105/216 (48%), Gaps = 14/216 (6%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGER-R 96 AL V+L + +LGP G GK+TL++I+ LL PD G G D+ R R Sbjct: 28 ALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANNVRSR 87 Query: 97 IGMVF-QDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLG-VKLEH 154 IG+V + ALY L+ N+ +FF S + E RR +LL V LE Sbjct: 88 IGVVLGGERALYWRLSGWDNL--WFF--------SQLYGIPPREAKRRVKELLEIVGLEE 137 Query: 155 LSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDV 214 + N S G KQR+ I R + DP + L+DEP LD E R ++ ++ Sbjct: 138 WAHVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVRE-GR 196 Query: 215 TTVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEI 250 T + TH EA L+DR+ ++ +GRI G PE++ Sbjct: 197 TVLLTTHYMVEAEELSDRVAIISKGRIVAEGPPEDL 232 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 85.5 bits (210), Expect = 2e-18 Identities = 64/217 (29%), Positives = 103/217 (47%), Gaps = 13/217 (5%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGERR- 96 A+ V+ ++ D ++GP G GK+TLLR++ G+L P G V G D+ E R Sbjct: 19 AVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVCGYDVWGDGWREARG 78 Query: 97 -IGMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEHL 155 IG QD P + + Y S + A + RR ++LG E + Sbjct: 79 LIGFAPQD----PPMARRMTGAEYITVVGGLLGLSPGV---ARREARRVLEMLG--FEDV 129 Query: 156 SGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDVT 215 GR LS G+++ + I + +P + ++DEP S LD RE L+ ++ T Sbjct: 130 LGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASLRK--AFKGRT 187 Query: 216 TVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQ 252 ++ +HD EA +DR+++M GR+ G P E+ Q Sbjct: 188 VLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPRELIQ 224 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 84.7 bits (208), Expect = 3e-18 Identities = 66/218 (30%), Positives = 112/218 (51%), Gaps = 16/218 (7%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDIT-ELPPGERR 96 AL V+ ++ + LGP G GK+T +RI+ LL PD G+ G D+ E +R Sbjct: 27 ALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAGFDVVKERWEVRKR 86 Query: 97 IG-MVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEHL 155 IG M+ + Y LT + N+ Y+F + + + E + + + L+G L L Sbjct: 87 IGVMLSVERGFYWKLTGRENL--YYFGRIY-----GIPQGELKSRIKEVLDLVG--LTDL 137 Query: 156 SGRFPP--NLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFD 213 G P +S G K R+ + R + +DP + ++DEP LD R +++L S + Sbjct: 138 GGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSLAS--E 195 Query: 214 VTTVYV-THDQHEALLLADRLVVMREGRIEQAGTPEEI 250 T+++ TH+ EA +++DR+ ++ GRI GTP+E+ Sbjct: 196 GRTIFITTHNMVEAEMISDRVGIIIGGRIAMEGTPDEL 233 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 84.3 bits (207), Expect = 4e-18 Identities = 71/253 (28%), Positives = 113/253 (44%), Gaps = 19/253 (7%) Query: 39 LTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGERRIG 98 L V+L + ++GP G GK+TL+++ GL D G+VL +G D P +G Sbjct: 20 LDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLLNGLDPWREPRAREGVG 79 Query: 99 MVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEHLSGR 158 +VF+ P+L ++ + + R + LE + Sbjct: 80 VVFER----PNLPSSMPVVEFL---------ESAAAIIGSSPSRVDWAIRAAGLEGHEWK 126 Query: 159 FPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDVTTVY 218 P LS+G KQR AI + +P + DEP S+LD R E R L L ++ + Sbjct: 127 TFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLNREHGLSLLV 186 Query: 219 VTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQAPRNLFVAEFLHPHPSLPAINLIPGD 278 +H E L +A R+ V+ GR+ G+PE+++ R +A +PSL A L Sbjct: 187 SSHVIVELLRVATRIYVLAGGRLAAEGSPEDLF---RRAGLARLRTSNPSLAAELL---R 240 Query: 279 LMGPEYREKVIGI 291 +G E RE +G+ Sbjct: 241 SLGFEAREDGLGV 253 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 83.6 bits (205), Expect = 8e-18 Identities = 81/310 (26%), Positives = 134/310 (43%), Gaps = 47/310 (15%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPP----DQGKVLFD-----GKDIT 88 AL V L + ++G +GCGKSTL R I +LP ++G ++ + D+ Sbjct: 24 ALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNTVDLV 83 Query: 89 ELPPGE------RRIGMVFQD--YALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEK 140 L E + + M+FQD AL P VK + + +K +E A+E Sbjct: 84 RLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDHVSGEK------RRVEKIAQEI 137 Query: 141 YRRTSQLLGVKLEHLSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREE 200 ++ L+ + ++P LS G KQR+ I + P + + DEP + LD ++ + Sbjct: 138 LKK---LMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQ 194 Query: 201 YRRQLKALLSYFDVTTVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQAPRNLFVA 260 + L L + T + +TH+ A +ADR+ VM G + + +++ P Sbjct: 195 ILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVVEVADVFSLFERP------ 248 Query: 261 EFLHPHPSLPAINLIPGDLMGPEYREKVIGIRPEDFSLRSPRAAGDYILPAQVVSVFKSP 320 LHP+ + + IP P E++ IR E SL P G P + P Sbjct: 249 --LHPY-TKGLLKSIP----KPHVDEEIEPIRGEPPSLADP-PPGCRFHP-------RCP 293 Query: 321 LAMEAAMRLK 330 M+ MR+K Sbjct: 294 YVMDVCMRIK 303 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 81.6 bits (200), Expect = 3e-17 Identities = 76/265 (28%), Positives = 110/265 (41%), Gaps = 42/265 (15%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGK------------ 85 A+ V+ +I ++G +GCGK+T + I L+ G+V F K Sbjct: 49 AVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERRGV 108 Query: 86 --------DITELP-----PGERRIGMVFQDY--ALYPHLTVKTNILSYFFFKKWTKQWS 130 D+ +P P R + +V+QD +L P T+K + S Sbjct: 109 KSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIH------S 162 Query: 131 DEMEMEAEEKYRRTSQLLGVKLEHLSG---RFPPNLSSGEKQRVAIGRCITRDPALFLMD 187 E EE R L VKL S R+P LS G++QRVAI R +P+L + D Sbjct: 163 IGNAREREEMVAR--MLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVAD 220 Query: 188 EPFSHLDQPLREEYRRQLKALLSYFDVTTVYVTHDQHEALLLADRLVVMREGRIEQAGTP 247 EP S LD +R E L + +++THD A + DR+ VM G+I + G Sbjct: 221 EPVSMLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDA 280 Query: 248 EEIYQAP----RNLFVAEFLHPHPS 268 I + P VA P PS Sbjct: 281 RRIIERPIHPYTKALVAAIPEPDPS 305 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 81.3 bits (199), Expect = 4e-17 Identities = 67/233 (28%), Positives = 105/233 (45%), Gaps = 15/233 (6%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGE--- 94 AL V + P T +LG G GK+TLL+ I G++ P +G++L DG ++ PG+ Sbjct: 20 ALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPKGPGDSLR 79 Query: 95 RRIGMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEH 154 I M Q+ +YP + ++ M AE S+ LG+ ++ Sbjct: 80 SGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAE-----ASEALGLNID- 133 Query: 155 LSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKAL--LSYF 212 R+ + E+QR+ + + + L+DEP +HL EE R L+A L+ Sbjct: 134 -PDRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTP---EEAARMLEAAGRLAAS 189 Query: 213 DVTTVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQAPRNLFVAEFLHP 265 + VTH EA+ ADRLV++R+G G P + L E L P Sbjct: 190 GAAVLLVTHRIGEAMEHADRLVILRKGVKVYEGPPPSSTEEVAKLMFGEVLAP 242 Score = 45.8 bits (107), Expect = 2e-06 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 14/159 (8%) Query: 44 LTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGERR---IGMV 100 L + V G G G+ L +I GL P +G++L G D+T PP RR +G++ Sbjct: 275 LEVRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRLGLGVI 334 Query: 101 FQD---YALYPHLTVKTNILSYFFFKK--WTKQWSDEMEMEAEEKYRRTSQLLGVKLEHL 155 ++ +AL P ++ NI + + W E AEE R +G+K Sbjct: 335 PEERLGHALVPGESIAFNIALSIHTARDGFIVDWR-YYEKLAEEMIRD----MGIKAVS- 388 Query: 156 SGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLD 194 + LS G QR+ + R + P L + P + LD Sbjct: 389 PRQMVDELSGGNMQRLVLARELWLKPRLLVAMNPAAGLD 427 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 79.7 bits (195), Expect = 1e-16 Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 14/215 (6%) Query: 37 FALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGERR 96 + L DV+LT+P V+GP G GK+TL R + GL D+G+V G+ P ER Sbjct: 22 WVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALLGE------PVERA 75 Query: 97 IGMVFQDYALYPHLTVK-TNILSYFFFKKWTKQWS-DEMEMEAEEKYRRTSQLLGVKLEH 154 G +F+ A P N+ + F + + + +++E EE R + LG +L Sbjct: 76 GGSLFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLEGYLEEASRLSG--LGGRL-- 131 Query: 155 LSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDV 214 G + S G ++R+ + + P+L ++DEP + LD RR LK V Sbjct: 132 --GERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERHGV 189 Query: 215 TTVYVTHDQHEALLLADRLVVMREGRIEQAGTPEE 249 T + +H+ +E + + ++ GRI +G+P E Sbjct: 190 TVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGE 224 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 78.6 bits (192), Expect = 2e-16 Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 18/215 (8%) Query: 39 LTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPG--ERR 96 L V+ ++ +LGP G GK+TLLR++ G++ P +G+V ++ PPG R Sbjct: 22 LRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRV-----EVCGSPPGRVRRM 76 Query: 97 IGMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLG-VKLEHL 155 +G + P L L Y + W + LG + + L Sbjct: 77 LGYAPASPEVDPRLKAVEVALLYRYGVSEGVAW-------GRRDWEEVLAALGEMGVGEL 129 Query: 156 SGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDVT 215 + R LSSG+++ V + + R P L L+DEP S LD L++L T Sbjct: 130 AWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRSLRG--RAT 187 Query: 216 TVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEI 250 VY THD A + AD ++++REG + G PE + Sbjct: 188 IVYTTHDP-LAAMAADSVIMLREGLLHAQGPPEAV 221 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 76.6 bits (187), Expect = 9e-16 Identities = 80/305 (26%), Positives = 130/305 (42%), Gaps = 23/305 (7%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGERR- 96 A+ V+ I +LGP G GK+T ++++ LL P G+ G I P RR Sbjct: 21 AVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWIAGYSIVREPGNVRRV 80 Query: 97 IGMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEHLS 156 IG+V QD ++ N+ Y + + S EA E+ R L L + Sbjct: 81 IGLVPQDLTADDEMSGWDNV--YIQARLYGLPSS-----EARERTREVLDYLD--LMEAA 131 Query: 157 GRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDVTT 216 R S G ++++ I + P + +DEP LD R R ++ L VT Sbjct: 132 HRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDL-KRSAVTI 190 Query: 217 VYVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQAPRNLFV-AEFLHPHPSLPAINLI 275 + TH EA +L+DR+ ++ GRI GTPEE+ + V E P + P + + Sbjct: 191 LLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEELKARVKGETVYIELKDPEYTEPLVLAL 250 Query: 276 PGDL-MGPEYREKVIGIRPEDFSLRSPRAAGDYILPAQVVSVFKSPLAMEAAMRLKVKDR 334 L + P E + +R + D +LP ++ P+ + R ++D Sbjct: 251 KEKLGLEPSVVEGKVAVRVD---------RADTLLPELARALNGFPVKAISITRATLED- 300 Query: 335 VFVEV 339 VF+E+ Sbjct: 301 VFIEL 305 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 76.6 bits (187), Expect = 9e-16 Identities = 57/220 (25%), Positives = 107/220 (48%), Gaps = 20/220 (9%) Query: 39 LTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVL-----FDGKDITELPPG 93 + +++L++ T ++GP G GK+TLL+ + G++ ++G+V +G+DIT P Sbjct: 21 IKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNREPD 80 Query: 94 E---RRIGMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGV 150 E R + V + ++ LT + N++S + ++ D++ + R + LG Sbjct: 81 EIARRGVIYVMEGRRIFKELTTEENLVSVAYAAGASR---DDIR-SVLSYFPRLKERLGE 136 Query: 151 KLEHLSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLS 210 K +LSG GE+Q +AI + P L ++DEP L + + +K L Sbjct: 137 KAGNLSG--------GEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHR 188 Query: 211 YFDVTTVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEI 250 +T + + +AL ++D V+ GRI G+ EE+ Sbjct: 189 EEGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEEL 228 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 76.3 bits (186), Expect = 1e-15 Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 19/219 (8%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGERR- 96 AL V+ ++ ++GP G GK+TL II G+ PD+G+V++ G DIT P R Sbjct: 19 ALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYKGVDITGWPAYRRSR 78 Query: 97 --IGMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEH 154 I FQ +LTV N++ + + + E MEA + + Sbjct: 79 AGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAMEA------------IDMVG 126 Query: 155 LSGR---FPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSY 211 L+G+ +L+ EK+R+ + R + P L L+DE + L +P + +S Sbjct: 127 LAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGL-RPREVDDLVYTLLEISK 185 Query: 212 FDVTTVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEI 250 +T + V H + A+R++V+ G GTP E+ Sbjct: 186 RGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREV 224 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 75.9 bits (185), Expect = 2e-15 Identities = 66/217 (30%), Positives = 96/217 (44%), Gaps = 16/217 (7%) Query: 39 LTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGERRIG 98 L+ VNL ++GP G GK+T L+ I GL+ P +G+V DG + T P R Sbjct: 18 LSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLDGFEATGRPEMVGRYA 77 Query: 99 MVFQDYALYPHL---TVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEHL 155 P L TV+ + + + T+ A E+ LG++ E L Sbjct: 78 GYVPQNPSAPKLSPMTVREFVETSLRLRGVTR---------ARERAVEVLHTLGIRGEVL 128 Query: 156 SGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDVT 215 R LS G QRV I R I DP + +MDEP + +D R E R + L + Sbjct: 129 ESRL-WELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAGLAR--ERL 185 Query: 216 TVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQ 252 + +HD L D +VV+ I +G PEE+Y+ Sbjct: 186 VLMTSHDPSLLLGHTDIIVVINRDLI-ASGPPEEVYR 221 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 74.7 bits (182), Expect = 4e-15 Identities = 66/271 (24%), Positives = 122/271 (45%), Gaps = 50/271 (18%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPG---- 93 A+ V+L++ V+G +G GK+TL + I GL P G V D D EL Sbjct: 29 AVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFID-IDKGELEEAVSIY 87 Query: 94 ---ERRIGMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYR------RT 144 +R + +D Y + +KT+ Y+ + K++ +++M ++ Y + Sbjct: 88 EALKRGENVQREDIKRYRKI-IKTHD-PYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMKV 145 Query: 145 SQLLGVKL--------------------------EHLSGRFPPNLSSGEKQRVAIGRCIT 178 +++G + + + R+P LS G++QRVAI R + Sbjct: 146 GEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIARALA 205 Query: 179 RDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDVTTVYVTHDQHEALLLADRLVVMRE 238 +P + ++DEP S LD ++ + R L+ L + +T + +THD ++ +VVM Sbjct: 206 LNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMYS 265 Query: 239 GRIEQAGTPEEIYQAPRNLFVAEFLHPHPSL 269 G+I ++ AP+++ LHP+ L Sbjct: 266 GKIMES--------APKHILFTNPLHPYTKL 288 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 72.0 bits (175), Expect = 2e-14 Identities = 70/215 (32%), Positives = 96/215 (44%), Gaps = 20/215 (9%) Query: 37 FALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGERR 96 + L V+L P T++ GPTG GKST+LR+ GL G L + P Sbjct: 18 WVLRGVSLEAPRG-ITLLAGPTGGGKSTILRVAAGLATRIYGGYLRGEVEARGKPV---- 72 Query: 97 IGMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEHLS 156 +V QDY L+ L Y + W EA + R ++ LG+ E L Sbjct: 73 --LVPQDYDLFILSLTPREELEYCYEASGLPPW------EARREAVRLAEELGI--EDLL 122 Query: 157 GRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDVTT 216 R LS+GE+QRVAI + + LMDEP ++ D PL E L LL DV Sbjct: 123 DRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQD-PLGVE---SLIRLLRRLDVEG 178 Query: 217 VYVT-HDQHEALLLADRLVVMREGRIEQAGTPEEI 250 V V H H L A + ++ +GR +Q G E + Sbjct: 179 VVVAEHRVHYLLPAASSVYLVYDGRAKQLGPGEAV 213 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 72.0 bits (175), Expect = 2e-14 Identities = 62/213 (29%), Positives = 96/213 (45%), Gaps = 34/213 (15%) Query: 39 LTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGERRIG 98 L DV L+IP T +LG G GK+TLL++ LL PD+G V G RR+G Sbjct: 7 LRDVTLSIPRG-VTAILGANGSGKTTLLKLAARLLKPDRGSV-----------EGPRRVG 54 Query: 99 MVFQD-YALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEHLSG 157 Q+ Y + TV ++++ A + L LE+ S Sbjct: 55 AALQNPYLGFLGPTV-----------------AEDLARTAGGRGEALKLLREAGLEYASE 97 Query: 158 RFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDVTTV 217 R P LS GE + +++ I+ P ++DEP S LD +R L +L++ V + Sbjct: 98 RSPYTLSMGEARILSVLMAISWGPEAVVIDEPTSGLD----GSGKRWLASLIARLGVPVL 153 Query: 218 YVTHDQHEALLLADRLVVMREGRIEQAGTPEEI 250 HD A +A V++R+GR+ +G E + Sbjct: 154 VAGHDIDFAAAVAGWAVILRDGRVRVSGDMERV 186 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 70.1 bits (170), Expect = 9e-14 Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 16/218 (7%) Query: 39 LTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDI----TELPPGE 94 L V+L++ V+ G G GK+T LR++ GLL D G+ G D E GE Sbjct: 30 LRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPWGGGFERVKGE 89 Query: 95 RRIGMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEH 154 +G + +D ++Y LT NIL F+ + W D EE G+ E Sbjct: 90 --VGYLPEDASVYERLTGMENIL---FYARLYSGWRD-----VEELVENAVFYSGLSRED 139 Query: 155 LSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDV 214 L+ R S G K+R+ +G + P L ++DEP S +D P+ +++ LS Sbjct: 140 LARR-AGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVD-PIASNRIKKILRGLSREGR 197 Query: 215 TTVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQ 252 + THD A +ADR+ ++ G +G P + + Sbjct: 198 AILVTTHDLALAEEIADRVTIIHGGSTVASGPPYRLVE 235 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 68.9 bits (167), Expect = 2e-13 Identities = 75/277 (27%), Positives = 112/277 (40%), Gaps = 38/277 (13%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPD----QGKVLFDGK-----DIT 88 A+ DV+ I T ++G TGCGKS R + L+ P +GK+ + + DI Sbjct: 28 AIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGRIVEGKIYYYPEPGRRVDIM 87 Query: 89 ELPPGERR------IGMVFQD--YALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEK 140 L E R I +FQD AL P T+ ++ + E Sbjct: 88 SLDEKELRRIRGEEIAYIFQDPSAALDPLYTIG--------YQVGETMLAHGRVRSLREG 139 Query: 141 YRRTSQLLGVKL----EHLSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQP 196 RR +L L E +P LS G KQR IG ++ P L + DEP + LD Sbjct: 140 VRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLIADEPTTALDVT 199 Query: 197 LREEYRRQLKALLSYFDVTTVYVTHDQHEALLLADRLVVMREGRIEQAGTPEEIYQAPRN 256 ++ + L L +T + +TH+ DR+ VM G I + +E++ P Sbjct: 200 IQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEEAPVDELFSNP-- 257 Query: 257 LFVAEFLHPHPSLPAINLIPGDLMGPEYREKVIGIRP 293 LHP+ + I +P L E E + G P Sbjct: 258 ------LHPY-TRALIRAVPNPLAKIENLEHIPGTVP 287 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 65.9 bits (159), Expect = 2e-12 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 5/161 (3%) Query: 39 LTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGG--LLPPDQGKVLFDGKDITELPPGERR 96 L V+ + V+GP G GKS+L +I G + +G +L DG+ I ELPP ER Sbjct: 18 LNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDILLDGESIKELPPEERA 77 Query: 97 IGMVF---QDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLE 153 + +F QD P + + + I+++ + + S + + ++ + LG+ E Sbjct: 78 LKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKIVKRMYEYATKLGLDRE 137 Query: 154 HLSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLD 194 L+ S GEK+R + + + DP + ++DEP S LD Sbjct: 138 ILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLD 178 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 65.1 bits (157), Expect = 3e-12 Identities = 64/217 (29%), Positives = 96/217 (44%), Gaps = 20/217 (9%) Query: 29 LLGPREPHFALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDIT 88 +LG R + L V+L + VV G G GK+TLLR+ GL P +G+V + Sbjct: 13 MLGGR---WVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRVSWG----- 64 Query: 89 ELPPGERR-IGMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQL 147 P G R +G V +Y LTV N+ FF + + AE +L Sbjct: 65 -CPRGPRGCVGYVGHTPMVYGDLTVWENV---EFFSSLHGGSLGDYPLAAE-----AWRL 115 Query: 148 LGVKLEHLSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKA 207 LG LE LS G ++R+ + R + +P L L+DE F+ LDQ E R L+ Sbjct: 116 LG--LEKYGSHLASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLLRL 173 Query: 208 LLSYFDVTTVYVTHDQHEALLLADRLVVMREGRIEQA 244 L + + L LA R+ +++G + +A Sbjct: 174 ALGEGLALLMTTPLLEPRYLGLASRVYTLQDGLLAEA 210 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 55.8 bits (133), Expect = 2e-09 Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 32/214 (14%) Query: 54 VLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGER----RIGMVFQDYALYPH 109 VLGP G GK+TLL+ I GL+ P G++L +G + PG RIG V P Sbjct: 34 VLGPNGAGKTTLLKTILGLVKPSAGEILVEG--VNPRSPGFEKLLPRIGYV-------PE 84 Query: 110 LTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGV--KLEHLSGRFPPNLSSGE 167 L V + + + +EA + R +++G+ + E G+ LS G Sbjct: 85 LPVVPLWTTPCILLETLARLEGYTSVEARVRAREALEVVGLAGECETPIGK----LSKGA 140 Query: 168 KQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYR-RQLKALLSYFDVTTVYVTHDQHEA 226 ++RV + + + L ++DEP+S LD YR R+L ++ T + +H E Sbjct: 141 RKRVLVAQAFIGERELLVLDEPYSGLDP--EWVYRVRELLRTVAREGATVIVSSHILREL 198 Query: 227 LLLADRLVVMRE-----GRIEQ-----AGTPEEI 250 +A ++V++ G IE+ +GTP I Sbjct: 199 EDIATHVLVLKTDQLFYGSIEELRAWLSGTPRII 232 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 53.1 bits (126), Expect = 1e-08 Identities = 53/206 (25%), Positives = 86/206 (41%), Gaps = 21/206 (10%) Query: 38 ALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPG---- 93 AL V+ ++ LGP G GK+T +R++ G P G G ++ PG Sbjct: 19 ALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARVFGVELYN--PGASGV 76 Query: 94 ERRIGMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLE 153 RR+G V ++ Y ++ +L Y W + + R + + LE Sbjct: 77 RRRVGYVPGEFEFYGGVS-GGRMLDY---------WCRLVGGCSRGVVRELLEAFPLPLE 126 Query: 154 HLSGRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFD 213 G + S G KQ +A+ + +P L +MDEP + LD PL + Sbjct: 127 RAVGTY----SRGMKQMLALVMAFSHEPDLVVMDEPTTGLD-PLARGRVLDFVRSKAREG 181 Query: 214 VTTVYVTHDQHEALLLADRLVVMREG 239 VT + +H E +ADR+ ++R G Sbjct: 182 VTVFFSSHVLSEVQRVADRVGLLRSG 207 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 51.2 bits (121), Expect = 4e-08 Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 18/200 (9%) Query: 37 FALTDVNLTIPDARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGERR 96 F LT + V GP G GK+T +R + G L P +G V P Sbjct: 371 FTLTSGEGALYGGEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVY----------PYVED 420 Query: 97 IGMVFQDYALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEHLS 156 + + ++ + P + + + A + + ++L+ L Sbjct: 421 LRVSYKPQYISPESLPDATVEQVLK--------AANPAILAPGSWLNLELVKRMRLDKLL 472 Query: 157 GRFPPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDVTT 216 R LS GE Q+VA+ + R+ ++L+DEP ++LD R R ++ ++ + Sbjct: 473 ERRVRTLSGGELQKVAVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAA 532 Query: 217 VYVTHDQHEALLLADRLVVM 236 + V HD ++DR++++ Sbjct: 533 LVVEHDLMILDYVSDRIMLV 552 Score = 47.8 bits (112), Expect = 5e-07 Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 10/190 (5%) Query: 44 LTIP-DARTTVVLGPTGCGKSTLLRIIGGLLPPDQGKVLFDGKDITELPPGERRIGMVFQ 102 L IP + + +LG G GK+T LRI+ G L P+ G+V + E+ +R G Q Sbjct: 100 LPIPREGQVVGLLGRNGTGKTTALRILAGELKPNLGRVEGGEPEWDEIL--KRFRGSELQ 157 Query: 103 DY---ALYPHLTVKTNILSYFFFKKWTKQWSDEMEMEAEEKYRRTSQLLGVKLEHLSGRF 159 Y + L V I + K ++ A+E+ V L+ + R Sbjct: 158 TYFRKLVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGVALELAEQVGLDKVFDRD 217 Query: 160 PPNLSSGEKQRVAIGRCITRDPALFLMDEPFSHLDQPLREEYRRQLKALLSYFDVTTVYV 219 LS GE Q++ I ++RD +++ DEP S+LD +RE R ++ L++ YV Sbjct: 218 VRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLD--IRE--RMRMARLIAGAARPGAYV 273 Query: 220 THDQHEALLL 229 +H+ +L Sbjct: 274 MVVEHDLAVL 283 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 411,740 Number of Sequences: 1700 Number of extensions: 19564 Number of successful extensions: 181 Number of sequences better than 1.0e-04: 40 Number of HSP's better than 0.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 85 Number of HSP's gapped (non-prelim): 49 length of query: 380 length of database: 492,079 effective HSP length: 78 effective length of query: 302 effective length of database: 359,479 effective search space: 108562658 effective search space used: 108562658 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718869|ref|YP_003874401.1| hypothetical protein STHERM_c11870 [Spirochaeta thermophila DSM 6192] (100 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,478 Number of Sequences: 1700 Number of extensions: 1353 Number of successful extensions: 1 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 100 length of database: 492,079 effective HSP length: 64 effective length of query: 36 effective length of database: 383,279 effective search space: 13798044 effective search space used: 13798044 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718870|ref|YP_003874402.1| hypothetical protein STHERM_c11880 [Spirochaeta thermophila DSM 6192] (431 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 440,544 Number of Sequences: 1700 Number of extensions: 19470 Number of successful extensions: 64 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 0 length of query: 431 length of database: 492,079 effective HSP length: 79 effective length of query: 352 effective length of database: 357,779 effective search space: 125938208 effective search space used: 125938208 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718871|ref|YP_003874403.1| hypothetical protein STHERM_c11890 [Spirochaeta thermophila DSM 6192] (255 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.141 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 229,401 Number of Sequences: 1700 Number of extensions: 9097 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 0 length of query: 255 length of database: 492,079 effective HSP length: 75 effective length of query: 180 effective length of database: 364,579 effective search space: 65624220 effective search space used: 65624220 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718872|ref|YP_003874404.1| hypothetical protein STHERM_c11900 [Spirochaeta thermophila DSM 6192] (239 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.134 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 215,378 Number of Sequences: 1700 Number of extensions: 8711 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 239 length of database: 492,079 effective HSP length: 74 effective length of query: 165 effective length of database: 366,279 effective search space: 60436035 effective search space used: 60436035 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718873|ref|YP_003874405.1| hypothetical protein STHERM_c11910 [Spirochaeta thermophila DSM 6192] (189 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 132,355 Number of Sequences: 1700 Number of extensions: 4287 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 189 length of database: 492,079 effective HSP length: 72 effective length of query: 117 effective length of database: 369,679 effective search space: 43252443 effective search space used: 43252443 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718874|ref|YP_003874406.1| hypothetical protein STHERM_c11920 [Spirochaeta thermophila DSM 6192] (670 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 592,175 Number of Sequences: 1700 Number of extensions: 24641 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 0 length of query: 670 length of database: 492,079 effective HSP length: 83 effective length of query: 587 effective length of database: 350,979 effective search space: 206024673 effective search space used: 206024673 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718875|ref|YP_003874407.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM 6192] (198 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 221,247 Number of Sequences: 1700 Number of extensions: 9701 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 198 length of database: 492,079 effective HSP length: 72 effective length of query: 126 effective length of database: 369,679 effective search space: 46579554 effective search space used: 46579554 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718876|ref|YP_003874408.1| hypothetical protein STHERM_c11940 [Spirochaeta thermophila DSM 6192] (94 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,290 Number of Sequences: 1700 Number of extensions: 3299 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 94 length of database: 492,079 effective HSP length: 62 effective length of query: 32 effective length of database: 386,679 effective search space: 12373728 effective search space used: 12373728 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718877|ref|YP_003874409.1| hypothetical protein STHERM_c11950 [Spirochaeta thermophila DSM 6192] (606 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430994|ref|NP_147143.2| phospho-sugar mutase [Aeropyrum pe... 80 1e-16 gi|118431870|ref|NP_148606.2| phospho-sugar mutase [Aeropyrum pe... 64 1e-11 >gi|118430994|ref|NP_147143.2| phospho-sugar mutase [Aeropyrum pernix K1] Length = 464 Score = 80.5 bits (197), Expect = 1e-16 Identities = 123/488 (25%), Positives = 189/488 (38%), Gaps = 83/488 (17%) Query: 114 VAIAYDSRRYSRVFAREAALVLCGNGIKTYLFKDLRPTPELSFTVRHLGTTAGIVITASH 173 + + D+R +F A L G++ +L L PTP L VR G AG+++TASH Sbjct: 42 ILVGRDTRSGGELFEGLVAAGLAFEGVEVHLAGTL-PTPALQLYVRDHGYDAGVMVTASH 100 Query: 174 NPPQYNGYKVYWSDGGQVVPPHDKGI---IEEVRKVTSEIRSMPEEEALARGLLTYIGEE 230 NPP+YNG KV DG +V ++GI E + T E RS+ + + Y Sbjct: 101 NPPEYNGIKVVGGDGVEVPRDVEEGIEALFWEGKFSTVEWRSVAGQPKRVHDAVDYY--- 157 Query: 231 VDRAYFDAVRRQVIRPDLFKEHGGEVSVVYTPLHGTGRMPVETVLRGFGIDVFTVPEQAE 290 V R V F + GG VV G +L+ G +P + Sbjct: 158 --------VNRVVENVSAFTQRGGGERVVVDCGGGATSFTTVEILKRLG--ARPIPLSCK 207 Query: 291 PDGDFPTVEYPNPXXXXXXXXXXXYARKRKADVVMATDPDSDRLGIAVPDGHDYVLITGN 350 PD F + + P P R A + D D DR + G ++ G+ Sbjct: 208 PDPLFSSRD-PEP-TPDTLGPAASLVRSSGAVFGVGHDADGDRAIVIDDRGR---VVWGD 262 Query: 351 QLGALLADYIFSSKKEMGSLPERPAFVKSIVTTNLQRKIVESY----GVECHEVLTGFKY 406 + GALLA ++ E+G L + P V + V++++ +VE Y G+E G Sbjct: 263 RSGALLAGFV----AEVG-LAKGPLKVYTGVSSSI---VVEDYLRPRGIEVVWTPVGAPI 314 Query: 407 FAAKIREFEEKGGPQYVFGTEESYGFLVGTDVRDKDAVSASILTVEMTLYHRVQGKTLLQ 466 A R +GG + EE+ G++ +D + L + M R G++L Sbjct: 315 IA---RAILTQGG---IAAFEENGGYMHPPHQYVRDGGMKAALLLAML---RATGESLSS 365 Query: 467 RLEELYRQHGYFEEILTTKTFPGEKGIQVMRGIMERLRNDPPLAFGDLKVVEIRDYLDGT 526 L+ L H +I ++ E+ + + + + + Sbjct: 366 LLDRLPSYHPIKTKIPASR----EEALCAVEAVKQEFQ---------------------- 399 Query: 527 TLYLPSGERKKNIDLPSSNVLQFVLEDGSVVSARPSGTEP--KIKFYASCTSPVKDSLEE 584 GER ID V+ +G V RPSGTEP +I A + E Sbjct: 400 ------GERMVTIDGVK------VIGEGYWVLVRPSGTEPVVRIMLEARSEEEARALFER 447 Query: 585 AKREVKEK 592 R VKEK Sbjct: 448 VLRAVKEK 455 >gi|118431870|ref|NP_148606.2| phospho-sugar mutase [Aeropyrum pernix K1] Length = 489 Score = 63.5 bits (153), Expect = 1e-11 Identities = 68/257 (26%), Positives = 110/257 (42%), Gaps = 21/257 (8%) Query: 90 PLMVRRATQGLANYILSQGLKDPSVAIAYDSRRYSRVFAREAALVLCGNGIKTYLFKDLR 149 PL+ + LA Y+ S G S+ +A+D R S + A AA + G+ L + Sbjct: 23 PLLAYQVGLALAGYVGSGG----SIVVAHDVRTTSPLLASMAASGVMAGGVDAILVGQV- 77 Query: 150 PTPELSFTVRHLGTTAGIVITASHNPPQYNGYKVYWSDGGQVVPPHDKGIIEEVRKVTSE 209 P P S++V G+ +GI++TASHNPP NG K+ S G ++ + EE+ + + Sbjct: 78 PLPAASYSVVRSGSKSGIMVTASHNPPWDNGIKIVDSRGMELTRSEE----EELESIIED 133 Query: 210 IRSMPEEEALARGLLTYIGEEVDRAYFDAVRRQVIRPDLFKEHGGEVSVVYTPLHGTGRM 269 + + G+L E ++ D V R + + +S+ +G Sbjct: 134 GVEGFLADWNSVGILRIEKEMLNYYMEDIVARTAVDGET------SLSMAVDCANGAASG 187 Query: 270 PVETVLRGFGI-DVFTVPEQAEPDGDFPTVEYPNPXXXXXXXXXXXYARKRKADVVMATD 328 VLR G+ V+T PDG FP +P P + +A D Sbjct: 188 VTPIVLRSIGVRRVYTF--NCHPDGYFPG-RHPEPRPDVLEPFIKS-SSILGVQAFIAHD 243 Query: 329 PDSDRLGIAVPDGHDYV 345 D+DR + VP G+ +V Sbjct: 244 GDADRTALGVP-GYGFV 259 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 603,347 Number of Sequences: 1700 Number of extensions: 27387 Number of successful extensions: 93 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89 Number of HSP's gapped (non-prelim): 4 length of query: 606 length of database: 492,079 effective HSP length: 82 effective length of query: 524 effective length of database: 352,679 effective search space: 184803796 effective search space used: 184803796 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718878|ref|YP_003874410.1| NOL1/NOP2/sun family protein [Spirochaeta thermophila DSM 6192] (277 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 202,352 Number of Sequences: 1700 Number of extensions: 6104 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 277 length of database: 492,079 effective HSP length: 76 effective length of query: 201 effective length of database: 362,879 effective search space: 72938679 effective search space used: 72938679 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718879|ref|YP_003874411.1| hypothetical protein STHERM_c11970 [Spirochaeta thermophila DSM 6192] (552 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 551,853 Number of Sequences: 1700 Number of extensions: 24688 Number of successful extensions: 117 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117 Number of HSP's gapped (non-prelim): 0 length of query: 552 length of database: 492,079 effective HSP length: 81 effective length of query: 471 effective length of database: 354,379 effective search space: 166912509 effective search space used: 166912509 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718880|ref|YP_003874412.1| hypothetical protein STHERM_c11980 [Spirochaeta thermophila DSM 6192] (1122 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,107,903 Number of Sequences: 1700 Number of extensions: 48993 Number of successful extensions: 110 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110 Number of HSP's gapped (non-prelim): 0 length of query: 1122 length of database: 492,079 effective HSP length: 87 effective length of query: 1035 effective length of database: 344,179 effective search space: 356225265 effective search space used: 356225265 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718881|ref|YP_003874413.1| excinuclease ABC subunit A [Spirochaeta thermophila DSM 6192] (981 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 57 2e-09 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 55 6e-09 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 55 1e-08 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 50 3e-07 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 49 8e-07 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 48 1e-06 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 46 5e-06 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 45 6e-06 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 45 6e-06 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 45 8e-06 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 44 1e-05 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 44 2e-05 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 44 2e-05 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 44 2e-05 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 42 7e-05 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 42 7e-05 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 42 7e-05 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 42 7e-05 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 57.0 bits (136), Expect = 2e-09 Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 40/165 (24%) Query: 815 LEIRYRGKTIYDVLEMT----VEEAY-----EFFSPIPPVERRLKTLLDVGLSYIKLGQP 865 LE +R T+Y+ L + E+ + E FS P ++ RL GQ Sbjct: 88 LENIFRELTVYENLRLAGYDLPEDVFRDRLEEVFSMFPRLKERL-------------GQK 134 Query: 866 ATTLSGGEAQRVKLALELSRRSTGRTLYLLDEPTTGLHFADVKKLLDVLNRLVDMGNTVV 925 A TLSGGE Q + +A+ + R+ ++L+DEPT GL K++L + L G TVV Sbjct: 135 AGTLSGGERQMLAMAIGIMRKPK---VFLIDEPTAGLSPKLAKEVLSYVRILNKEGYTVV 191 Query: 926 LIEHNLDVIKQADWIIDLGPEGGEKG-----GRIVVEGRPEDVAA 965 L+E N + E G+KG GRI +G E++ A Sbjct: 192 LVEQN----------VKASLEIGDKGVLVVNGRIAFDGPAEELLA 226 Score = 45.1 bits (105), Expect = 8e-06 Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 7/103 (6%) Query: 521 LERRASTLSGGEAQRIRLATQIGSSLVGVLYVLDEPTIGLHQRDNQRLIDTLKYLRDLGN 580 L ++A TLSGGE Q + +A IG ++++DEPT GL + + ++ ++ L G Sbjct: 131 LGQKAGTLSGGERQMLAMA--IGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVRILNKEGY 188 Query: 581 TLIVVEHDEQTLRTADYIVDLGPGAGMHGGKVVAQGTVEEVTA 623 T+++V EQ ++ + I D G + G++ G EE+ A Sbjct: 189 TVVLV---EQNVKASLEIGD--KGVLVVNGRIAFDGPAEELLA 226 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 55.5 bits (132), Expect = 6e-09 Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 17/193 (8%) Query: 508 LSFMKNVGLEYLTLERRASTLSGGEAQRIRLATQIGSSLVGVLYVLDEPTIGLHQRDNQR 567 L + +GLE + L + + L G QR+ + + + +LDEPT L + ++ Sbjct: 128 LETAERLGLE-IDLAKTVADLPMGARQRVEIIKALSGG--AKVLILDEPTSNLTPLEAEK 184 Query: 568 LIDTLKYLRDLGNTLIVVEHD-EQTLRTADYIVDLGPGAGMHGGKVVAQGTVEEVTAVPE 626 L TL+ L+D+G +++ + H + +R AD + L G +E+V E Sbjct: 185 LFSTLRLLKDMGVSVVYITHKLGEVVRVADRVTVLRRGR--------VSAVIEDVGRTSE 236 Query: 627 SLTGQYLAGTLKIEVPSSRRAGNGNALVLKGAK-----EHNLKNITVRFPLGMFVVITGV 681 + + GTL P L ++G ++ +++ G V I GV Sbjct: 237 EELARLMVGTLPPPTPRPPGKVGRELLSVRGVSVVVDGVERVREVSLEVREGEIVGIAGV 296 Query: 682 SGSGKSTLLNDIL 694 +G+G+ L++ I+ Sbjct: 297 AGNGQEELVDAII 309 Score = 48.1 bits (113), Expect = 1e-06 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 5/93 (5%) Query: 847 RRLKTLLDVGLSYIKLGQPATTLSGGEAQRVKLALELSRRSTGRTLYLLDEPTTGLHFAD 906 R L+T +GL I L + L G QRV++ LS G + +LDEPT+ L + Sbjct: 126 RTLETAERLGLE-IDLAKTVADLPMGARQRVEIIKALSG---GAKVLILDEPTSNLTPLE 181 Query: 907 VKKLLDVLNRLVDMGNTVVLIEHNL-DVIKQAD 938 +KL L L DMG +VV I H L +V++ AD Sbjct: 182 AEKLFSTLRLLKDMGVSVVYITHKLGEVVRVAD 214 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 54.7 bits (130), Expect = 1e-08 Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 10/108 (9%) Query: 523 RRASTLSGGEAQRIRLATQIGSSLVGVLYVLDEPTIGLHQRDNQRLIDTLKYL-RDLGNT 581 RR + LSGG+ QR+ LA I + + +LDEP L + QRL+ LK L R LG+T Sbjct: 134 RRVTGLSGGQQQRVALARAI--AYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQRKLGST 191 Query: 582 LIVVEHDE-QTLRTADYIVDLGPGAGMHGGKVVAQGTVEEVTAVPESL 628 +I V HD+ + + AD +V M G++V GT EV P ++ Sbjct: 192 MIYVTHDQWEAMELADTLVI------MRDGRIVQHGTPSEVYTRPANV 233 Score = 48.1 bits (113), Expect = 1e-06 Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 14/124 (11%) Query: 845 VERRLKTLLD-VGLSYIK--LGQPATTLSGGEAQRVKLALELSRRSTGRTLYLLDEPTTG 901 V R+++ L+ VGL+ + +G+ T LSGG+ QRV LA ++ + LLDEP + Sbjct: 112 VRRQVEWALETVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEP---PVLLLDEPLSH 168 Query: 902 LHFADVKKLLDVLNRLV-DMGNTVVLIEHN-LDVIKQADWIIDLGPEGGEKGGRIVVEGR 959 L F ++LL L RL +G+T++ + H+ + ++ AD ++ + + GRIV G Sbjct: 169 LDFKIRQRLLAELKRLQRKLGSTMIYVTHDQWEAMELADTLVIM------RDGRIVQHGT 222 Query: 960 PEDV 963 P +V Sbjct: 223 PSEV 226 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 49.7 bits (117), Expect = 3e-07 Identities = 39/125 (31%), Positives = 70/125 (56%), Gaps = 14/125 (11%) Query: 514 VGLEYLTLERRASTLSGGEAQRIRLATQI--GSSLVGVLYVLDEPTIGLHQRDNQRLIDT 571 VGL+++ +RR+ LSGG+ + + +A I G+ ++ ++DEP G++ R +++ Sbjct: 141 VGLDHMW-DRRSGELSGGQMKLLEIARAIMKGAEMI----IMDEPAAGVNPRLAGSIMER 195 Query: 572 LKYL-RDLGNTLIVVEHDEQTLRTADYIVDLGPGAGMHGGKVVAQGTVEEVTAVPESLTG 630 +KYL R+ G T +++EH ++ +Y+ + M GKV+A G +EV P L Sbjct: 196 IKYLAREKGITFLIIEHRIGLVK--EYVDRV---YAMSMGKVIASGKPDEVLNNPVVLE- 249 Query: 631 QYLAG 635 YL G Sbjct: 250 SYLGG 254 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 48.5 bits (114), Expect = 8e-07 Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 10/120 (8%) Query: 508 LSFMKNVGLEYLTLERRASTLSGGEAQRIRLATQIGSSLVGVLYVLDEPTIGLHQRDNQR 567 +S + VGL L R SGG+ QRI +A + +L VLDEPT L + Sbjct: 155 VSLLYQVGLNETHLYRYPHEFSGGQRQRIAIARVL--ALKPEFIVLDEPTSALDVSVQAQ 212 Query: 568 LIDTLKYL-RDLGNTLIVVEHDEQTLR-TADYIVDLGPGAGMHGGKVVAQGTVEEVTAVP 625 +++ LK L R T + + HD +R +DYI A M+ GK+V G EEV P Sbjct: 213 ILNLLKDLQRKYSLTYLFISHDLGVVRYMSDYI------AVMYLGKIVEFGEAEEVFEKP 266 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 48.1 bits (113), Expect = 1e-06 Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 12/135 (8%) Query: 846 ERRLKTLLDVGLSYIKLGQPATTLSGGEAQRVKLALELSRRSTGRTLYLLDEPTTGLHFA 905 ER +K L +G+ + PA LSGG+ QR LA L+ + LLDEPT+ L Sbjct: 119 ERAVKYLSMLGIEDLAHRHPAR-LSGGQQQRAALARALAMEPD---ILLLDEPTSALDPE 174 Query: 906 DVKKLLDVLNRLVDMGNTVVLIEHNLD-VIKQADWIIDLGPEGGEKGGRIVVEGRPEDVA 964 +L+ L R+ +G ++++ H D +K AD + + + G + EG+P ++ Sbjct: 175 SRADVLEALFRVATLGKAMIVVTHEADFAVKVADRMAFM------EDGIVKEEGKPSELV 228 Query: 965 ACSASYTGRYLREVL 979 + R+L +L Sbjct: 229 E-GSERVRRFLESIL 242 Score = 42.4 bits (98), Expect = 5e-05 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 4/105 (3%) Query: 508 LSFMKNVGLEYLTLERRASTLSGGEAQRIRLATQIGSSLVGVLYVLDEPTIGLHQRDNQR 567 + ++ +G+E L R + LSGG+ QR LA + ++ + +LDEPT L Sbjct: 122 VKYLSMLGIEDLA-HRHPARLSGGQQQRAALARAL--AMEPDILLLDEPTSALDPESRAD 178 Query: 568 LIDTLKYLRDLGNTLIVVEHD-EQTLRTADYIVDLGPGAGMHGGK 611 +++ L + LG +IVV H+ + ++ AD + + G GK Sbjct: 179 VLEALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGK 223 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 45.8 bits (107), Expect = 5e-06 Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 10/125 (8%) Query: 841 PIPPVERRLKTLLD-VGLSYIK-LGQPATTLSGGEAQRVKLALELSRRSTGRTLYLLDEP 898 P ++ R+K +LD VGL+ + +P +S G R+ LA L + + +LDEP Sbjct: 117 PQGELKSRIKEVLDLVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPE---VLILDEP 173 Query: 899 TTGLHFADVKKLLDVLNRLVDMGNTVVLIEHNLDVIKQADWIIDLGPEGGEKGGRIVVEG 958 T GL A + + V+ L G T+ + HN+ +A+ I D G GGRI +EG Sbjct: 174 TLGLDPASARTIRGVIRSLASEGRTIFITTHNM---VEAEMISD--RVGIIIGGRIAMEG 228 Query: 959 RPEDV 963 P+++ Sbjct: 229 TPDEL 233 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 45.4 bits (106), Expect = 6e-06 Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 23/136 (16%) Query: 838 FFSP---IPPVE--RRLKTLLD-VGL---SYIKLGQPATTLSGGEAQRVKLALELSRRST 888 FFS IPP E RR+K LL+ VGL +++++ S G QR+ +A L Sbjct: 110 FFSQLYGIPPREAKRRVKELLEIVGLEEWAHVRV----ENYSKGMKQRLHIARGLINDPE 165 Query: 889 GRTLYLLDEPTTGLHFADVKKLLDVLNRLVDMGNTVVLIEHNL-DVIKQADWIIDLGPEG 947 + LLDEPT GL +++ ++ R+V G TV+L H + + + +D + + Sbjct: 166 ---VLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVLLTTHYMVEAEELSDRVAIISK-- 220 Query: 948 GEKGGRIVVEGRPEDV 963 GRIV EG PED+ Sbjct: 221 ----GRIVAEGPPEDL 232 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 45.4 bits (106), Expect = 6e-06 Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 10/103 (9%) Query: 521 LERRASTLSGGEAQRIRLATQIGSSLVGVLYVLDEPTIGLHQRDNQRLIDTLKYL-RDLG 579 L +A LSGGE Q + +A + L +LDEP++GL + ++ T+K L R+ G Sbjct: 134 LGEKAGNLSGGEQQMLAIAMAL--LYRPKLLMLDEPSLGLAPKITSQIYATIKMLHREEG 191 Query: 580 NTLIVVEHD-EQTLRTADYIVDLGPGAGMHGGKVVAQGTVEEV 621 T+++ E + + L +DY G + G++V +G+ EE+ Sbjct: 192 LTILLAEQNARKALEISDY------GYVIENGRIVLEGSAEEL 228 Score = 43.5 bits (101), Expect = 2e-05 Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 34/170 (20%) Query: 811 NRETLEIRYRGKTIYDVLEMTVEEAYEFFSPIPPVERRLKTLLDVG---------LSYI- 860 NRE EI RG IY V E F + E + G LSY Sbjct: 76 NREPDEIARRG-VIY------VMEGRRIFKELTTEENLVSVAYAAGASRDDIRSVLSYFP 128 Query: 861 ----KLGQPATTLSGGEAQRVKLALELSRRSTGRTLYLLDEPTTGLH---FADVKKLLDV 913 +LG+ A LSGGE Q + +A+ L R L +LDEP+ GL + + + + Sbjct: 129 RLKERLGEKAGNLSGGEQQMLAIAMALLYRP---KLLMLDEPSLGLAPKITSQIYATIKM 185 Query: 914 LNRLVDMGNTVVLIEHNLDVIKQADWIIDLGPEGGEKGGRIVVEGRPEDV 963 L+R + G T++L E N ++A I D G + GRIV+EG E++ Sbjct: 186 LHR--EEGLTILLAEQN---ARKALEISDYGYV--IENGRIVLEGSAEEL 228 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 45.1 bits (105), Expect = 8e-06 Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 18/116 (15%) Query: 864 QPATTLSGGEAQRVKLALELSRRSTGRTLYLLDEPTTGLHFADVKKLLDVLNRL-VDMGN 922 Q A TLSGGE Q + +A L +R L ++DEP+ GL + ++ + +RL ++G Sbjct: 135 QLAGTLSGGEQQMLAIARALIQRP---ILLMMDEPSLGLAPKLARDVIYLASRLREELGV 191 Query: 923 TVVLIEHNLDV-IKQAD--WIIDLGPEGGEKGGRIVVEGRPEDVA---ACSASYTG 972 T++L+E N+ + +K AD ++++ GRIV+EG +++A A+Y G Sbjct: 192 TILLVEQNVGLSLKVADRGYVMET--------GRIVLEGASDELALDPRIKAAYLG 239 Score = 42.0 bits (97), Expect = 7e-05 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 10/103 (9%) Query: 525 ASTLSGGEAQRIRLATQIGSSLVGVLYVLDEPTIGLHQRDNQRLIDTLKYLR-DLGNTLI 583 A TLSGGE Q + +A + +L ++DEP++GL + + +I LR +LG T++ Sbjct: 137 AGTLSGGEQQMLAIARALIQR--PILLMMDEPSLGLAPKLARDVIYLASRLREELGVTIL 194 Query: 584 VVEHD-EQTLRTADYIVDLGPGAGMHGGKVVAQGTVEEVTAVP 625 +VE + +L+ AD G M G++V +G +E+ P Sbjct: 195 LVEQNVGLSLKVAD------RGYVMETGRIVLEGASDELALDP 231 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 44.3 bits (103), Expect = 1e-05 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 11/112 (9%) Query: 516 LEYLTL----ERRASTLSGGEAQRIRLATQIGSSLVGVLYVLDEPTIGLHQRDNQRLIDT 571 L+YL L RR +T SGG +++ +A + S VL+ LDEPT+GL + L Sbjct: 122 LDYLDLMEAAHRRVATYSGGMRRKLEIAMSLVHS-PKVLF-LDEPTLGLDVHSRRSL--- 176 Query: 572 LKYLRDLGNTLIVVEHDEQTLRTADYIVDLGPGAGMHGGKVVAQGTVEEVTA 623 +Y+ DL + + + + A+ + D A + G++VA+GT EE+ A Sbjct: 177 WRYIEDLKRSAVTILLTTHYMEEAEMLSD--RVAIIDRGRIVAEGTPEELKA 226 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 43.5 bits (101), Expect = 2e-05 Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 5/106 (4%) Query: 508 LSFMKNVGLEYLTLERRASTLSGGEAQRIRLATQIGSSLVGVLYVLDEPTIGLHQRDNQR 567 LS K +G+E L L+R + LSGG+ QR+ LA + + +LDEP L + Sbjct: 115 LSVAKLLGIEGL-LDRYPAQLSGGQQQRVALARALVKE--PEVLLLDEPLSNLDALLRIK 171 Query: 568 LIDTLKYL-RDLGNTLIVVEHDE-QTLRTADYIVDLGPGAGMHGGK 611 + LK L ++LG T I V HD+ + L AD I + G GK Sbjct: 172 IRSELKKLQKELGITAIYVTHDQSEALAMADRIAIIASGVIQQVGK 217 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 43.5 bits (101), Expect = 2e-05 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 13/97 (13%) Query: 508 LSFMKNVGLEYLTLERRASTLSGGEAQRIRLATQIGSSLVGVLYVLDEPTIGLHQRDNQR 567 L +K + L+ L LERR TLSGGE Q++ +A + +Y+LDEP+ L D + Sbjct: 460 LELVKRMRLDKL-LERRVRTLSGGELQKVAVAAALARE--ADVYLLDEPSAYL---DVEE 513 Query: 568 LIDTLKYLRDLGNT----LIVVEHDEQTLRTADYIVD 600 + + +R + T +VVEHD L DY+ D Sbjct: 514 RVGVARAIRRIVETREAAALVVEHD---LMILDYVSD 547 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 43.5 bits (101), Expect = 2e-05 Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 19/157 (12%) Query: 473 MSVEEALDFFVTLRER-ISETEYQIARLILKEITSRLSFMKNVGLEYLTLERRASTLSGG 531 MSV + + F + LR + + T+ I R +++ K + +E L L+R+ LSGG Sbjct: 90 MSVFDNIAFTLHLRRKEMGLTKDDIRRRVIE-------VAKLLRIEDL-LDRKPGQLSGG 141 Query: 532 EAQRIRLATQIGSSLVGVLYVLDEPTIGLHQRDNQRLIDTLKYL-RDLGNTLIVVEHDE- 589 + QR+ LA + ++++DEP L + LK L +DL T + V HD+ Sbjct: 142 QQQRVALARALVRR--PKVWLMDEPLSNLDALLRLAMRAELKKLQKDLKITTVYVTHDQA 199 Query: 590 QTLRTADYIVDLGPGAGMHGGKVVAQGTVEEVTAVPE 626 + + AD I A M+ G+VV GT EEV P+ Sbjct: 200 EAMSMADRI------AVMNKGRVVQVGTPEEVYMRPK 230 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 42.0 bits (97), Expect = 7e-05 Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 16/153 (10%) Query: 479 LDFFVTLRERISETEYQIARLILKEITSRLSFMKNVGLEYLTLER-RAST----LSGGEA 533 LD + T+ +I+E+ + L S M LE + + R RAS LSGG+ Sbjct: 102 LDPYRTVGSQIAESLLEHG---LASSGSEAESMAGDALELVGIPRDRASVYPHQLSGGQR 158 Query: 534 QRIRLATQIGSSLVGVLYVLDEPTIGLHQRDNQRLIDTLKYLR-DLGNTLIVVEHDEQTL 592 QR+ +A + +L + + DEPT L +++D +K L+ + G T+++V HD Sbjct: 159 QRVAIAAAV--ALEPKILIADEPTTALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGL- 215 Query: 593 RTADYIVDLGPGAGMHGGKVVAQGTVEEVTAVP 625 A+Y + A M+ G++V G E+V + P Sbjct: 216 -AAEYSDRI---AVMYAGELVEIGPAEDVVSNP 244 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 42.0 bits (97), Expect = 7e-05 Identities = 41/124 (33%), Positives = 54/124 (43%), Gaps = 14/124 (11%) Query: 515 GLEYLTLERRASTLSGGEAQRIRLATQIGSSLVGVLYVLDEPTIGLHQRDNQRLIDTLKY 574 GL L RRA S G +R+ L + S L VLDEPT G+ + R+ L+ Sbjct: 134 GLSREDLARRAGGYSKGMKRRLLLGITLMSK--PRLVVLDEPTSGVDPIASNRIKKILRG 191 Query: 575 LRDLGNTLIVVEHDEQTLRTADYIVDLGPGAGMHGGKVVAQGTVEEVTAVPESLTGQYLA 634 L G ++V HD L A+ I D +HGG VA G P L +Y Sbjct: 192 LSREGRAILVTTHD---LALAEEIAD--RVTIIHGGSTVASGP-------PYRLVEEYCG 239 Query: 635 GTLK 638 TL+ Sbjct: 240 ETLE 243 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 42.0 bits (97), Expect = 7e-05 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 9/139 (6%) Query: 511 MKNVGLEYLTLERRASTLSGGEAQRIRLATQIGSSLVGVLYVLDEPTIGLHQRDNQRLID 570 +++VGL +R LSGG+ QR+ +A + +L + + DEPT L ++++ Sbjct: 138 LESVGLHRSIADRYPHELSGGQKQRVVIAMAL--ALEPDIVIADEPTTALDVVVQAQILN 195 Query: 571 TLKYLR-DLGNTLIVVEHDEQTLRTADYIVDLGPGAGMHGGKVVAQGTVEEVTAVPE-SL 628 LK L + ++I++ HD + V + M+GGK+ G + V P+ Sbjct: 196 LLKKLAWEKNLSIILITHDLSVIAELAETVMI-----MYGGKIAEYGPSDAVFTKPQHPY 250 Query: 629 TGQYLAGTLKIEVPSSRRA 647 T L K+ P R A Sbjct: 251 TQALLKAIPKLRGPIDRLA 269 Score = 42.0 bits (97), Expect = 7e-05 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 24/142 (16%) Query: 816 EIRYRGKTIYDVLEMTVEEAYEFFSPIPPVERRLKTLLD--------------------V 855 E R K + + M + A +P+ V R+++ +L V Sbjct: 82 EAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELLESV 141 Query: 856 GLSYIKLGQPATTLSGGEAQRVKLALELSRRSTGRTLYLLDEPTTGLHFADVKKLLDVLN 915 GL + LSGG+ QRV +A+ L+ + + DEPTT L ++L++L Sbjct: 142 GLHRSIADRYPHELSGGQKQRVVIAMALALEP---DIVIADEPTTALDVVVQAQILNLLK 198 Query: 916 RLV-DMGNTVVLIEHNLDVIKQ 936 +L + +++LI H+L VI + Sbjct: 199 KLAWEKNLSIILITHDLSVIAE 220 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 42.0 bits (97), Expect = 7e-05 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 869 LSGGEAQRVKLALELSRRSTGRTLYLLDEPTTGLHFADVKKLLDVLNRLV-DMGNTVVLI 927 LSGG QR + + LS R L + DEPTT L +++D+L +L + G T++LI Sbjct: 166 LSGGMKQRGVIGISLSNRPK---LLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLI 222 Query: 928 EHNLDVIKQ 936 HNL ++ + Sbjct: 223 THNLGLVAE 231 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,031,856 Number of Sequences: 1700 Number of extensions: 49711 Number of successful extensions: 316 Number of sequences better than 1.0e-04: 18 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 270 Number of HSP's gapped (non-prelim): 53 length of query: 981 length of database: 492,079 effective HSP length: 86 effective length of query: 895 effective length of database: 345,879 effective search space: 309561705 effective search space used: 309561705 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718882|ref|YP_003874414.1| hypothetical protein STHERM_c12000 [Spirochaeta thermophila DSM 6192] (248 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 257,624 Number of Sequences: 1700 Number of extensions: 10641 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 248 length of database: 492,079 effective HSP length: 75 effective length of query: 173 effective length of database: 364,579 effective search space: 63072167 effective search space used: 63072167 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718883|ref|YP_003874415.1| hypothetical protein STHERM_c12010 [Spirochaeta thermophila DSM 6192] (305 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 284,795 Number of Sequences: 1700 Number of extensions: 11764 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 305 length of database: 492,079 effective HSP length: 76 effective length of query: 229 effective length of database: 362,879 effective search space: 83099291 effective search space used: 83099291 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718884|ref|YP_003874416.1| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Spirochaeta thermophila DSM 6192] (366 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 372,988 Number of Sequences: 1700 Number of extensions: 16534 Number of successful extensions: 74 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74 Number of HSP's gapped (non-prelim): 0 length of query: 366 length of database: 492,079 effective HSP length: 78 effective length of query: 288 effective length of database: 359,479 effective search space: 103529952 effective search space used: 103529952 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718885|ref|YP_003874417.1| hypothetical protein STHERM_c12030 [Spirochaeta thermophila DSM 6192] (143 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.140 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,580 Number of Sequences: 1700 Number of extensions: 1679 Number of successful extensions: 5 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 143 length of database: 492,079 effective HSP length: 69 effective length of query: 74 effective length of database: 374,779 effective search space: 27733646 effective search space used: 27733646 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718886|ref|YP_003874418.1| hypothetical protein STHERM_c12040 [Spirochaeta thermophila DSM 6192] (634 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 566,026 Number of Sequences: 1700 Number of extensions: 23324 Number of successful extensions: 70 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 0 length of query: 634 length of database: 492,079 effective HSP length: 83 effective length of query: 551 effective length of database: 350,979 effective search space: 193389429 effective search space used: 193389429 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718887|ref|YP_003874419.1| V-type ATPase subunit D [Spirochaeta thermophila DSM 6192] (198 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431024|ref|NP_147203.2| V-type ATP synthase subunit D [Aer... 44 4e-06 >gi|118431024|ref|NP_147203.2| V-type ATP synthase subunit D [Aeropyrum pernix K1] Length = 211 Score = 43.5 bits (101), Expect = 4e-06 Identities = 25/79 (31%), Positives = 45/79 (56%) Query: 119 AVLFLRELLAVEAEIMVLEEQKRRLSEELRITSQRVNLFEKVKIPETRDHIRRITIYLGD 178 ++L +R +L ++ EE +RL EL+ T + +N + V +P ++ I+ I + L D Sbjct: 131 SILDMRSILDKLLKLAEYEETLQRLISELKDTQRLINALDYVILPSYQNAIKFIKLVLED 190 Query: 179 QQTAAVVRGKIAKKKLEAR 197 + VR KI K+K+EA+ Sbjct: 191 RMREDFVRLKIIKRKMEAK 209 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 179,496 Number of Sequences: 1700 Number of extensions: 7460 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 1 length of query: 198 length of database: 492,079 effective HSP length: 72 effective length of query: 126 effective length of database: 369,679 effective search space: 46579554 effective search space used: 46579554 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718888|ref|YP_003874420.1| V-type ATP synthase subunit B [Spirochaeta thermophila DSM 6192] (444 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431025|ref|NP_147204.2| V-type ATP synthase subunit B [Aer... 300 5e-83 gi|118431026|ref|NP_147205.2| V-type ATP synthase subunit A [Aer... 74 7e-15 >gi|118431025|ref|NP_147204.2| V-type ATP synthase subunit B [Aeropyrum pernix K1] Length = 463 Score = 300 bits (768), Expect = 5e-83 Identities = 181/455 (39%), Positives = 262/455 (57%), Gaps = 32/455 (7%) Query: 5 YSRIESIAGNVITVRAQG-VRYGHLAEVVSRQG-KTLAEVIRLDGDLVALQVYGGTRGIS 62 Y I I G ++ V V Y + EV + G K V+ + +QV+ GT GIS Sbjct: 8 YRNISEIKGPLLVVEGVSRVAYDEIVEVETAAGEKRRGRVLEVGMGYAVVQVFEGTTGIS 67 Query: 63 -TGDEVRFLGHPMQVSFSDNLLGRIFDGSGRPRDNGPDL-VDELIEIGGPSVNPAKRIIP 120 TG VRF+G P+++ ++++LGRI +G G P D GP + DE ++ G +NPA+R P Sbjct: 68 PTGTVVRFMGRPLEIPVTEDMLGRIMNGLGEPIDGGPKIDADERRDVNGAPLNPAERAYP 127 Query: 121 RNMIRTGIPMIDVFNTLVESQKLPIFSVSGEPYNQLLARIALQA------EADVIILGGI 174 + I+TG+ ID NTLV QKLPIFS +G P+N+L A+IA QA E ++ I Sbjct: 128 EDFIQTGVSAIDGMNTLVRGQKLPIFSGAGLPHNRLAAQIARQATVRGEEEEFAVVFSAI 187 Query: 175 GLKYDDYLFFRNTLEEGGALSRTIFFVHTASDPVVEALLVPDISLAVAERFAL-KGRRVL 233 G+KYDD+LFF+ EE GAL R FV+ A +P + L+ P +L +AE A + VL Sbjct: 188 GIKYDDFLFFKKFFEETGALGRVAMFVNLADEPAMIRLITPRAALTLAEYLAYERDMHVL 247 Query: 234 VLLTDMTNFADALKEIAITMEQVPSNRGYPGDLYSQLAARYEKAVDFEG-AGSITILAVT 292 V++TDMTN+A+AL+EI+ E+VP +GYPG LYS LA+ YE+A +G GSIT + + Sbjct: 248 VIITDMTNYAEALREISAAREEVPGRQGYPGYLYSDLASIYERAGRVKGKKGSITQMPIL 307 Query: 293 TMPGDDVTHPIPDNTGYITEGQFYL-----RNGRIEPFGSLSRLKQLVNK-----NTRED 342 TMP DD+THPIPD TGYITEGQ L G P L L +L+ + TRED Sbjct: 308 TMPNDDITHPIPDLTGYITEGQIVLSRELHNRGIYPPINVLMSLSRLMKEGIGPGKTRED 367 Query: 343 HRAIMDGMIKLYAAYKETLEKKAMGF-----RMSEWDNKLLTYGQLFERELMDLS--VNI 395 H + + +LYA+Y +E +++ +SE D + L + LFE+ + N Sbjct: 368 HAEVSN---QLYASYSRGVELRSLTAVVGEESLSERDRRYLKFADLFEQRFLKQGERENR 424 Query: 396 PLEKALDKGWQILAECFTPEETGLRSDLIRRFWPK 430 +E+ LD W+IL+ E ++ + I+++ PK Sbjct: 425 SIEETLDIAWEILSVLPEEELVNIKEETIKKYHPK 459 >gi|118431026|ref|NP_147205.2| V-type ATP synthase subunit A [Aeropyrum pernix K1] Length = 597 Score = 73.9 bits (180), Expect = 7e-15 Identities = 52/205 (25%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 116 KRIIPRNMIRTGIPMIDVFNTLVESQKLPIFSVSGEPYNQLLARIALQAEADVIILGGIG 175 +++ P+ + TG+ +ID F + + + G L +A +EA V+I G G Sbjct: 210 EKLEPQLPLITGVRIIDTFFPMAKGGTGAVPGGFGTGKTVTLHSLAQWSEARVVIYIGCG 269 Query: 176 LKYDD-------YLFFRNTLEEGGALSRTIFFVHTASDPVVEALLVPDISLAVAERFALK 228 + ++ + +++ + RT+ +T++ PV + + +AE + Sbjct: 270 ERGNEMTEVLERFPQYKDPWTGKPLMDRTVLIANTSNMPVAAREASIYVGITIAEYYRDM 329 Query: 229 GRRVLVLLTDMTNFADALKEIAITMEQVPSNRGYPGDLYSQLAARYEKAVDF------EG 282 G VL++ + +A+AL+EIA +E++P+ GYP L S+LA YE+A E Sbjct: 330 GYDVLLVADSTSRWAEALREIAGRLEEMPAEEGYPSYLASRLAEFYERAGRVKALGSPER 389 Query: 283 AGSITILAVTTMPGDDVTHPIPDNT 307 +GS+T++ + PG D + P+ +T Sbjct: 390 SGSVTVVGAVSPPGGDFSEPVTSHT 414 Score = 49.3 bits (116), Expect = 2e-07 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 4/91 (4%) Query: 18 VRAQGVRYGHLAEVVS-RQGKTLAEVIRLDGDLVALQVYGGTRGISTGDEVRFLGHPMQV 76 V A+G+ + E+V + + + E+ R+ GD +QVY T G+ G+ V G P+ V Sbjct: 15 VVAEGMSGAQMYEMVYVGEDRLIGEITRIRGDRAFIQVYESTSGLKPGEPVVGTGAPLSV 74 Query: 77 SFSDNLLGRIFDGSGRPRDNGPDLVDELIEI 107 LLG I+DG RP P + +++ E+ Sbjct: 75 ELGPGLLGTIYDGVQRPL---PIIAEKVAEV 102 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 464,284 Number of Sequences: 1700 Number of extensions: 21811 Number of successful extensions: 76 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 4 length of query: 444 length of database: 492,079 effective HSP length: 80 effective length of query: 364 effective length of database: 356,079 effective search space: 129612756 effective search space used: 129612756 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718889|ref|YP_003874421.1| V-type ATP synthase subunit A [Spirochaeta thermophila DSM 6192] (591 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431026|ref|NP_147205.2| V-type ATP synthase subunit A [Aer... 382 e-107 gi|118431025|ref|NP_147204.2| V-type ATP synthase subunit B [Aer... 90 2e-19 >gi|118431026|ref|NP_147205.2| V-type ATP synthase subunit A [Aeropyrum pernix K1] Length = 597 Score = 382 bits (981), Expect = e-107 Identities = 220/520 (42%), Positives = 314/520 (60%), Gaps = 28/520 (5%) Query: 23 RMNEVAYVCVEDKKLKSEVIRIRGKHAELQVFEITRGIGVGDLVEFTGELLSVKLGPGLL 82 +M E+ YV + +L E+ RIRG A +QV+E T G+ G+ V TG LSV+LGPGLL Sbjct: 24 QMYEMVYV--GEDRLIGEITRIRGDRAFIQVYESTSGLKPGEPVVGTGAPLSVELGPGLL 81 Query: 83 AQIYDGLQNPLPELARKCG-------FFLERGVYVDPLDPEKRWAFTPVA-KPXXXXXXX 134 IYDG+Q PLP +A K F+ERG+ PL ++++ F P K Sbjct: 82 GTIYDGVQRPLPIIAEKVAEVDPRRRMFVERGIQAPPLPRDRKFHFKPEPLKEGDKVEGG 141 Query: 135 XXXXXXPE-GIFQHRIMVPFNMREQYTVRRVVPAGDYTVNDVVAEVEDPQGEVYPLTMSF 193 PE + +H +MVP +R + ++ + GDY+V D +A VE G + M Sbjct: 142 DALGRVPETSLIEHVVMVPPGIRGR--LKWLASEGDYSVEDTIAVVER-DGRDVEIRMHQ 198 Query: 194 YWPVKVPITAYAERLQPTEPMVTKIRIIDTFFPVARGGTYCIPGPFGAGKTVLQQITSRN 253 WPV++P + E+L+P P++T +RIIDTFFP+A+GGT +PG FG GKTV ++ Sbjct: 199 RWPVRIP-RPFKEKLEPQLPLITGVRIIDTFFPMAKGGTGAVPGGFGTGKTVTLHSLAQW 257 Query: 254 AEVDIVIIAACGERAGEVVETLREFPELIDPRTGRTLMERTVIVCNTSSMPVAAREASVY 313 +E +VI CGER E+ E L FP+ DP TG+ LM+RTV++ NTS+MPVAAREAS+Y Sbjct: 258 SEARVVIYIGCGERGNEMTEVLERFPQYKDPWTGKPLMDRTVLIANTSNMPVAAREASIY 317 Query: 314 TAVTLAEYYRQMGLDCLLLADSTSRWAQAMREMSGRLEEIPGEEAFPAYLESVIASFYER 373 +T+AEYYR MG D LL+ADSTSRWA+A+RE++GRLEE+P EE +P+YL S +A FYER Sbjct: 318 VGITIAEYYRDMGYDVLLVADSTSRWAEALREIAGRLEEMPAEEGYPSYLASRLAEFYER 377 Query: 374 AGVVRL--KDGSLGSVTIGGTVSPAGGNFEEPVTQATLKVVGAFHGLSRERSDARKYPAI 431 AG V+ GSVT+ G VSP GG+F EPVT T + + F L + + +R YPAI Sbjct: 378 AGRVKALGSPERSGSVTVVGAVSPPGGDFSEPVTSHTTRFIRVFWALDTKLAYSRHYPAI 437 Query: 432 HPLESWSKYRGV--------TDPAKTEY---ARKVLFDGNEVAQMMKVVGEEGTTLEDFV 480 + L S+S Y + D EY A +L +E+ +++++VG EG +D + Sbjct: 438 NWLMSYSAYVDLVTQWWHENVDKRWREYRDEAMDILLRESELQEIVRLVGTEGLDEKDKM 497 Query: 481 TYLKAEFLDNVYLQQDAFDPVDAAVGVERQRHTFDIVFDI 520 A + + +L+Q+AFDP+DA ++Q ++ DI Sbjct: 498 VLETARLIKDGFLKQNAFDPIDAFATPQKQFRLLKMIMDI 537 >gi|118431025|ref|NP_147204.2| V-type ATP synthase subunit B [Aeropyrum pernix K1] Length = 463 Score = 89.7 bits (221), Expect = 2e-19 Identities = 98/343 (28%), Positives = 154/343 (44%), Gaps = 47/343 (13%) Query: 205 AERLQPTEPMVTKIRIIDTFFPVARGGTYCIPGPFGAG-------KTVLQQITSRNAEVD 257 AER P + + T + ID + RG +P GAG + +Q T R E + Sbjct: 122 AERAYPEDFIQTGVSAIDGMNTLVRGQK--LPIFSGAGLPHNRLAAQIARQATVRGEEEE 179 Query: 258 I-VIIAACGERAGEVVETLREFPELIDPRTGRTLMERTVIVCNTSSMPVAAREASVYTAV 316 V+ +A G + + + + F E TG + R + N + P R + A+ Sbjct: 180 FAVVFSAIGIKYDDFLFFKKFFEE-----TGA--LGRVAMFVNLADEPAMIRLITPRAAL 232 Query: 317 TLAEYYR-QMGLDCLLLADSTSRWAQAMREMSGRLEEIPGEEAFPAYLESVIASFYERAG 375 TLAEY + + L++ + +A+A+RE+S EE+PG + +P YL S +AS YERAG Sbjct: 233 TLAEYLAYERDMHVLVIITDMTNYAEALREISAAREEVPGRQGYPGYLYSDLASIYERAG 292 Query: 376 VVRLKDGSLGSVTIGGTVSPAGGNFEEPVTQATLKVVGAFHGLSRERSDARKYPAIHPLE 435 V+ K GS+ + I ++ + P+ T + LSRE + YP I+ L Sbjct: 293 RVKGKKGSITQMPI---LTMPNDDITHPIPDLTGYITEGQIVLSRELHNRGIYPPINVLM 349 Query: 436 SWSKYR------GVTDPAKTEYARKVLFD---GNEVAQMMKVVGEEGTTLEDFVTYLK-A 485 S S+ G T E + ++ G E+ + VVGEE + D YLK A Sbjct: 350 SLSRLMKEGIGPGKTREDHAEVSNQLYASYSRGVELRSLTAVVGEESLSERD-RRYLKFA 408 Query: 486 EFLDNVYLQQDAFDPVDAAVGVERQ----RHTFDIVFDILSAL 524 + + +L+Q ER+ T DI ++ILS L Sbjct: 409 DLFEQRFLKQG-----------ERENRSIEETLDIAWEILSVL 440 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 594,947 Number of Sequences: 1700 Number of extensions: 27671 Number of successful extensions: 122 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112 Number of HSP's gapped (non-prelim): 3 length of query: 591 length of database: 492,079 effective HSP length: 82 effective length of query: 509 effective length of database: 352,679 effective search space: 179513611 effective search space used: 179513611 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718890|ref|YP_003874422.1| hypothetical protein STHERM_c12080 [Spirochaeta thermophila DSM 6192] (190 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 182,402 Number of Sequences: 1700 Number of extensions: 7156 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 190 length of database: 492,079 effective HSP length: 72 effective length of query: 118 effective length of database: 369,679 effective search space: 43622122 effective search space used: 43622122 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718891|ref|YP_003874423.1| V-type ATPase subunit E [Spirochaeta thermophila DSM 6192] (202 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.130 0.334 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 175,413 Number of Sequences: 1700 Number of extensions: 7151 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 202 length of database: 492,079 effective HSP length: 73 effective length of query: 129 effective length of database: 367,979 effective search space: 47469291 effective search space used: 47469291 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718892|ref|YP_003874424.1| adenylate/guanylate cyclase [Spirochaeta thermophila DSM 6192] (479 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 437,739 Number of Sequences: 1700 Number of extensions: 18600 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 479 length of database: 492,079 effective HSP length: 80 effective length of query: 399 effective length of database: 356,079 effective search space: 142075521 effective search space used: 142075521 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718893|ref|YP_003874425.1| hypothetical protein STHERM_c12110 [Spirochaeta thermophila DSM 6192] (173 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.138 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 220,315 Number of Sequences: 1700 Number of extensions: 10761 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 173 length of database: 492,079 effective HSP length: 71 effective length of query: 102 effective length of database: 371,379 effective search space: 37880658 effective search space used: 37880658 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718894|ref|YP_003874426.1| hypothetical protein STHERM_c12120 [Spirochaeta thermophila DSM 6192] (244 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.145 0.493 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 191,857 Number of Sequences: 1700 Number of extensions: 6481 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 244 length of database: 492,079 effective HSP length: 74 effective length of query: 170 effective length of database: 366,279 effective search space: 62267430 effective search space used: 62267430 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718895|ref|YP_003874427.1| hypothetical protein STHERM_c12130 [Spirochaeta thermophila DSM 6192] (254 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.145 0.500 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,079 Number of Sequences: 1700 Number of extensions: 2277 Number of successful extensions: 3 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 254 length of database: 492,079 effective HSP length: 75 effective length of query: 179 effective length of database: 364,579 effective search space: 65259641 effective search space used: 65259641 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718896|ref|YP_003874428.1| hypothetical protein STHERM_c12140 [Spirochaeta thermophila DSM 6192] (355 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.138 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 318,724 Number of Sequences: 1700 Number of extensions: 13612 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 0 length of query: 355 length of database: 492,079 effective HSP length: 78 effective length of query: 277 effective length of database: 359,479 effective search space: 99575683 effective search space used: 99575683 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718897|ref|YP_003874429.1| hypothetical protein STHERM_c12150 [Spirochaeta thermophila DSM 6192] (58 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.143 0.482 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,883 Number of Sequences: 1700 Number of extensions: 2025 Number of successful extensions: 1 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 58 length of database: 492,079 effective HSP length: 30 effective length of query: 28 effective length of database: 441,079 effective search space: 12350212 effective search space used: 12350212 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718898|ref|YP_003874430.1| hypothetical protein STHERM_c12160 [Spirochaeta thermophila DSM 6192] (164 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.332 0.147 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 166,826 Number of Sequences: 1700 Number of extensions: 6409 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 164 length of database: 492,079 effective HSP length: 70 effective length of query: 94 effective length of database: 373,079 effective search space: 35069426 effective search space used: 35069426 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718899|ref|YP_003874431.1| short-chain dehydrogenase/reductase [Spirochaeta thermophila DSM 6192] (279 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum... 55 3e-09 gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] 50 8e-08 >gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum pernix K1] Length = 250 Score = 54.7 bits (130), Expect = 3e-09 Identities = 64/227 (28%), Positives = 99/227 (43%), Gaps = 23/227 (10%) Query: 35 AAVKGGASGIGKALCEMLLSFGAK--AVTLADINEENLIKETAR-LQTLYPGKVFGIVTD 91 A V GG+ GIG+A +L F + +V +A + +L ++TA + L + + + D Sbjct: 6 ALVTGGSRGIGRAT---VLRFAREGWSVVIAYKSRADLAEKTAEEARRLGSPEAYTVRVD 62 Query: 92 VTNQASVVNMVKAARENGEGRLDYLFNNDGLGLTKPFDACSAEDWKYAFDVNFFGVLYGT 151 V + SV M E L+ L N G+ + S +W+ VN GV T Sbjct: 63 VGDPDSVTEMSSRVGELIP-HLNVLVNAAGVLQLGGIEETSISEWEETLRVNLTGVYLVT 121 Query: 152 IAAVDIMNDQDGGGSIVNTASDIAFVPMAYQRM-YSATKAAVLGMTVALRYELSDRNIRL 210 + ++ SIVN AS + YSA+KA V+G+T L +L+ IR+ Sbjct: 122 KLLLPLLRKAKWA-SIVNVASIAGETGNVVAGVAYSASKAGVIGLTKRLAVQLAGYGIRV 180 Query: 211 FAVAPGTVATPIFRG--------------NPPSDAIMPDVAAERILY 243 AVAP V T + R +P + P+ AE IL+ Sbjct: 181 NAVAPSFVETDMTRSFLDTPEKRERIASLHPLKIILKPEDVAEAILF 227 >gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] Length = 260 Score = 49.7 bits (117), Expect = 8e-08 Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 5/216 (2%) Query: 32 GKTAAVKGGASGIGKALCEMLLSFGAKAVTLADINEENLIKETARLQTLYPGKVFGIVT- 90 GK A V G+SG+G A L GA+ + L N E L +R+ +L G IV Sbjct: 7 GKLAVVTAGSSGLGFASALELARNGAR-LLLFSRNREKLEAAASRIASLVSGAQVDIVAG 65 Query: 91 DVTNQASVVNMVKAARENGEGRLDYLFNNDGLGLTKPFDACSAEDWKYAFDVNFFGVLYG 150 D+ + + + AR+ G D L + G F EDW ++ + ++ Sbjct: 66 DIREPGDIDRLFEKARDLGGA--DILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWV 123 Query: 151 TIAAVDIMNDQDGGGSIVNTASDIAFVPMAYQRMYSATKAAVLGMTVALRYELSDRNIRL 210 A + M ++ G G +V S P + + + V+G+ L EL+ + + Sbjct: 124 GRRAAEQMVEK-GWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHGVTV 182 Query: 211 FAVAPGTVATPIFRGNPPSDAIMPDVAAERILYSVA 246 AV P + T R A + E L S+A Sbjct: 183 NAVLPSLILTDRVRSLAEERARRSGITVEEALKSMA 218 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 260,718 Number of Sequences: 1700 Number of extensions: 10548 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 2 length of query: 279 length of database: 492,079 effective HSP length: 76 effective length of query: 203 effective length of database: 362,879 effective search space: 73664437 effective search space used: 73664437 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718900|ref|YP_003874432.1| hypothetical protein STHERM_c12180 [Spirochaeta thermophila DSM 6192] (82 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.338 0.146 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,078 Number of Sequences: 1700 Number of extensions: 1881 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 82 length of database: 492,079 effective HSP length: 52 effective length of query: 30 effective length of database: 403,679 effective search space: 12110370 effective search space used: 12110370 T: 11 A: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718901|ref|YP_003874433.1| hypothetical protein STHERM_c12190 [Spirochaeta thermophila DSM 6192] (163 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.478 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 191,721 Number of Sequences: 1700 Number of extensions: 8595 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 163 length of database: 492,079 effective HSP length: 70 effective length of query: 93 effective length of database: 373,079 effective search space: 34696347 effective search space used: 34696347 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718902|ref|YP_003874434.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Spirochaeta thermophila DSM 6192] (310 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 293,391 Number of Sequences: 1700 Number of extensions: 12549 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 310 length of database: 492,079 effective HSP length: 77 effective length of query: 233 effective length of database: 361,179 effective search space: 84154707 effective search space used: 84154707 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718903|ref|YP_003874435.1| hypothetical protein STHERM_c12210 [Spirochaeta thermophila DSM 6192] (66 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.133 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,803 Number of Sequences: 1700 Number of extensions: 1243 Number of successful extensions: 1 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 66 length of database: 492,079 effective HSP length: 37 effective length of query: 29 effective length of database: 429,179 effective search space: 12446191 effective search space used: 12446191 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718904|ref|YP_003874436.1| hypothetical protein STHERM_c12220 [Spirochaeta thermophila DSM 6192] (135 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 125,730 Number of Sequences: 1700 Number of extensions: 4642 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 135 length of database: 492,079 effective HSP length: 68 effective length of query: 67 effective length of database: 376,479 effective search space: 25224093 effective search space used: 25224093 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718905|ref|YP_003874437.1| cytidylate kinase [Spirochaeta thermophila DSM 6192] (174 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431285|ref|NP_147642.2| cytidylate kinase [Aeropyrum perni... 82 8e-18 >gi|118431285|ref|NP_147642.2| cytidylate kinase [Aeropyrum pernix K1] Length = 172 Score = 82.0 bits (201), Expect = 8e-18 Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 6/172 (3%) Query: 5 ISGKSGCGNSTVSRMVAERLGLRWINY--TFRNIAQERGVPFEQILKEAQESPKWDLYLD 62 ISG G G ST ++ +AE LGL + + FR+IA+ERG+ ++ + A+E P+ DL +D Sbjct: 2 ISGPPGSGKSTYAKRLAEDLGLSYYSTGTIFRSIARERGLSLAEMSRLAEEDPRIDLEID 61 Query: 63 ERQKTFLEEGDCVLGSRLAIWLAPPPA-FKVYLFAPLDVRARRIRKREGGTFEEVLEKTK 121 R G V+ S LA WL A + V + AP+ VR RRI +R+G L +T Sbjct: 62 RRTLDVASRGGVVIDSHLAAWLLRDKAQYLVLVKAPVWVRVRRIARRDGVPLRRALAETV 121 Query: 122 XXXXXXXXXXXXLYGIDIDRYEEVADLVIDTTELTPEEITERIVGAVSARKR 173 YGID+ + L +DT+ + E+ T R++ AR+R Sbjct: 122 EREWSQRLRFKRYYGIDVSD-TTIFHLTVDTSMYSVED-TYRLI-LEGARRR 170 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 174,782 Number of Sequences: 1700 Number of extensions: 7225 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 1 length of query: 174 length of database: 492,079 effective HSP length: 71 effective length of query: 103 effective length of database: 371,379 effective search space: 38252037 effective search space used: 38252037 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718906|ref|YP_003874438.1| protein YicC [Spirochaeta thermophila DSM 6192] (288 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 265,489 Number of Sequences: 1700 Number of extensions: 11253 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 288 length of database: 492,079 effective HSP length: 76 effective length of query: 212 effective length of database: 362,879 effective search space: 76930348 effective search space used: 76930348 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718907|ref|YP_003874439.1| UDP-N-acetylmuramate--L-alanine ligase [Spirochaeta thermophila DSM 6192] (489 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.138 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 512,179 Number of Sequences: 1700 Number of extensions: 22811 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 0 length of query: 489 length of database: 492,079 effective HSP length: 80 effective length of query: 409 effective length of database: 356,079 effective search space: 145636311 effective search space used: 145636311 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718908|ref|YP_003874440.1| hypothetical protein STHERM_c12260 [Spirochaeta thermophila DSM 6192] (204 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 187,533 Number of Sequences: 1700 Number of extensions: 7332 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 204 length of database: 492,079 effective HSP length: 73 effective length of query: 131 effective length of database: 367,979 effective search space: 48205249 effective search space used: 48205249 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718909|ref|YP_003874441.1| hypothetical protein STHERM_c12270 [Spirochaeta thermophila DSM 6192] (405 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 402,863 Number of Sequences: 1700 Number of extensions: 17443 Number of successful extensions: 88 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88 Number of HSP's gapped (non-prelim): 0 length of query: 405 length of database: 492,079 effective HSP length: 79 effective length of query: 326 effective length of database: 357,779 effective search space: 116635954 effective search space used: 116635954 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718910|ref|YP_003874442.1| hypothetical protein STHERM_c12280 [Spirochaeta thermophila DSM 6192] (409 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.142 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 307,399 Number of Sequences: 1700 Number of extensions: 12699 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 0 length of query: 409 length of database: 492,079 effective HSP length: 79 effective length of query: 330 effective length of database: 357,779 effective search space: 118067070 effective search space used: 118067070 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718911|ref|YP_003874443.1| alkaline phosphatase [Spirochaeta thermophila DSM 6192] (486 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 489,608 Number of Sequences: 1700 Number of extensions: 21942 Number of successful extensions: 91 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91 Number of HSP's gapped (non-prelim): 0 length of query: 486 length of database: 492,079 effective HSP length: 80 effective length of query: 406 effective length of database: 356,079 effective search space: 144568074 effective search space used: 144568074 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718912|ref|YP_003874444.1| multitransmembrane protein-like protein [Spirochaeta thermophila DSM 6192] (405 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.141 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 318,677 Number of Sequences: 1700 Number of extensions: 12674 Number of successful extensions: 77 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77 Number of HSP's gapped (non-prelim): 0 length of query: 405 length of database: 492,079 effective HSP length: 79 effective length of query: 326 effective length of database: 357,779 effective search space: 116635954 effective search space used: 116635954 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718913|ref|YP_003874445.1| 3'-5' exonuclease [Spirochaeta thermophila DSM 6192] (346 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 242,019 Number of Sequences: 1700 Number of extensions: 8479 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 346 length of database: 492,079 effective HSP length: 78 effective length of query: 268 effective length of database: 359,479 effective search space: 96340372 effective search space used: 96340372 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718914|ref|YP_003874446.1| hypothetical protein STHERM_c12320 [Spirochaeta thermophila DSM 6192] (471 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.142 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 596,411 Number of Sequences: 1700 Number of extensions: 31985 Number of successful extensions: 101 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101 Number of HSP's gapped (non-prelim): 0 length of query: 471 length of database: 492,079 effective HSP length: 80 effective length of query: 391 effective length of database: 356,079 effective search space: 139226889 effective search space used: 139226889 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718915|ref|YP_003874447.1| hypothetical protein STHERM_c12330 [Spirochaeta thermophila DSM 6192] (527 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431940|ref|NP_148720.2| molybdopterin oxidoreductase, iron... 53 2e-08 gi|118431451|ref|NP_147932.2| NADH dehydrogenase subunit I [Aero... 44 7e-06 >gi|118431940|ref|NP_148720.2| molybdopterin oxidoreductase, iron-sulfur binding subunit [Aeropyrum pernix K1] Length = 233 Score = 52.8 bits (125), Expect = 2e-08 Identities = 40/144 (27%), Positives = 53/144 (36%), Gaps = 37/144 (25%) Query: 149 ACNACEGARFMVTEVCQGCVARPCK------TGCPRGAISIVRGRAS---IDYERCINCG 199 AC+ C R + + + VA T + A VRGR ID ++C C Sbjct: 8 ACSTCNTRREFLKKTAKAAVATSSLILLGSVTIKSQAASERVRGRRFAMFIDVDKCYGCY 67 Query: 200 LCERVCPFHAIVRIPV----------------------------PCEEVCPVGAIEKGED 231 C C V I V C +VCPV A ED Sbjct: 68 ACVVACAHENNVPIGVYRTWIERYVKEDGTPVYVPKQCNHCDNPSCVDVCPVKATYVNED 127 Query: 232 GVARIDRGACILCGKCLKACPFGA 255 G+ +D CI CG C++ CP+GA Sbjct: 128 GIVLVDDDLCIGCGACIQNCPYGA 151 >gi|118431451|ref|NP_147932.2| NADH dehydrogenase subunit I [Aeropyrum pernix K1] Length = 186 Score = 44.3 bits (103), Expect = 7e-06 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 185 RGRASIDYERCINCGLCERVCPFHA--IVRIPVPCEEVCPVGAIEKGEDGVARIDRGACI 242 RG ++ +CI+C C R+CP A ++R+PVP P +K I+ CI Sbjct: 56 RGFIILNKAKCISCAACARICPSAAMKMIRVPVP----HPKEPEKKVTKQFPVINYQRCI 111 Query: 243 LCGKCLKACP 252 CG C+ CP Sbjct: 112 FCGYCVDICP 121 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 460,143 Number of Sequences: 1700 Number of extensions: 18077 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 6 length of query: 527 length of database: 492,079 effective HSP length: 81 effective length of query: 446 effective length of database: 354,379 effective search space: 158053034 effective search space used: 158053034 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718916|ref|YP_003874448.1| hypothetical protein STHERM_c12340 [Spirochaeta thermophila DSM 6192] (91 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,348 Number of Sequences: 1700 Number of extensions: 3720 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 91 length of database: 492,079 effective HSP length: 60 effective length of query: 31 effective length of database: 390,079 effective search space: 12092449 effective search space used: 12092449 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718917|ref|YP_003874449.1| hypothetical protein STHERM_c12350 [Spirochaeta thermophila DSM 6192] (396 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 354,775 Number of Sequences: 1700 Number of extensions: 14328 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 0 length of query: 396 length of database: 492,079 effective HSP length: 79 effective length of query: 317 effective length of database: 357,779 effective search space: 113415943 effective search space used: 113415943 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718918|ref|YP_003874450.1| hypothetical protein STHERM_c12360 [Spirochaeta thermophila DSM 6192] (574 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 591,747 Number of Sequences: 1700 Number of extensions: 27301 Number of successful extensions: 109 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109 Number of HSP's gapped (non-prelim): 0 length of query: 574 length of database: 492,079 effective HSP length: 82 effective length of query: 492 effective length of database: 352,679 effective search space: 173518068 effective search space used: 173518068 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718919|ref|YP_003874451.1| hypothetical protein STHERM_c12370 [Spirochaeta thermophila DSM 6192] (84 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,812 Number of Sequences: 1700 Number of extensions: 3453 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 84 length of database: 492,079 effective HSP length: 54 effective length of query: 30 effective length of database: 400,279 effective search space: 12008370 effective search space used: 12008370 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718920|ref|YP_003874452.1| chaperone ClpB [Spirochaeta thermophila DSM 6192] (836 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601365|ref|NP_147901.1| cell division protein CDC48 [Aeropy... 43 4e-05 >gi|14601365|ref|NP_147901.1| cell division protein CDC48 [Aeropyrum pernix K1] Length = 726 Score = 42.7 bits (99), Expect = 4e-05 Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 27/158 (17%) Query: 221 VLIGDPGVGKTAIVEALAQRIVRGEVPEILEGKRILVLDLAALVAGTKYRGEFEERLKRV 280 +L G PG GKT + +ALA I G + G I+ +KY GE E+RL+ + Sbjct: 222 LLYGPPGTGKTLLAKALANEI--GAYFISINGPEIM----------SKYYGESEQRLREI 269 Query: 281 MREIVSVKNVVLFIDELHTXXXXXXXXXXXXXSNMLKPALS-------RGEIQCIGATTL 333 +E ++FIDE+ ++ L+ RG + IGAT Sbjct: 270 FKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKERGRVIVIGATNR 329 Query: 334 DEYRKYIEKDAALER--RF-QPVYVREPTIEETIQILE 368 + D AL R RF + + +R P +IL+ Sbjct: 330 PD-----AIDPALRRPGRFDREIEIRPPDKRARAEILK 362 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 773,066 Number of Sequences: 1700 Number of extensions: 34540 Number of successful extensions: 231 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 225 Number of HSP's gapped (non-prelim): 4 length of query: 836 length of database: 492,079 effective HSP length: 85 effective length of query: 751 effective length of database: 347,579 effective search space: 261031829 effective search space used: 261031829 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718921|ref|YP_003874453.1| hypothetical protein STHERM_c12390 [Spirochaeta thermophila DSM 6192] (352 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 346,665 Number of Sequences: 1700 Number of extensions: 13905 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 352 length of database: 492,079 effective HSP length: 78 effective length of query: 274 effective length of database: 359,479 effective search space: 98497246 effective search space used: 98497246 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718922|ref|YP_003874454.1| hypothetical protein STHERM_c12400 [Spirochaeta thermophila DSM 6192] (172 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.141 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 127,187 Number of Sequences: 1700 Number of extensions: 4426 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 172 length of database: 492,079 effective HSP length: 71 effective length of query: 101 effective length of database: 371,379 effective search space: 37509279 effective search space used: 37509279 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718923|ref|YP_003874455.1| lipoprotein releasing system transmembrane protein LolC/E family [Spirochaeta thermophila DSM 6192] (424 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 418,800 Number of Sequences: 1700 Number of extensions: 18534 Number of successful extensions: 80 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80 Number of HSP's gapped (non-prelim): 0 length of query: 424 length of database: 492,079 effective HSP length: 79 effective length of query: 345 effective length of database: 357,779 effective search space: 123433755 effective search space used: 123433755 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718924|ref|YP_003874456.1| lipoprotein-releasing system ATP-binding protein LolD [Spirochaeta thermophila DSM 6192] (226 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 177 3e-46 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 119 5e-29 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 117 2e-28 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 115 1e-27 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 112 1e-26 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 111 2e-26 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 108 1e-25 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 107 2e-25 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 107 3e-25 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 106 4e-25 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 106 4e-25 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 104 2e-24 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 103 4e-24 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 97 3e-22 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 97 3e-22 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 95 2e-21 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 91 2e-20 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 90 4e-20 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 90 4e-20 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 90 5e-20 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 89 1e-19 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 85 2e-18 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 84 3e-18 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 84 4e-18 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 83 5e-18 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 83 5e-18 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 81 2e-17 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 79 1e-16 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 78 2e-16 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 75 2e-15 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 74 3e-15 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 72 9e-15 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 71 2e-14 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 67 3e-13 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 67 5e-13 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 63 7e-12 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 62 9e-12 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 58 2e-10 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 57 3e-10 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 57 5e-10 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 50 6e-08 gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad5... 41 2e-05 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 177 bits (448), Expect = 3e-46 Identities = 98/221 (44%), Positives = 135/221 (61%), Gaps = 3/221 (1%) Query: 3 DPIIVLEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPT 62 D +V+E VVK Y S + L VS RG+V IMG SGSGK+TLL++I G+D P Sbjct: 8 DLAVVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPN 67 Query: 63 SGRVLLEGQDMGALDEEGLAAFRQRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSEA 122 +GRV+++G ++ + E L FR +G+VFQ H L+ T+LEN+LLP +AG Sbjct: 68 AGRVIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIPTLTALENILLPMALAG---KAN 124 Query: 123 AAKARDLLVRVGLGDRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSR 182 + ++LL RVGLG + YP +LSGGE+QR+A+A AL N P I++ADEPTG LD T Sbjct: 125 RLRGQELLRRVGLGGKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGE 184 Query: 183 MVEDVFFSLVREEGATLILVTHDAALASRADTVYRLEGGRL 223 + + G T++L THD +A AD V +E GRL Sbjct: 185 RIVRILLEEAHSRGKTVVLTTHDPRVARMADRVAVIEDGRL 225 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 119 bits (299), Expect = 5e-29 Identities = 90/229 (39%), Positives = 124/229 (54%), Gaps = 10/229 (4%) Query: 5 IIVLEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTP--- 61 ++ ++++ Y + +R +DGVS +G+ I+GESGSGKSTL I L P Sbjct: 3 VLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGR 62 Query: 62 -TSGRVLLEGQDMGALDEEGLAAFRQRDMGFVFQ--MHYLLRECTSLENVLLPAYMAGL- 117 GR+L G D+ +L E L +R R++G VFQ YL T + GL Sbjct: 63 IVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLA 122 Query: 118 -SFSEAAAKARDLLVRVGLG-DRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGN 175 S SEA + A D L VG+ DR YP QLSGG+RQRVAIA A+ P+I++ADEPT Sbjct: 123 SSGSEAESMAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTA 182 Query: 176 LDERTSRMVEDVFFSLVREEGATLILVTHDAALASR-ADTVYRLEGGRL 223 LD + D+ L E G T++LVTHD LA+ +D + + G L Sbjct: 183 LDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGEL 231 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 117 bits (294), Expect = 2e-28 Identities = 84/207 (40%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 17 SGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDMGAL 76 SGE +VL GV G+ VIMG SGSGKSTLL I L P SG ++ G D+ L Sbjct: 15 SGE---KVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVFRGVDVTRL 71 Query: 77 DEEGLAAFRQRDMGFVFQMHYLLRECTSLENVLLPAYMA-GLSFSEAAAKARDLLVRVGL 135 L R R +G++ Q + L T L N+ P A GLS +A +A L +G+ Sbjct: 72 SGSQLRMVR-RKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAEERAVKYLSMLGI 130 Query: 136 GDRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVEDVFFSLVREE 195 D H +P++LSGG++QR A+ARAL P I+L DEPT LD + V + F V Sbjct: 131 EDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEALFR-VATL 189 Query: 196 GATLILVTHDAALASR-ADTVYRLEGG 221 G +I+VTH+A A + AD + +E G Sbjct: 190 GKAMIVVTHEADFAVKVADRMAFMEDG 216 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 115 bits (287), Expect = 1e-27 Identities = 84/242 (34%), Positives = 125/242 (51%), Gaps = 28/242 (11%) Query: 1 MSDPIIVLEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDT 60 M+ ++V+E++ + + ++ +DGVS RG+V I GESGSGKSTL I GL Sbjct: 1 MAQELLVVEDLKTYFYTLRGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVP 60 Query: 61 P----TSGRVLLEGQDMGALDEEGLAA-FRQRDMGFVFQMHYLLRECTSLENVLLPAYMA 115 P GR++++G D+ ++ E L R + + VFQ NVL P Y Sbjct: 61 PPGRIVGGRIMIDGMDVTSMSEAELRRKVRWKKVSMVFQ---------GAMNVLTPVYTV 111 Query: 116 GLSFSE------------AAAKARDLLVRVGLGDRM-HHYPSQLSGGERQRVAIARALVN 162 G E A + +LL VGL + YP +LSGG++QRV IA AL Sbjct: 112 GRQIEEVLQIHRGVGRHEARQRVYELLESVGLHRSIADRYPHELSGGQKQRVVIAMALAL 171 Query: 163 GPRIVLADEPTGNLDERTSRMVEDVFFSLVREEGATLILVTHD-AALASRADTVYRLEGG 221 P IV+ADEPT LD + ++ L E+ ++IL+THD + +A A+TV + GG Sbjct: 172 EPDIVIADEPTTALDVVVQAQILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIMYGG 231 Query: 222 RL 223 ++ Sbjct: 232 KI 233 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 112 bits (279), Expect = 1e-26 Identities = 72/185 (38%), Positives = 102/185 (55%), Gaps = 11/185 (5%) Query: 40 IMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDMGALDEEGLAAFRQRDMGFVFQMHYLL 99 I+G SGSGK+TLL+LI G+ P+ GR+ D+ L +R++G VFQ + L Sbjct: 34 ILGPSGSGKTTLLYLIAGIYKPSRGRIYFNDVDVTDLPPN------KRNIGLVFQNYALY 87 Query: 100 RECTSLENVLLPAYMAGLSFSEAAAKARDLLVR--VGLGDRMHHYPSQLSGGERQRVAIA 157 T EN+ P + +F E A K + L V +G+ + YP+QLSGG++QRVA+A Sbjct: 88 PHMTVYENIAFPLRLR--NFGEPAIKEKVLSVAKLLGIEGLLDRYPAQLSGGQQQRVALA 145 Query: 158 RALVNGPRIVLADEPTGNLDERTSRMVEDVFFSLVREEGATLILVTHDAALA-SRADTVY 216 RALV P ++L DEP NLD + L +E G T I VTHD + A + AD + Sbjct: 146 RALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQKELGITAIYVTHDQSEALAMADRIA 205 Query: 217 RLEGG 221 + G Sbjct: 206 IIASG 210 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 111 bits (277), Expect = 2e-26 Identities = 68/198 (34%), Positives = 103/198 (52%), Gaps = 10/198 (5%) Query: 8 LEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVL 67 LE +VK + G+T L G+ + G+ V++G SG GK+T L ++ GL+ P +GRV Sbjct: 6 LEGIVKRF--GKTV--ALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVY 61 Query: 68 LEGQDMGALDEEGLAAFRQRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSEAAAKAR 127 +G+D+ L + R++ VFQ + L +N+ P + L E + R Sbjct: 62 FDGRDVTGLPP------KDRNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVR 115 Query: 128 DLLVRVGLGDRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVEDV 187 + + + YP QLSGG++QRVA+ARA+V P ++L DEP NLD + Sbjct: 116 WAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSE 175 Query: 188 FFSLVREEGATLILVTHD 205 L R G T+I VTHD Sbjct: 176 IKKLQRRLGVTMIYVTHD 193 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 108 bits (270), Expect = 1e-25 Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 15/223 (6%) Query: 6 IVLEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGR 65 I LE VVK + + +D V + G+ V++G SG GK+T L LI GL+ P GR Sbjct: 4 IRLEGVVKRFGK----VVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGR 59 Query: 66 VLLEGQDMGALDEEGLAAFRQRDMGFVFQMHYLLRECTSLENVLLPAYMA----GLSFSE 121 +L++G+D+ D + R++ VFQ + L + +N+ ++ GL+ + Sbjct: 60 ILIDGEDVTFKDP------KDRNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDD 113 Query: 122 AAAKARDLLVRVGLGDRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTS 181 + ++ + + D + P QLSGG++QRVA+ARALV P++ L DEP NLD Sbjct: 114 IRRRVIEVAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLR 173 Query: 182 RMVEDVFFSLVREEGATLILVTHDAALA-SRADTVYRLEGGRL 223 + L ++ T + VTHD A A S AD + + GR+ Sbjct: 174 LAMRAELKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRV 216 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 107 bits (268), Expect = 2e-25 Identities = 75/196 (38%), Positives = 105/196 (53%), Gaps = 11/196 (5%) Query: 22 LRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDMGALDEEGL 81 +R +DGV G G+V I+GESG GK+TL I G++ P+ G + G+ L L Sbjct: 35 VRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGE---LLTPHRL 91 Query: 82 AAFRQ--RDMGFVFQMHYLLRECTSL--ENVLLPAYMAGLSFSEAAAK-ARDLLVRVGLG 136 A R+ R + VFQ Y + + V P + GL+ E A + A ++L VGL Sbjct: 92 ARDRRLRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETVGLT 151 Query: 137 DRMHHY---PSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVEDVFFSLVR 193 Y P QLSGG+RQRVAIAR LV P +++ADEP +D + D+ R Sbjct: 152 PGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHR 211 Query: 194 EEGATLILVTHDAALA 209 GAT++L+THD A+A Sbjct: 212 RTGATIVLITHDIAVA 227 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 107 bits (267), Expect = 3e-25 Identities = 68/200 (34%), Positives = 100/200 (50%), Gaps = 10/200 (5%) Query: 6 IVLEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGR 65 I LE V K + G T LD VS G++ ++G SG GK+T L +I G +TP GR Sbjct: 4 IRLESVTKRF--GNTV--ALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGR 59 Query: 66 VLLEGQDMGALDEEGLAAFRQRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSEAAAK 125 V + +D+ L +R+ VFQ + L +N+ + L SE + Sbjct: 60 VYIGSRDVTMLKPY------ERNTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRR 113 Query: 126 ARDLLVRVGLGDRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVE 185 R + + + YP QLSGG++QRVA+ARA+V P ++L DEP NLD + Sbjct: 114 VRWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMR 173 Query: 186 DVFFSLVREEGATLILVTHD 205 + L + G T++ VTHD Sbjct: 174 EEIVRLQKRLGVTIVYVTHD 193 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 106 bits (265), Expect = 4e-25 Identities = 65/187 (34%), Positives = 99/187 (52%), Gaps = 4/187 (2%) Query: 22 LRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDMGALDEEGL 81 ++ +D V+ G RGK ++GESGSGK+T +I L+ PT GR+ +G D+ L GL Sbjct: 49 VKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGL 108 Query: 82 AAFRQRDMGFVFQMHY--LLRECTSLENVLLPAYMAGLSFSEAAAKARDLLVRVGLGD-R 138 FR+R +FQ Y L T + P + G+ + LL +VGL + Sbjct: 109 KEFRRRAQ-IIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQVGLNETH 167 Query: 139 MHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVEDVFFSLVREEGAT 198 ++ YP + SGG+RQR+AIAR L P ++ DEPT LD + ++ L R+ T Sbjct: 168 LYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSLT 227 Query: 199 LILVTHD 205 + ++HD Sbjct: 228 YLFISHD 234 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 106 bits (265), Expect = 4e-25 Identities = 76/238 (31%), Positives = 124/238 (52%), Gaps = 26/238 (10%) Query: 3 DPIIVLEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPT 62 D I+ +E++ K + + LD V+ ERGKV +++G +GSGK+TL+++I G P Sbjct: 4 DIILRVEDLEKRFGG----IVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPD 59 Query: 63 SGRVLLEGQDMGALDEEGLAAFRQRDMGFV--FQMHYLLRECTSLENVLLPA-------Y 113 GRVL +G+D+ G++ +G V FQ+ T LENVL A Y Sbjct: 60 GGRVLFKGRDI-----TGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVY 114 Query: 114 MAGLSF-------SEAAAKARDLLVRVGLGDRMHHYPSQLSGGERQRVAIARALVNGPRI 166 +AGL+ AAA+A ++L VGL +LSGG+ + + IARA++ G + Sbjct: 115 LAGLARRLWLGFEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEM 174 Query: 167 VLADEPTGNLDERTSRMVEDVFFSLVREEGATLILVTHDAALASR-ADTVYRLEGGRL 223 ++ DEP ++ R + + + L RE+G T +++ H L D VY + G++ Sbjct: 175 IIMDEPAAGVNPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKV 232 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 104 bits (259), Expect = 2e-24 Identities = 81/219 (36%), Positives = 115/219 (52%), Gaps = 22/219 (10%) Query: 20 TSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGL-DTPTSGRVLLEGQ----DMG 74 T +L G+S + G V IMG SGSGKSTL+ +I L D RV EG+ +M Sbjct: 16 TDKHILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARV--EGEVWINNMN 73 Query: 75 ALDEEGLAAFRQRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSEAAAKARDLLVRVG 134 + E+ +R G VFQ T ENV + + GL+ ++ K D +V Sbjct: 74 VMKEDPYNI--RRYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNK---KELDEIVEWA 128 Query: 135 LG---------DRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVE 185 L DR+ YP QLSGG+RQR+++ARAL PR++L DEPT N+D ++ +E Sbjct: 129 LKMAHLWDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIE 188 Query: 186 DVFFSLVREEGATLILVTHDAALASR-ADTVYRLEGGRL 223 +EE AT+I+VTH A+R +D + L GR+ Sbjct: 189 QSIVEYAKEEMATVIIVTHTPQQAARISDQILFLYEGRV 227 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 103 bits (257), Expect = 4e-24 Identities = 74/206 (35%), Positives = 103/206 (50%), Gaps = 10/206 (4%) Query: 22 LRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDMGALDEEGL 81 + L GVS F + ++G SG GK+T+L +I GL P GRV G D L E Sbjct: 18 VEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFGGVDYTGLPPE-- 75 Query: 82 AAFRQRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSEAAAKARDLLVRVGLG---DR 138 +R +GFVFQ L T +NV G S E + L VGL + Sbjct: 76 ----RRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWALETVGLTPPREF 131 Query: 139 MHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVEDVFFSLVREEGAT 198 M + LSGG++QRVA+ARA+ P ++L DEP +LD + + + L R+ G+T Sbjct: 132 MGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQRKLGST 191 Query: 199 LILVTHDAALASR-ADTVYRLEGGRL 223 +I VTHD A ADT+ + GR+ Sbjct: 192 MIYVTHDQWEAMELADTLVIMRDGRI 217 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 97.4 bits (241), Expect = 3e-22 Identities = 71/223 (31%), Positives = 118/223 (52%), Gaps = 11/223 (4%) Query: 2 SDPIIVLEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTP 61 S+ ++V EE+VK+Y R +DGVS RG++ ++G +G+GK+T + ++ L P Sbjct: 3 SEAMVVAEELVKDYGG----FRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRP 58 Query: 62 TSGRVLLEGQDMGALDEEGLAAFRQRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSE 121 TSG + G + + E G +R +G V Q E + +NV + A + GL SE Sbjct: 59 TSGEAWIAGYSI--VREPGNV---RRVIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSE 113 Query: 122 AAAKARDLLVRVGLGDRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTS 181 A + R++L + L + H + SGG R+++ IA +LV+ P+++ DEPT LD + Sbjct: 114 ARERTREVLDYLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSR 173 Query: 182 RMVEDVFFSLVREEGATLILVTHDAALASR-ADTVYRLEGGRL 223 R + L R T++L TH A +D V ++ GR+ Sbjct: 174 RSLWRYIEDLKR-SAVTILLTTHYMEEAEMLSDRVAIIDRGRI 215 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 97.1 bits (240), Expect = 3e-22 Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 12/221 (5%) Query: 6 IVLEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGR 65 + + +VK YP G ++ LD V G+VH ++GE+G+GK+TL+ ++ G PT G Sbjct: 13 VAMRGIVKVYPDG---VKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGE 69 Query: 66 VLLEGQDMGALDEEGLAAFRQRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSEAAAK 125 + + G+ + G + + V+Q L+ T EN+ + GL SEA + Sbjct: 70 IYVWGRKVSW---RGPWDAIRNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRR 126 Query: 126 ARDLLVRVGLGDRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVE 185 + R+GL + + L G RQRV I +AL G ++++ DEPT NL T E Sbjct: 127 TLETAERLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNL---TPLEAE 183 Query: 186 DVF--FSLVREEGATLILVTHDAALASR-ADTVYRLEGGRL 223 +F L+++ G +++ +TH R AD V L GR+ Sbjct: 184 KLFSTLRLLKDMGVSVVYITHKLGEVVRVADRVTVLRRGRV 224 Score = 64.3 bits (155), Expect = 2e-12 Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 12/203 (5%) Query: 28 VSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDM-GALD-EEGLAAFR 85 VS G++ I G +G+G+ L+ I GL P G + ++G+ + G+LD + Sbjct: 281 VSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEVQGRRIEGSLDFYRAGGGYI 340 Query: 86 QRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSEAAAKARDLLVRV----GLGDRMHH 141 D G V M Y + E N+ Y A + ++ DL R+ L R Sbjct: 341 AGDRGKVLAMDYSVAE-----NIAFLYYTASKTLLLRRSRLEDLFRRLVERFRLVARSPW 395 Query: 142 YP-SQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVEDVFFSLVREEGATLI 200 P +LSGG +Q+V + ++ G ++++A PT LD T+ V ++ L R+ L+ Sbjct: 396 TPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTSFVRNLLSELARQGAGILL 455 Query: 201 LVTHDAALASRADTVYRLEGGRL 223 + T + +D +Y + GGR+ Sbjct: 456 VSTDLDEILELSDRIYVMSGGRV 478 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 94.7 bits (234), Expect = 2e-21 Identities = 70/203 (34%), Positives = 105/203 (51%), Gaps = 11/203 (5%) Query: 1 MSDPIIVLEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDT 60 M D II LE+V +G L+ L VS RG + VI+G +G+GKSTLL + G T Sbjct: 1 MGDWIIKLEDV----SAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTT 56 Query: 61 PTSGRVLLEGQDMGALDEEGLAAFRQRDMGFVFQMHYLLRECTSLENVLLPAY-MAGLSF 119 GRVL E D+ + A M F+FQ+ + RE T EN+ L Y + F Sbjct: 57 VYKGRVLFENTDVTHMPPHDRAKI---GMTFIFQLENIFRELTVYENLRLAGYDLPEDVF 113 Query: 120 SEAAAKARDLLVRVGLGDRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDER 179 + + + R L +R+ LSGGERQ +A+A ++ P++ L DEPT L + Sbjct: 114 RDRLEEVFSMFPR--LKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPK 171 Query: 180 TSRMVEDVFFSLVREEGATLILV 202 ++ V + ++ +EG T++LV Sbjct: 172 LAKEVLS-YVRILNKEGYTVVLV 193 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 91.3 bits (225), Expect = 2e-20 Identities = 69/221 (31%), Positives = 114/221 (51%), Gaps = 11/221 (4%) Query: 9 EEVVKEYPSG-----ETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTS 63 E +VKEY G ++R LDGV RG + ++G +G+GK+TL+ ++ L P S Sbjct: 8 EALVKEYRMGLLPWRARTIRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDS 67 Query: 64 GRVLLEGQDMGALDEEGLAAFRQRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSEAA 123 G + G D+ + + + +G +++ L + +N+ + + G+ EA Sbjct: 68 GWARVAGFDV-VREANNVRSRIGVVLGGERALYWRL---SGWDNLWFFSQLYGIPPREAK 123 Query: 124 AKARDLLVRVGLGDRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRM 183 + ++LL VGL + H S G +QR+ IAR L+N P ++L DEPT LD + +R Sbjct: 124 RRVKELLEIVGLEEWAHVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAARE 183 Query: 184 VEDVFFSLVREEGATLILVTHDAALASR-ADTVYRLEGGRL 223 V + +VR EG T++L TH A +D V + GR+ Sbjct: 184 VRSIIRRIVR-EGRTVLLTTHYMVEAEELSDRVAIISKGRI 223 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 90.1 bits (222), Expect = 4e-20 Identities = 63/206 (30%), Positives = 110/206 (53%), Gaps = 12/206 (5%) Query: 24 VLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGL-----DTPTSGRVLLEGQDMGALDE 78 V+ +S E+G + ++G +G+GK+TLL + G+ T G + LEG+D+ + Sbjct: 20 VIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNREP 79 Query: 79 EGLAAFRQRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSEAAAKARDLLVRVGLGDR 138 + +A +R + +V + + +E T+ EN++ AY AG S + + L L +R Sbjct: 80 DEIA---RRGVIYVMEGRRIFKELTTEENLVSVAYAAGASRDDIRSV---LSYFPRLKER 133 Query: 139 MHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVEDVFFSLVREEGAT 198 + LSGGE+Q +AIA AL+ P++++ DEP+ L + + + L REEG T Sbjct: 134 LGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHREEGLT 193 Query: 199 LILVTHDAALASR-ADTVYRLEGGRL 223 ++L +A A +D Y +E GR+ Sbjct: 194 ILLAEQNARKALEISDYGYVIENGRI 219 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 90.1 bits (222), Expect = 4e-20 Identities = 73/227 (32%), Positives = 109/227 (48%), Gaps = 41/227 (18%) Query: 22 LRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDMGALDE--- 78 ++ +DGVS ++G++ ++GESGSGK+TL I GL P +G V ++ D G L+E Sbjct: 27 VKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFID-IDKGELEEAVS 85 Query: 79 -------------EGLAAFRQ-------------------RDMGFVFQMHY--LLRECTS 104 E + +R+ R + V Q Y L Sbjct: 86 IYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMKV 145 Query: 105 LENVLLPAYMAGLSFSEAAAKAR--DLLVRVGLGDRM-HHYPSQLSGGERQRVAIARALV 161 E + P + G+ S K R ++L VGLG YP +LSGG+RQRVAIARAL Sbjct: 146 GEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIARALA 205 Query: 162 NGPRIVLADEPTGNLDERTSRMVEDVFFSLVREEGATLILVTHDAAL 208 P+I++ DEPT LD + + L ++ G T +L+THD ++ Sbjct: 206 LNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISV 252 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 89.7 bits (221), Expect = 5e-20 Identities = 73/245 (29%), Positives = 118/245 (48%), Gaps = 31/245 (12%) Query: 3 DPIIVLEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPT 62 DPII +E + + + ++ ++ VS RG+ + ++GE+G GKS + L P Sbjct: 7 DPIIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPP 66 Query: 63 SGRVLLEGQ-----------DMGALDEEGLAAFRQRDMGFVFQMHYLLRECTSLENVLLP 111 GR++ EG+ D+ +LDE+ L R ++ ++FQ +L+ + Sbjct: 67 -GRIV-EGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQ-----DPSAALDPLYTI 119 Query: 112 AYMAG---------LSFSEAAAKARDLLVRVGLGD---RMHHYPSQLSGGERQRVAIARA 159 Y G S E +A +L V + D R+ YP +LSGG +QR I + Sbjct: 120 GYQVGETMLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGIS 179 Query: 160 LVNGPRIVLADEPTGNLDERTSRMVEDVFFSLVREEGATLILVTHDAAL-ASRADTVYRL 218 L N P++++ADEPT LD + D+ L RE G TL+L+TH+ L A D V + Sbjct: 180 LSNRPKLLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVM 239 Query: 219 EGGRL 223 G + Sbjct: 240 YAGNI 244 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 88.6 bits (218), Expect = 1e-19 Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 15/202 (7%) Query: 27 GVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDM---GALDEEGLAA 83 GVS G+ IMG +GSGK+TLL ++ G+ P+ G V + G D+ G + GL Sbjct: 22 GVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVCGYDVWGDGWREARGLIG 81 Query: 84 FRQRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSEAAAKARDLLVRVGLGDRMHHYP 143 F +D + R T E + + + GLS A +AR +L +G D + Sbjct: 82 FAPQDPP-------MARRMTGAEYITVVGGLLGLSPGVARREARRVLEMLGFEDVLGRVV 134 Query: 144 SQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVEDVFFSLVRE-EGATLILV 202 ++LSGG+R+ + IA AL + P +V+ DEP LD R E ++ SL + +G T++ Sbjct: 135 ARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRAR---ESLWASLRKAFKGRTVLFS 191 Query: 203 THDAALA-SRADTVYRLEGGRL 223 +HD A + +D V + GRL Sbjct: 192 SHDPQEAEAESDRVLIMHRGRL 213 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 84.7 bits (208), Expect = 2e-18 Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 25/213 (11%) Query: 22 LRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQD--MGALDEE 79 ++ +DGVS RG+V ++GESG GK+T I L T GRV + + + L+ Sbjct: 47 VKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERR 106 Query: 80 GLAAFR-----------------QRDMGFVFQMHY-LLRECTSLENVLLPAYMA-----G 116 G+ + +R++ V+Q Y L +++ +L + Sbjct: 107 GVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNA 166 Query: 117 LSFSEAAAKARDLLVRVGLGDRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNL 176 E A+ + + D M YP QLSGG+RQRVAIARA + P +V+ADEP L Sbjct: 167 REREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSML 226 Query: 177 DERTSRMVEDVFFSLVREEGATLILVTHDAALA 209 D + ++ + G +L+ +THD A+A Sbjct: 227 DVSIRAEILELLLGFREKLGTSLLFITHDLAVA 259 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 84.0 bits (206), Expect = 3e-18 Identities = 78/224 (34%), Positives = 107/224 (47%), Gaps = 19/224 (8%) Query: 3 DPIIVLEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPT 62 D ++ VVK+Y VLD V RG+ ++G +G+GK+TL+ + GL Sbjct: 2 DTVLEARGVVKKYRGQP----VLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRD 57 Query: 63 SGRVLLEGQDMGALDEEGLAAFRQRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSEA 122 GRVLL G D + +G VF+ L +E + A + G S S Sbjct: 58 GGRVLLNGLDPWREPRA------REGVGVVFERPNLPSSMPVVEFLESAAAIIGSSPSRV 111 Query: 123 AAKARDLLVRV-GL-GDRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERT 180 D +R GL G +P QLS G +QR AIA AL+ PR ++ADEPT NLD Sbjct: 112 -----DWAIRAAGLEGHEWKTFP-QLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLE 165 Query: 181 SRMVEDVFFSLVREEGATLILVTHDAALASRADT-VYRLEGGRL 223 R V + L RE G +L++ +H R T +Y L GGRL Sbjct: 166 RREVLRLLARLNREHGLSLLVSSHVIVELLRVATRIYVLAGGRL 209 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 83.6 bits (205), Expect = 4e-18 Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 12/187 (6%) Query: 22 LRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDMGALDEEGL 81 + L GVS RG+ ++G +G+GK+TL ++I G+ P GRV+ +G D+ G Sbjct: 17 IEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYKGVDI-----TGW 71 Query: 82 AAFRQRDMGF--VFQMHYLLRECTSLENVLLPAYMAGLSFSEAAAKARDLLVRVGLGDRM 139 A+R+ G FQ+ L T L NV++ A + EA +A + + VGL + Sbjct: 72 PAYRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAMEAIDMVGLAGKE 131 Query: 140 HHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVEDVFFSL--VREEGA 197 L+ E++R+ +ARAL P ++L DE L R V+D+ ++L + + G Sbjct: 132 DILAKDLNLIEKKRLELARALATQPELLLLDEIAAGL---RPREVDDLVYTLLEISKRGI 188 Query: 198 TLILVTH 204 T+I+V H Sbjct: 189 TIIMVEH 195 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 83.2 bits (204), Expect = 5e-18 Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 22/231 (9%) Query: 1 MSDPIIVLEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDT 60 M++P++ ++ + Y GE + L GVS +G++ ++G +G+GK+T L I GL Sbjct: 2 MAEPLLEVKSIDVYY--GE--FQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLK 57 Query: 61 PTSGRVLLEGQDMGALDEEGLAAFRQRDMGF--VFQMHYLLRECTSLENVLLPAYMAGLS 118 P +G ++ +G+D+ GL AF++ + G V + + T EN+ + A S Sbjct: 58 PRNGSIIWQGRDI-----TGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRVAA-----S 107 Query: 119 FSEAAAKARDLLVRVG-----LGDRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPT 173 A +D L +V L R LSGGE+Q +AIARAL+ P +++ DEP+ Sbjct: 108 TRRAKEHFQDSLEQVYTIFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPS 167 Query: 174 GNLDERTSRMVEDVFFSLVREEGATLILVTHDAALASR-ADTVYRLEGGRL 223 L + +R V + L E G T++LV + L+ + AD Y +E GR+ Sbjct: 168 LGLAPKLARDVIYLASRLREELGVTILLVEQNVGLSLKVADRGYVMETGRI 218 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 83.2 bits (204), Expect = 5e-18 Identities = 66/244 (27%), Positives = 119/244 (48%), Gaps = 30/244 (12%) Query: 1 MSDPIIVLEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDT 60 MS+ ++ + ++ Y + + + LDGV +G++ I+GESG GKSTL I + Sbjct: 1 MSEIVLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILP 60 Query: 61 PTS----GRVLLE-----GQDMGALDEEGLAAFRQRDMGFVFQ--------MHYLLRECT 103 + G ++L D+ L E+ L R + + +FQ +H + ++ T Sbjct: 61 SNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVT 120 Query: 104 SLENVLLPAYMAGLSFSEAAAKARDLLVRVGLGDR---MHHYPSQLSGGERQRVAIARAL 160 +++G A+++L ++ + + YP +LSGG +QR+ IA +L Sbjct: 121 D--------HVSGEK-RRVEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASL 171 Query: 161 VNGPRIVLADEPTGNLDERTSRMVEDVFFSLVREEGATLILVTHDAALASR-ADTVYRLE 219 + PRI++ADEPT LD + + L E T+IL+TH+ A+A+ AD + + Sbjct: 172 ITRPRIIIADEPTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMY 231 Query: 220 GGRL 223 G + Sbjct: 232 AGHV 235 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 81.3 bits (199), Expect = 2e-17 Identities = 73/224 (32%), Positives = 101/224 (45%), Gaps = 25/224 (11%) Query: 8 LEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVL 67 LE V Y TS VL GVS + G + ++G +GSGK+TLL L+ G+ P+ GRV Sbjct: 8 LEGVEARY---NTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVE 64 Query: 68 LEGQDMGALDEEGLAAFRQRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSEAAAKAR 127 + G G + +R +G+ + ++E LL Y SE A R Sbjct: 65 VCGSPPGRV---------RRMLGYAPASPEVDPRLKAVEVALLYRY----GVSEGVAWGR 111 Query: 128 -------DLLVRVGLGDRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERT 180 L +G+G+ +LS G+R+ V +A L P + L DEP LD Sbjct: 112 RDWEEVLAALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSN 171 Query: 181 SRMVEDVFFSLVREEGATLILVTHDAALASRADTVYRLEGGRLH 224 R V V SL AT++ THD A AD+V L G LH Sbjct: 172 MRRVTLVLRSL--RGRATIVYTTHDPLAAMAADSVIMLREGLLH 213 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 79.0 bits (193), Expect = 1e-16 Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 11/202 (5%) Query: 6 IVLEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGR 65 + +E++ YP G + L GV+ F G V ++GE+G+GK+TLL I G+ P GR Sbjct: 5 LAVEDLDVVYPGG---VHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGR 61 Query: 66 VLLEGQDMGALDEEGLAAFRQRDMGFVFQMHYLLRECTSLENVLLPAYMAG--LSFSEAA 123 +L++G + L +G + + Q + + E++ + +AG +A Sbjct: 62 ILVDGYE---LRPKGPGDSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQAR 118 Query: 124 AKARDLLVRVGLGDRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNL-DERTSR 182 + +GL Y ++ ERQR+ + +AL G R VL DEPT +L E +R Sbjct: 119 TMLAEASEALGLNIDPDRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAAR 178 Query: 183 MVEDVFFSLVREEGATLILVTH 204 M+E + GA ++LVTH Sbjct: 179 MLEAA--GRLAASGAAVLLVTH 198 Score = 52.8 bits (125), Expect = 7e-09 Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 22/201 (10%) Query: 34 RGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDMG-----ALDEEGLAAFRQRD 88 +G+V + G +G+G+ L +I GL P GR+L+ G D+ A GL + Sbjct: 279 QGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRLGLGVIPEER 338 Query: 89 MGFVFQMHYLLRECTSLENVLLPAYMAGLSF--------SEAAAKARDLLVRVGLGDRMH 140 +G H L+ + N+ L + A F A RD+ ++ +M Sbjct: 339 LG-----HALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGIKAVSPRQM- 392 Query: 141 HYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVEDVFFSLVREEGATLI 200 +LSGG QR+ +AR L PR+++A P LD + V ++ + E G L+ Sbjct: 393 --VDELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEM-MRMSSERGGVLV 449 Query: 201 LVTHDAALASRADTVYRLEGG 221 + L ++ +Y GG Sbjct: 450 IDEDLDFLLRVSNKIYVASGG 470 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 77.8 bits (190), Expect = 2e-16 Identities = 63/232 (27%), Positives = 112/232 (48%), Gaps = 17/232 (7%) Query: 1 MSDPIIVLEEVVKEYPSGETSLRVLD---GVSGGFERGKVHVIMGESGSGKSTLLHLIGG 57 M+ +I +VK + SG RV++ GVS G+++ +G +G+GK+T + ++ Sbjct: 1 MAGAMIEARGLVKRFVSGRIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILST 60 Query: 58 LDTPTSGRVLLEGQDMGALDEE---GLAAFRQRDMGFVFQMHYLLRECTSLENVLLPAYM 114 L P G + G D+ E + + GF +++ T EN+ + Sbjct: 61 LLDPDGGEARVAGFDVVKERWEVRKRIGVMLSVERGFYWKL-------TGRENLYYFGRI 113 Query: 115 AGLSFSEAAAKARDLLVRVGLGDR--MHHYPSQLSGGERQRVAIARALVNGPRIVLADEP 172 G+ E ++ +++L VGL D ++S G + R+ +AR L+ P +++ DEP Sbjct: 114 YGIPQGELKSRIKEVLDLVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEP 173 Query: 173 TGNLDERTSRMVEDVFFSLVREEGATLILVTHDAALASR-ADTVYRLEGGRL 223 T LD ++R + V SL EG T+ + TH+ A +D V + GGR+ Sbjct: 174 TLGLDPASARTIRGVIRSLA-SEGRTIFITTHNMVEAEMISDRVGIIIGGRI 224 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 74.7 bits (182), Expect = 2e-15 Identities = 63/203 (31%), Positives = 99/203 (48%), Gaps = 14/203 (6%) Query: 24 VLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDMGALDEEGLAA 83 VL GVS + G++HV+ G +G+GK+T L ++ GL + SG + G D E + Sbjct: 29 VLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPWGGGFERVKG 88 Query: 84 FRQRDMGFVFQMHYLLRECTSLENVLLPA--YMAGLSFSEAAAKA--RDLLVRVGLGDRM 139 ++G++ + + T +EN+L A Y E A L R L R Sbjct: 89 ----EVGYLPEDASVYERLTGMENILFYARLYSGWRDVEELVENAVFYSGLSREDLARRA 144 Query: 140 HHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVEDVFFSLVREEGATL 199 Y S G ++R+ + L++ PR+V+ DEPT +D S ++ + L R EG + Sbjct: 145 GGY----SKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSR-EGRAI 199 Query: 200 ILVTHDAALASR-ADTVYRLEGG 221 ++ THD ALA AD V + GG Sbjct: 200 LVTTHDLALAEEIADRVTIIHGG 222 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 73.9 bits (180), Expect = 3e-15 Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 23/217 (10%) Query: 25 LDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDMGALDEEGLAAF 84 LD VS RG++ I+G +G+GK++LL++I G+ P GRV +G+D+ GL Sbjct: 17 LDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDI-----TGLKPH 71 Query: 85 RQRDMGF--VFQMHYLLRECTSLENVL---------------LPAYMAGLSFSEAAAKAR 127 ++ +G FQ L T LEN++ L A+ A EA +A Sbjct: 72 QRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWEVEARERAE 131 Query: 128 DLLVRVGLGDRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVEDV 187 ++ + L + H L G +++V +A AL P +VL DEP L + + Sbjct: 132 HVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEKEDIVRA 191 Query: 188 FFSLVREEGATLILVTHDAALASR-ADTVYRLEGGRL 223 T++L+ HD + + D V ++ G++ Sbjct: 192 IIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKV 228 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 72.4 bits (176), Expect = 9e-15 Identities = 68/204 (33%), Positives = 95/204 (46%), Gaps = 19/204 (9%) Query: 24 VLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDMGALDEEGLAA 83 VL GVS G+ V+ G +GSGK+TLL L GL P+ GRV G Sbjct: 19 VLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRV-----------SWGCPR 67 Query: 84 FRQRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSE--AAAKARDLLVRVGLGDRMHH 141 + +G+V + + T ENV + + G S + AA+A LL GL H Sbjct: 68 GPRGCVGYVGHTPMVYGDLTVWENVEFFSSLHGGSLGDYPLAAEAWRLL---GLEKYGSH 124 Query: 142 YPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVEDVFFSLVREEGATLIL 201 SQLS G R+R+ + RAL+ PR++L DE LD+ S + + L EG L++ Sbjct: 125 LASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRL-LRLALGEGLALLM 183 Query: 202 VTH--DAALASRADTVYRLEGGRL 223 T + A VY L+ G L Sbjct: 184 TTPLLEPRYLGLASRVYTLQDGLL 207 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 71.2 bits (173), Expect = 2e-14 Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 11/168 (6%) Query: 40 IMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDMGALDEEGLAAFRQRDMGFVFQMHYL- 98 ++G +G+GK+TLL I GL P++G +L+EG + + E L +G+V ++ + Sbjct: 34 VLGPNGAGKTTLLKTILGLVKPSAGEILVEGVNPRSPGFEKLLP----RIGYVPELPVVP 89 Query: 99 --LRECTSLENVLLPAYMAGLSFSEAAAKARDLLVRVGLGDRMHHYPSQLSGGERQRVAI 156 C LE + A + G + EA +AR+ L VGL +LS G R+RV + Sbjct: 90 LWTTPCILLETL---ARLEGYTSVEARVRAREALEVVGLAGECETPIGKLSKGARKRVLV 146 Query: 157 ARALVNGPRIVLADEPTGNLDERTSRMVEDVFFSLVREEGATLILVTH 204 A+A + +++ DEP LD V ++ ++ R EGAT+I+ +H Sbjct: 147 AQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAR-EGATVIVSSH 193 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 67.4 bits (163), Expect = 3e-13 Identities = 68/219 (31%), Positives = 97/219 (44%), Gaps = 19/219 (8%) Query: 5 IIVLEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSG 64 ++ L +V YP G LR GVS RG + ++ G +G GKST+L + GL T G Sbjct: 3 VVRLRDVWYRYPGGGWVLR---GVSLEAPRG-ITLLAGPTGGGKSTILRVAAGLATRIYG 58 Query: 65 RVLLEGQDMGALDEEGLAAFRQRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSEAAA 124 L G ++ G +D + T E + +GL EA Sbjct: 59 GYL-----RGEVEARGKPVLVPQDYDL------FILSLTPREELEYCYEASGLPPWEARR 107 Query: 125 KARDLLVRVGLGDRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMV 184 +A L +G+ D + S+LS GERQRVAIA AL G ++L DEP D V Sbjct: 108 EAVRLAEELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLG---V 164 Query: 185 EDVFFSLVREEGATLILVTHDA-ALASRADTVYRLEGGR 222 E + L R + +++ H L A +VY + GR Sbjct: 165 ESLIRLLRRLDVEGVVVAEHRVHYLLPAASSVYLVYDGR 203 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 66.6 bits (161), Expect = 5e-13 Identities = 60/218 (27%), Positives = 106/218 (48%), Gaps = 36/218 (16%) Query: 24 VLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDT--PTSGRVLLEGQDMGALDEEGL 81 VL+ V + G+VH +MG +GSGKS+L ++I G + G +LL+G+ + L E Sbjct: 17 VLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDILLDGESIKELPPE-- 74 Query: 82 AAFRQRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSEAAAKARDLLVRVG--LGDRM 139 +R + +F ++ + V L + + ++F A+DL + RM Sbjct: 75 ----ERALKGIFMAQ---QDPPQIPGVRLSSLI--IAFVNKRLGAQDLSKPADPKIVKRM 125 Query: 140 HHYPSQL---------------SGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMV 184 + Y ++L SGGE++R + +A++ P+IV+ DEP LD ++V Sbjct: 126 YEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGLKIV 185 Query: 185 EDVFFSLVREEGATLILVTHDAALAS-----RADTVYR 217 + F +R+ G ++L+TH A L + R +YR Sbjct: 186 AE-FIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYR 222 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 62.8 bits (151), Expect = 7e-12 Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 12/203 (5%) Query: 24 VLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDMGALDEEGLAA 83 VL VS RG V+ ++G +G+GK+TL + GL GRV L G+ + + G + Sbjct: 23 VLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALLGEPV---ERAGGSL 79 Query: 84 FRQRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSEAAAKARDLLVRVG--LGDRMHH 141 FR+ + ++ + R T E + L A + G+ E + L +G LG+R+ Sbjct: 80 FRR--VAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLEGYLEEASRLSGLGGRLGERVRS 137 Query: 142 YPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVEDVFFSLVREEGATLIL 201 Y S G R+R+ +A L P + + DEPT LD S + + G T++L Sbjct: 138 Y----SKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERHGVTVLL 193 Query: 202 VTHDA-ALASRADTVYRLEGGRL 223 +H+ + S + + GR+ Sbjct: 194 SSHNMYEVESVCSEITMISSGRI 216 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 62.4 bits (150), Expect = 9e-12 Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 12/188 (6%) Query: 24 VLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDMGALDEEGLAA 83 VL GV+ F + I+G +G+GK+T L I GL P GRV L+G + G Sbjct: 17 VLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLDG-----FEATGRPE 71 Query: 84 FRQRDMGFVFQMHYL--LRECTSLENVLLPAYMAGLSFSEAAAKARDLLVRVGL-GDRMH 140 R G+V Q L T E V + G+ + A +A ++L +G+ G+ + Sbjct: 72 MVGRYAGYVPQNPSAPKLSPMTVREFVETSLRLRGV--TRARERAVEVLHTLGIRGEVLE 129 Query: 141 HYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVEDVFFSLVREEGATLI 200 +LS G QRV IARA+ P++++ DEP ++D + + L RE ++ Sbjct: 130 SRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAGLARER--LVL 187 Query: 201 LVTHDAAL 208 + +HD +L Sbjct: 188 MTSHDPSL 195 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 57.8 bits (138), Expect = 2e-10 Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 14/195 (7%) Query: 35 GKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDMGALDEEGLAAFRQRDMGFVFQ 94 G+V ++G +G+GK+T L ++ G P GRV EG + +E L FR ++ F+ Sbjct: 106 GQVVGLLGRNGTGKTTALRILAGELKPNLGRV--EGGEPEW--DEILKRFRGSELQTYFR 161 Query: 95 --MHYLLRECTSLENV-LLPAYMAG-----LSFSEAAAKARDLLVRVGLGDRMHHYPSQL 146 + LR ++ V L+P + G L ++ A +L +VGL QL Sbjct: 162 KLVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGVALELAEQVGLDKVFDRDVRQL 221 Query: 147 SGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVEDVFFSLVREEGATLILVTHD- 205 SGGE Q++ I L + + DEP+ LD R + + R GA +++V HD Sbjct: 222 SGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAAR-PGAYVMVVEHDL 280 Query: 206 AALASRADTVYRLEG 220 A L +D V+ L G Sbjct: 281 AVLDYVSDLVHILYG 295 Score = 51.6 bits (122), Expect = 2e-08 Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 27/197 (13%) Query: 18 GETSLRV-LDGVS-----GGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQ 71 G T LRV LDG + G G+V + G +G GK+T + + G P G V + Sbjct: 360 GWTGLRVALDGFTLTSGEGALYGGEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYVE 419 Query: 72 DMGALDEEGLAAFRQRDMGFVFQMHYLLREC---TSLENVLLPAYMAGLSFSEAAAKARD 128 D+ ++ Y+ E ++E VL A A L+ + + Sbjct: 420 DLRVS----------------YKPQYISPESLPDATVEQVLKAANPAILA--PGSWLNLE 461 Query: 129 LLVRVGLGDRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVEDVF 188 L+ R+ L + LSGGE Q+VA+A AL + L DEP+ LD V Sbjct: 462 LVKRMRLDKLLERRVRTLSGGELQKVAVAAALAREADVYLLDEPSAYLDVEERVGVARAI 521 Query: 189 FSLVREEGATLILVTHD 205 +V A ++V HD Sbjct: 522 RRIVETREAAALVVEHD 538 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 57.4 bits (137), Expect = 3e-10 Identities = 66/223 (29%), Positives = 99/223 (44%), Gaps = 21/223 (9%) Query: 5 IIVLEEVVKEYPSGETSLRVLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSG 64 +I +E +VK Y S E L GVS G+V +G +G+GK+T + ++ G PTSG Sbjct: 4 VIEVEGLVKRYGSVEA----LRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSG 59 Query: 65 RVLLEGQDMGALDEEGLAAFRQRDMGFV---FQMHYLLRECTSLENVLLPAYMAGLSFSE 121 + G + L G + R+R +G+V F+ + + L+ Y L Sbjct: 60 SARVFGVE---LYNPGASGVRRR-VGYVPGEFEFYGGVSGGRMLD------YWCRLVGGC 109 Query: 122 AAAKARDLLVRVGLGDRMHHYPSQLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTS 181 + R+LL L + S G +Q +A+ A + P +V+ DEPT LD Sbjct: 110 SRGVVRELLEAFPL--PLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLAR 167 Query: 182 RMVEDVFFSLVREEGATLILVTHDAALASR-ADTVYRLEGGRL 223 V D S R EG T+ +H + R AD V L G L Sbjct: 168 GRVLDFVRSKAR-EGVTVFFSSHVLSEVQRVADRVGLLRSGVL 209 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 56.6 bits (135), Expect = 5e-10 Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 29/202 (14%) Query: 24 VLDGVSGGFERGKVHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDMGALDEEGLAA 83 VL V+ G V ++G SG+GK+TLL +I G+ L G+ Sbjct: 455 VLKDVNITVNPGSVAAVVGASGAGKTTLLRMI-------LGKAL------------GIGG 495 Query: 84 FRQRDMGFVFQMHYLLRECTSLENVLLPAYMAGLSFSEAAAKARD------LLVRVGLGD 137 R V ++ + L L P++ A+K D +L VGLGD Sbjct: 496 EGYRPDSGVVKIPTNTKAAALLPGELEPSFGGETLLEHVASKLGDPGAAVEVLSSVGLGD 555 Query: 138 RMHHYPS--QLSGGERQRVAIARALVNGPRIVLADEPTGNLDERTSRMVEDVFFSLVREE 195 + S +LS G+++R +A L P +++ DE +LD T+R + L R + Sbjct: 556 AIFFRASFGELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLTARRIARKLGKLARSK 615 Query: 196 GATLILVTHDAAL--ASRADTV 215 G TLI+ T+ + A + DTV Sbjct: 616 GITLIVSTNRPEILDALQPDTV 637 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 49.7 bits (117), Expect = 6e-08 Identities = 52/175 (29%), Positives = 71/175 (40%), Gaps = 30/175 (17%) Query: 37 VHVIMGESGSGKSTLLHLIGGLDTPTSGRVLLEGQDMGALDEEGLAAFRQRDMGFVFQMH 96 V I+G +GSGK+TLL L L P G V EG R +G Q Sbjct: 18 VTAILGANGSGKTTLLKLAARLLKPDRGSV------------EG-----PRRVGAALQNP 60 Query: 97 YLLRECTSLENVLLPAYMAGLSFSEAA-AKARDLLVRVGLGDRMHHYPSQLSGGERQRVA 155 YL L P L+ + +A LL GL P LS GE + ++ Sbjct: 61 YL--------GFLGPTVAEDLARTAGGRGEALKLLREAGLEYASERSPYTLSMGEARILS 112 Query: 156 IARALVNGPRIVLADEPTGNLDERTSRMVEDVFFSLVREEGATLILVTHDAALAS 210 + A+ GP V+ DEPT LD R + SL+ G +++ HD A+ Sbjct: 113 VLMAISWGPEAVVIDEPTSGLDGSGKRWLA----SLIARLGVPVLVAGHDIDFAA 163 >gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1] Length = 919 Score = 41.2 bits (95), Expect = 2e-05 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 11/110 (10%) Query: 114 MAGLSFSEAAAKARDLLVRVGLGDRMHHYPSQLSGGERQRVAIARAL-----VNGPRIVL 168 +AG+ E AA R++ V+ G+ + +SGGER +A++ L V G L Sbjct: 797 VAGVEIREKAA--REIEVKAIGGNGAYRPLEAVSGGERTVLALSFVLALNKAVGGKLGFL 854 Query: 169 A-DEPTGNLDERTSRMVEDVFFSLVREEGAT--LILVTHDAALASRADTV 215 A DEPT NLDE R + +V + EG L++VTH + ADT+ Sbjct: 855 ALDEPTANLDEDRRRSLVEVLRG-ISVEGLVRQLVVVTHHEDVRDYADTI 903 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 247,766 Number of Sequences: 1700 Number of extensions: 11731 Number of successful extensions: 153 Number of sequences better than 1.0e-04: 42 Number of HSP's better than 0.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 51 length of query: 226 length of database: 492,079 effective HSP length: 74 effective length of query: 152 effective length of database: 366,279 effective search space: 55674408 effective search space used: 55674408 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718925|ref|YP_003874457.1| lipoprotein releasing system, permease [Spirochaeta thermophila DSM 6192] (432 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.142 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 290,502 Number of Sequences: 1700 Number of extensions: 10263 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 432 length of database: 492,079 effective HSP length: 79 effective length of query: 353 effective length of database: 357,779 effective search space: 126295987 effective search space used: 126295987 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718926|ref|YP_003874458.1| hypothetical protein STHERM_c12440 [Spirochaeta thermophila DSM 6192] (354 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.140 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 334,435 Number of Sequences: 1700 Number of extensions: 14028 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 354 length of database: 492,079 effective HSP length: 78 effective length of query: 276 effective length of database: 359,479 effective search space: 99216204 effective search space used: 99216204 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718927|ref|YP_003874459.1| signal recognition particle-docking protein FtsY [Spirochaeta thermophila DSM 6192] (289 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431321|ref|NP_147702.2| signal recognition particle protei... 161 2e-41 gi|14601593|ref|NP_148133.1| signal recognition 54 kDa protein [... 98 3e-22 >gi|118431321|ref|NP_147702.2| signal recognition particle protein [Aeropyrum pernix K1] Length = 308 Score = 161 bits (407), Expect = 2e-41 Identities = 87/190 (45%), Positives = 126/190 (66%), Gaps = 8/190 (4%) Query: 98 KTTTIAKFAHFIRSTWGRDDVVLAAGDTFRAGAIDQLRVWGERLGVRVVAQQPGADPAAV 157 KTTTIAK A+ +R V+AA DTFRAGA +QL V E+LGV +V + G DPA+V Sbjct: 126 KTTTIAKVAYMLRKAGVTP--VIAAADTFRAGAQEQLAVHAEKLGVPIVRGRYGGDPASV 183 Query: 158 IFDAIQSVERRGGGVVLADTAGRFHNRASLMDELAKVDRVIRSKAADADYRRLLVVDAST 217 +DA++ E RG VL DTAGR H ++L++EL K+ RV++ DY ++LVVD+ T Sbjct: 184 AYDAVKHAESRGFCAVLVDTAGRMHVDSNLVEELRKIVRVVK-----PDY-KILVVDSLT 237 Query: 218 GQNAFRQAEVFQETVGLDGLVLAKYDGAAKGGVLVPISRRLEIPAVFVGTGEGLEDLRPF 277 G +A QA +F E VG+DG+++ K D KGG LV ++ + P +++GTG+ EDLRPF Sbjct: 238 GNDAVEQARLFDEAVGVDGVIVTKVDADPKGGTLVSVAHAIRKPILYIGTGQRYEDLRPF 297 Query: 278 DVEEYLSRLV 287 D ++ + +L+ Sbjct: 298 DPQKIVDQLL 307 >gi|14601593|ref|NP_148133.1| signal recognition 54 kDa protein [Aeropyrum pernix K1] Length = 441 Score = 97.8 bits (242), Expect = 3e-22 Identities = 82/289 (28%), Positives = 132/289 (45%), Gaps = 22/289 (7%) Query: 11 LWGGARFD---EAFWEEFEDLLIEADLGAETAFEVVEEVQRRA-KKXXXXXXXXXXXXIK 66 L GG ++ +AF ++ + LI+AD+ + V ++ RA K+ IK Sbjct: 13 LRGGGVYEKAVDAFVKDLQRELIKADVNVKLVLNVTRRIKERALKEEPPPGVTRRDWMIK 72 Query: 67 DVLRRYVR--AGDFSL---PDSXXXXXXXXXXXXXXKTTTIAKFAHF-IRSTWGRDDVVL 120 V V+ GD P KTTT K A++ +R + V L Sbjct: 73 IVYEELVKLFGGDQEPQVDPPKTPWIVLLVGVQGSGKTTTAGKLAYYYVRRGY---KVGL 129 Query: 121 AAGDTFRAGAIDQLRVWGERLGVRVVAQQPGADPAAVIFDAIQSVERRGGGVVLADTAGR 180 + DT R GA +QL+ E G ++ G DPA + ++ + RG +V+ DTAGR Sbjct: 130 VSSDTHRPGAYEQLKRLAEEAGAMFYGEREG-DPAEIARRGLEDLLSRGAEIVIVDTAGR 188 Query: 181 FHN--RASLMDELAKVDRVIRSKAADADYRRLLVVDASTGQNAFRQAEVFQETVGLDGLV 238 + A L+DE+ + +R LV+DAS GQ A AE F ++ + ++ Sbjct: 189 HGHGEEARLLDEMKAIASKVRPDEV------ALVIDASIGQKAMGLAERFHKSTPIGSII 242 Query: 239 LAKYDGAAKGGVLVPISRRLEIPAVFVGTGEGLEDLRPFDVEEYLSRLV 287 + K DG A+GG + + F+GTGE L +L PF +++R++ Sbjct: 243 VTKMDGTARGGGALTAAAVTGARIKFIGTGETLGELEPFAPRRFVARIL 291 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 286,328 Number of Sequences: 1700 Number of extensions: 12302 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 2 length of query: 289 length of database: 492,079 effective HSP length: 76 effective length of query: 213 effective length of database: 362,879 effective search space: 77293227 effective search space used: 77293227 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718928|ref|YP_003874460.1| hypothetical protein STHERM_c12460 [Spirochaeta thermophila DSM 6192] (468 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 505,665 Number of Sequences: 1700 Number of extensions: 25185 Number of successful extensions: 75 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75 Number of HSP's gapped (non-prelim): 0 length of query: 468 length of database: 492,079 effective HSP length: 80 effective length of query: 388 effective length of database: 356,079 effective search space: 138158652 effective search space used: 138158652 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718929|ref|YP_003874461.1| peptide chain release factor 2 [Spirochaeta thermophila DSM 6192] (361 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 325,359 Number of Sequences: 1700 Number of extensions: 13341 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 361 length of database: 492,079 effective HSP length: 78 effective length of query: 283 effective length of database: 359,479 effective search space: 101732557 effective search space used: 101732557 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718930|ref|YP_003874462.1| cellulase, glycosyl hydrolase family 5 [Spirochaeta thermophila DSM 6192] (431 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.133 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 405,508 Number of Sequences: 1700 Number of extensions: 16742 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 431 length of database: 492,079 effective HSP length: 79 effective length of query: 352 effective length of database: 357,779 effective search space: 125938208 effective search space used: 125938208 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718931|ref|YP_003874463.1| hypothetical protein STHERM_c12490 [Spirochaeta thermophila DSM 6192] (396 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 371,198 Number of Sequences: 1700 Number of extensions: 16360 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 0 length of query: 396 length of database: 492,079 effective HSP length: 79 effective length of query: 317 effective length of database: 357,779 effective search space: 113415943 effective search space used: 113415943 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718932|ref|YP_003874464.1| alpha-amylase 1 [Spirochaeta thermophila DSM 6192] (646 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 705,529 Number of Sequences: 1700 Number of extensions: 34256 Number of successful extensions: 81 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81 Number of HSP's gapped (non-prelim): 0 length of query: 646 length of database: 492,079 effective HSP length: 83 effective length of query: 563 effective length of database: 350,979 effective search space: 197601177 effective search space used: 197601177 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718933|ref|YP_003874465.1| hypothetical protein STHERM_c12510 [Spirochaeta thermophila DSM 6192] (1259 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,369,826 Number of Sequences: 1700 Number of extensions: 65795 Number of successful extensions: 170 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 170 Number of HSP's gapped (non-prelim): 0 length of query: 1259 length of database: 492,079 effective HSP length: 88 effective length of query: 1171 effective length of database: 342,479 effective search space: 401042909 effective search space used: 401042909 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718934|ref|YP_003874466.1| hypothetical protein STHERM_c12520 [Spirochaeta thermophila DSM 6192] (162 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.134 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 123,479 Number of Sequences: 1700 Number of extensions: 3911 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 162 length of database: 492,079 effective HSP length: 70 effective length of query: 92 effective length of database: 373,079 effective search space: 34323268 effective search space used: 34323268 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718935|ref|YP_003874467.1| hypothetical protein STHERM_c12530 [Spirochaeta thermophila DSM 6192] (458 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431362|ref|NP_147783.2| isomerizing glucosamine--fructose-... 87 6e-19 >gi|118431362|ref|NP_147783.2| isomerizing glucosamine--fructose-6-phosphate aminotransferase [Aeropyrum pernix K1] Length = 617 Score = 87.4 bits (215), Expect = 6e-19 Identities = 71/217 (32%), Positives = 105/217 (48%), Gaps = 5/217 (2%) Query: 3 EGAAAPRLAYYGIYALQHRGQESAGIAMVRPDGSIGLHKGMGLVAEVFSEQTLAGLEGHA 62 EG + G+ L++RG +S G+A++ P G + + K G + EV + L G Sbjct: 11 EGNSVAGALVRGLKRLEYRGYDSMGVAVIEPPGRLVVRKAAGKIGEVVRRTGVLSLRGRV 70 Query: 63 AIAHTRYSTTGSSTLENAQPLLAQSKLGTLAIAHNGNLVNAGVLRDLLEETGTVFHTTND 122 I HTR++T G NA P G +A+ HNG + N LR LE G + D Sbjct: 71 GIGHTRWATHGPPNDVNAHPHTDCG--GRVAVVHNGVIRNYASLRRELEARGHRLVSETD 128 Query: 123 SEVILNLISRRARKGLE--TALTETLQVIQGSYAMVLLTPEYLIGVRDPRGIRPLCLGEI 180 +E++ +LI +G AL+ +V++GSYA+ LL V R PL +G Sbjct: 129 TELVAHLIEEYLGRGYSFLEALSLLGRVLRGSYALALLHLGEPDKVYFLRYKSPLVVGLG 188 Query: 181 EGGYVLASESCSLDAVGARLVRDVEPGEILIIGKEGV 217 EG +AS+ ++ V AR V +E GE I EGV Sbjct: 189 EGVNAVASDITAVLDV-ARDVIVLEDGEFGWISPEGV 224 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 476,820 Number of Sequences: 1700 Number of extensions: 22636 Number of successful extensions: 77 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75 Number of HSP's gapped (non-prelim): 1 length of query: 458 length of database: 492,079 effective HSP length: 80 effective length of query: 378 effective length of database: 356,079 effective search space: 134597862 effective search space used: 134597862 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718936|ref|YP_003874468.1| phosphoribosylformylglycinamidine cyclo-ligase [Spirochaeta thermophila DSM 6192] (338 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431701|ref|NP_148343.2| hydrogenase expression/formation p... 41 5e-05 >gi|118431701|ref|NP_148343.2| hydrogenase expression/formation protein HypE [Aeropyrum pernix K1] Length = 345 Score = 40.8 bits (94), Expect = 5e-05 Identities = 83/319 (26%), Positives = 116/319 (36%), Gaps = 43/319 (13%) Query: 20 QHAVRRYAESAKTTFGPEVLEGIGSFA-GFFHLRGYRDPVLVAGTDGVGTKLEIAFAMDR 78 Q A RR A S T GP V E + G L + DP+ AG Sbjct: 22 QQAGRRRAGS--TRVGPSVGEDAAIVSLGPIDLVMHLDPITEAGA--------------- 64 Query: 79 YEAAGVDCVAMCVNDILCHGARPLFFL--DYLACGKLEPEKAARLVEGVAAGCREAGCAL 136 AG V + NDI GARP + + + G E A+ L + V A E G + Sbjct: 65 --LAGWLAVHVAANDIAVTGARPRWEMLAVLMPPGSSEDSLASLLGDAVRAA-EEIGVEI 121 Query: 137 IGGETAEMPGFYPPGVYDIAGFAVGVVERDRVLDGKAVREGDALVGLASSGLHSNGFSLV 196 +GG T PG P I A G+ A R GD ++ + + + Sbjct: 122 VGGHTEAAPGVPRP---IIVAAAAGITCGGCTTPTSAARPGDLVLQVKPAAIEGTAI--- 175 Query: 197 RKLIPDWEAAFEGRPIGELLTEPTRIYVRPVLEVLEE-----RPGVIHGMAHITGGGFPE 251 + D+ R +GE R+ V ++EE GV+ M T GG Sbjct: 176 --IATDFADMLRSRGVGEDAIAGARMLASRV-SIVEEAIELAEAGVVRAMHDPTEGGVLG 232 Query: 252 NIPRMFKDDLTAV-IEEGSWPVPPIFRHLES-LGVAHEEMFRTFNMGIGFVLAVAPREAE 309 + M T + +EE V R + S LG+ + R + G + V P +A Sbjct: 233 GLVEMALASRTVIEVEEDKIIVGEATRIVASALGI---DPLRLISSGT-LLATVPPDKAG 288 Query: 310 TIIEVFGAKGVPAWRIGRV 328 V GV IGRV Sbjct: 289 EARYVLEELGVEYSFIGRV 307 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.142 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 400,539 Number of Sequences: 1700 Number of extensions: 20368 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 1 length of query: 338 length of database: 492,079 effective HSP length: 77 effective length of query: 261 effective length of database: 361,179 effective search space: 94267719 effective search space used: 94267719 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718937|ref|YP_003874469.1| hypothetical protein STHERM_c12550 [Spirochaeta thermophila DSM 6192] (214 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 235,317 Number of Sequences: 1700 Number of extensions: 11296 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 214 length of database: 492,079 effective HSP length: 73 effective length of query: 141 effective length of database: 367,979 effective search space: 51885039 effective search space used: 51885039 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718938|ref|YP_003874470.1| phosphoribosylamine--glycine ligase [Spirochaeta thermophila DSM 6192] (414 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 432,147 Number of Sequences: 1700 Number of extensions: 19854 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 414 length of database: 492,079 effective HSP length: 79 effective length of query: 335 effective length of database: 357,779 effective search space: 119855965 effective search space used: 119855965 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718939|ref|YP_003874471.1| glutamate synthase [Spirochaeta thermophila DSM 6192] (513 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601084|ref|NP_147610.1| glutamate synthase [Aeropyrum perni... 194 6e-51 gi|118431317|ref|NP_147693.2| thioredoxin reductase [Aeropyrum p... 54 7e-09 gi|14601420|ref|NP_147957.1| mercuric reductase [Aeropyrum perni... 44 9e-06 gi|118431550|ref|NP_148088.2| dihydrolipoyl dehydrogenase [Aerop... 42 5e-05 >gi|14601084|ref|NP_147610.1| glutamate synthase [Aeropyrum pernix K1] Length = 337 Score = 194 bits (492), Expect = 6e-51 Identities = 120/335 (35%), Positives = 183/335 (54%), Gaps = 11/335 (3%) Query: 175 VKPDSGKKVAIIGSGPAGLTAAVDLRREGHTVVIFEAFPKAGGVMVYGIPEFRLPKRLVE 234 + P +GK V+IIG+GPAGL AA LR GH VV+++ P+ GG+M++GIP+ R+PK + Sbjct: 9 IPPSTGKTVSIIGAGPAGLGAAGFLRCRGHEVVVYDMMPEPGGMMMFGIPDDRIPKDNIR 68 Query: 235 DEIRHLEDLGVEFVYDFLVGKTRTLTQLLEEDGFDVVFISAGAGLPKFMGIEGEDLVGVY 294 +R L + G + + VG+ +L +++ D V I+ G P+ +G GEDL V Sbjct: 69 KSVRELVEGGARIILNNKVGRDISLEDIIKAS--DAVLIATGTWKPRRLGAPGEDLPWVL 126 Query: 295 SANEYLTRTNLMKAYDRERADTPILPSRRVAVIGGGNVAMDAARMAL-----RVGAEEVI 349 A ++L ++ + A P + R + V+GGG A DA + L + G E+V+ Sbjct: 127 PAADWLVEVHMARYGYLPWAKVPKVGGR-ILVVGGGLTAADAVHVPLTYPEFKDGVEKVV 185 Query: 350 VIYRRTEKEMPARREEVIHAMEEGVEFRFLTNVKRIMGDGEGKVRAVECLSYRLGEPDAS 409 + YRRT P R+ E ++ G E LT +G KV V+ + L D S Sbjct: 186 LSYRRTRDYAPMRKNEFERLIKMGAEAWELTQPIAFYEEGGRKV--VKFVRMELKASD-S 242 Query: 410 GRPRPVPIEGSEHSIEVDTVIFALGSVPHPLIRKTMPEVAVSERGTIVVDEHLRTSHPRI 469 GRP+PVPIEGSE E D + A+G VP P + ++ GTI DE+ T+ + Sbjct: 243 GRPKPVPIEGSEFEAEFDWALLAIGEVPTPPFNNGCCGIELNPDGTIKTDENFMTTRKGV 302 Query: 470 FAGGDVVTGAATVIEAMGAGRKAARSIHLLLSGEL 504 FA GDV G + + +A+ +G AA+ +HL L+G+L Sbjct: 303 FASGDVRHGPSLIGKALKSGLDAAQKVHLYLTGQL 337 >gi|118431317|ref|NP_147693.2| thioredoxin reductase [Aeropyrum pernix K1] Length = 337 Score = 54.3 bits (129), Expect = 7e-09 Identities = 85/346 (24%), Positives = 137/346 (39%), Gaps = 76/346 (21%) Query: 185 IIGSGPAGLTAAVDLRREGHTVVI--------------FEAFPKAGGVMVYGIPEFRLPK 230 I+G+GPAGL+AA+ R + +I + +P GG+ Sbjct: 23 IVGAGPAGLSAAIYTTRFLMSTLIVSMDVGGQLNLTNWIDDYPGMGGLEA---------S 73 Query: 231 RLVEDEIRHLEDLGVEFVYDFLVGKTRTLTQLLEEDGFDVVFISAGAGLP---------- 280 +LVE H E G + V V +T+ +L +DG+ +V S G + Sbjct: 74 KLVESFKSHAEMFGAKIVTGVQV---KTVDRL--DDGWFLVRGSRGLEVKARTVILAVGS 128 Query: 281 --KFMGIEGE-DLVGVYSANEYLTRTNLMKAYDRERADTPILPSRRVAVIGGGNVAMDAA 337 + +G+ GE +L G + + L K D V V+GGG+ A++ A Sbjct: 129 RRRKLGVPGEAELAGRGVSYCSVCDAPLFKGKD------------AVVVVGGGDSALEGA 176 Query: 338 RMALRVGAEEVIVIYRRTEKEMPARREEVIHAMEEGVEFRFLTNVKRIMGDGEGKVRAVE 397 + + +V R+ + P EE + +EF + V I G +V +V Sbjct: 177 LLLSGYVGKVYLVHRRQGFRAKPFYVEEA--RKKPNIEFILDSIVTEIR--GRDRVESVV 232 Query: 398 CLSYRLGEPDASGRPRPVPIEGSEHSIEVDTVIFALGSVPHPLIRKTMPEVAVSERGTIV 457 + + G E + VD + +GS P + + + + G +V Sbjct: 233 VKN---------------KVTGEEKELRVDGIFIEIGSEPPKELFEAI-GLETDSMGNVV 276 Query: 458 VDEHLRTSHPRIFAGGDVVT---GAATVIEAMGAGRKAARSIHLLL 500 VDE +RTS P IFA GD + G V+ A G AA S + L Sbjct: 277 VDEWMRTSIPGIFAAGDCTSMWPGFRQVVTAAAMGAVAAYSAYTYL 322 >gi|14601420|ref|NP_147957.1| mercuric reductase [Aeropyrum pernix K1] Length = 461 Score = 43.9 bits (102), Expect = 9e-06 Identities = 80/338 (23%), Positives = 124/338 (36%), Gaps = 80/338 (23%) Query: 183 VAIIGSGPAGLTAAVDLRREGHTVVIFEAFPKAGGVMVYG-------------------- 222 + +IG G AG +A V G +V++ P G + +G Sbjct: 8 IIVIGGGAAGFSAVVAAAEGGASVLLVSEGPLGGTCVNFGCVPSKHVLYNLSTARKAGLK 67 Query: 223 --IPEFRLPKRLVEDEIRH------LEDLGVEFVYDFLVGKTRTLTQ-LLEEDGFDV--- 270 + E R V + +R L+ LGV D+L G+ R ++E DG +V Sbjct: 68 ISLSEALEGARKVSETLRKEKYESLLDSLGV----DYLRGRARFKAPGIVEADGREVRYR 123 Query: 271 ----VFISAGAGLPKFMGIEGEDLVGVYSANEYLTRTNLMKAYDRERADTPILPSRRVAV 326 + + A P G++ + G NE L + P VAV Sbjct: 124 KAAIIAVGARTWRPPIPGLKEAEKAGRILDNERLF------------GEGPPPDMESVAV 171 Query: 327 IGGGNVAMDAARMALRVGAEEVIV-----IYRRTEKEMPARREEVIHAMEEGVEFRFLTN 381 IGG ++AA++ R G + V++ + R E E + V+ +GVE R Sbjct: 172 IGGRAQGVEAAQIFARSGLKTVLLQRSGRLLPRDEPEAGVYMKRVLEG--DGVEVRTSAR 229 Query: 382 VKRIMGDGEGKVRAVECLSYRLGEPDASGRPRPVPIEGSEHSIEVDTVIFALGSVP-HPL 440 R+ VR + Y + A S+E + A G P Sbjct: 230 PLRV-----ESVRGAVRIDYETPQGPA--------------SVEASYIYLATGRKPVLDG 270 Query: 441 IRKTMPEVAVSERGTIVVDEHLRTSHPRIFAGGDVVTG 478 + V VS G IVV+E L S P ++A GD + G Sbjct: 271 LGLENVGVRVSSDGFIVVNEKLMAS-PGVYAAGDCIGG 307 >gi|118431550|ref|NP_148088.2| dihydrolipoyl dehydrogenase [Aeropyrum pernix K1] Length = 464 Score = 41.6 bits (96), Expect = 5e-05 Identities = 81/345 (23%), Positives = 136/345 (39%), Gaps = 61/345 (17%) Query: 183 VAIIGSGPAGLTAAVDLRREGHTVVIFEAFPKAGGVMVYG-IPEFRL--PKRLVEDEIRH 239 + ++G GP G AAV +EG V + E G YG IP L P LV R Sbjct: 6 LVVVGGGPGGYPAAVRAAQEGLNVALVEMDSLGGECTNYGCIPTKALLHPAGLVASLARL 65 Query: 240 LEDLG---------VEFVYDFLVGKTRTLTQLLEEDGFDVVFISAGAGLPKFMGIEGEDL 290 G +E+V + G + ++ LL+ G +VV A P + ++G Sbjct: 66 KFVKGSVDVDFKGLMEWVDSVVKGVSNGVSTLLKGYGVEVVKGRAKI-RPGVVEVDGSGS 124 Query: 291 VGVYSANEYLTRTNLMKAYDRERADTPILPSR----------RVAVIGGGNVAMDAARMA 340 +G YS T+ E + +R R+ ++GGG + ++ A Sbjct: 125 IG-YSKLVLALGTSPASIPGLEPDGEVVHNNRTILGLRRKPGRMLIVGGGYIGVEYATAM 183 Query: 341 LRVGAEEVIVIYRRTEKEMPARREEVIHAMEEGVEFRFLTNVKRIMGDG-----EGKVRA 395 R+G E + I ++ +P + + +E +R+ +G + KV A Sbjct: 184 ARLGVE--VTIVELLDRLLPNMQRDFSRVVE-----------RRLRAEGVKIHTKSKVEA 230 Query: 396 VECLS-YRLGEPDASGRPRPVPIEGSEHSIEVDTVIFALGSVPHP-LIRKTMPEVAVSER 453 VE Y + E G+ +E D ++ A+G P+ + V + + Sbjct: 231 VERRERYAVVEVSGVGK------------MEYDAILVAVGRRPNTGDVGLEKLGVKLDKA 278 Query: 454 GTIVVD-EHLRTSHPRIFAGGDV----VTGAATVIEAMGAGRKAA 493 G I VD L T P ++A GDV + ++A+ A +AA Sbjct: 279 GYIQVDGATLETGVPGVYASGDVTGPPLLAHRAFLQAVVAAERAA 323 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 566,753 Number of Sequences: 1700 Number of extensions: 28424 Number of successful extensions: 131 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 123 Number of HSP's gapped (non-prelim): 6 length of query: 513 length of database: 492,079 effective HSP length: 81 effective length of query: 432 effective length of database: 354,379 effective search space: 153091728 effective search space used: 153091728 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718940|ref|YP_003874472.1| hypothetical protein STHERM_c12580 [Spirochaeta thermophila DSM 6192] (283 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 266,758 Number of Sequences: 1700 Number of extensions: 10912 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 283 length of database: 492,079 effective HSP length: 76 effective length of query: 207 effective length of database: 362,879 effective search space: 75115953 effective search space used: 75115953 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718941|ref|YP_003874473.1| hypothetical protein STHERM_c12590 [Spirochaeta thermophila DSM 6192] (122 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.135 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,163 Number of Sequences: 1700 Number of extensions: 3714 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 122 length of database: 492,079 effective HSP length: 67 effective length of query: 55 effective length of database: 378,179 effective search space: 20799845 effective search space used: 20799845 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718942|ref|YP_003874474.1| leucyl/phenylalanyl-tRNA--protein transferase [Spirochaeta thermophila DSM 6192] (279 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 296,431 Number of Sequences: 1700 Number of extensions: 13027 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 279 length of database: 492,079 effective HSP length: 76 effective length of query: 203 effective length of database: 362,879 effective search space: 73664437 effective search space used: 73664437 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718943|ref|YP_003874475.1| ClpA-like protein [Spirochaeta thermophila DSM 6192] (758 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431492|ref|NP_147998.2| replication factor C large subunit... 47 2e-06 >gi|118431492|ref|NP_147998.2| replication factor C large subunit [Aeropyrum pernix K1] Length = 479 Score = 47.0 bits (110), Expect = 2e-06 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 22/113 (19%) Query: 465 QDEAVEAVVQAIKRARAGFRRPDKPVASFLFVGPTGVGKTELARSLADIMGVPLLRFDMS 524 QD+A + +V K G R+PDK A L GP GVGKT L ++A + ++ + S Sbjct: 27 QDQAKKILVPWFKAWLEG-RKPDKRAA--LLYGPPGVGKTSLVEAIASEFNLEMIELNAS 83 Query: 525 EYQEKHTVSRLLGSPPGYVGYEEGALLTDAVRKHP----HAVLLLDEIEKAHP 573 +Y+ + + R++G+ A RK V+LLDE++ +P Sbjct: 84 DYRRRSDIERIVGA---------------ASRKRSMFKRGVVILLDEVDGINP 121 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 688,673 Number of Sequences: 1700 Number of extensions: 29742 Number of successful extensions: 157 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 156 Number of HSP's gapped (non-prelim): 2 length of query: 758 length of database: 492,079 effective HSP length: 84 effective length of query: 674 effective length of database: 349,279 effective search space: 235414046 effective search space used: 235414046 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718944|ref|YP_003874476.1| ATP-dependent Clp protease adaptor protein clpS [Spirochaeta thermophila DSM 6192] (134 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.136 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 109,882 Number of Sequences: 1700 Number of extensions: 3434 Number of successful extensions: 7 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 134 length of database: 492,079 effective HSP length: 68 effective length of query: 66 effective length of database: 376,479 effective search space: 24847614 effective search space used: 24847614 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718945|ref|YP_003874477.1| tripartite motif-containing protein 71 [Spirochaeta thermophila DSM 6192] (669 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 723,519 Number of Sequences: 1700 Number of extensions: 35627 Number of successful extensions: 100 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100 Number of HSP's gapped (non-prelim): 0 length of query: 669 length of database: 492,079 effective HSP length: 83 effective length of query: 586 effective length of database: 350,979 effective search space: 205673694 effective search space used: 205673694 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718946|ref|YP_003874478.1| hypothetical protein STHERM_c12640 [Spirochaeta thermophila DSM 6192] (225 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.133 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 202,496 Number of Sequences: 1700 Number of extensions: 7582 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 225 length of database: 492,079 effective HSP length: 74 effective length of query: 151 effective length of database: 366,279 effective search space: 55308129 effective search space used: 55308129 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718947|ref|YP_003874479.1| 5'-nucleotidase [Spirochaeta thermophila DSM 6192] (252 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431205|ref|NP_147506.2| 5'(3')-nucleotidase SurE [Aeropyru... 64 4e-12 >gi|118431205|ref|NP_147506.2| 5'(3')-nucleotidase SurE [Aeropyrum pernix K1] Length = 267 Score = 63.9 bits (154), Expect = 4e-12 Identities = 49/129 (37%), Positives = 65/129 (50%), Gaps = 5/129 (3%) Query: 1 MRVLLTNDDGIESPGLWALHEALKDR-YEVVVMAPEQEMSGTSQTITLRTPIRV---RER 56 ++ ++TNDDG+ S L AL E+L R ++VVV AP SG S++I RV R Sbjct: 2 LKAIVTNDDGVHSRSLRALAESLASRGWDVVVAAPLGNWSGYSKSIGRFRGNRVYRFESR 61 Query: 57 APGIYTCGGFPADCVVVACMSPETRPDVVVSGINPGPNLGT-DILYSGTXXXXXXXXLMD 115 +T PA V A PD+VVSGIN GPNLG D SGT L Sbjct: 62 GVRFFTGDMPPAALVGTAIDIAGFEPDIVVSGINYGPNLGIYDFFSSGTIGGALEAALRG 121 Query: 116 LPALAVSLA 124 ++++S A Sbjct: 122 FKSVSISSA 130 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 255,543 Number of Sequences: 1700 Number of extensions: 10447 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 1 length of query: 252 length of database: 492,079 effective HSP length: 75 effective length of query: 177 effective length of database: 364,579 effective search space: 64530483 effective search space used: 64530483 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718948|ref|YP_003874480.1| hypothetical protein STHERM_c12660 [Spirochaeta thermophila DSM 6192] (381 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602065|ref|NP_148611.1| mevalonate kinase [Aeropyrum pernix... 53 1e-08 >gi|14602065|ref|NP_148611.1| mevalonate kinase [Aeropyrum pernix K1] Length = 324 Score = 53.1 bits (126), Expect = 1e-08 Identities = 82/355 (23%), Positives = 135/355 (38%), Gaps = 51/355 (14%) Query: 21 SAPGVVSLLGEHTEEHEGRAIQFAASHRVDVAISRRKDSSLRFYSASLRERKKTSIPNLK 80 SAPG V ++GEH AI A R+ V + R +S+ R +P Sbjct: 8 SAPGKVIIVGEHFVVRGSLAIVAAIGRRLRVTV--RSGGKGIVLESSMLGRHSAPLPG-- 63 Query: 81 YRKEDRWANYLKGFYAQLLDWGAPPHGL---EVTIYSTVKPQIGLASSSAMELAFAVALA 137 + + L+ + A L A + + + + S + P+ GL SS+A +A+A++ + Sbjct: 64 QGAAAKVSPVLEPYIAVLRSLAARGYSVVPHTILVESGIPPRAGLGSSAASMVAYALSYS 123 Query: 138 TLSGVHISEAQLIDLIQAGEEEYLGTVPRRVDFLTMFHAKRDHVVMVDTRTWETEVLPLG 197 + G +S L + GE+ G P VD A R V+ ++ P G Sbjct: 124 AMHGDPLSAEDLYSVAMEGEKIAHGK-PSGVDVTI---AVRGGVLAYRRGENPVDIRP-G 178 Query: 198 FPGTTFLLTDANVPEHILTXXXXXXXXXXXXXLTDFLREQGRRSLRDF--SVEELRSSMG 255 G T L+ D V R RD V + ++G Sbjct: 179 LTGVTLLVADTGV----------------------------ERRTRDVVEHVLSIADALG 210 Query: 256 RIPEHVRRKALHVVEEFLRVEEARHALQRRDKVLFGRVLSRSHESLRDNYEVSCPEFDWI 315 ++ R A L EA HA+++ D G +++ + + L + S E + + Sbjct: 211 EASTYIYRAA------DLIAREALHAIEKGDAERLGLIMNAA-QGLLSSLGASSLEIETL 263 Query: 316 AKRCFEVPDVYGSRLVGTGLRGCIVTFLEERAVSLYRERVEEYERIFGFTADVYE 370 R G++L G G GC++ +E V E V E FTA + E Sbjct: 264 VYR-MRSAGALGAKLTGAGWGGCVIGLFKEGEVERGLESVVE-SSSQAFTASIAE 316 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 368,100 Number of Sequences: 1700 Number of extensions: 15410 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 1 length of query: 381 length of database: 492,079 effective HSP length: 78 effective length of query: 303 effective length of database: 359,479 effective search space: 108922137 effective search space used: 108922137 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718949|ref|YP_003874481.1| MTA/SAH nucleosidase [Spirochaeta thermophila DSM 6192] (234 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 250,375 Number of Sequences: 1700 Number of extensions: 11382 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 234 length of database: 492,079 effective HSP length: 74 effective length of query: 160 effective length of database: 366,279 effective search space: 58604640 effective search space used: 58604640 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718950|ref|YP_003874482.1| lysyl-tRNA synthetase [Spirochaeta thermophila DSM 6192] (350 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.138 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 338,836 Number of Sequences: 1700 Number of extensions: 14674 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 350 length of database: 492,079 effective HSP length: 78 effective length of query: 272 effective length of database: 359,479 effective search space: 97778288 effective search space used: 97778288 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718951|ref|YP_003874483.1| hypothetical protein STHERM_c12690 [Spirochaeta thermophila DSM 6192] (187 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431724|ref|NP_148373.2| translation initiation factor IF-5... 46 7e-07 >gi|118431724|ref|NP_148373.2| translation initiation factor IF-5A [Aeropyrum pernix K1] Length = 139 Score = 45.8 bits (107), Expect = 7e-07 Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 1/102 (0%) Query: 5 GSIDKGMYLLYKGEPYFVAEREFVNPGK-GSAFVRLKLKHVKSGLVLRETIKTNDSVEEA 63 G + KG Y++ GEP + E GK GSA + V SG + V+ Sbjct: 9 GDLKKGSYIVIDGEPCRIVEMSRAKTGKHGSAKAHVVAICVFSGQKKSLVAPVDTRVQIP 68 Query: 64 NIEERRAQYLYSDGTSFHFMDNETYEQFEIPMEGHEEKGHYL 105 IE+R Q L G MD ETY+ FE+ G E+ L Sbjct: 69 VIEKRLGQVLADMGDMVQIMDLETYDTFEVEKPGGNEEEEQL 110 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 191,771 Number of Sequences: 1700 Number of extensions: 8176 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 1 length of query: 187 length of database: 492,079 effective HSP length: 72 effective length of query: 115 effective length of database: 369,679 effective search space: 42513085 effective search space used: 42513085 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718952|ref|YP_003874484.1| cysteine synthase A [Spirochaeta thermophila DSM 6192] (318 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431373|ref|NP_147802.2| cystathionine beta-synthase [Aerop... 200 4e-53 gi|14601502|ref|NP_148041.1| cysteine synthase [Aeropyrum pernix... 103 6e-24 gi|118431476|ref|NP_147974.2| threonine synthase [Aeropyrum pern... 69 2e-13 gi|14601969|ref|NP_148514.1| threonine synthase [Aeropyrum perni... 59 1e-10 gi|118431480|ref|NP_147982.2| threonine dehydratase [Aeropyrum p... 54 4e-09 >gi|118431373|ref|NP_147802.2| cystathionine beta-synthase [Aeropyrum pernix K1] Length = 389 Score = 200 bits (508), Expect = 4e-53 Identities = 126/353 (35%), Positives = 185/353 (52%), Gaps = 59/353 (16%) Query: 19 ITALTGNTPLYRLSRISEE---EGNTLLAKLEWYNPTGSVKDRMVAHILGQAASSGRIKP 75 I L G TPL RL R+ EG L KLE +NP GSVKDR+ ++L A S G ++ Sbjct: 13 ILDLVGGTPLLRLGRVERFFRLEGVELYGKLEMFNPGGSVKDRIGLYMLMDARSRGLVEE 72 Query: 76 GDTIIEPTSGNTGVSLAAFGAARGYRVILVMPDTAPVERRHMLAALGAHLELTPAEQG-- 133 G IIEPT+GNTGV LA G+R++ VMP VE+ +L A GA++ TP Sbjct: 73 GAVIIEPTAGNTGVGLALAAIHYGFRLVAVMPSKMSVEKELILRAYGAYVIRTPTAVPPE 132 Query: 134 ---------------------------MRGAIERAEELVQE----------------IPD 150 +R +E+ + LV+E P Sbjct: 133 SPLSYYRVAEAVRNLLWMIGGRPGGGEVRKVVEKVQTLVREERVEDLRSILEASVEPTPY 192 Query: 151 SYMLSQFINPGNPEAHYQTTGPEIWYDTEGQVDILVXXXXXXXXXXXXXRFLKKKKPECR 210 +Y+ +Q+ NP NP AH +TTG EIW T G+VD++ R+LK+ KP R Sbjct: 193 AYIPNQYSNPANPRAHEETTGREIWMQTGGRVDVVYAGMGTRGTITGVARYLKRAKPSVR 252 Query: 211 VIGVEPAES--AVIHGG----EPGRHG----ISGIGAGFVPKTLDLKVVDQVVTVSSEEA 260 ++GV+P S +++ G E +H + GIG F+P T+DL +VD+VV V+ ++A Sbjct: 253 IVGVDPEGSIYSLVKKGMSPHEAAKHARPYKVEGIGEDFIPSTIDLSLVDEVVVVTDQQA 312 Query: 261 KEGAKRIARVEGLLVGISSGAALMGALAYLSSADIKGAQVVIIFPDSGIPYLS 313 A+ +AR+EG+L G SSGAAL A+ ++ + ++G VVI+ PD+G Y++ Sbjct: 313 FSMARMLARLEGVLAGGSSGAALYAAVKHIKTRRVRGVAVVIL-PDTGRNYIN 364 >gi|14601502|ref|NP_148041.1| cysteine synthase [Aeropyrum pernix K1] Length = 389 Score = 103 bits (257), Expect = 6e-24 Identities = 85/293 (29%), Positives = 133/293 (45%), Gaps = 18/293 (6%) Query: 26 TPLYRLSRISEEEGNTLLAKLEWYNPTG-SVKDRMVAHILGQAASSGRIKPGDTIIEPTS 84 TPL R SR+ G + KLEWYNP SVKDR I+ + S R++ G + + TS Sbjct: 97 TPLVR-SRLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRL--SRRVEKGSLVADATS 153 Query: 85 GNTGVSLAAFGAARGYRVILVMPDTAPVERRHMLAALGAHLELTPAEQGMRGAIERAEEL 144 N GV+L+A GYR + +P A + + LGA + + P + R + Sbjct: 154 SNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRV--M 211 Query: 145 VQEIPDSYM-LSQFINPGNPEAHYQTTGPEIWYDTE-GQVDI--LVXXXXXXXXXXXXXR 200 + ++ ++QF N N EAH + T EI+ + G + + + Sbjct: 212 KDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAF 271 Query: 201 FLKKKKPECRVIGVEPAESAVIHGGEPGRHGISGIGAGFVPKTLDLKVVDQVVTVSSEEA 260 +L+ P R + V+PA+ I G G+ I + TL V+ EEA Sbjct: 272 YLQSVDPSIRAVLVQPAQGDSIPGIRRVETGMLWINMLDISYTL--------AEVTLEEA 323 Query: 261 KEGAKRIARVEGLLVGISSGAALMGALAYLSSADIKGAQVVIIFPDSGIPYLS 313 E +AR +GL++G S GAA+ + D++ V++ PD+G YLS Sbjct: 324 MEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYLS 376 >gi|118431476|ref|NP_147974.2| threonine synthase [Aeropyrum pernix K1] Length = 340 Score = 68.6 bits (166), Expect = 2e-13 Identities = 80/305 (26%), Positives = 128/305 (41%), Gaps = 38/305 (12%) Query: 24 GNTPLYRLSRISEEEGNTLLAKLEWYNPTGSVKDRMVAHILGQAASSGRIKPGDTIIEPT 83 G+TPL E G + AKLE+ NP+GS KDR V + L A+ G D ++ + Sbjct: 49 GSTPLV-------EAGEGVYAKLEYLNPSGSFKDRGVGYSLRMASLLGY----DCVVVDS 97 Query: 84 SGNTGVSLAAFGAARGYRVILVMPDTAPVERRHMLAALGAHL-ELTPAEQGMRGAIERAE 142 SGNTG+S A + A G + + +P A ++ ++ A GA L E E+ R A AE Sbjct: 98 SGNTGLSTALYSARLGLKARVYVPRGASPGKKALIRATGAELVEAESREEAARLAEAEAE 157 Query: 143 ELVQEIPDSYMLSQFINPGNP--EAHYQTTGPEIWYDTEGQVDILVXXXXXXXXXXXXXR 200 + +P NP ++ G E+ + G D+L R Sbjct: 158 KCF----------HVAHPTNPLFIEGVKSLGRELAGEAAGDTDVL-APVSSGTLLLGIYR 206 Query: 201 FLKKKKPECRVIGVEPAESAVIHGGEPGRHGISGIGAGFV-------PKTLD-----LKV 248 L++++ R++ V+ + + G P + G+ + P L+ ++ Sbjct: 207 GLEEERGRFRLVAVQSPAAYSLKGLVPELGWVGGVEGRLLDALLLARPPRLEEMARAVRE 266 Query: 249 VDQVVTVSSEEAKEGAKRIARVEGLLVGISSGAALMGALAYLSSADIKGAQVVIIFPDSG 308 V V + A GA R A G LV SS AA+ A L + +++ SG Sbjct: 267 SGGGVVVVGDGAIPGAVREAVQRGFLVEPSS-AAVFAAHEVLREKKWLSGRSLLVLTGSG 325 Query: 309 IPYLS 313 + Y S Sbjct: 326 LKYAS 330 >gi|14601969|ref|NP_148514.1| threonine synthase [Aeropyrum pernix K1] Length = 393 Score = 59.3 bits (142), Expect = 1e-10 Identities = 82/317 (25%), Positives = 138/317 (43%), Gaps = 38/317 (11%) Query: 19 ITALTGNTPLYRLSRISEEEGNTLLAKLEWYNPTGSVKDR-MVAHILGQAASSGRIKPGD 77 +T G+TPL +L +S G + KLE+ NPTGS KDR M + ++ S R+ Sbjct: 52 VTMGEGSTPLVKLENLSRAMGVEVYGKLEFLNPTGSFKDRGMTVGVSIASSFSYRL---- 107 Query: 78 TIIEPTSGNTGVSLAAFGAARGYRVILVMPDTAPVE-RRHMLAALGAHLELTPAEQGMRG 136 ++ ++GNT S+AA+ G ++++P + +AALGA + E Sbjct: 108 -VVAASTGNTAASMAAYARRAGLNPVILIPKGGIASGKLSQIAALGAW--VLEVEGSFDD 164 Query: 137 AIERAEELVQEIPDSYMLSQFINPGNPEAHYQTTGPEIWYDTEGQVDILVXXXXXXXXXX 196 A++ A ++ +Y L+ INP E +T EI D + ++V Sbjct: 165 ALDAARAAAEK-GLAYSLNS-INPYRLEGQ-KTIAFEILEDVDRVDHVVVPVGNAGNISA 221 Query: 197 XXXRF-------LKKKKPECRVIGVEPAESAVIHGG--------EPGRHG---ISGIGAG 238 F L +P R++GV+ ++ ++ E R+ S I G Sbjct: 222 IWKGFKEAGLLGLPSMRP--RMVGVQAEGASPLYRAWVEKMDSVERVRNPSTIASAIRIG 279 Query: 239 F-VPKTLDLKVVDQ----VVTVSSEEAKEGAKRIARVEGLLVGISSGAALMGALAYLSSA 293 V L V + +++VS E + A +A EG+LV +S A+L G + + Sbjct: 280 NPVNAAKALAAVRESDGLIISVSDAEILKAAATLAENEGMLVEPASAASLAGLIKLRNQG 339 Query: 294 DI-KGAQVVIIFPDSGI 309 I G+ VV+I G+ Sbjct: 340 IIASGSSVVLILTGHGL 356 >gi|118431480|ref|NP_147982.2| threonine dehydratase [Aeropyrum pernix K1] Length = 411 Score = 54.3 bits (129), Expect = 4e-09 Identities = 73/294 (24%), Positives = 123/294 (41%), Gaps = 30/294 (10%) Query: 26 TPLYRLSRISEEEGNTLLAKLEWYNPTGSVKDRMVAHILGQAASSGRIKPGDTIIEPTSG 85 TPL + + +S G + KLE TGS K R LG+A G + + ++ ++G Sbjct: 32 TPLDKSTTLSRITGAEVYLKLENLQKTGSFKVRGPLFKLGRALEKGSV---EGVVAASAG 88 Query: 86 NTGVSLAAFGAARGYRVILVMPDTAPVERRHMLAALGAHLELTPAEQGMRGAIERAEELV 145 N +A + G + ++VMP+ AP + + GA E+ + + A + AE++ Sbjct: 89 NHAQGVAYAASFYGLKSVIVMPELAPPAKVKATRSYGA--EVVLHGRVVDEAFKLAEKIA 146 Query: 146 QEIPDSYMLSQFINPGNPEAHYQTTGPEIW--YDTEGQVDILVXXXXXXXXXXXXXRFLK 203 +E YML ++P + G W Y+ G+ D ++ ++ Sbjct: 147 EE--RGYML---VHPFDDPEIMAGNGTIAWEAYEQGGKFDTVIVPVGGGGLISGVVSVVR 201 Query: 204 KKKPECRVIGVEPAESA-----VIHGGEPGRHGIS-GIGAGFVPK-------TLDLKVVD 250 K P +VIGVE AE+A G+P ++ + G V K + +VD Sbjct: 202 KLMPGVKVIGVE-AEAAPKFVESFKEGKPIEVEVTHSLADGLVTKKPGRLTYPIVKHLVD 260 Query: 251 QVVTVSSEEAKEGAKRIARVEGLLVGISSGAALMGALAYLSS-ADIKGAQVVII 303 +VV V E + +L + GA G A L+ KG +VI+ Sbjct: 261 KVVAVDEHEIASAMYLLLERSKIL---AEGAGAAGVAALLARVVKPKGKTLVIV 311 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 330,181 Number of Sequences: 1700 Number of extensions: 14819 Number of successful extensions: 66 Number of sequences better than 1.0e-04: 5 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 6 length of query: 318 length of database: 492,079 effective HSP length: 77 effective length of query: 241 effective length of database: 361,179 effective search space: 87044139 effective search space used: 87044139 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718953|ref|YP_003874485.1| HTH-type transcriptional regulator IscR [Spirochaeta thermophila DSM 6192] (155 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 152,593 Number of Sequences: 1700 Number of extensions: 6666 Number of successful extensions: 27 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 0 length of query: 155 length of database: 492,079 effective HSP length: 70 effective length of query: 85 effective length of database: 373,079 effective search space: 31711715 effective search space used: 31711715 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718954|ref|YP_003874486.1| hypothetical protein STHERM_c12720 [Spirochaeta thermophila DSM 6192] (376 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.140 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 436,665 Number of Sequences: 1700 Number of extensions: 22214 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 0 length of query: 376 length of database: 492,079 effective HSP length: 78 effective length of query: 298 effective length of database: 359,479 effective search space: 107124742 effective search space used: 107124742 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718955|ref|YP_003874487.1| hypothetical protein STHERM_c12730 [Spirochaeta thermophila DSM 6192] (385 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431459|ref|NP_147944.2| small conductance mechanosensitive... 91 6e-20 gi|118431624|ref|NP_148223.2| small conductance mechanosensitive... 65 3e-12 >gi|118431459|ref|NP_147944.2| small conductance mechanosensitive channel MscS [Aeropyrum pernix K1] Length = 280 Score = 90.5 bits (223), Expect = 6e-20 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 4/207 (1%) Query: 171 YLTIVLTSLIGLSFIGINXXXXXXXXXXXXXXXXXXXQSVVANFFAGLIIISTRPIKEGD 230 Y+ + LT++ L +G+ Q + +NFF+GL + + + GD Sbjct: 67 YMVLFLTAVAALQALGVELTALLVAGGFAGLVLSLALQPLFSNFFSGLYLYGEKSLVIGD 126 Query: 231 RILVGDIEGTVHEIRMLTTVVNTLFNESIILPNSKIVQEAVYNFSHYD-RRVVLRNPVQV 289 I +G G V EI ++T V TL E + +PNS+I+ + + N+S RR+ + + Sbjct: 127 LISIGGFIGRVVEISTMSTRVRTLDGEVVRIPNSRIINDYMVNYSKSAVRRLTFK--ASI 184 Query: 290 SYKSDVRLVEKVLIEVGERCPYRVKSRPPVVYLNSFDDSGITFTLYTWISNVDEKYPARS 349 +Y+ D+ + E +K P VY + DSG+ + W+ D Y A Sbjct: 185 AYREDIGKAINTISNALESIYLVLKDPSPEVYASELGDSGVIIDVKVWVP-TDYWYQASM 243 Query: 350 WINFAIWEAFKAHGIEIPYPQRDVYIR 376 + + EA GIEIP+ Q DV+ R Sbjct: 244 QVIKTVREALAREGIEIPFTQVDVWFR 270 >gi|118431624|ref|NP_148223.2| small conductance mechanosensitive channel MscS [Aeropyrum pernix K1] Length = 286 Score = 65.1 bits (157), Expect = 3e-12 Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 16/213 (7%) Query: 171 YLTIVLTSLIGLSFIGINXXXXXXXXXXXXXXXXXXXQSVVANFFAGLIIISTRPIKEGD 230 Y + LT + L+ +GI+ Q+V +N AG+ + RP K GD Sbjct: 66 YTILFLTGVAALAQLGIDISVFLVAGGIVGIALGIASQTVASNLIAGVFLYLERPFKVGD 125 Query: 231 RILVGDIEGTVHEIRMLTT-------VVNTLFNESIILPNSKIVQEAVYNFSHYDRRVVL 283 ++VG I G V++I +L++ V+ + NE++ N ++ +++ RRV Sbjct: 126 PVIVGSIGGVVYDISILSSKILKWDGVMARIPNEALFKSNVDVLNKSL------ARRVEY 179 Query: 284 RNPVQVSYKSDVRLVEKVLIEVGERCPYRVKSRPPVVYLNSFDDSGITFTLYTWISNVDE 343 R PV+ + SD ++ + + P + P V++++ + G + W + D+ Sbjct: 180 RIPVKET--SDYSKAAEIALNAIQEEPLALAEPEPQVFVDNISERGAELVVRFWAPS-DQ 236 Query: 344 KYPARSWINFAIWEAFKAHGIEIPYPQRDVYIR 376 + A+ + I + G+EI PQR V +R Sbjct: 237 WFNAKIKMLSIIVKRLLDAGVEITPPQRLVSLR 269 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 338,610 Number of Sequences: 1700 Number of extensions: 12960 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 2 length of query: 385 length of database: 492,079 effective HSP length: 78 effective length of query: 307 effective length of database: 359,479 effective search space: 110360053 effective search space used: 110360053 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718956|ref|YP_003874488.1| hypothetical protein STHERM_c12740 [Spirochaeta thermophila DSM 6192] (464 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431841|ref|NP_148558.2| orotate phosphoribosyltransferase ... 94 7e-21 gi|14602012|ref|NP_148557.1| orotidine 5'-phosphate decarboxylas... 60 1e-10 >gi|118431841|ref|NP_148558.2| orotate phosphoribosyltransferase [Aeropyrum pernix K1] Length = 186 Score = 94.0 bits (232), Expect = 7e-21 Identities = 62/174 (35%), Positives = 90/174 (51%), Gaps = 3/174 (1%) Query: 269 LKERVLKGLVEAGCFKVGDFVLKSGKRSPFYVDLRRVPSFPELFPKVISAYASLARR--L 326 L E + K L + G GDFVL SG+RS Y+D+RR+ + + + + Sbjct: 6 LAEVLAKVLKKRGAVLRGDFVLSSGRRSSVYIDMRRLLGDESSYSVALDLLLEVGGQDLA 65 Query: 327 EFERIAGIPTAGLPIAAGLALHLGKPLIYPRLDAKGYGTGNRVEGEWRPGERVLLVDDLI 386 + G+ T GLP AA LAL L KPL Y R + KG+GT ++VEG+ P RV++VDD+ Sbjct: 66 RSSAVIGVATGGLPWAAMLALRLSKPLGYVRPERKGHGTLSQVEGD-PPKGRVVVVDDVA 124 Query: 387 TTGGSKIEAATVLRDAGXXXXXXXXXXXRGARGHKEMEEAGIRLHAYAHIREFL 440 TTG S ++ VLR G RG + + G+RL + A ++ L Sbjct: 125 TTGTSIAKSIEVLRSNGYTVGTALVLVDRGEGAGELLARMGVRLVSVATLKTIL 178 >gi|14602012|ref|NP_148557.1| orotidine 5'-phosphate decarboxylase [Aeropyrum pernix K1] Length = 244 Score = 60.1 bits (144), Expect = 1e-10 Identities = 57/185 (30%), Positives = 79/185 (42%), Gaps = 18/185 (9%) Query: 69 GMRALKDTVELIHERTSALVVLDVKRGDIGXXXXXXXXXXFEWLGVDAVTLAPYMGEDAA 128 G AL + L + L VLD+K DIG G DA ++G + Sbjct: 53 GSEALAEAARLC--KGGGLRVLDLKLADIGYIMRLAAESLSR--GFDAAIAHAFVGYEGG 108 Query: 129 RPFL--AYEGKGVFVLCRTSNPSAGRFQELEVTGEPLFLRVAEEAVRWDGEVGLVVAGNN 186 L +G G ++ S G + L+ + L L VA W G+V Sbjct: 109 LVELKKTLDGLGARLVLVVSMSHPGSREVLDPCLDKL-LAVARRVEPW----GVVAPATR 163 Query: 187 PEALSLLRERHPDVWFLAPGVGAQGGSAGDAV-RAGMDAEGLGVLVVVARGIARAEDPGE 245 PE ++ +RE P L+PGVGAQGG GDA+ G D E +V R +A + DP Sbjct: 164 PEVVARVRETLPTTVILSPGVGAQGGKPGDAICLGGADYE------IVGRMVAGSPDPVS 217 Query: 246 AAKGV 250 A +GV Sbjct: 218 ALRGV 222 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 504,197 Number of Sequences: 1700 Number of extensions: 24313 Number of successful extensions: 85 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81 Number of HSP's gapped (non-prelim): 2 length of query: 464 length of database: 492,079 effective HSP length: 80 effective length of query: 384 effective length of database: 356,079 effective search space: 136734336 effective search space used: 136734336 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718957|ref|YP_003874489.1| hypothetical protein STHERM_c12750 [Spirochaeta thermophila DSM 6192] (298 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 335,877 Number of Sequences: 1700 Number of extensions: 15750 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 298 length of database: 492,079 effective HSP length: 76 effective length of query: 222 effective length of database: 362,879 effective search space: 80559138 effective search space used: 80559138 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718958|ref|YP_003874490.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (254 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431588|ref|NP_148161.2| NAD-dependent deacetylase [Aeropyr... 195 1e-51 >gi|118431588|ref|NP_148161.2| NAD-dependent deacetylase [Aeropyrum pernix K1] Length = 245 Score = 195 bits (495), Expect = 1e-51 Identities = 108/242 (44%), Positives = 150/242 (61%), Gaps = 11/242 (4%) Query: 16 LIKASSYTVAFTGAGISHESGVPTFRGPDGLWSRYDPRVLEI-DFFFRHPKESWAAIR-- 72 ++ S + VAFTGAGIS ESG+PTFRG DGLWSR+DPR L + F R P+ W Sbjct: 10 ILANSRFAVAFTGAGISAESGIPTFRGKDGLWSRFDPRDLATPEAFNRDPRLVWEWYSWR 69 Query: 73 -EMFFSADHPPEPNPAHLLLARMEAQGLLHAVITMNIDNLHHRAGSRNVIEYHGNTREAV 131 E +A +PN AH LLAR+E G+L AVIT N+D LH RAGSR V+E HGN A Sbjct: 70 IERVLAA----KPNKAHRLLARLEDSGVLKAVITQNVDGLHRRAGSRRVLELHGNVLRAR 125 Query: 132 CTLCRRRYTAREVLGMEAPPTC-SCGGLIKPDFVFFGEAIPAEAYTRSVDEARRAQCLLV 190 CT C + RE PP+C CGG+++PD V+FGE + + ARR+ +++ Sbjct: 126 CTRCGSKLEWRE-KPSNLPPSCPRCGGVLRPDVVWFGEPLDTSLLEEAFGLARRSDVMII 184 Query: 191 VGTAGVVYPAASIPHIAERAGAHIIEINPEPSSYTESITEVYLPLKAAEAAILLARHLEI 250 +GT+G V PA +P A+ +GA +I +NPEP+ Y+ + ++ L ++A E A L+R + I Sbjct: 185 IGTSGAVDPAGLLPLAAKESGATLINVNPEPNRYS-GVADIELRMRAVEFAERLSRAMGI 243 Query: 251 DL 252 D+ Sbjct: 244 DI 245 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 277,555 Number of Sequences: 1700 Number of extensions: 12912 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 1 length of query: 254 length of database: 492,079 effective HSP length: 75 effective length of query: 179 effective length of database: 364,579 effective search space: 65259641 effective search space used: 65259641 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718959|ref|YP_003874491.1| hypothetical protein STHERM_c12770 [Spirochaeta thermophila DSM 6192] (331 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.140 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 260,473 Number of Sequences: 1700 Number of extensions: 8692 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 331 length of database: 492,079 effective HSP length: 77 effective length of query: 254 effective length of database: 361,179 effective search space: 91739466 effective search space used: 91739466 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718960|ref|YP_003874492.1| hypothetical protein STHERM_c12780 [Spirochaeta thermophila DSM 6192] (341 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.144 0.475 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 327,454 Number of Sequences: 1700 Number of extensions: 12555 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 341 length of database: 492,079 effective HSP length: 77 effective length of query: 264 effective length of database: 361,179 effective search space: 95351256 effective search space used: 95351256 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718961|ref|YP_003874493.1| hypothetical protein STHERM_c12790 [Spirochaeta thermophila DSM 6192] (427 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 439,784 Number of Sequences: 1700 Number of extensions: 19399 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 0 length of query: 427 length of database: 492,079 effective HSP length: 79 effective length of query: 348 effective length of database: 357,779 effective search space: 124507092 effective search space used: 124507092 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718962|ref|YP_003874494.1| hypothetical protein STHERM_c12800 [Spirochaeta thermophila DSM 6192] (587 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 633,619 Number of Sequences: 1700 Number of extensions: 29447 Number of successful extensions: 76 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76 Number of HSP's gapped (non-prelim): 0 length of query: 587 length of database: 492,079 effective HSP length: 82 effective length of query: 505 effective length of database: 352,679 effective search space: 178102895 effective search space used: 178102895 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718963|ref|YP_003874495.1| hypothetical protein STHERM_c12810 [Spirochaeta thermophila DSM 6192] (143 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 113,689 Number of Sequences: 1700 Number of extensions: 3543 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 143 length of database: 492,079 effective HSP length: 69 effective length of query: 74 effective length of database: 374,779 effective search space: 27733646 effective search space used: 27733646 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718964|ref|YP_003874496.1| hypothetical protein STHERM_c12820 [Spirochaeta thermophila DSM 6192] (289 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431940|ref|NP_148720.2| molybdopterin oxidoreductase, iron... 43 8e-06 gi|118430995|ref|NP_147145.2| ferredoxin [Aeropyrum pernix K1] 40 5e-05 >gi|118431940|ref|NP_148720.2| molybdopterin oxidoreductase, iron-sulfur binding subunit [Aeropyrum pernix K1] Length = 233 Score = 43.1 bits (100), Expect = 8e-06 Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 9/101 (8%) Query: 171 VDEEKCTACGVCVEVCPRNLFELTPRGKRGRRVWINCRNTEKGALARKNCAVACIGCGK- 229 +D +KC C CV C P G R WI E G C C Sbjct: 58 IDVDKCYGCYACVVACAHE--NNVPIGVY--RTWIERYVKEDGTPVY--VPKQCNHCDNP 111 Query: 230 -CVKVCETVTQAITLEHNLAYIDPVKCIACGKCVAECPTGA 269 CV VC + E + +D CI CG C+ CP GA Sbjct: 112 SCVDVCPVKATYVN-EDGIVLVDDDLCIGCGACIQNCPYGA 151 >gi|118430995|ref|NP_147145.2| ferredoxin [Aeropyrum pernix K1] Length = 110 Score = 40.4 bits (93), Expect = 5e-05 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Query: 171 VDEEKCTACGVCVEVCPRNLFELTPRGKRGRRVWINCRNTEKGALARKNCAVACI 225 +D++ C +CG C+EVCP + E + R +W C++ ++C V CI Sbjct: 12 IDQDTCISCGACIEVCPYDALEF-DENMKARLIWEKCQDDFS---CIESCPVNCI 62 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.139 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 297,839 Number of Sequences: 1700 Number of extensions: 13698 Number of successful extensions: 82 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 72 Number of HSP's gapped (non-prelim): 9 length of query: 289 length of database: 492,079 effective HSP length: 76 effective length of query: 213 effective length of database: 362,879 effective search space: 77293227 effective search space used: 77293227 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718965|ref|YP_003874497.1| transporter [Spirochaeta thermophila DSM 6192] (444 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 478,036 Number of Sequences: 1700 Number of extensions: 23098 Number of successful extensions: 84 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84 Number of HSP's gapped (non-prelim): 0 length of query: 444 length of database: 492,079 effective HSP length: 80 effective length of query: 364 effective length of database: 356,079 effective search space: 129612756 effective search space used: 129612756 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718966|ref|YP_003874498.1| transporter [Spirochaeta thermophila DSM 6192] (343 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.141 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 299,684 Number of Sequences: 1700 Number of extensions: 11289 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 343 length of database: 492,079 effective HSP length: 78 effective length of query: 265 effective length of database: 359,479 effective search space: 95261935 effective search space used: 95261935 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718967|ref|YP_003874499.1| transporter [Spirochaeta thermophila DSM 6192] (201 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 178,592 Number of Sequences: 1700 Number of extensions: 7771 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 201 length of database: 492,079 effective HSP length: 72 effective length of query: 129 effective length of database: 369,679 effective search space: 47688591 effective search space used: 47688591 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718968|ref|YP_003874500.1| transporter [Spirochaeta thermophila DSM 6192] (199 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.144 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 182,681 Number of Sequences: 1700 Number of extensions: 7677 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 199 length of database: 492,079 effective HSP length: 72 effective length of query: 127 effective length of database: 369,679 effective search space: 46949233 effective search space used: 46949233 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718969|ref|YP_003874501.1| transporter [Spirochaeta thermophila DSM 6192] (190 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.333 0.147 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 151,383 Number of Sequences: 1700 Number of extensions: 5164 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 0 length of query: 190 length of database: 492,079 effective HSP length: 72 effective length of query: 118 effective length of database: 369,679 effective search space: 43622122 effective search space used: 43622122 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718970|ref|YP_003874502.1| DNA repair protein RadC [Spirochaeta thermophila DSM 6192] (218 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 224,103 Number of Sequences: 1700 Number of extensions: 9405 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 218 length of database: 492,079 effective HSP length: 73 effective length of query: 145 effective length of database: 367,979 effective search space: 53356955 effective search space used: 53356955 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718971|ref|YP_003874503.1| O-acetylhomoserine/O-acetylserine sulfhydrylase [Spirochaeta thermophila DSM 6192] (426 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601268|ref|NP_147803.1| cystathionine gamma-synthase [Aerop... 221 2e-59 gi|14601818|ref|NP_148359.1| cystathionine gamma-synthase [Aerop... 135 2e-33 gi|118431794|ref|NP_148487.2| aspartate aminotransferase [Aeropy... 44 6e-06 gi|14602153|ref|NP_148701.1| aspartate aminotransferase [Aeropyr... 41 5e-05 >gi|14601268|ref|NP_147803.1| cystathionine gamma-synthase [Aeropyrum pernix K1] Length = 384 Score = 221 bits (564), Expect = 2e-59 Identities = 136/402 (33%), Positives = 204/402 (50%), Gaps = 45/402 (11%) Query: 5 TLAIHGGL-PRDIDPPSRAYPVHRTTSYLFRDADHAANLFALKELGYIYTRLHNPTQDVL 63 T A+H G PR+ +P+H + +Y R A E GY+Y+R NPT+D L Sbjct: 6 TKAVHAGEDPRETLHGDVVHPIHLSVTYWKRSVAEA-------EEGYVYSRTSNPTRDAL 58 Query: 64 EQRXXXXXXXXXXXXXXXXXXXIFYSIINLATAGTEIVSSKYLYGGTFTMFNNILPDYGI 123 E++ I+ L G IV+ LYGGT +F ++ +GI Sbjct: 59 EKKLAALENARYALAFSSGLAAEATVILALLREGDHIVAFDDLYGGTKRLFQRVMARFGI 118 Query: 124 KVRFVDPYDLEEVEAAINEKTRAVFVETIGNPTLDVPDFEAIAEIAHRHGLPLIADSTFT 183 KV +VD D +E A+ TR +++ET NP L + D A AEIA R G L+ D+TF Sbjct: 119 KVTYVDARDPGNIEKALTPATRMIWLETPTNPLLKLTDIRAAAEIASRAGAYLVVDNTFA 178 Query: 184 TPYLLRPIEHGVDIVVHSLTKWIGGHGTAIGGIVVDSGRFNWDNPRFTTLTQPDESYHGL 243 TPY RP+E G DIVVHS TK++ GH + G V + E Y L Sbjct: 179 TPYFQRPLELGADIVVHSATKYLSGHSDLLAGAV---------------MVNSSEVYEKL 223 Query: 244 RFAYDLGELNPIAYIIRMRVVPLRNLGGAISPD-NAWIFLQGLETLHLRMERHCENAAKV 302 ++ +N GA+ P ++++ ++ L+TL LRME H NA K+ Sbjct: 224 KYH--------------------QNAVGAVPPPLDSYLLMRSLKTLALRMEWHQHNAMKI 263 Query: 303 ADYLKAHPQVEWVRYPGLPEDPSYPNARKYLKQGFGGMVVFGIKGGKEAGKRFIDSLKLF 362 A++L++HP+V+ V YPGL P + A++ + G+ GM+ F +KGG A RF++SL++ Sbjct: 264 AEHLESHPKVDRVIYPGLSTHPQHSLAKRQM-TGYSGMLSFELKGGAGAAVRFVESLRII 322 Query: 363 SHVANVGDAKSLAIHPGSTTHSQLSEEQQRAAGIDPSLVRLS 404 + ++G +SL P TH+ + E++ GI LVRLS Sbjct: 323 ALAESLGGVESLVEIPSLMTHASIPREERLKKGITDGLVRLS 364 >gi|14601818|ref|NP_148359.1| cystathionine gamma-synthase [Aeropyrum pernix K1] Length = 389 Score = 135 bits (340), Expect = 2e-33 Identities = 103/375 (27%), Positives = 169/375 (45%), Gaps = 41/375 (10%) Query: 52 YTRLHNPTQDVLEQRXXXXXXXXXXXXXXXXXXXIFYSIINLATAGTE-IVSSKYLYGGT 110 Y R +NPT LE+ + +++ + G + ++ + YG T Sbjct: 52 YGRENNPTVLGLEEALTSLEEARWTLAFNSGMAALSTLVLHEVSRGAKKVLLERLTYGST 111 Query: 111 FTMFNNILPDYGIKVRFVDP--YDLEEVEAAINEKTRAVFVETIGNPTLDVPDFEAIAEI 168 ++ + GI+VR P DL ++ + + VE++ NPTL VP I Sbjct: 112 RSLLEMLSSITGIEVRLAGPPWEDLLDLVCWAD----LIIVESMANPTLRVPPLSGIYRE 167 Query: 169 AHRHGLPLIADSTFTTPYLLRPIEHGVDIVVHSLTKWIGGHGTAIGGIVVDSGRFNWDNP 228 A G+ ++ D+TF TP RP+E G + SLTK+I GH +GG + SGR D Sbjct: 168 AGSCGVRVVVDNTFATPIAYRPLERGAHYSLESLTKYIAGHNDVVGGSL--SGRVEED-- 223 Query: 229 RFTTLTQPDESYHGLRFAYDLGELNPIAYIIRMRVVPLRNLGGAISPDNAWIFLQGLETL 288 L P+ MR + LG + P +A++ +G++TL Sbjct: 224 -----------------------LEPLW---NMRKI----LGTIMQPIDAYLAWRGMKTL 253 Query: 289 HLRMERHCENAAKVADYLKAHPQVEWVRYPGLPEDPSYPNARKYLKQGFGGMVVFGIKGG 348 R E A +VA++L++H +V+ V YPGL P + AR+ L +G +V F I+GG Sbjct: 254 KARFEAQSRAAVEVAEWLESHRKVKKVYYPGLSSHPDHELARRELNGLYGAVVSFEIEGG 313 Query: 349 KEAGKRFIDSLKLFSHVANVGDAKSLAIHPGSTTHSQLSEEQQRAAGIDPSLVRLSXXXX 408 +E + + LKL + + G +++ +P ++HS L ++ G+ L+RLS Sbjct: 314 REEVFKLLSRLKLVTPSPSFGGVETIISYPAISSHSNLDPLERSELGVTDGLLRLSVGLE 373 Query: 409 XXXXXXXXXXQALEA 423 QAL A Sbjct: 374 DVSDIIDDLSQALSA 388 >gi|118431794|ref|NP_148487.2| aspartate aminotransferase [Aeropyrum pernix K1] Length = 405 Score = 44.3 bits (103), Expect = 6e-06 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Query: 131 YDLEEVEAAINEKTRAVFVETIGNPTLDV--PD-FEAIAEIAHRHGLPLIADSTF 182 +D+E +E A++EKTR + V NPT V PD EAI +IA R GL ++AD + Sbjct: 160 FDIEGIERAVSEKTRMIVVNNPHNPTGSVFPPDQVEAIHDIARRRGLIILADEIY 214 >gi|14602153|ref|NP_148701.1| aspartate aminotransferase [Aeropyrum pernix K1] Length = 397 Score = 41.2 bits (95), Expect = 5e-05 Identities = 41/116 (35%), Positives = 51/116 (43%), Gaps = 16/116 (13%) Query: 142 EKTRAVFVETIGNPTLDVPDFEAIAEI---AHRHGLPLIAD--------STFTTPYLLRP 190 EK RAVF+ NPT V +A+ EI A R G L+ D ST P +L P Sbjct: 168 EKPRAVFITNPNNPTGSVAGPKALGEIAAEAARTGSILVFDELYRGLEHSTEPAPTVLEP 227 Query: 191 -IEHGVD-IVVHSLTKWIGGHGTAIGGIVVDSGRFN---WDNPRFTTLTQPDESYH 241 +E G I V L+K G G IG S R W +TT++ P S H Sbjct: 228 ALEQGAHAISVSGLSKVYGLPGLRIGWAAATSRRLRDRMWMVKDYTTISPPKPSEH 283 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 426,935 Number of Sequences: 1700 Number of extensions: 18984 Number of successful extensions: 67 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 6 length of query: 426 length of database: 492,079 effective HSP length: 79 effective length of query: 347 effective length of database: 357,779 effective search space: 124149313 effective search space used: 124149313 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718972|ref|YP_003874504.1| cysteine synthase A [Spirochaeta thermophila DSM 6192] (309 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431373|ref|NP_147802.2| cystathionine beta-synthase [Aerop... 196 5e-52 gi|14601502|ref|NP_148041.1| cysteine synthase [Aeropyrum pernix... 75 2e-15 gi|118431476|ref|NP_147974.2| threonine synthase [Aeropyrum pern... 52 2e-08 gi|14601969|ref|NP_148514.1| threonine synthase [Aeropyrum perni... 48 3e-07 >gi|118431373|ref|NP_147802.2| cystathionine beta-synthase [Aeropyrum pernix K1] Length = 389 Score = 196 bits (499), Expect = 5e-52 Identities = 125/355 (35%), Positives = 175/355 (49%), Gaps = 63/355 (17%) Query: 7 ILELVGNTPLVRLNKVA-----DGLPAEVVAKLEFFNPLSSVKDRIGLSMVVEAEKEGIL 61 IL+LVG TPL+RL +V +G+ E+ KLE FNP SVKDRIGL M+++A G++ Sbjct: 13 ILDLVGGTPLLRLGRVERFFRLEGV--ELYGKLEMFNPGGSVKDRIGLYMLMDARSRGLV 70 Query: 62 TPGAVIVEATSGNTGIALAYVGAVKGYRVILTMPESMSIEXXXXXXXXXXXXXXTPAEKG 121 GAVI+E T+GNTG+ LA G+R++ MP MS+E TP Sbjct: 71 EEGAVIIEPTAGNTGVGLALAAIHYGFRLVAVMPSKMSVEKELILRAYGAYVIRTPTAVP 130 Query: 122 -----------------------------MKGAVEKAEELVRT----------------I 136 ++ VEK + LVR Sbjct: 131 PESPLSYYRVAEAVRNLLWMIGGRPGGGEVRKVVEKVQTLVREERVEDLRSILEASVEPT 190 Query: 137 PNAFLARQFENLANPKIHYETTGPEIWRDTEGKVDVLXXXXXXXXXXXXXXRYLKERNPE 196 P A++ Q+ N ANP+ H ETTG EIW T G+VDV+ RYLK P Sbjct: 191 PYAYIPNQYSNPANPRAHEETTGREIWMQTGGRVDVVYAGMGTRGTITGVARYLKRAKPS 250 Query: 197 VKLVAVEPSD----------SPVLSGGEPGPHLIQGIGAGFIPKVLDRSLIDEIITVKAE 246 V++V V+P SP + P+ ++GIG FIP +D SL+DE++ V + Sbjct: 251 VRIVGVDPEGSIYSLVKKGMSPHEAAKHARPYKVEGIGEDFIPSTIDLSLVDEVVVVTDQ 310 Query: 247 DAGGVARRLAKEEGIFAGISAGANVWAALQVASREEYRGKRVVVIVPDTGERYLS 301 A +AR LA+ EG+ AG S+GA ++AA++ RG VVI+PDTG Y++ Sbjct: 311 QAFSMARMLARLEGVLAGGSSGAALYAAVKHIKTRRVRGV-AVVILPDTGRNYIN 364 >gi|14601502|ref|NP_148041.1| cysteine synthase [Aeropyrum pernix K1] Length = 389 Score = 75.1 bits (183), Expect = 2e-15 Identities = 81/304 (26%), Positives = 133/304 (43%), Gaps = 40/304 (13%) Query: 14 TPLVRLN-KVADGLPAEVVAKLEFFNPLS-SVKDRIGLSMVVEAEKEGILTPGAVIVEAT 71 TPLVR ++ +G+ V KLE++NP S SVKDR + ++ + + G+++ +AT Sbjct: 97 TPLVRSRLQLPNGV--RVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKGSLVADAT 152 Query: 72 SGNTGIALAYVGAVKGYRVILTMPESMSIEXXXXXXXXXXXXXXTPAEKGMKGAVE-KAE 130 S N G+AL+ V + GYR + +P P G + V+ +A Sbjct: 153 SSNFGVALSAVARLYGYRARVYLP-----------GAAEEFGKLLPRLLGAQVIVDPEAP 201 Query: 131 ELVRTIPNAFL---------ARQFENLANPKIHYETTGPEIW-RDTEGKVDV--LXXXXX 178 V +P QF N AN + H T EI+ + G + + + Sbjct: 202 STVHLLPRVMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLG 261 Query: 179 XXXXXXXXXRYLKERNPEVKLVAVEPSDSPVLSGGEPGPHLIQGIGAGFI-PKVLDRSLI 237 YL+ +P ++ V V+P+ + G I+ + G + +LD S Sbjct: 262 TSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG-------IRRVETGMLWINMLDISY- 313 Query: 238 DEIITVKAEDAGGVARRLAKEEGIFAGISAGANVWAALQVASREEYRGKRVVVIVPDTGE 297 + V E+A +A+ +G+ G S GA V A + A+ + VV+VPDTG Sbjct: 314 -TLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGF 372 Query: 298 RYLS 301 +YLS Sbjct: 373 KYLS 376 >gi|118431476|ref|NP_147974.2| threonine synthase [Aeropyrum pernix K1] Length = 340 Score = 52.0 bits (123), Expect = 2e-08 Identities = 79/315 (25%), Positives = 123/315 (39%), Gaps = 58/315 (18%) Query: 12 GNTPLVRLNKVADGLPAEVVAKLEFFNPLSSVKDR-IGLSMVVEAEKEGILTPGAVIVEA 70 G+TPLV + V AKLE+ NP S KDR +G S+ +L V+V+ Sbjct: 49 GSTPLVEAGE-------GVYAKLEYLNPSGSFKDRGVGYSL----RMASLLGYDCVVVD- 96 Query: 71 TSGNTGIALAYVGAVKGYRVILTMPESMSIEXXXXXXXXXXXXXXTPAEKGMKGAVEKAE 130 +SGNTG++ A A G + + +P S P +K + A Sbjct: 97 SSGNTGLSTALYSARLGLKARVYVPRGAS-----------------PGKKALIRAT--GA 137 Query: 131 ELVRTIPNAFLARQFENLANPKIH------------YETTGPEIWRDTEGKVDVLXXXXX 178 ELV AR E A H ++ G E+ + G DVL Sbjct: 138 ELVEAESREEAARLAEAEAEKCFHVAHPTNPLFIEGVKSLGRELAGEAAGDTDVL-APVS 196 Query: 179 XXXXXXXXXRYLKERNPEVKLVAVEPSDSPVLSGGEPGPHLIQGIGAGFIPKVL--DRSL 236 R L+E +LVAV+ + L G P + G+ + +L Sbjct: 197 SGTLLLGIYRGLEEERGRFRLVAVQSPAAYSLKGLVPELGWVGGVEGRLLDALLLARPPR 256 Query: 237 IDEIITVKAEDAGGV----------ARRLAKEEGIFAGISAGANVWAALQVASREEYRGK 286 ++E+ E GGV A R A + G S+ A V+AA +V +++ Sbjct: 257 LEEMARAVRESGGGVVVVGDGAIPGAVREAVQRGFLVEPSSAA-VFAAHEVLREKKWLSG 315 Query: 287 RVVVIVPDTGERYLS 301 R ++++ +G +Y S Sbjct: 316 RSLLVLTGSGLKYAS 330 >gi|14601969|ref|NP_148514.1| threonine synthase [Aeropyrum pernix K1] Length = 393 Score = 48.1 bits (113), Expect = 3e-07 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 10/88 (11%) Query: 12 GNTPLVRLNKVADGLPAEVVAKLEFFNPLSSVKDR---IGLSMVVEAEKEGILTPGAVIV 68 G+TPLV+L ++ + EV KLEF NP S KDR +G+S+ ++V Sbjct: 57 GSTPLVKLENLSRAMGVEVYGKLEFLNPTGSFKDRGMTVGVSIASSFSYR-------LVV 109 Query: 69 EATSGNTGIALAYVGAVKGYRVILTMPE 96 A++GNT ++A G ++ +P+ Sbjct: 110 AASTGNTAASMAAYARRAGLNPVILIPK 137 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 316,091 Number of Sequences: 1700 Number of extensions: 13835 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 6 length of query: 309 length of database: 492,079 effective HSP length: 77 effective length of query: 232 effective length of database: 361,179 effective search space: 83793528 effective search space used: 83793528 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718973|ref|YP_003874505.1| AsnC family transcriptional regulator [Spirochaeta thermophila DSM 6192] (138 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 160,857 Number of Sequences: 1700 Number of extensions: 7017 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 138 length of database: 492,079 effective HSP length: 68 effective length of query: 70 effective length of database: 376,479 effective search space: 26353530 effective search space used: 26353530 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718974|ref|YP_003874506.1| inner membrane protein [Spirochaeta thermophila DSM 6192] (104 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.312 0.131 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 118,123 Number of Sequences: 1700 Number of extensions: 4496 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 104 length of database: 492,079 effective HSP length: 64 effective length of query: 40 effective length of database: 383,279 effective search space: 15331160 effective search space used: 15331160 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718975|ref|YP_003874507.1| hypothetical protein STHERM_c12930 [Spirochaeta thermophila DSM 6192] (395 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 454,276 Number of Sequences: 1700 Number of extensions: 22851 Number of successful extensions: 79 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79 Number of HSP's gapped (non-prelim): 0 length of query: 395 length of database: 492,079 effective HSP length: 79 effective length of query: 316 effective length of database: 357,779 effective search space: 113058164 effective search space used: 113058164 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718976|ref|YP_003874508.1| hypothetical protein STHERM_c12940 [Spirochaeta thermophila DSM 6192] (164 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.143 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 187,043 Number of Sequences: 1700 Number of extensions: 8835 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 164 length of database: 492,079 effective HSP length: 70 effective length of query: 94 effective length of database: 373,079 effective search space: 35069426 effective search space used: 35069426 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718977|ref|YP_003874509.1| flagellar motor switch protein FliG [Spirochaeta thermophila DSM 6192] (379 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 380,123 Number of Sequences: 1700 Number of extensions: 16824 Number of successful extensions: 108 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108 Number of HSP's gapped (non-prelim): 0 length of query: 379 length of database: 492,079 effective HSP length: 78 effective length of query: 301 effective length of database: 359,479 effective search space: 108203179 effective search space used: 108203179 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718978|ref|YP_003874510.1| hypothetical protein STHERM_c12960 [Spirochaeta thermophila DSM 6192] (432 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.143 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 515,590 Number of Sequences: 1700 Number of extensions: 25562 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 432 length of database: 492,079 effective HSP length: 79 effective length of query: 353 effective length of database: 357,779 effective search space: 126295987 effective search space used: 126295987 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718979|ref|YP_003874511.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (125 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 126,418 Number of Sequences: 1700 Number of extensions: 4815 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 125 length of database: 492,079 effective HSP length: 67 effective length of query: 58 effective length of database: 378,179 effective search space: 21934382 effective search space used: 21934382 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718980|ref|YP_003874512.1| GTP-binding protein EngA [Spirochaeta thermophila DSM 6192] (450 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601780|ref|NP_148321.1| GTP-binding protein HflX [Aeropyrum... 52 4e-08 gi|118431084|ref|NP_147290.2| GTP-binding protein [Aeropyrum per... 47 7e-07 >gi|14601780|ref|NP_148321.1| GTP-binding protein HflX [Aeropyrum pernix K1] Length = 372 Score = 51.6 bits (122), Expect = 4e-08 Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 22/216 (10%) Query: 164 RGIDELEQEIERRLVLPEEGGDAPSAPEIDVAILGKPNTGKSTLLNTLLGEERALVSDAP 223 R +D++ E RL + G V+I+G + GK++L N L GE+R V Sbjct: 162 RELDKMRSTRESRLSSRAKSGLK------QVSIVGYASAGKTSLFNLLTGEDRP-VGPEY 214 Query: 224 GTTRDLLEGRFQYRG-RWFRIVDTAGIRRRSRIEDDLEFYSVRRSLKVIEEAHVVFLLID 282 TT R + G DT G R E F++ +L ++ + + +ID Sbjct: 215 FTTLQPKHSRITWGGVEGVLAADTVGFIRDVPPEIVEAFHA---TLAEVKHSDAIVFVID 271 Query: 283 AQEGLTEQDKKIAAVAQRRGR------GVILVLNKWDALTPVP-NQFQAMKARIRFFFPH 335 A E ++ ++K+ A R +++ NK DAL P + A+ R PH Sbjct: 272 AAEPPSDIEEKLHAGIDTLARIGALSAPMVIAANKIDALQPPEIGERIALIEREASILPH 331 Query: 336 MDYAPIVKISARRGEGIDKLLDTALMLRDELGKRVE 371 P++ ISA+ G G+D+L+ + + + D G R+E Sbjct: 332 S--PPVIPISAKTGYGVDRLVRSIIKIVD--GDRLE 363 >gi|118431084|ref|NP_147290.2| GTP-binding protein [Aeropyrum pernix K1] Length = 341 Score = 47.4 bits (111), Expect = 7e-07 Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 9/134 (6%) Query: 187 PSAPEIDVAILGKPNTGKSTLLNTLLGEERALVSDAPGTTRDLLEGRFQYRGRWFRIVDT 246 P +P I V+ G P++GKSTL+ + + V+D P TT+ + G F+ ++VDT Sbjct: 159 PGSPTIIVS--GPPSSGKSTLVKNV-SRAKPKVADYPFTTKQIHIGHFEAGEGRVQVVDT 215 Query: 247 AGIRRRSRIEDDLEFYSVRRSLKVIEEAHVVFLL---IDAQEGLTEQDKKIAAVAQR--R 301 G+ RS E + +L++++ A V+FL DA GL Q + + Sbjct: 216 PGLLDRSLEEMNPVERRAAAALRLLDGA-VLFLFDPRPDAYMGLDRQASLLENTVAKLVT 274 Query: 302 GRGVILVLNKWDAL 315 GR + +V+NK DA+ Sbjct: 275 GRRIYVVVNKEDAV 288 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 460,668 Number of Sequences: 1700 Number of extensions: 21424 Number of successful extensions: 134 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 130 Number of HSP's gapped (non-prelim): 4 length of query: 450 length of database: 492,079 effective HSP length: 80 effective length of query: 370 effective length of database: 356,079 effective search space: 131749230 effective search space used: 131749230 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718981|ref|YP_003874513.1| phosphoenolpyruvate-protein phosphotransferase [Spirochaeta thermophila DSM 6192] (579 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431137|ref|NP_147390.2| phosphoenolpyruvate synthase [Aero... 143 1e-35 >gi|118431137|ref|NP_147390.2| phosphoenolpyruvate synthase [Aeropyrum pernix K1] Length = 820 Score = 143 bits (360), Expect = 1e-35 Identities = 121/398 (30%), Positives = 194/398 (48%), Gaps = 51/398 (12%) Query: 174 RMVKGIAMDAGGRTSHTAILARAFEIPSVLGLSEISRQVKSGQ--TLXXXXXXXXXXXXP 231 +M I D GG T+H AI+AR IP+V+G + ++++K G T+ Sbjct: 423 KMASAIVTDEGGMTAHAAIVARELGIPAVVGTGDATKKLKDGMLVTVDGSRGVVYAGAVK 482 Query: 232 TPEVMEQYQQRMREVEEQAIQLLSLNEVPGETRDGKRIFLRANIEVPEEVESVLAHGADG 291 T E E+ + E+ ++LS EV T +I++ N+ PEE++ +G Sbjct: 483 TEEAREE--EARPELGAAVAEVLS--EVYPVT--ATKIYM--NLGHPEEIDRYKHLPFEG 534 Query: 292 IGLFRTEFLFM-----HSRHLPTE-------EEQYAAYREVIEQMGDREVIIRTLDL--- 336 IGL R EF+ H +L + ++ +V + R V++R D Sbjct: 535 IGLMRIEFIISSWIGYHPMYLIEQGRGVYFIDKLAEGVAKVASAIYPRPVVVRFSDFKTN 594 Query: 337 ------GGEKVIPRLYDAHDEHNPILGWRAI-RFCLANPH-IFKIQLRAILRA-SIYG-- 385 GGEK Y+ DE NP++GWR + R+ N F++++RAI + +G Sbjct: 595 EYRRLKGGEK-----YETLDERNPMIGWRGVSRYIHPNYEPAFRLEVRAIKKVREEWGLK 649 Query: 386 KVSIMFPLISSQEEVVMGLEILDQVKEELEREGIPFERDIPVGAMIEVPAAALTADILAQ 445 V +MFP + + E+ L+I+ E EG+ RD V M+EVP+ AD A+ Sbjct: 650 NVWVMFPFVRTTWELERALKIM-------EEEGLSRGRDFKVWIMVEVPSTVFLADEFAK 702 Query: 446 KVDFFSIGTNDLIQYTLATDRGNERVAYL--YQPFHPAVLRLIQMTVDHAHQAGIPVGMC 503 VD FSIG+NDL Q L DR + +A + + PAVLR I++ ++ AH G V +C Sbjct: 703 MVDGFSIGSNDLTQLVLGVDRDSGFLAKMGYFDERDPAVLRSIEILIEKAHSQGATVSIC 762 Query: 504 GE-MAGDPLATFVLIGLGLDELSMSPASIPEVKRLVRS 540 G+ + P L+ G+D +S++P ++ V+R V S Sbjct: 763 GQGPSVYPELVEFLVRRGIDSISVNPDAVVRVRRQVAS 800 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 548,586 Number of Sequences: 1700 Number of extensions: 24673 Number of successful extensions: 107 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101 Number of HSP's gapped (non-prelim): 1 length of query: 579 length of database: 492,079 effective HSP length: 82 effective length of query: 497 effective length of database: 352,679 effective search space: 175281463 effective search space used: 175281463 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718982|ref|YP_003874514.1| hypothetical protein STHERM_c13000 [Spirochaeta thermophila DSM 6192] (240 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.142 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 176,657 Number of Sequences: 1700 Number of extensions: 5883 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 240 length of database: 492,079 effective HSP length: 74 effective length of query: 166 effective length of database: 366,279 effective search space: 60802314 effective search space used: 60802314 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718983|ref|YP_003874515.1| hemolysin [Spirochaeta thermophila DSM 6192] (263 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.144 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 301,759 Number of Sequences: 1700 Number of extensions: 14700 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 0 length of query: 263 length of database: 492,079 effective HSP length: 75 effective length of query: 188 effective length of database: 364,579 effective search space: 68540852 effective search space used: 68540852 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718984|ref|YP_003874516.1| hypothetical protein STHERM_c13020 [Spirochaeta thermophila DSM 6192] (261 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 290,783 Number of Sequences: 1700 Number of extensions: 13509 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 261 length of database: 492,079 effective HSP length: 75 effective length of query: 186 effective length of database: 364,579 effective search space: 67811694 effective search space used: 67811694 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718985|ref|YP_003874517.1| HDIG domain-containing protein [Spirochaeta thermophila DSM 6192] (509 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.134 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 386,731 Number of Sequences: 1700 Number of extensions: 15834 Number of successful extensions: 86 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86 Number of HSP's gapped (non-prelim): 0 length of query: 509 length of database: 492,079 effective HSP length: 81 effective length of query: 428 effective length of database: 354,379 effective search space: 151674212 effective search space used: 151674212 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718986|ref|YP_003874518.1| Maf-like protein [Spirochaeta thermophila DSM 6192] (201 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 228,982 Number of Sequences: 1700 Number of extensions: 10099 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 201 length of database: 492,079 effective HSP length: 72 effective length of query: 129 effective length of database: 369,679 effective search space: 47688591 effective search space used: 47688591 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718987|ref|YP_003874519.1| Maf-like protein [Spirochaeta thermophila DSM 6192] (201 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 228,386 Number of Sequences: 1700 Number of extensions: 10041 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 0 length of query: 201 length of database: 492,079 effective HSP length: 72 effective length of query: 129 effective length of database: 369,679 effective search space: 47688591 effective search space used: 47688591 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718988|ref|YP_003874520.1| 30S ribosomal protein S2 [Spirochaeta thermophila DSM 6192] (316 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601603|ref|NP_148143.1| 30S ribosomal protein S2 [Aeropyrum... 47 8e-07 >gi|14601603|ref|NP_148143.1| 30S ribosomal protein S2 [Aeropyrum pernix K1] Length = 205 Score = 46.6 bits (109), Expect = 8e-07 Identities = 24/65 (36%), Positives = 39/65 (60%) Query: 158 PGVVFIIDTKHEAIAVAEAKKLGIPIIGVVDTNCNPEIIDHPIPGNDDAIRAINLFSKII 217 P VV + D + + AV EA K+GIP++ +VDT+ + E ID IP N+ R++ L I+ Sbjct: 115 PDVVVVTDPRMDRQAVVEASKVGIPVVALVDTDNSIENIDLVIPANNRGRRSLALIYWIL 174 Query: 218 ADAVI 222 ++ Sbjct: 175 TREIL 179 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 263,237 Number of Sequences: 1700 Number of extensions: 10297 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 1 length of query: 316 length of database: 492,079 effective HSP length: 77 effective length of query: 239 effective length of database: 361,179 effective search space: 86321781 effective search space used: 86321781 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718989|ref|YP_003874521.1| elongation factor Ts [Spirochaeta thermophila DSM 6192] (280 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.134 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 269,894 Number of Sequences: 1700 Number of extensions: 11452 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 0 length of query: 280 length of database: 492,079 effective HSP length: 76 effective length of query: 204 effective length of database: 362,879 effective search space: 74027316 effective search space used: 74027316 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718990|ref|YP_003874522.1| ribosome recycling factor [Spirochaeta thermophila DSM 6192] (184 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.310 0.128 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 147,791 Number of Sequences: 1700 Number of extensions: 5435 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 184 length of database: 492,079 effective HSP length: 72 effective length of query: 112 effective length of database: 369,679 effective search space: 41404048 effective search space used: 41404048 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718991|ref|YP_003874523.1| undecaprenyl pyrophosphate synthetase [Spirochaeta thermophila DSM 6192] (232 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601375|ref|NP_147911.1| UDP pyrophosphate synthetase [Aerop... 95 1e-21 >gi|14601375|ref|NP_147911.1| UDP pyrophosphate synthetase [Aeropyrum pernix K1] Length = 219 Score = 95.1 bits (235), Expect = 1e-21 Identities = 77/233 (33%), Positives = 110/233 (47%), Gaps = 29/233 (12%) Query: 8 PRHIGIIMDGNGRWATRRGLPRYKGHEEGLKATKRVVKAAAE--RGIPYLSLYTFSTENW 65 PR IGII DGN RWA+ RG Y + G + KR++ + I + LY S +N Sbjct: 4 PRAIGIIPDGNRRWASLRGENLYIAYYTGYRNVKRILTYIRDFYPAIRSVYLYVLSRDNC 63 Query: 66 -KRAQEEVSFLMGLVRRYLKKEFDFYREYGIRIVHSGNLE--GLPREIRRDLLDVMRDTA 122 KR++ E+S L ++RR ++++ + G +V G++ LP IR L D Sbjct: 64 SKRSRAELSILYRIMRRSIERDIAEIEKGGASLVIVGDINHPNLPDNIRESLAPYHFD-- 121 Query: 123 SFTGLTLNIALNYGGRDEILRAMKR------WLEEGGAPELTEESFRRYLDVPELPDPDL 176 + L G + R + W E P+ R LD + DL Sbjct: 122 --------MYLKKGSLPDGRRVVAGLCYDPFWEIEHYTPKTLPS---RLLD-----EIDL 165 Query: 177 VIRTAGEQRLSNFLIWQAAYAEYYFTPVLWPDFSERDFDEALQDYASRTRKFG 229 VIRT GE+RLS+F YAE YF LWPDF+ D D A+Q +++R R G Sbjct: 166 VIRTGGEKRLSSFFPLLTRYAELYFIDKLWPDFTREDLDRAVQWFSTRRRPMG 218 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 268,212 Number of Sequences: 1700 Number of extensions: 12777 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 2 length of query: 232 length of database: 492,079 effective HSP length: 74 effective length of query: 158 effective length of database: 366,279 effective search space: 57872082 effective search space used: 57872082 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718992|ref|YP_003874524.1| phosphatidate cytidylyltransferase [Spirochaeta thermophila DSM 6192] (278 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.144 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 258,977 Number of Sequences: 1700 Number of extensions: 10750 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 278 length of database: 492,079 effective HSP length: 76 effective length of query: 202 effective length of database: 362,879 effective search space: 73301558 effective search space used: 73301558 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718993|ref|YP_003874525.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Spirochaeta thermophila DSM 6192] (378 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 357,340 Number of Sequences: 1700 Number of extensions: 15089 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 0 length of query: 378 length of database: 492,079 effective HSP length: 78 effective length of query: 300 effective length of database: 359,479 effective search space: 107843700 effective search space used: 107843700 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718994|ref|YP_003874526.1| hypothetical protein STHERM_c13120 [Spirochaeta thermophila DSM 6192] (454 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.143 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 510,212 Number of Sequences: 1700 Number of extensions: 25555 Number of successful extensions: 110 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110 Number of HSP's gapped (non-prelim): 0 length of query: 454 length of database: 492,079 effective HSP length: 80 effective length of query: 374 effective length of database: 356,079 effective search space: 133173546 effective search space used: 133173546 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718995|ref|YP_003874527.1| hypothetical protein STHERM_c13130 [Spirochaeta thermophila DSM 6192] (656 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 661,250 Number of Sequences: 1700 Number of extensions: 30210 Number of successful extensions: 97 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97 Number of HSP's gapped (non-prelim): 0 length of query: 656 length of database: 492,079 effective HSP length: 83 effective length of query: 573 effective length of database: 350,979 effective search space: 201110967 effective search space used: 201110967 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718996|ref|YP_003874528.1| hypothetical protein STHERM_c13140 [Spirochaeta thermophila DSM 6192] (455 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 406,179 Number of Sequences: 1700 Number of extensions: 16712 Number of successful extensions: 74 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74 Number of HSP's gapped (non-prelim): 0 length of query: 455 length of database: 492,079 effective HSP length: 80 effective length of query: 375 effective length of database: 356,079 effective search space: 133529625 effective search space used: 133529625 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718997|ref|YP_003874529.1| 50S ribosomal protein L9 [Spirochaeta thermophila DSM 6192] (176 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.131 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 162,491 Number of Sequences: 1700 Number of extensions: 6359 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 176 length of database: 492,079 effective HSP length: 71 effective length of query: 105 effective length of database: 371,379 effective search space: 38994795 effective search space used: 38994795 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718998|ref|YP_003874530.1| hypothetical protein STHERM_c13160 [Spirochaeta thermophila DSM 6192] (316 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.144 0.481 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 237,904 Number of Sequences: 1700 Number of extensions: 9233 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 0 length of query: 316 length of database: 492,079 effective HSP length: 77 effective length of query: 239 effective length of database: 361,179 effective search space: 86321781 effective search space used: 86321781 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307718999|ref|YP_003874531.1| 30S ribosomal protein S18 [Spirochaeta thermophila DSM 6192] (102 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,753 Number of Sequences: 1700 Number of extensions: 2146 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 102 length of database: 492,079 effective HSP length: 64 effective length of query: 38 effective length of database: 383,279 effective search space: 14564602 effective search space used: 14564602 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719000|ref|YP_003874532.1| single-strand binding protein [Spirochaeta thermophila DSM 6192] (141 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 115,145 Number of Sequences: 1700 Number of extensions: 4186 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 141 length of database: 492,079 effective HSP length: 69 effective length of query: 72 effective length of database: 374,779 effective search space: 26984088 effective search space used: 26984088 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719001|ref|YP_003874533.1| hypothetical protein STHERM_c13190 [Spirochaeta thermophila DSM 6192] (114 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.132 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,036 Number of Sequences: 1700 Number of extensions: 2889 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 114 length of database: 492,079 effective HSP length: 66 effective length of query: 48 effective length of database: 379,879 effective search space: 18234192 effective search space used: 18234192 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719002|ref|YP_003874534.1| hypothetical protein STHERM_c13200 [Spirochaeta thermophila DSM 6192] (147 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 139,501 Number of Sequences: 1700 Number of extensions: 5138 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 147 length of database: 492,079 effective HSP length: 69 effective length of query: 78 effective length of database: 374,779 effective search space: 29232762 effective search space used: 29232762 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719003|ref|YP_003874535.1| nitrogen fixation protein AnfA [Spirochaeta thermophila DSM 6192] (524 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 435,501 Number of Sequences: 1700 Number of extensions: 17861 Number of successful extensions: 83 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83 Number of HSP's gapped (non-prelim): 0 length of query: 524 length of database: 492,079 effective HSP length: 81 effective length of query: 443 effective length of database: 354,379 effective search space: 156989897 effective search space used: 156989897 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719004|ref|YP_003874536.1| ammonium transporter [Spirochaeta thermophila DSM 6192] (454 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 434,538 Number of Sequences: 1700 Number of extensions: 18199 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 0 length of query: 454 length of database: 492,079 effective HSP length: 80 effective length of query: 374 effective length of database: 356,079 effective search space: 133173546 effective search space used: 133173546 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719005|ref|YP_003874537.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (113 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.139 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 118,102 Number of Sequences: 1700 Number of extensions: 5027 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 113 length of database: 492,079 effective HSP length: 66 effective length of query: 47 effective length of database: 379,879 effective search space: 17854313 effective search space used: 17854313 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719006|ref|YP_003874538.1| hypothetical protein STHERM_c13240 [Spirochaeta thermophila DSM 6192] (90 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.145 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,462 Number of Sequences: 1700 Number of extensions: 2681 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 90 length of database: 492,079 effective HSP length: 59 effective length of query: 31 effective length of database: 391,779 effective search space: 12145149 effective search space used: 12145149 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719007|ref|YP_003874539.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Spirochaeta thermophila DSM 6192] (465 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601424|ref|NP_147962.1| acetyl-lysine aminotransferase/acet... 116 1e-27 gi|14600726|ref|NP_147247.1| 4-aminobutyrate aminotransferase [A... 105 3e-24 gi|118431820|ref|NP_148523.2| glutamate-1-semialdehyde aminotran... 89 2e-19 gi|118431743|ref|NP_148406.2| glutamate-1-semialdehyde aminotran... 72 2e-14 >gi|14601424|ref|NP_147962.1| acetyl-lysine aminotransferase/acetylornithine aminotransferase [Aeropyrum pernix K1] Length = 388 Score = 116 bits (291), Expect = 1e-27 Identities = 96/320 (30%), Positives = 137/320 (42%), Gaps = 43/320 (13%) Query: 30 LLITHAEGPYLFDHLGNRYYDAIGSWWTTVWGHRYPPLIEAIRSQLERLDHVLFAGCTHP 89 L I Y++D G +Y D GH P ++EA+ Q L + T P Sbjct: 16 LRIVKGSMQYVWDDSGRKYLDCHAGHGAAFLGHSNPAIVEAVVRQARELVAASSSFST-P 74 Query: 90 PAIQLVNTLSHTLHPSLSRFFFSDDGSTAVEVALKMAYQYYRNRGEKGRELFIHLKDSYH 149 + + S P F + G+ AVE ALK A+ RG + LK+S+H Sbjct: 75 SLEEALTEFSRIAPPWAEEIVFLNTGTEAVEAALKAAWLATGKRG------IVALKNSFH 128 Query: 150 GDTSGCMSVGGIEIYFSHYRGLMVQSVEVLPPLRKYASSPPPFTEDGGDERVLEEGLTRM 209 G T +SV Y RG+ V L P T+ G E+++ E Sbjct: 129 GRTLASLSVTWNPRY---RRGVPVLDTRFLSPS----------TDPGEVEKLVPED---- 171 Query: 210 EEVLHRFRDKVAGVIVEPILMGAAGMQVYSPRYLRRLRELTSEYQILLIFDEVVTGCGRT 269 A +IVEPI G G+ + LRE LLIFDE+ TG GRT Sbjct: 172 ----------TAAIIVEPI-QGEGGLTKIYAELAKALREAADRVGALLIFDEIQTGFGRT 220 Query: 270 GAMWAYEQAGVVPDILVAAKGLTGGMLPLALTVTTDEIYYAFYDDYLKGKTFFHGHSYTA 329 G +WA+E GV PDI+ A K + GG LP + ++ + + G+ HG ++ A Sbjct: 221 GRVWAHESLGVEPDIMTAGKSIAGG-LPASAVLSREGVLATL----ASGR---HGSTHAA 272 Query: 330 NPIACALAHANATLLRESGI 349 NP++ A A + LRE G+ Sbjct: 273 NPLSMAAVAAASRFLREEGV 292 >gi|14600726|ref|NP_147247.1| 4-aminobutyrate aminotransferase [Aeropyrum pernix K1] Length = 452 Score = 105 bits (261), Expect = 3e-24 Identities = 102/376 (27%), Positives = 173/376 (46%), Gaps = 27/376 (7%) Query: 21 MKDYEQEDHLLITHAEGPYLFDHLGNRYYDAIGSWWTTVWGHRYPPLIEAIRSQLERLDH 80 M+ + + L++ G + D GNRY D GH +P ++EA++ QLER H Sbjct: 29 MQSFTRWYPLVVKRGYGAVVEDVDGNRYIDFNAGIAVLNVGHNHPRVVEAVKRQLERFLH 88 Query: 81 VLFAGCTHPPAIQLVNTLSHTLHPSL-SRFFFSDDGSTAVEVALKMAYQYYRNRGEKGRE 139 + A+ L+ ++ S ++ FF++ G+ ++E ++K+ ++R R Sbjct: 89 YSLTDFYYEEAVSAAERLARSVPISGGAKTFFTNSGAESIEASIKVVRAFFRGT----RP 144 Query: 140 LFIHLKDSYHGDTSGCMSVGGIE-IYFSHYRGLMVQSVEVLPPLRKYASSPPPFTEDGGD 198 I +HG T G MS + ++ + + L+ + P P P E Sbjct: 145 YIISFLGGFHGRTYGAMSASASKPVHRARFYPLVPGFIHA--PYPDPYRCPFPGLEG--- 199 Query: 199 ERVLEEGLTRMEE-VLHRFRD--KVAGVIVEPILMGAAGMQVYSPRYLRRLRELTSEYQI 255 E E ++ +E+ + + D +VA + EPI G G V +L L++L ++ I Sbjct: 200 EACGEAAVSYIEDYIFSKLVDPGEVAAFLFEPI-QGEGGYVVPPDSFLPSLQKLARKHGI 258 Query: 256 LLIFDEVVTGCGRTGAMWAYEQAGVVPDILVAAKGLTGGMLPLALTVTTDEIYYAFYDDY 315 LLI DEV TG RTG M+A E GV PD++ AK + GG LPL V E+ Sbjct: 259 LLIADEVQTGFARTGRMFAVEHWGVEPDVMALAKAMGGG-LPLGAAVGRSEVM-----SL 312 Query: 316 LKGKTFFHGHSYTANPIACALAHANATLLRESGILETNKETWEIFHRELLGWRGTPW--V 373 +G H +++ NP+A A +A ++ + E ++ E ++LG V Sbjct: 313 PRGS---HANTFGGNPVALAAFNAVMDVIEGERLWERSQRLGE-KALKILGEAAEELSIV 368 Query: 374 GDIRFIGCVGAVDVVR 389 G +R G + V++VR Sbjct: 369 GHVRGKGLMIGVELVR 384 >gi|118431820|ref|NP_148523.2| glutamate-1-semialdehyde aminotransferase [Aeropyrum pernix K1] Length = 429 Score = 89.0 bits (219), Expect = 2e-19 Identities = 92/346 (26%), Positives = 145/346 (41%), Gaps = 40/346 (11%) Query: 32 ITHAEGPYLFDHLGNRYYDAIGSWWTTVWGHRYPPLIEAIRSQLERLDHVLFAGCTHPPA 91 + EG YL+ G R D + ++ + GH++P ++EA+ L R L+ Sbjct: 37 VKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALAR--GWLYGAPGEAEV 94 Query: 92 IQLVNTLSHTLHPSLSRFFFSDDGSTAVEVALKMAYQYYRNRGEKGRELFIHLKDSYHGD 151 + L + + RF + G+ A A+++A RG GR+L + YHG Sbjct: 95 LLAEKILGYVKRGGMIRFV--NSGTEATMTAIRLA------RGYTGRDLILKFDGCYHGS 146 Query: 152 TSGCMSVGGIEIYFSHYRGLMVQSVEVLPPLRKYASSPPPFTEDGGDERVLEEGLTRMEE 211 + G +HY V + +P + P+ + ERV E Sbjct: 147 HDAVLVAAGSAA--AHYG---VPTSAGVPEAVARLTLVTPYNDVEALERVFAE------- 194 Query: 212 VLHRFRDKVAGVIVEPILMGAAGMQVYSPR--YLRRLRELTSEYQILLIFDEVVTGCGRT 269 + D++AGVIVEP++ A V PR +L L+ L+ E LLI DEVVTG R Sbjct: 195 ----YGDRIAGVIVEPVIANAG---VIPPRREFLAALQRLSRESGALLILDEVVTGF-RL 246 Query: 270 GAMWAYEQAGVVPDILVAAKGLTGGMLPLALTVTTDEIYYAFYDDYLKGKTFFHGHSYTA 329 G A + DI+V K + GG P+ + E+ +GK F G ++ A Sbjct: 247 GLEGAQGYFNIEGDIIVLGK-IIGGGFPVGAVAGSREVMSLLTP---QGKVFNAG-TFNA 301 Query: 330 NPIACALAHANATLLRESGILETNKETWEIFHR---ELLGWRGTPW 372 +PI A A L E + ++E + E+L G P+ Sbjct: 302 HPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPY 347 >gi|118431743|ref|NP_148406.2| glutamate-1-semialdehyde aminotransferase [Aeropyrum pernix K1] Length = 430 Score = 72.4 bits (176), Expect = 2e-14 Identities = 77/328 (23%), Positives = 137/328 (41%), Gaps = 34/328 (10%) Query: 22 KDYEQEDHLLITHAEGPYLFDHLGNRYYDAIGSWWTTVWGHRYPPLIEAIRSQLERLDHV 81 +++ + L+++ A+G + D+ G Y D ++ GH + + QL RL V Sbjct: 27 REFHSIEPLIVSWAKGSRIRDYRGREYIDFHMAFGAVALGHNDDDVAARVSEQLNRL--V 84 Query: 82 LFAGCTHPPAIQLVNTLSHTLHPSLSRFFFSDDGSTAVEVALKMAYQYYRNRGEKGRELF 141 L I+ L P + F++ GS AV +A+++A Y GR++ Sbjct: 85 LHGAGVSDAEIEFAKMLIRKF-PMYDKVLFTNSGSEAVMMAMRLARAY------TGRDVV 137 Query: 142 IHLKDSYHGDTSGCMSVGGIEIYFSHYRGLMVQSVEVLPPLRKYASSPPPFTEDGGDERV 201 + +YHG S+ I+ S +G V+S V P P+ + Sbjct: 138 VKFDGNYHGWHD--YSIYNIKNPAS--KGKTVESKGV-PSATASTVEVLPYND------- 185 Query: 202 LEEGLTRMEEVLHRFRDKVAGVIVEPILMGAAGMQVYSPRYLRRLRELTSEYQILLIFDE 261 + +E+ RF D+VA I+EP+ + G+ ++ RLR+L + LLIFDE Sbjct: 186 ----VDALEDYAERFGDRVAAYILEPVAH-SMGVIPAEKGFVERLRKLCDTHGSLLIFDE 240 Query: 262 VVTGCGRTGAMWAYEQAGVVPDILVAAKGLTGGMLPLALTVTTDEIYYAFYDDYLKGKTF 321 ++T R + GV D+ K + GM P+A + D + L + Sbjct: 241 IITFI-RASDRGMQDYFGVRADLTTVGKAIANGM-PVAAVLGGDNVM------ELLARGV 292 Query: 322 FHGHSYTANPIACALAHANATLLRESGI 349 +Y+ +P++ A A + G+ Sbjct: 293 VSSGTYSGHPLSMAAGVATLEKAEDVGL 320 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 521,015 Number of Sequences: 1700 Number of extensions: 24687 Number of successful extensions: 81 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 5 length of query: 465 length of database: 492,079 effective HSP length: 80 effective length of query: 385 effective length of database: 356,079 effective search space: 137090415 effective search space used: 137090415 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719008|ref|YP_003874540.1| hypothetical protein STHERM_c13260 [Spirochaeta thermophila DSM 6192] (398 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.138 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 384,222 Number of Sequences: 1700 Number of extensions: 15879 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 0 length of query: 398 length of database: 492,079 effective HSP length: 79 effective length of query: 319 effective length of database: 357,779 effective search space: 114131501 effective search space used: 114131501 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719009|ref|YP_003874541.1| hypothetical protein STHERM_c13270 [Spirochaeta thermophila DSM 6192] (217 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 242,160 Number of Sequences: 1700 Number of extensions: 11037 Number of successful extensions: 27 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 0 length of query: 217 length of database: 492,079 effective HSP length: 73 effective length of query: 144 effective length of database: 367,979 effective search space: 52988976 effective search space used: 52988976 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719010|ref|YP_003874542.1| biotin biosynthesis protein BioC [Spirochaeta thermophila DSM 6192] (252 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 264,032 Number of Sequences: 1700 Number of extensions: 10852 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 252 length of database: 492,079 effective HSP length: 75 effective length of query: 177 effective length of database: 364,579 effective search space: 64530483 effective search space used: 64530483 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719011|ref|YP_003874543.1| dethiobiotin synthetase 2 [Spirochaeta thermophila DSM 6192] (230 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 239,721 Number of Sequences: 1700 Number of extensions: 10306 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 230 length of database: 492,079 effective HSP length: 74 effective length of query: 156 effective length of database: 366,279 effective search space: 57139524 effective search space used: 57139524 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719012|ref|YP_003874544.1| glutamate-ammonia-ligase adenylyltransferase [Spirochaeta thermophila DSM 6192] (1240 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,189,114 Number of Sequences: 1700 Number of extensions: 50987 Number of successful extensions: 134 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134 Number of HSP's gapped (non-prelim): 0 length of query: 1240 length of database: 492,079 effective HSP length: 88 effective length of query: 1152 effective length of database: 342,479 effective search space: 394535808 effective search space used: 394535808 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719013|ref|YP_003874545.1| xylulokinase [Spirochaeta thermophila DSM 6192] (414 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430842|ref|NP_146905.2| carbohydrate kinase [Aeropyrum per... 53 1e-08 >gi|118430842|ref|NP_146905.2| carbohydrate kinase [Aeropyrum pernix K1] Length = 506 Score = 53.1 bits (126), Expect = 1e-08 Identities = 81/368 (22%), Positives = 128/368 (34%), Gaps = 29/368 (7%) Query: 61 VSRMAYLAREFPGVYRRARWVMGAPEFLCACLTGRVGMISPSAAF---------DGVVWS 111 +S+M +L P ++ +A + G + T ++SP A VWS Sbjct: 148 LSKMVWLRENKPDLFTKAHTI-GTLKTWVLAKTAEARLVSPDDAHLTWLADTRGGRAVWS 206 Query: 112 EDEVRGAGLVWEKCPPFVRSGERWGVVRGEVAARWGLPSGVPVYAGGTDFFMALLGCGVV 171 R G+ EK P + G + A GLP G+PV G D + +G G + Sbjct: 207 PRLARRYGIPLEKLPGIAGPTDVAGGLVSSAARDLGLPQGIPVIVGAGDIASSAVGSGAL 266 Query: 172 TEGEVCDRAGTSE--GLNWAVRESVAGEGVRCLPHVVEGLWNVGVVFGFSGRMFEWFRGL 229 GE GTS G++ R + L G + V +G M +W + Sbjct: 267 AAGEYHIYVGTSSWIGVHSTRRLLDVRHYIGSLLSAKPGEYLVIGEQEIAGGMIDWILDV 326 Query: 230 SGQGGRGYVEMMXXXXXXXXXXXXXXXXXXXPFFFPAGHRGEVWD-FTHGVFWGFGVEHG 288 +G R ++ P+ + G R + D GV G + H Sbjct: 327 TGMDYRAVEDI-------HSIPPGSEGLIATPWLY--GERTPIDDPHAKGVLVGLTLRHT 377 Query: 289 RVEMAAAVVEALGMAVQDAWGV--LRRYGCGADRVVMCGGQAKNGVWVQVRADMLGVRVV 346 + + A VE G+A+ AW + + R V GG + +V A L Sbjct: 378 KKHLVRAAVE--GVALNIAWAMEHMTRLAGKPKLVRGVGGGFRLRTLAKVIASAL--NAT 433 Query: 347 VPAVRDAELVG-DACCAWKGAGMFGSLAEAAKGLVRYEAEVVPDXXXXXXXXXXXXXYGE 405 + V E+ G A A + GS E+ G + D Y E Sbjct: 434 IETVSQPEMAGVRGAGALAAAALKGSSIESEAGKIPVSWRAEADSNASKAYKDLLQIYQE 493 Query: 406 EWERVRRV 413 + R++ V Sbjct: 494 IYSRLKSV 501 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.475 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 512,014 Number of Sequences: 1700 Number of extensions: 26386 Number of successful extensions: 66 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65 Number of HSP's gapped (non-prelim): 1 length of query: 414 length of database: 492,079 effective HSP length: 79 effective length of query: 335 effective length of database: 357,779 effective search space: 119855965 effective search space used: 119855965 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719014|ref|YP_003874546.1| hypothetical protein STHERM_c13320 [Spirochaeta thermophila DSM 6192] (421 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431610|ref|NP_148200.2| ribose-phosphate pyrophosphokinase... 45 3e-06 >gi|118431610|ref|NP_148200.2| ribose-phosphate pyrophosphokinase [Aeropyrum pernix K1] Length = 309 Score = 45.1 bits (105), Expect = 3e-06 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 12/156 (7%) Query: 189 GVSRIITLDIHSTEIQNSFNTLRLENLHASYQILLKLSDLVDLQHEDLVVVAPDTGSVSR 248 G + + ++++H + + F+ L +Y L + ++ ++VAPD GS+ R Sbjct: 126 GYNALASIEVHKEYVLDYFDGSTLNIFPFTYM----LKETGISCGDNTIIVAPDKGSLPR 181 Query: 249 NKFYAGSLK-KPLAVIYKERDYSKVSTDASNSNISSLKLLGNVQGKTVFMADDMLGTGGT 307 + A + + KERD + S + +GK + DD++ TGGT Sbjct: 182 VERLARETGCRSYGYLVKERDRITGEVRLAKSTVDP-------RGKNAIVVDDIISTGGT 234 Query: 308 LIKAMRLLKEEGAERIICAVSLPLFTGDAVEHFEQA 343 + A + L E GA + + L G+A E +A Sbjct: 235 IALASQWLLENGANSVFVLAAHYLGIGNAEEKMMKA 270 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 361,729 Number of Sequences: 1700 Number of extensions: 14257 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 1 length of query: 421 length of database: 492,079 effective HSP length: 79 effective length of query: 342 effective length of database: 357,779 effective search space: 122360418 effective search space used: 122360418 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719015|ref|YP_003874547.1| hypothetical protein STHERM_c13330 [Spirochaeta thermophila DSM 6192] (241 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 202,725 Number of Sequences: 1700 Number of extensions: 7413 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 241 length of database: 492,079 effective HSP length: 74 effective length of query: 167 effective length of database: 366,279 effective search space: 61168593 effective search space used: 61168593 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719016|ref|YP_003874548.1| hypothetical protein STHERM_c13340 [Spirochaeta thermophila DSM 6192] (135 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 143,130 Number of Sequences: 1700 Number of extensions: 5965 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 135 length of database: 492,079 effective HSP length: 68 effective length of query: 67 effective length of database: 376,479 effective search space: 25224093 effective search space used: 25224093 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719017|ref|YP_003874549.1| hypothetical protein STHERM_c13350 [Spirochaeta thermophila DSM 6192] (451 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431864|ref|NP_148594.2| MatE efflux family protein [Aeropy... 113 1e-26 gi|118431584|ref|NP_148157.2| MatE efflux family protein [Aeropy... 99 3e-22 >gi|118431864|ref|NP_148594.2| MatE efflux family protein [Aeropyrum pernix K1] Length = 475 Score = 113 bits (282), Expect = 1e-26 Identities = 101/429 (23%), Positives = 180/429 (41%), Gaps = 10/429 (2%) Query: 15 LAWPIMVETALRTTLTSVDTFMLARYADEXXXXXXXXXXXXXXXXLIYMMGATGASILVS 74 LA PI+ L T SVD L R + E + + T S LVS Sbjct: 25 LATPIVAARLLAATQESVDAIFLGRVSTEDLAAPAAASPLLWLFAGLGIGINTTLSALVS 84 Query: 75 QHLGAGDERTAAEIARTALFYNXXXXXXXXXXXXXXXDPLIASLGVDATVGGYARDYLYV 134 Q +GA D +A A L + + G A Y V Sbjct: 85 QAIGARDYASAQRYASKLLGATLMLGAASALAIILTAETVFILQGFQGRSLEVALAYTLV 144 Query: 135 YFSCSVFQAMSLLLASLVRSYGYSSIPMYVTFGANLLNVAGNYLVLFGPGGFPVLGVKGV 194 F +++ + G + P V+ +++LNV + +++FG P LG G Sbjct: 145 EAVGMPFMLALFYFNAVMAASGDTRTPFKVSALSSILNVILDPILIFGLILLPPLGAVGA 204 Query: 195 ALSTVISQAAGMVALFIVVLRRPYLDFLRGFSANWRHVRNILRIGGPSAGENLSYNLAQM 254 A++TV+++AA + F ++LR ++ + + + +ILRIGGP + + L ++ + Sbjct: 205 AVATVLARAAAVSIAFYLLLRGAPGFRVKPSMPDRQLIGHILRIGGPVSLQRLVVSMGFL 264 Query: 255 ALLYLITPMGTAAIASYTYTVNISRFSFIVSLSLGRASQILVGHRVGAGENDRAFREVLR 314 ++ ++ +G +A+Y ++ I + A+ +VG +GA RA R Sbjct: 265 VMMGIVARLGAPVVAAYNVSLVIIHIVQSATFGFNIATATVVGQNLGASNISRAVRAAY- 323 Query: 315 TTAAAMVSSLLAMGTIALF--RMPVIHLLTADEEIVRITSELLLWAVILEFGRPINLVVI 372 T A+V LL++G +A+ R ++ L T+ EE+ ++ I+ G P Sbjct: 324 -TGVALVFGLLSIGAVAIVGGRSMLVSLFTSIEEVQFYAERMI---SIVALGMPFLGAFF 379 Query: 373 SAL---KGAGDALFPVIVGVLMMWGISVTGAWFFGIVLSWGMGGIWLGKLLDEWLRGFVM 429 +A+ +G+G F +G+ +W + + A+ + S G G+WL L + G + Sbjct: 380 TAMGVARGSGRTAFISALGIARLWLLRIPAAYTLVYIYSLGDMGVWLAMTLSNIIAGTLA 439 Query: 430 IGRWVSRRW 438 I R W Sbjct: 440 IAWVAGRTW 448 >gi|118431584|ref|NP_148157.2| MatE efflux family protein [Aeropyrum pernix K1] Length = 442 Score = 98.6 bits (244), Expect = 3e-22 Identities = 92/413 (22%), Positives = 174/413 (42%), Gaps = 15/413 (3%) Query: 15 LAWPIMVETALRTTLTSVDTFMLARYADEXXXXXXXXXXXXXXXXLIYMMGATGASILVS 74 + WP++V + + VDT+ + E + + G +++ Sbjct: 15 IGWPLVVADSALSIAWIVDTYFVGGLGSESIAAVGAAGYLIWLYMVFSTLVYMGVLVILG 74 Query: 75 QHLGAGDERTAAEIARTALFYNXXXXXXXXXXXXXXXDPLIASLGVDATVGGYARDYLYV 134 Q +G+G+ A L + L+ L + V A +YL V Sbjct: 75 QAIGSGNRGLVERAAGEGLTLSILLSIIVCAAAFAASKQLLVVLAPE--VDQLAWEYLSV 132 Query: 135 YFSCSVFQAMSLLLASLVRSYGYSSIPMYVTFGANLLNVAGNYLVLFGPGGFPVLGVKGV 194 +++L ++ R+ G + +Y + L N A + ++++G G P LGV+G Sbjct: 133 SLLTVALHYVTILYDAVFRALGKTMPILYSSGVFTLANTALDPILIYGRLGAPALGVEGA 192 Query: 195 ALSTVISQAAGMVALFIVVLRRPYLDF----LRGFSANWRHVRNILRIGGPSAGENLSYN 250 A ++V AA ++ L ++V YLD LR S + R+IL +G PS E + + Sbjct: 193 AWASV---AASLLGLLVLVYLSRYLDVGLRPLRPTSVS----RSILALGFPSMVERVVFV 245 Query: 251 LAQMALLYLITPMGTAAIASYTYTVNISRFSFIVSLSLGRASQILVGHRVGAGENDRAFR 310 + + L ++ G A+A++T V I +F+ S+ AS ++VG VGAG + Sbjct: 246 VGNVVYLGSVSRCGADALAAHTIGVRIESLAFLPLFSIATASGVMVGWEVGAGRIAESKS 305 Query: 311 EVLRTTAAAMVSSLLAMGTIALFRMPVIHLLTADEEIVRITSELLLWAVILEFGRPINLV 370 + + L+ +AL V + T D + + + L+ A + E + +V Sbjct: 306 TGWELIKLSSLIGLVVGAALALGGWLVTPIFTGDPRVAWLAALYLVIAGLTEPLLGVVMV 365 Query: 371 VISALKGAGDALFPVIVGVLMMWGISVTGAWFFGIVLSWGMG--GIWLGKLLD 421 ++ AGD P +V + ++ + V A+ ++ G+ G WL +D Sbjct: 366 AGQIIRNAGDTRTPTLVNLGSLYILRVVPAYLLPGLMPTGLCVLGAWLAMGID 418 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.139 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 434,694 Number of Sequences: 1700 Number of extensions: 18968 Number of successful extensions: 90 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 83 Number of HSP's gapped (non-prelim): 2 length of query: 451 length of database: 492,079 effective HSP length: 80 effective length of query: 371 effective length of database: 356,079 effective search space: 132105309 effective search space used: 132105309 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719018|ref|YP_003874550.1| transporter [Spirochaeta thermophila DSM 6192] (350 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.138 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 314,327 Number of Sequences: 1700 Number of extensions: 11977 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 350 length of database: 492,079 effective HSP length: 78 effective length of query: 272 effective length of database: 359,479 effective search space: 97778288 effective search space used: 97778288 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719019|ref|YP_003874551.1| argininosuccinate lyase [Spirochaeta thermophila DSM 6192] (450 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431603|ref|NP_148185.2| fumarate hydratase [Aeropyrum pern... 57 1e-09 >gi|118431603|ref|NP_148185.2| fumarate hydratase [Aeropyrum pernix K1] Length = 444 Score = 56.6 bits (135), Expect = 1e-09 Identities = 78/316 (24%), Positives = 135/316 (42%), Gaps = 38/316 (12%) Query: 103 VHTGRSRNDQVLVALRLYMKDRIYL-LAEVLEGLVRLLFRRAEETAHIPMPGRTHMQIAM 161 V+ +S ND + A+RL + L LE ++ L + A + PGRTH++ A+ Sbjct: 107 VNMSQSSNDVIPTAIRLAAASAVLSELVPSLETIINSLGSAEAKYARVVKPGRTHLRDAL 166 Query: 162 PSSCGLWFASFAXXXXXXXXXXXXXXXXXXQNPLGAAASYGVPLPLDRAYTTRLLGFSRV 221 P + G +F + PLG A G + Y R + Sbjct: 167 PVTFGQEMGAFKDAFSKDLAMVREALEAVLEVPLGGTA-VGTGINAHPEYPRRAVSILAE 225 Query: 222 QNNVLY---ANNSRG----TCEAMVVDACEQVMLTLSKLAQDV-ILFSLPEFGYMKLP-P 272 + + A+ R T AM+ A V + L +L+QD+ +++S P G ++ P Sbjct: 226 KTGIPVKPAASRFRAMRLVTDLAMLTAAVRSVAIDLWRLSQDLRLMYSGPFTGIAEVEIP 285 Query: 273 ELCTGSSIMPQKQNPDSLELLRAKAASVGAWGVQIKGIIRSLPSGYNRDFQETKG----- 327 + GSS+MP K NP +LE A ++ + + + + + +F+ + G Sbjct: 286 QEVPGSSMMPGKVNPVTLE----AAMQAASYAIALDSSL--VQASLLGEFELSMGLPLAG 339 Query: 328 -PFMRAVETTVDSVVMSSRVVEGLRLFP--ERMR--AGFSREIFA----------TDEVY 372 +R E +++ ++ +V G R+ P ERMR A S+ + EV Sbjct: 340 YAAVRQAEIVAEALRKTAGLVIG-RVEPRVERMRELAERSQALITLVAPIIGYEKAAEVS 398 Query: 373 RLVREGRSFRDAYREV 388 R++ EGRS R+A + V Sbjct: 399 RMLYEGRSIREALKAV 414 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 426,526 Number of Sequences: 1700 Number of extensions: 17511 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 2 length of query: 450 length of database: 492,079 effective HSP length: 80 effective length of query: 370 effective length of database: 356,079 effective search space: 131749230 effective search space used: 131749230 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719020|ref|YP_003874552.1| hypothetical protein STHERM_c13380 [Spirochaeta thermophila DSM 6192] (93 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 108,160 Number of Sequences: 1700 Number of extensions: 4255 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 93 length of database: 492,079 effective HSP length: 61 effective length of query: 32 effective length of database: 388,379 effective search space: 12428128 effective search space used: 12428128 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719021|ref|YP_003874553.1| chaperone ClpB [Spirochaeta thermophila DSM 6192] (870 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600971|ref|NP_147497.1| hypothetical protein APE_0790 [Aero... 46 4e-06 >gi|14600971|ref|NP_147497.1| hypothetical protein APE_0790 [Aeropyrum pernix K1] Length = 297 Score = 45.8 bits (107), Expect = 4e-06 Identities = 49/193 (25%), Positives = 98/193 (50%), Gaps = 12/193 (6%) Query: 352 ILRGLKERYEVHHGVRITDEAIVAAAVLSDRYITS-RFLPDKAIDLIDEAASRLKMEIES 410 I+R +ER ++ + V+ E A+ Y+ R L ++ ++DE A +++ E Sbjct: 27 IVRLKEERRKLINEVKALREERRKASREKREYVEKLRSLREERKKILDELA---QLKEER 83 Query: 411 MPTEIDQLDRKILQLTIERQALSKEKDPASQERLKKIEQQLSQLKEERDKLYLKWQNEKK 470 T D+L K QL + R L KE ++ LK+++++L +L+ + L+ + EK+ Sbjct: 84 KKTR-DELVIKRDQLRVLRGLLEKEGGRLAKISLKRLQRRLQELEMMQMTRVLRPEEEKR 142 Query: 471 IIDEIRKLNAEIEDLTIRETQYERQGNLDKAAEIKYGLLPQKRRELEEKTRALERLKG-- 528 +++EI +L IE +R+ + + ++ AE+K L K ++L ++ L + G Sbjct: 143 LVEEISRLEELIE--RVRKAKEQALSTMELQAEVK--ALVIKLKDLNQRIDELRQQAGSV 198 Query: 529 -EESSLLREEVTE 540 EE + L ++ E Sbjct: 199 KEELATLSSKIEE 211 Score = 45.1 bits (105), Expect = 7e-06 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 38/167 (22%) Query: 402 SRLKMEIESMPTEIDQLDRKILQLTIER-------QALSKEKDPASQERLKKIEQQLSQL 454 + K E E + I++L +I++L ER +AL +E+ AS+E+ + +E +L L Sbjct: 7 AEFKKEEEELLKTIEELKEEIVRLKEERRKLINEVKALREERRKASREKREYVE-KLRSL 65 Query: 455 KEERDKLYLKWQNEKKIIDEIRKLNAE----IEDLTIRETQ-------YERQGNLDKAAE 503 +EER KKI+DE+ +L E ++L I+ Q E++G + A+ Sbjct: 66 REER----------KKILDELAQLKEERKKTRDELVIKRDQLRVLRGLLEKEGG--RLAK 113 Query: 504 IKYGLLPQKRRELE--EKTRALERLKGEESSLLREEVT--EEDIARV 546 I L ++ +ELE + TR L+ EE L EE++ EE I RV Sbjct: 114 ISLKRLQRRLQELEMMQMTRV---LRPEEEKRLVEEISRLEELIERV 157 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 806,760 Number of Sequences: 1700 Number of extensions: 35552 Number of successful extensions: 282 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 273 Number of HSP's gapped (non-prelim): 5 length of query: 870 length of database: 492,079 effective HSP length: 85 effective length of query: 785 effective length of database: 347,579 effective search space: 272849515 effective search space used: 272849515 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719022|ref|YP_003874554.1| hypothetical protein STHERM_c13400 [Spirochaeta thermophila DSM 6192] (258 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602074|ref|NP_148620.1| GMP synthase [Aeropyrum pernix K1] 54 3e-09 gi|14602143|ref|NP_148691.1| anthranilate synthase component II ... 44 3e-06 >gi|14602074|ref|NP_148620.1| GMP synthase [Aeropyrum pernix K1] Length = 512 Score = 54.3 bits (129), Expect = 3e-09 Identities = 52/164 (31%), Positives = 72/164 (43%), Gaps = 13/164 (7%) Query: 41 LIEEYLRERGARCASVCLSSGERLPDEIPDV--VVLMGGPMSVHDEERYPWLREEKAFIR 98 LI +RE G V +S + L + +P VVL GGP SV W Sbjct: 22 LIARRIRELGVYSEIVPATSLDALGEALPRAAGVVLSGGPGSV-------WGSRHDEAAA 74 Query: 99 RSIEEGIRLLGVCLGAQLLAEVLGGEVRKARGREIGWFPVYVTPEASGHPWMEGVPPSLM 158 ++ G +LG+C G QLLA+VLGGEV ++ E G V V + G+P Sbjct: 75 MVLQLGKPVLGICYGHQLLAKVLGGEVGRSPLPEFGPTEVEVLDYGI---LLNGLPSRFK 131 Query: 159 AFHWHGEEVTLPPG-ALHLFYNHHTEVQGFLYEDRILGLQFHLE 201 + H + V PPG A L + V R+ G+Q+H E Sbjct: 132 VWMSHYDAVLRPPGEAKVLARTPGSPVAAMELWGRVFGVQWHPE 175 >gi|14602143|ref|NP_148691.1| anthranilate synthase component II [Aeropyrum pernix K1] Length = 196 Score = 44.3 bits (103), Expect = 3e-06 Identities = 47/166 (28%), Positives = 69/166 (41%), Gaps = 37/166 (22%) Query: 69 PDVVVLM---GGPMSVHDEERYPWLREEKAFIRRSIEEGIRLLGVCLGAQLLAEVLGGEV 125 PD +V+ G P++ D R P + E A +LG+CLG Q++ + G +V Sbjct: 48 PDRIVISPGPGNPLNPRDSGRAPDIVREMA-------RNTPVLGICLGHQIIGLLYGAKV 100 Query: 126 RKARGREIG-WFPVYVTPEASGHPWMEGVPPSLMAFHWHGEEVTLPPGALHLFYNHHTEV 184 +A G PV E GH GVP A +H V PP L +V Sbjct: 101 ERAPKPMHGKTSPV----EHYGHKLYRGVPRVFQAMRYHSLAVYDPPEEL--------QV 148 Query: 185 QGFLYEDRIL-----------GLQFHLE--GTPETGEALLTACADE 217 +D+++ G+QFH E GTP GE ++ D+ Sbjct: 149 DSVSLDDKVIMGISHAELPVYGVQFHPESIGTPH-GEVIVRNFLDD 193 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 309,052 Number of Sequences: 1700 Number of extensions: 15121 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 2 length of query: 258 length of database: 492,079 effective HSP length: 75 effective length of query: 183 effective length of database: 364,579 effective search space: 66717957 effective search space used: 66717957 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719023|ref|YP_003874555.1| nucleotidyltransferase [Spirochaeta thermophila DSM 6192] (100 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,656 Number of Sequences: 1700 Number of extensions: 3709 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 100 length of database: 492,079 effective HSP length: 64 effective length of query: 36 effective length of database: 383,279 effective search space: 13798044 effective search space used: 13798044 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719024|ref|YP_003874556.1| nucleotidyltransferase [Spirochaeta thermophila DSM 6192] (80 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,648 Number of Sequences: 1700 Number of extensions: 2948 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 80 length of database: 492,079 effective HSP length: 50 effective length of query: 30 effective length of database: 407,079 effective search space: 12212370 effective search space used: 12212370 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719025|ref|YP_003874557.1| histidinol-phosphate aminotransferase 2 [Spirochaeta thermophila DSM 6192] (355 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431696|ref|NP_148337.2| threonine-phosphate decarboxylase ... 80 8e-17 gi|118431794|ref|NP_148487.2| aspartate aminotransferase [Aeropy... 59 2e-10 gi|14602153|ref|NP_148701.1| aspartate aminotransferase [Aeropyr... 45 4e-06 gi|118431147|ref|NP_147407.2| aspartate aminotransferase [Aeropy... 41 4e-05 >gi|118431696|ref|NP_148337.2| threonine-phosphate decarboxylase [Aeropyrum pernix K1] Length = 354 Score = 80.1 bits (196), Expect = 8e-17 Identities = 85/323 (26%), Positives = 129/323 (39%), Gaps = 20/323 (6%) Query: 16 GASRPGAIKLSSNENPLGPSPLALKALKEASET-IHL-YPDKACTSLKEKLAEVHGLTPK 73 G PGA+ LSS NPLGP P + EA E +H YPD +E +A + + + Sbjct: 4 GRPPPGALDLSSPSNPLGPPPRVDNIILEAVERGVHTRYPDYEYLGFREAVAGFYRIDLE 63 Query: 74 WFVIGNGSDEVMLFIAGAFVERGISVVTSEHTFSEYTFATRVFEGEVRYAPMREGRFALS 133 + NG+ E++ A A R I VV E F ++T +RE S Sbjct: 64 RVIPLNGAAEILPLAAAALRPRSIVVV--EPNFGDHTILALSAGIPCHSVQLREAGDRFS 121 Query: 134 ELAAGIDSSTR------VVFICNPNNPTGTYVSHEELVSFLXXXXXXXXXXXXXAYREYV 187 + S R ++ + NPNNPTG+ + +L L + Sbjct: 122 LEPGAVCSLPRSVVEGSLIVLSNPNNPTGSAAARGDLRE-LAACATLRGALAVVVDESFA 180 Query: 188 EARDFPRTLELVKRHPNLMVLRTFSKIYGLAGLRVGYGIARPEVI-RYVERLKPPFNVNL 246 + L V ++V R+ +K L GLR+G+ + ++ + P+NVN Sbjct: 181 DLSRVESVLGSVPE--GVIVARSLTKTLALQGLRIGFAYTDDAALAARLDMARQPWNVNS 238 Query: 247 LGQVAARAALDDTA-----FVERSRALTREGKAFLYRELSRLGLFAYPSEANFVCFRLGG 301 + + L D A + R+ K LY +S LG Y S+A F+ R Sbjct: 239 IAALLVERLLGDMASEVKGHIARAIEAIEGLKPRLYSAVSALGAKPYSSQAPFILVRHRR 298 Query: 302 SSQEAFEALME-RGVIIRPLDSF 323 + L+E GV IR SF Sbjct: 299 RNPLFARCLLEAAGVYIRDASSF 321 >gi|118431794|ref|NP_148487.2| aspartate aminotransferase [Aeropyrum pernix K1] Length = 405 Score = 58.5 bits (140), Expect = 2e-10 Identities = 67/279 (24%), Positives = 109/279 (39%), Gaps = 30/279 (10%) Query: 70 LTPKWFVIGNGSDEVMLFIAGAFVERGISVVTSEHTFSEYTFATRVFEGEVRYAPMREG- 128 ++P+ + G+ + ++ G V+ + ++ Y ++F Y PM+ Sbjct: 95 VSPEEVIATTGAKTAIFLGMALYLRPGDEVIIPDPSYYAYAQVAKLFGARPVYVPMKFEP 154 Query: 129 ----RFALSELAAGIDSSTRVVFICNPNNPTGTYVSHEELVSFLXXXXXXXXXXXXXAYR 184 RF + + + TR++ + NP+NPTG+ +++ + Sbjct: 155 GLGFRFDIEGIERAVSEKTRMIVVNNPHNPTGSVFPPDQVEAIHDIARRRGLIILADEIY 214 Query: 185 E---YVEARDFPRTLELVKRHPNLMVLRTFSKIYGLAGLRVGYGIARPEVIRYVERLK-- 239 + Y E + F TL L NL+ + FSK + + G R+GY + R EVI L Sbjct: 215 DNFLYTE-KPFKSTLSLPDWRENLVYVNGFSKTFSMTGWRLGYVVLRREVIPKALDLAVT 273 Query: 240 ----PPFNVNLLGQVAARAALDDT-AFVERSRALTREGKAFLYRELSRL-GLFAYPSEAN 293 PP G A R VE R+ R LY LS+ G+ Y E Sbjct: 274 IYSCPPSIAQKAGVAALRGDWGPVREMVEEFRSRAR----ILYDILSQAEGIEPYLPEGA 329 Query: 294 FVCF-RLGG--------SSQEAFEALMERGVIIRPLDSF 323 F F R+ G Q A + L GV++ P SF Sbjct: 330 FYMFPRVAGLLRKTGLSVEQLAEKLLYSYGVLVLPGTSF 368 >gi|14602153|ref|NP_148701.1| aspartate aminotransferase [Aeropyrum pernix K1] Length = 397 Score = 44.7 bits (104), Expect = 4e-06 Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 26/223 (11%) Query: 144 RVVFICNPNNPTGTYVSHEELVSFLXXXXXXXXXXXXXAYREYVE--ARDFPRTLE-LVK 200 R VFI NPNNPTG+ + L +E P LE ++ Sbjct: 171 RAVFITNPNNPTGSVAGPKALGEIAAEAARTGSILVFDELYRGLEHSTEPAPTVLEPALE 230 Query: 201 RHPNLMVLRTFSKIYGLAGLRVGYGIARPEVIR--------YVERLKPPFNVNLLGQVAA 252 + + + + SK+YGL GLR+G+ A +R Y P + ++ Q+ Sbjct: 231 QGAHAISVSGLSKVYGLPGLRIGWAAATSRRLRDRMWMVKDYTTISPPKPSEHIAEQILE 290 Query: 253 RAALDDTAFVERSRALTREG--------KAFLYRELSRLGLFAYPSEANFVCFRLGGSSQ 304 + A ER R + F +L R AY V +G + Sbjct: 291 KGVWKKLA--ERGRRIVLSNLEILEDLTTRFRTAKLWRPDAGAYA----LVETTVGDTLS 344 Query: 305 EAFEALMERGVIIRPLDSFGLPGWMRVTVGTPDQNEAFIEALS 347 A++ +++ P + F LPG +R+ +G + E+F ++++ Sbjct: 345 FAYKLYQTHSILVNPGECFKLPGTIRLGLG-HENRESFKKSVA 386 >gi|118431147|ref|NP_147407.2| aspartate aminotransferase [Aeropyrum pernix K1] Length = 401 Score = 41.2 bits (95), Expect = 4e-05 Identities = 64/268 (23%), Positives = 103/268 (38%), Gaps = 27/268 (10%) Query: 59 SLKEKLAEVHG--LTPKWFVIGNGSDEVMLFIAGAFVERGISVVTSEHTFSEYTFATRVF 116 ++ E LA + G + P ++ G E M +E G V+ + T+ Y Sbjct: 81 AIAEDLAALGGPRMEPDDILVTAGGQEAMFATLSTILEPGDKVILMDPTYFGYRPIVEYL 140 Query: 117 EGEVRY--APMREGRFALSE-LAAGIDSSTRVVFICNPNNPTGTYVSHE--ELVSFLXXX 171 G V + AP G E L + V + +P+NPTG +S E +LV+ L Sbjct: 141 GGRVEWVRAPPSLGFQPDEERLKEAFTRDVKAVVLVSPDNPTGRLLSTESAKLVADLAVD 200 Query: 172 XXXXXXXXXXAYREYVEARDFPRTLELVKRHPNLMVLRTFSKIYGLAGLRVGYGIARPEV 231 AY+ V + +L N + + TFSK G G R+GY + Sbjct: 201 TGAWIVYDE-AYKTLVFEGEHVYLYKLAP--DNTISINTFSKDPGFPGWRLGYLYGPGWI 257 Query: 232 IRYVERLK------PPFNVNLLGQVAARAALDD----TAFVERSRALTR---EGKAFLYR 278 + + + PP + QVAA+ L+D +E +R + E A Sbjct: 258 VGKIRLVSEELVYCPP----SIAQVAAKIYLEDREGRLRHLEYAREFLKTRMEAMAGALE 313 Query: 279 ELSRLGLFAYPSEANFVCFRLGGSSQEA 306 E+ +FA P + F+ L +A Sbjct: 314 EMLPEAVFARPGGSMFITVDLSSYLSKA 341 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 342,369 Number of Sequences: 1700 Number of extensions: 14664 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 4 length of query: 355 length of database: 492,079 effective HSP length: 78 effective length of query: 277 effective length of database: 359,479 effective search space: 99575683 effective search space used: 99575683 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719026|ref|YP_003874558.1| hypothetical protein STHERM_c13440 [Spirochaeta thermophila DSM 6192] (293 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.139 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 257,540 Number of Sequences: 1700 Number of extensions: 10188 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 0 length of query: 293 length of database: 492,079 effective HSP length: 76 effective length of query: 217 effective length of database: 362,879 effective search space: 78744743 effective search space used: 78744743 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719027|ref|YP_003874559.1| hypothetical protein STHERM_c13450 [Spirochaeta thermophila DSM 6192] (412 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 369,575 Number of Sequences: 1700 Number of extensions: 14627 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 412 length of database: 492,079 effective HSP length: 79 effective length of query: 333 effective length of database: 357,779 effective search space: 119140407 effective search space used: 119140407 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719028|ref|YP_003874560.1| LemA family protein [Spirochaeta thermophila DSM 6192] (202 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.131 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 159,419 Number of Sequences: 1700 Number of extensions: 5615 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 202 length of database: 492,079 effective HSP length: 73 effective length of query: 129 effective length of database: 367,979 effective search space: 47469291 effective search space used: 47469291 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719029|ref|YP_003874561.1| hypothetical protein STHERM_c13480 [Spirochaeta thermophila DSM 6192] (256 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.135 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 201,496 Number of Sequences: 1700 Number of extensions: 8514 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 256 length of database: 492,079 effective HSP length: 75 effective length of query: 181 effective length of database: 364,579 effective search space: 65988799 effective search space used: 65988799 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719030|ref|YP_003874562.1| long-chain-fatty-acid-CoA ligase [Spirochaeta thermophila DSM 6192] (102 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.143 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 114,150 Number of Sequences: 1700 Number of extensions: 5195 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 102 length of database: 492,079 effective HSP length: 64 effective length of query: 38 effective length of database: 383,279 effective search space: 14564602 effective search space used: 14564602 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719031|ref|YP_003874563.1| cupin [Spirochaeta thermophila DSM 6192] (107 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 134,681 Number of Sequences: 1700 Number of extensions: 6159 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 107 length of database: 492,079 effective HSP length: 65 effective length of query: 42 effective length of database: 381,579 effective search space: 16026318 effective search space used: 16026318 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719032|ref|YP_003874564.1| transporter [Spirochaeta thermophila DSM 6192] (341 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.133 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 326,976 Number of Sequences: 1700 Number of extensions: 14129 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 341 length of database: 492,079 effective HSP length: 77 effective length of query: 264 effective length of database: 361,179 effective search space: 95351256 effective search space used: 95351256 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719033|ref|YP_003874565.1| hypothetical protein STHERM_c13520 [Spirochaeta thermophila DSM 6192] (181 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.332 0.148 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 177,019 Number of Sequences: 1700 Number of extensions: 7708 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 181 length of database: 492,079 effective HSP length: 71 effective length of query: 110 effective length of database: 371,379 effective search space: 40851690 effective search space used: 40851690 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719034|ref|YP_003874566.1| transporter [Spirochaeta thermophila DSM 6192] (432 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601866|ref|NP_148407.1| hypothetical protein APE_2133 [Aero... 64 7e-12 gi|118431920|ref|NP_148683.2| TRAP transporter membrane-spanning... 50 1e-07 >gi|14601866|ref|NP_148407.1| hypothetical protein APE_2133 [Aeropyrum pernix K1] Length = 731 Score = 63.9 bits (154), Expect = 7e-12 Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 1/137 (0%) Query: 66 FILAGELMGQGGISKRLIKFSNLIVGRLPGGLAQVNILASMFFGGISGSAVADISSIGTI 125 F+ + + G+ K + + GR PGG A+V +++S G ISGS+VA+ + GT Sbjct: 224 FLFFSSFLDKLGVGKYITDLMTALFGRKPGGPAKVAVVSSAMMGTISGSSVANTLTTGTF 283 Query: 126 LIPMMKENKYDEDFSVAITVTSACQGIIIPPSHNMIIFSLAA-GGVSIGRLFLGGYLPGV 184 IP MK + + + AI ++ G ++PP F +A G+ G + + LP + Sbjct: 284 TIPAMKRAGFPPEVAGAIEPVASTGGQLMPPIMGAAAFIMAEFVGIPYGMVVIAALLPAI 343 Query: 185 ILGLALMIITHFISIKR 201 + ++ + S KR Sbjct: 344 LYFYSIYVFVDKESKKR 360 >gi|118431920|ref|NP_148683.2| TRAP transporter membrane-spanning component [Aeropyrum pernix K1] Length = 600 Score = 50.1 bits (118), Expect = 1e-07 Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 16/160 (10%) Query: 36 TGIYLKVPLMAVVQQMVHGIKSFSLLAIPFFILAGELMGQGGISKRLIKFSNLIVGRLPG 95 TG++ K+P +A L I F+L + G +I+ +G P Sbjct: 168 TGVFEKLPQLA-------------LTLIGAFMLFISIAQAFGAVDSVIRLVIGALGSRPR 214 Query: 96 GLAQVNILASMFFGGISGSAVADISSIGTILIPMMKENKYDEDFSVAITVTSACQGIIIP 155 L Q ++ SM +SGS A+ +S G+I IP+MK+ + AI S+ G ++P Sbjct: 215 LLPQAAVVGSMVIAMVSGSGAANAASTGSITIPLMKKAGMPPVKAAAIETASSIGGQLMP 274 Query: 156 PSHNMIIFSLAAG-GVSIGRLFLGGYLPGVI--LGLALMI 192 P + F +A GVS + G+ P +I +GLA + Sbjct: 275 PIMGISAFVMADYLGVSYFDVVARGWAPALIYYIGLAAAV 314 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.143 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 319,257 Number of Sequences: 1700 Number of extensions: 12602 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 4 length of query: 432 length of database: 492,079 effective HSP length: 79 effective length of query: 353 effective length of database: 357,779 effective search space: 126295987 effective search space used: 126295987 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719035|ref|YP_003874567.1| hypothetical protein STHERM_c13540 [Spirochaeta thermophila DSM 6192] (199 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 201,473 Number of Sequences: 1700 Number of extensions: 8936 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 199 length of database: 492,079 effective HSP length: 72 effective length of query: 127 effective length of database: 369,679 effective search space: 46949233 effective search space used: 46949233 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719036|ref|YP_003874568.1| hypothetical protein STHERM_c13550 [Spirochaeta thermophila DSM 6192] (343 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 288,455 Number of Sequences: 1700 Number of extensions: 11532 Number of successful extensions: 103 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103 Number of HSP's gapped (non-prelim): 0 length of query: 343 length of database: 492,079 effective HSP length: 78 effective length of query: 265 effective length of database: 359,479 effective search space: 95261935 effective search space used: 95261935 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719037|ref|YP_003874569.1| hypothetical protein STHERM_c13560 [Spirochaeta thermophila DSM 6192] (186 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.143 0.485 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 186,176 Number of Sequences: 1700 Number of extensions: 7763 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 186 length of database: 492,079 effective HSP length: 72 effective length of query: 114 effective length of database: 369,679 effective search space: 42143406 effective search space used: 42143406 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719038|ref|YP_003874570.1| hypothetical protein STHERM_c13570 [Spirochaeta thermophila DSM 6192] (165 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 187,697 Number of Sequences: 1700 Number of extensions: 8474 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 165 length of database: 492,079 effective HSP length: 70 effective length of query: 95 effective length of database: 373,079 effective search space: 35442505 effective search space used: 35442505 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719039|ref|YP_003874571.1| hypothetical protein STHERM_c13580 [Spirochaeta thermophila DSM 6192] (216 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 233,484 Number of Sequences: 1700 Number of extensions: 11024 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 216 length of database: 492,079 effective HSP length: 73 effective length of query: 143 effective length of database: 367,979 effective search space: 52620997 effective search space used: 52620997 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719040|ref|YP_003874572.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (127 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 140,025 Number of Sequences: 1700 Number of extensions: 6153 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 127 length of database: 492,079 effective HSP length: 67 effective length of query: 60 effective length of database: 378,179 effective search space: 22690740 effective search space used: 22690740 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719041|ref|YP_003874573.1| hypothetical protein STHERM_c13600 [Spirochaeta thermophila DSM 6192] (242 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.143 0.463 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 227,401 Number of Sequences: 1700 Number of extensions: 9262 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 0 length of query: 242 length of database: 492,079 effective HSP length: 74 effective length of query: 168 effective length of database: 366,279 effective search space: 61534872 effective search space used: 61534872 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719042|ref|YP_003874574.1| ABC transporter ATP-binding protein [Spirochaeta thermophila DSM 6192] (281 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 97 5e-22 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 93 9e-21 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 92 2e-20 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 89 9e-20 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 89 9e-20 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 87 6e-19 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 87 6e-19 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 84 3e-18 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 81 3e-17 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 80 6e-17 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 76 8e-16 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 75 1e-15 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 73 7e-15 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 71 3e-14 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 70 5e-14 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 70 8e-14 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 69 1e-13 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 66 9e-13 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 66 1e-12 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 65 1e-12 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 65 2e-12 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 65 2e-12 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 64 3e-12 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 61 3e-11 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 61 3e-11 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 61 4e-11 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 60 5e-11 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 60 5e-11 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 60 6e-11 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 59 2e-10 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 58 2e-10 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 57 4e-10 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 57 4e-10 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 56 9e-10 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 55 2e-09 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 55 3e-09 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 53 1e-08 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 52 1e-08 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 51 3e-08 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 48 2e-07 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 44 5e-06 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 97.1 bits (240), Expect = 5e-22 Identities = 72/215 (33%), Positives = 103/215 (47%), Gaps = 33/215 (15%) Query: 24 LSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGVGEVFGIPSERRDPSVLAR---- 79 + L + G + LLG NGAGKTTL+K+++ L PD G V G R +V +R Sbjct: 32 VDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANNVRSRIGVV 91 Query: 80 ----------------LWFLPEELPSYSIPAEDYACSTGAFYPGYRHDELLDLCDQLEVD 123 LWF + Y IP + R ELL++ LE Sbjct: 92 LGGERALYWRLSGWDNLWFFSQ---LYGIPPREAK---------RRVKELLEIVG-LEEW 138 Query: 124 VRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYAAEGRTF 183 ++ S G +++ +A L +LLLDEPT GLD + R+VR +I R EGRT Sbjct: 139 AHVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTV 198 Query: 184 LISTHQVRDLEHLIDPVIILHKGRIVLHASMDELQ 218 L++TH + + E L D V I+ KGRIV ++L+ Sbjct: 199 LLTTHYMVEAEELSDRVAIISKGRIVAEGPPEDLK 233 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 92.8 bits (229), Expect = 9e-21 Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 12/207 (5%) Query: 24 LSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGVGEVFGIPSERRDPSVLARLWFL 83 +S + GE+ LLG NGAGKTT +K+++ L P G + G R +V + + Sbjct: 25 VSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWIAGYSIVREPGNVRRVIGLV 84 Query: 84 PEELPSYS---------IPAEDYACSTGAFYPGYRHDELLDLCDQLEVDVRQKLTRLSYG 134 P++L + I A Y + R E+LD D +E R+ T S G Sbjct: 85 PQDLTADDEMSGWDNVYIQARLYGLPSSEARERTR--EVLDYLDLMEAAHRRVAT-YSGG 141 Query: 135 QQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYAAEGRTFLISTHQVRDLE 194 ++K +A +L +L LDEPT GLD+ S+R + R I T L++TH + + E Sbjct: 142 MRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLKRSAVTILLTTHYMEEAE 201 Query: 195 HLIDPVIILHKGRIVLHASMDELQERL 221 L D V I+ +GRIV + +EL+ R+ Sbjct: 202 MLSDRVAIIDRGRIVAEGTPEELKARV 228 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 91.7 bits (226), Expect = 2e-20 Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 6/233 (2%) Query: 2 EPVVHIEGLTFGYTSRSPLFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGV 61 +P V EG+ R L +++SL++ G V G++G NGAGKTTL + + G D G Sbjct: 6 QPAVEAEGVWKRLGGRWVL-KDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGR 64 Query: 62 GEVFGIPSERRDPSVLARLWFLPEELPSY-SIPAEDYACSTGAFYPGYRHDELLDLCDQL 120 + G P ER S+ R+ +LPE+ Y ++ ++ + Y + L+ +L Sbjct: 65 VALLGEPVERAGGSLFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLEGYLEEASRL 124 Query: 121 E---VDVRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYA 177 + +++ S G +++ +A LA L +LDEPT GLD +RRL+ Y+ Sbjct: 125 SGLGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYS 184 Query: 178 -AEGRTFLISTHQVRDLEHLIDPVIILHKGRIVLHASMDELQERLSFVVLPEA 229 G T L+S+H + ++E + + ++ GRIV S E R L EA Sbjct: 185 ERHGVTVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGEAVRRTGASSLEEA 237 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 89.4 bits (220), Expect = 9e-20 Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 7/218 (3%) Query: 19 PLFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGVGEVFGI-PSERRDPSVL 77 P+ + +SLS++ GE+ L G NGAGKTT L+++ G L D G V G+ P V Sbjct: 28 PVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPWGGGFERVK 87 Query: 78 ARLWFLPEELPSYS-IPAEDYACSTGAFYPGYRH-DELLDLCDQLEVDVRQKLTR----L 131 + +LPE+ Y + + Y G+R +EL++ R+ L R Sbjct: 88 GEVGYLPEDASVYERLTGMENILFYARLYSGWRDVEELVENAVFYSGLSREDLARRAGGY 147 Query: 132 SYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYAAEGRTFLISTHQVR 191 S G +++ L L + L++LDEPT+G+D + ++++++ + EGR L++TH + Sbjct: 148 SKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSREGRAILVTTHDLA 207 Query: 192 DLEHLIDPVIILHKGRIVLHASMDELQERLSFVVLPEA 229 E + D V I+H G V L E L +A Sbjct: 208 LAEEIADRVTIIHGGSTVASGPPYRLVEEYCGETLEDA 245 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 89.4 bits (220), Expect = 9e-20 Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 9/207 (4%) Query: 24 LSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGVGEV--FGIPSERRDPSVLARLW 81 +S S+ GE+ LG NGAGKTT +++++ L PD G V F + ER + + Sbjct: 31 VSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAGFDVVKERWEVRKRIGVM 90 Query: 82 FLPEELPSYSIPAEDYACSTGAFYP------GYRHDELLDLCDQLEVDVRQK-LTRLSYG 134 E + + + G Y R E+LDL ++ K +S G Sbjct: 91 LSVERGFYWKLTGRENLYYFGRIYGIPQGELKSRIKEVLDLVGLTDLGGADKPFEEMSLG 150 Query: 135 QQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYAAEGRTFLISTHQVRDLE 194 + + LA L +L+LDEPT GLD S R +R +I A+EGRT I+TH + + E Sbjct: 151 MKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSLASEGRTIFITTHNMVEAE 210 Query: 195 HLIDPVIILHKGRIVLHASMDELQERL 221 + D V I+ GRI + + DEL+ R+ Sbjct: 211 MISDRVGIIIGGRIAMEGTPDELKRRV 237 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 86.7 bits (213), Expect = 6e-19 Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 12/206 (5%) Query: 24 LSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGVGEVFGIP---SERRDPSVLARL 80 +S S+ GE A ++G NG+GKTTLL++++G L P G V G R+ L + Sbjct: 23 VSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVCGYDVWGDGWREARGL--I 80 Query: 81 WFLPEELP-SYSIPAEDYACSTGAFY---PGYRHDELLDLCDQL--EVDVRQKLTRLSYG 134 F P++ P + + +Y G PG E + + L E + + + RLS G Sbjct: 81 GFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREARRVLEMLGFEDVLGRVVARLSGG 140 Query: 135 QQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYAAEGRTFLISTHQVRDLE 194 Q++ +A ALA+ +++LDEP +GLD+ ++ + + R A +GRT L S+H ++ E Sbjct: 141 QRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASL-RKAFKGRTVLFSSHDPQEAE 199 Query: 195 HLIDPVIILHKGRIVLHASMDELQER 220 D V+I+H+GR+ EL +R Sbjct: 200 AESDRVLIMHRGRLAAWGKPRELIQR 225 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 86.7 bits (213), Expect = 6e-19 Identities = 72/248 (29%), Positives = 114/248 (45%), Gaps = 13/248 (5%) Query: 1 MEPVVHIEGLTFGYTSRSPLFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEG 60 M V+ +EGL Y S L + +S S+ GEV G LG NGAGKTT ++++ G P G Sbjct: 1 MGVVIEVEGLVKRYGSVEAL-RGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSG 59 Query: 61 VGEVFGIPSERRDPS-VLARLWFLPEELPSYSIPAE----DYACSTGAFYPGYRHDELLD 115 VFG+ S V R+ ++P E Y + DY C G + + Sbjct: 60 SARVFGVELYNPGASGVRRRVGYVPGEFEFYGGVSGGRMLDYWCR---LVGGCSRGVVRE 116 Query: 116 LCDQLEVDVRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPR 175 L + + + + + S G ++ L A + L+++DEPT GLD ++ +V + Sbjct: 117 LLEAFPLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDFVRS 176 Query: 176 YAAEGRTFLISTHQVRDLEHLIDPVIILHKGRIVLHASMDELQERLSFVVLPEA----PP 231 A EG T S+H + +++ + D V +L G +V + L + VV P Sbjct: 177 KAREGVTVFFSSHVLSEVQRVADRVGLLRSGVLVALEDVSSLLRKSGKVVKARVSKNLSP 236 Query: 232 DALYVEKV 239 D L V+ V Sbjct: 237 DRLAVDGV 244 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 84.3 bits (207), Expect = 3e-18 Identities = 71/212 (33%), Positives = 111/212 (52%), Gaps = 15/212 (7%) Query: 33 VAGLLGENGAGKTTLLKLIAGELFPDEGVGEVFGI-PSERRDPSVLARLWFLPE--ELPS 89 + G+LG NGAGKTTLLK I G + P G V G+ P +L R+ ++PE +P Sbjct: 31 ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVEGVNPRSPGFEKLLPRIGYVPELPVVPL 90 Query: 90 YSIPAEDYACSTGAFYPGYRHDEL-LDLCDQLEV-----DVRQKLTRLSYGQQKKFFLAF 143 ++ P T A GY E + + LEV + + +LS G +K+ +A Sbjct: 91 WTTPC--ILLETLARLEGYTSVEARVRAREALEVVGLAGECETPIGKLSKGARKRVLVAQ 148 Query: 144 ALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYAAEGRTFLISTHQVRDLEHLIDPVIIL 203 A LL+LDEP +GLD +VR L+ A EG T ++S+H +R+LE + V++L Sbjct: 149 AFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAREGATVIVSSHILRELEDIATHVLVL 208 Query: 204 HKGRIVLHASMDELQERLS---FVVLPEAPPD 232 ++ + S++EL+ LS ++L A P+ Sbjct: 209 KTDQL-FYGSIEELRAWLSGTPRIILSVAEPE 239 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 81.3 bits (199), Expect = 3e-17 Identities = 71/219 (32%), Positives = 104/219 (47%), Gaps = 21/219 (9%) Query: 5 VHIEGLTFGYTSRSPLFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGVGEV 64 V +EG+ Y + P+ + +S SL PG + LLG NG+GKTTLL+L+AG + P G EV Sbjct: 6 VRLEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEV 65 Query: 65 FGIPSER---------RDPSVLARLWFLPEELPSYSIPAEDYACSTGAFYPGYRHDELLD 115 G P R P V RL + L Y S G + +E+L Sbjct: 66 CGSPPGRVRRMLGYAPASPEVDPRLKAVEVAL------LYRYGVSEGVAWGRRDWEEVLA 119 Query: 116 LCDQLEVD--VRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLI 173 ++ V ++ LS GQ++ LA LA L LLDEP + LD+ + R+V ++ Sbjct: 120 ALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVL 179 Query: 174 PRYAAEGRTFLISTHQVRDLEHLIDPVIILHKGRIVLHA 212 + GR ++ T D VI+L +G +LHA Sbjct: 180 --RSLRGRATIVYTTHDPLAAMAADSVIMLREG--LLHA 214 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 80.1 bits (196), Expect = 6e-17 Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 13/230 (5%) Query: 1 MEPVVHIEGLTFGYTSRSPLFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPD-- 58 M P++++ + Y + + LSLS+ G + L+G NGAGKTTLLK ++G + + Sbjct: 1 MGPLLNVSNVEIMYHPFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERG 60 Query: 59 ---EGVGEVFGIPSERRDPSVLAR---LWFLPEELPSYSIPAEDYACSTGAFYPGYRHDE 112 G ++ G R+P +AR ++ + + E+ S A+ G D+ Sbjct: 61 RVTRGSIQLEGEDITNREPDEIARRGVIYVMEGRRIFKELTTEENLVSV-AYAAGASRDD 119 Query: 113 L---LDLCDQLEVDVRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQV 169 + L +L+ + +K LS G+Q+ +A AL LL+LDEP+ GL Q+ Sbjct: 120 IRSVLSYFPRLKERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQI 179 Query: 170 RRLIPR-YAAEGRTFLISTHQVRDLEHLIDPVIILHKGRIVLHASMDELQ 218 I + EG T L++ R + D ++ GRIVL S +EL+ Sbjct: 180 YATIKMLHREEGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEELR 229 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 76.3 bits (186), Expect = 8e-16 Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 17/228 (7%) Query: 24 LSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGVGEVF-------GIPSERRDPSV 76 +S S + +LG +G GKTT+LK+IAG L P G VF G+P ERR Sbjct: 24 VSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRG--RVFFGGVDYTGLPPERRSVGF 81 Query: 77 LARLWFLPEELPSYSIPAEDYACSTGAFYPGYRHDELLDLCDQLEVD-----VRQKLTRL 131 + + L + Y A + F G ++ + + + + +++T L Sbjct: 82 VFQDLALFPHMTVYDNVA--FGLRARGFSGGEVRRQVEWALETVGLTPPREFMGRRVTGL 139 Query: 132 SYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYAAE-GRTFLISTHQV 190 S GQQ++ LA A+A P+LLLDEP + LD ++++ + R + G T + TH Sbjct: 140 SGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQRKLGSTMIYVTHDQ 199 Query: 191 RDLEHLIDPVIILHKGRIVLHASMDELQERLSFVVLPEAPPDALYVEK 238 + L D ++I+ GRIV H + E+ R + V + DA + K Sbjct: 200 WEAMELADTLVIMRDGRIVQHGTPSEVYTRPANVYVATFFGDANIIPK 247 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 75.5 bits (184), Expect = 1e-15 Identities = 71/239 (29%), Positives = 111/239 (46%), Gaps = 15/239 (6%) Query: 1 MEPVVHIEGLTFGYTSRSPLFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEG 60 M+ V+ G+ Y + P+ + L + GE GL+G NGAGKTTL+K+ G D G Sbjct: 1 MDTVLEARGVVKKYRGQ-PVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGG 59 Query: 61 VGEVFGI-----PSERRDPSVLARLWFLPEELPSYSIPAEDYACSTGAFYPG--YRHDEL 113 + G+ P R V+ F LPS S+P ++ S A R D Sbjct: 60 RVLLNGLDPWREPRAREGVGVV----FERPNLPS-SMPVVEFLESAAAIIGSSPSRVDWA 114 Query: 114 LDLCDQLEVDVRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLI 173 + LE + +LS G +++ +A AL L+ DEPT+ LD +R+V RL+ Sbjct: 115 IRAAG-LEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLL 173 Query: 174 PRYAAE-GRTFLISTHQVRDLEHLIDPVIILHKGRIVLHASMDELQERLSFVVLPEAPP 231 R E G + L+S+H + +L + + +L GR+ S ++L R L + P Sbjct: 174 ARLNREHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDLFRRAGLARLRTSNP 232 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 73.2 bits (178), Expect = 7e-15 Identities = 64/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%) Query: 5 VHIEGLTFGYTSRSPLFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGVGEV 64 V + G+ Y + +LR GEV LLGENGAGKTTL++++ GE+ P G V Sbjct: 13 VAMRGIVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYV 72 Query: 65 FGIPSERRDP-----SVLARLW--FLPEELPSYSIPAEDYACSTGAFYPGYRHDELLDLC 117 +G R P + +A ++ F E + Y S G R L+ Sbjct: 73 WGRKVSWRGPWDAIRNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARR-RTLETA 131 Query: 118 DQ--LEVDVRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPR 175 ++ LE+D+ + + L G +++ + AL+ G +L+LDEPT+ L ++ + Sbjct: 132 ERLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLRL 191 Query: 176 YAAEGRTFLISTHQVRDLEHLIDPVIILHKGRI--VLHASMDELQERLSFVVLPEAPP 231 G + + TH++ ++ + D V +L +GR+ V+ +E L+ +++ PP Sbjct: 192 LKDMGVSVVYITHKLGEVVRVADRVTVLRRGRVSAVIEDVGRTSEEELARLMVGTLPP 249 Score = 57.8 bits (138), Expect = 3e-10 Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 17/202 (8%) Query: 22 QELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGVGEVFGIPSERRDPSVLARLW 81 +E+SL +R GE+ G+ G G G+ L+ I G P G EV G E A Sbjct: 279 REVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEVQGRRIEGSLDFYRAGGG 338 Query: 82 FLPEELPSYSIPAEDYACSTGAFYPGY--------RHDELLDLCDQLEVDVR-------Q 126 ++ + + A DY+ + + Y R L DL +L R Sbjct: 339 YIAGDRGK--VLAMDYSVAENIAFLYYTASKTLLLRRSRLEDLFRRLVERFRLVARSPWT 396 Query: 127 KLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYAAEGRTFLIS 186 + RLS G Q+K + + G LL+ PT GLDI + VR L+ A +G L+ Sbjct: 397 PVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTSFVRNLLSELARQGAGILLV 456 Query: 187 THQVRDLEHLIDPVIILHKGRI 208 + + ++ L D + ++ GR+ Sbjct: 457 STDLDEILELSDRIYVMSGGRV 478 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 71.2 bits (173), Expect = 3e-14 Identities = 68/227 (29%), Positives = 102/227 (44%), Gaps = 35/227 (15%) Query: 5 VHIEGLTFGYTSRSP---LFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGV 61 V +EG+ Y SR +E+SLS+ GEV ++G +G+GKTTLL +IAG P+ G Sbjct: 11 VVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGR 70 Query: 62 GEVFGIPSERRDPSVLARLWFLPEELPSYSIPAEDYACSTGAFYPGY------------- 108 V G EEL + + Y P Sbjct: 71 VIVDGFEVSSAGG----------EELRRFRLERVGYVFQQHNLIPTLTALENILLPMALA 120 Query: 109 ------RHDELLDLCDQLEVDVRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLD 162 R ELL L R+ LS G+Q++ +A ALA P+++ DEPT LD Sbjct: 121 GKANRLRGQELLRRVG-LGGKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELD 179 Query: 163 IPS-KRQVRRLIPRYAAEGRTFLISTHQVRDLEHLIDPVIILHKGRI 208 I + +R VR L+ + G+T +++TH R + + D V ++ GR+ Sbjct: 180 IATGERIVRILLEEAHSRGKTVVLTTHDPR-VARMADRVAVIEDGRL 225 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 70.5 bits (171), Expect = 5e-14 Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 12/211 (5%) Query: 7 IEGLTFGYTSRSPLFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGVGEVFG 66 +E L Y + ++ S G V LLGENGAGKTTLLK I G + P +G V G Sbjct: 7 VEDLDVVYPGGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDG 66 Query: 67 IPSERRDP--SVLARLWFLPEELPSY-SIPA-EDYACS--TGAFYPGYRHDELLDLCDQ- 119 + P S+ + ++ + P Y I A ED A + G R + L + Sbjct: 67 YELRPKGPGDSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTM-LAEAS 125 Query: 120 ----LEVDVRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPR 175 L +D + L + + ++++ + ALA G +LLDEPT L ++ R Sbjct: 126 EALGLNIDPDRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGR 185 Query: 176 YAAEGRTFLISTHQVRDLEHLIDPVIILHKG 206 AA G L+ TH++ + D ++IL KG Sbjct: 186 LAASGAAVLLVTHRIGEAMEHADRLVILRKG 216 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 69.7 bits (169), Expect = 8e-14 Identities = 66/233 (28%), Positives = 114/233 (48%), Gaps = 22/233 (9%) Query: 5 VHIEGLTFGYTSRSPLFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAG--ELFPDEGV- 61 V + GL T + + + +S +PG V ++G +G+GK+TL+++I +L P V Sbjct: 6 VRVSGLNVWITDKH-ILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVE 64 Query: 62 GEVF--GIPSERRDPSVLARLWFL----PEELPSYSIPAEDYACSTGAFYPGYRHDELLD 115 GEV+ + + DP + R + P P +I E+ A EL + Sbjct: 65 GEVWINNMNVMKEDPYNIRRYTGMVFQEPNPFPHMTI-YENVAIGPKLHGLAKNKKELDE 123 Query: 116 LCD------QLEVDVRQKLT----RLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPS 165 + + L +V+ +L+ +LS GQ+++ LA ALA +LLLDEPT +D S Sbjct: 124 IVEWALKMAHLWDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVS 183 Query: 166 KRQVRRLIPRYAAEG-RTFLISTHQVRDLEHLIDPVIILHKGRIVLHASMDEL 217 ++ + I YA E T +I TH + + D ++ L++GR++ + EL Sbjct: 184 TVKIEQSIVEYAKEEMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKEL 236 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 69.3 bits (168), Expect = 1e-13 Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 16/232 (6%) Query: 1 MEPVVHIEGLTFGYTSRSPLFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEG 60 M ++ + GL Y+ L + + +SL GE ++G +G+GK+TLLK I + PD G Sbjct: 1 MARLLEVRGLVVSYSGEKVL-KGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSG 59 Query: 61 VGEVFGIPSERRDPSVLA----RLWFLPEE---------LPSYSIPAEDYACSTGAFYPG 107 G+ R S L ++ +LP+ L + + P E A Sbjct: 60 SIVFRGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEK-ALGLSRRDAE 118 Query: 108 YRHDELLDLCDQLEVDVRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKR 167 R + L + +E + RLS GQQ++ LA ALA +LLLDEPT+ LD S+ Sbjct: 119 ERAVKYLSMLG-IEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRA 177 Query: 168 QVRRLIPRYAAEGRTFLISTHQVRDLEHLIDPVIILHKGRIVLHASMDELQE 219 V + R A G+ ++ TH+ + D + + G + EL E Sbjct: 178 DVLEALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSELVE 229 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 66.2 bits (160), Expect = 9e-13 Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 27/197 (13%) Query: 29 RPGEVAGLLGENGAGKTTLLKLIAGELFPDEGVGEVFGIPSERRDPSVLARLWFLPEELP 88 R G+V GLLG NG GKTT L+++AGEL P+ +G V G E +L R F EL Sbjct: 104 REGQVVGLLGRNGTGKTTALRILAGELKPN--LGRVEG--GEPEWDEILKR--FRGSELQ 157 Query: 89 SYSIPAED----------YACSTGAFYPGYRHDEL---------LDLCDQLEVD--VRQK 127 +Y D Y G D L L+L +Q+ +D + Sbjct: 158 TYFRKLVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGVALELAEQVGLDKVFDRD 217 Query: 128 LTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYAAEGRTFLIST 187 + +LS G+ +K + L+ + + DEP++ LDI + ++ RLI A G ++ Sbjct: 218 VRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAARPGAYVMVVE 277 Query: 188 HQVRDLEHLIDPVIILH 204 H + L+++ D V IL+ Sbjct: 278 HDLAVLDYVSDLVHILY 294 Score = 64.3 bits (155), Expect = 3e-12 Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 15/183 (8%) Query: 27 SLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGVGEVFGIPSERR---DPSVLARLWFL 83 +L GEV G+ G NG GKTT ++ +AG L P EG V+ + R P ++ Sbjct: 379 ALYGGEVIGVAGPNGIGKTTFVRTLAGALKPVEGA--VYPYVEDLRVSYKPQYIS----- 431 Query: 84 PEELPSYSIPAEDYACSTGAFYPGYRHDELLDLCDQLEVD--VRQKLTRLSYGQQKKFFL 141 PE LP ++ A + PG + L+L ++ +D + +++ LS G+ +K + Sbjct: 432 PESLPDATVEQVLKAANPAILAPGSWLN--LELVKRMRLDKLLERRVRTLSGGELQKVAV 489 Query: 142 AFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYA-AEGRTFLISTHQVRDLEHLIDPV 200 A ALA + LLDEP+ LD+ + V R I R L+ H + L+++ D + Sbjct: 490 AAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALVVEHDLMILDYVSDRI 549 Query: 201 IIL 203 +++ Sbjct: 550 MLV 552 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 65.9 bits (159), Expect = 1e-12 Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 14/205 (6%) Query: 24 LSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEG-----VGEVFGIPSERRDPSVLA 78 +S S+R GE GL+G NGAGKTTL +I+G PD G ++ G P+ RR + +A Sbjct: 23 VSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYKGVDITGWPAYRRSRAGIA 82 Query: 79 RLWFLPEELPSYSIPAEDYACSTGAFYP----GYRHDELLDLCDQLEVDVRQKLTR--LS 132 R + + L + ++ GA + ++ D + + ++ + L+ Sbjct: 83 RTFQIVRPLANLTVLNN---VIVGALLRTNDIREARERAMEAIDMVGLAGKEDILAKDLN 139 Query: 133 YGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYAAEGRTFLISTHQVRD 192 ++K+ LA ALAT LLLLDE GL + + + G T ++ H +R Sbjct: 140 LIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLEISKRGITIIMVEHVMRA 199 Query: 193 LEHLIDPVIILHKGRIVLHASMDEL 217 + + + VI+LH G + + E+ Sbjct: 200 VMNFAERVIVLHFGEKIAEGTPREV 224 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 65.5 bits (158), Expect = 1e-12 Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 25/204 (12%) Query: 22 QELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGVGEVFGIPSERRDPSVLAR-- 79 ++++LS+ P V +LG NG+GKTTLLKL A L PD G + RR + L Sbjct: 8 RDVTLSI-PRGVTAILGANGSGKTTLLKLAARLLKPDRG-----SVEGPRRVGAALQNPY 61 Query: 80 LWFLPEELPSYSIPAEDYACSTGAFYPGYRHDELLDLCDQ--LEVDVRQKLTRLSYGQQK 137 L FL + AED A + G E L L + LE + LS G+ + Sbjct: 62 LGFLGPTV------AEDLARTAGG------RGEALKLLREAGLEYASERSPYTLSMGEAR 109 Query: 138 KFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYAAEGRTFLISTHQVRDLEHLI 197 + A++ G +++DEPT+GLD KR + LI R G L++ H + + Sbjct: 110 ILSVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLIARL---GVPVLVAGHDIDFAAAVA 166 Query: 198 DPVIILHKGRIVLHASMDELQERL 221 +IL GR+ + M+ + L Sbjct: 167 GWAVILRDGRVRVSGDMERVLRML 190 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 64.7 bits (156), Expect = 2e-12 Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 10/225 (4%) Query: 2 EPVVHIEGLTFGYTSRSPLFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGV 61 EP++ ++ + Y LF +SL + GE+ LLG NGAGKTT L I+G L P G Sbjct: 4 EPLLEVKSIDVYYGEFQALFG-VSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGS 62 Query: 62 -----GEVFGIPSERRDPSVLARLWFLPEELPSYSIPAE-DYACSTGAFYPGYRH--DEL 113 ++ G+P+ +R ++ + P ++ A ST ++ +++ Sbjct: 63 IIWQGRDITGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRVAASTRRAKEHFQDSLEQV 122 Query: 114 LDLCDQLEVDVRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLI 173 + L+ Q LS G+Q+ +A AL LL++DEP+ GL R V L Sbjct: 123 YTIFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLA 182 Query: 174 PRYAAE-GRTFLISTHQVRDLEHLIDPVIILHKGRIVLHASMDEL 217 R E G T L+ V + D ++ GRIVL + DEL Sbjct: 183 SRLREELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDEL 227 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 64.7 bits (156), Expect = 2e-12 Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 16/210 (7%) Query: 24 LSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGV----GE--VFGIPSERRDPSVL 77 + LS++ GE LLG +G GKTT L+LIAG +PDEG GE F P +R V Sbjct: 22 VDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILIDGEDVTFKDPKDRNVAMVF 81 Query: 78 ARLWFLPEELPSYSIPAEDYACSTGAFYPGYRHDEL----LDLCDQLEVD--VRQKLTRL 131 P +I + G D++ +++ L ++ + +K +L Sbjct: 82 QNYALYPHMSVFDNIA---FTLHLRRKEMGLTKDDIRRRVIEVAKLLRIEDLLDRKPGQL 138 Query: 132 SYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYAAEGR-TFLISTHQV 190 S GQQ++ LA AL + L+DEP + LD + +R + + + + T + TH Sbjct: 139 SGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELKKLQKDLKITTVYVTHDQ 198 Query: 191 RDLEHLIDPVIILHKGRIVLHASMDELQER 220 + + D + +++KGR+V + +E+ R Sbjct: 199 AEAMSMADRIAVMNKGRVVQVGTPEEVYMR 228 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 64.3 bits (155), Expect = 3e-12 Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 27/242 (11%) Query: 5 VHIEGLTFGYTSRSPLFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGVGEV 64 V +E LT Y P+ ++L R + ++G NGAGKTT LK I G + P G + Sbjct: 3 VRVEDLTVAYNGE-PVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFL 61 Query: 65 FGIPSERRDPSVLARLWFLPEELPSYSIP-------AEDYACSTGAFYPGYRHDELLDLC 117 G + R V ++P+ + + E G R E+L Sbjct: 62 DGFEATGRPEMVGRYAGYVPQNPSAPKLSPMTVREFVETSLRLRGVTRARERAVEVLHTL 121 Query: 118 DQLEVDVRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYA 177 + +L LS G ++ F+A A+A +L++DEP +D + ++ R+I A Sbjct: 122 GIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAGLA 181 Query: 178 AEGRTFLISTHQVRDLEHLIDPVIILHKGRIVLHASMDELQERLSFVVLPEAPPDALYVE 237 E R L+++H DP ++L I++ + D ++ PP+ +Y E Sbjct: 182 RE-RLVLMTSH---------DPSLLLGHTDIIVVINRD---------LIASGPPEEVYRE 222 Query: 238 KV 239 V Sbjct: 223 DV 224 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 61.2 bits (147), Expect = 3e-11 Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 23/196 (11%) Query: 20 LFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELF--------PDEGVGEVFGIPSER 71 + +++++++ PG VA ++G +GAGKTTLL++I G+ PD GV ++ Sbjct: 455 VLKDVNITVNPGSVAAVVGASGAGKTTLLRMILGKALGIGGEGYRPDSGVVKI------- 507 Query: 72 RDPSVLARLWFLPEEL-PSY--SIPAEDYACSTGAFYPGYRHDELLDLCDQLEVDVRQKL 128 P+ LP EL PS+ E A G PG + L + + R Sbjct: 508 --PTNTKAAALLPGELEPSFGGETLLEHVASKLGD--PGAAVEVLSSVGLGDAIFFRASF 563 Query: 129 TRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYA-AEGRTFLIST 187 LS GQ+++ LA LA LL++DE LD + R++ R + + A ++G T ++ST Sbjct: 564 GELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLTARRIARKLGKLARSKGITLIVST 623 Query: 188 HQVRDLEHLIDPVIIL 203 ++ L+ L +IL Sbjct: 624 NRPEILDALQPDTVIL 639 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 61.2 bits (147), Expect = 3e-11 Identities = 58/217 (26%), Positives = 105/217 (48%), Gaps = 21/217 (9%) Query: 5 VHIEGLTFGYTSRSPLFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEG---- 60 V +EG+ + ++ + + L ++ GE LLG +G GKTT L+++AG PD G Sbjct: 4 VRLEGIVKRF-GKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYF 62 Query: 61 -VGEVFGIPSERRDPSVLAR---LWFLPEELPSYSIPAEDYACSTGAFYPGYR-HDELLD 115 +V G+P + R+ +++ + LW + + P + R ELL+ Sbjct: 63 DGRDVTGLPPKDRNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAAELLE 122 Query: 116 LCDQLEVDVRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLD----IPSKRQVRR 171 + L+ Q LS GQQ++ +A A+ T +LL+DEP + LD I + ++++ Sbjct: 123 IDHLLDRYPHQ----LSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKK 178 Query: 172 LIPRYAAEGRTFLISTHQVRDLEHLIDPVIILHKGRI 208 L R G T + TH + + D +++++ G I Sbjct: 179 LQRRL---GVTMIYVTHDQVEAMVIGDRIVVMNFGEI 212 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 60.8 bits (146), Expect = 4e-11 Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 12/226 (5%) Query: 4 VVHIEGLTFGYTSRSPLFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAG--------EL 55 ++ +E ++ GY LF ++SL + G + ++G NGAGK+TLLK + G L Sbjct: 5 IIKLEDVSAGYGKLQTLF-DVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVL 63 Query: 56 FPDEGVGEVFGIPSERRDPSVLARLWFLPEELPSY-SIPAEDYACSTGAFYPGYRHDELL 114 F + V + + + + +L + EL Y ++ Y F R +E+ Sbjct: 64 FENTDVTHMPPHDRAKIGMTFIFQLENIFRELTVYENLRLAGYDLPEDVFRD--RLEEVF 121 Query: 115 DLCDQLEVDVRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIP 174 + +L+ + QK LS G+++ +A + + L+DEPT GL ++V + Sbjct: 122 SMFPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVR 181 Query: 175 RYAAEGRTFLISTHQVRDLEHLIDPVIILHKGRIVLHASMDELQER 220 EG T ++ V+ + D +++ GRI +EL R Sbjct: 182 ILNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDGPAEELLAR 227 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 60.5 bits (145), Expect = 5e-11 Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 23/234 (9%) Query: 24 LSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGV----GEVFGIPSERRDPSVLAR 79 + L +R GEV ++GE+G GKTTL K I G P +G GE+ RD + + Sbjct: 41 VDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARDRRLRRK 100 Query: 80 LWFL---PEELPSYSIPAEDYACSTGAFYPGYRHDELLDLCDQLEVDVR---------QK 127 L + P + +P D + R +E ++ V +K Sbjct: 101 LQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETVGLTPGREFYWRK 160 Query: 128 LTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRY-AAEGRTFLIS 186 +LS GQ+++ +A L +++ DEP + +D+ + + LI Y G T ++ Sbjct: 161 PHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTGATIVLI 220 Query: 187 THQVRDLEHLIDPVIILHKGRIVLHASMDELQERLSFVVLPEAPPDALYVEKVP 240 TH + + D + +++ G+IV E+ E S + P P A V P Sbjct: 221 THDIAVARAVADRIAVMYLGKIV------EVGEPRSVIENPRHPYTAALVTSTP 268 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 60.5 bits (145), Expect = 5e-11 Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 28/219 (12%) Query: 24 LSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGV-----GEVFGIPSERRDPSVLA 78 +S+ +R GE+ G++G NGAGKT+LL +I G P G ++ G+ +R L+ Sbjct: 20 VSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDITGLKPHQRITLGLS 79 Query: 79 RLWFLPEELPSYSIPAEDYACSTGAFYPGY--------------------RHDELLDLCD 118 R + E S ++ E+ + G R + ++DL D Sbjct: 80 RTFQHSELFHSMTV-LENIMVRLHPWTRGSILEKALWAFRAKRWEVEARERAEHVIDLLD 138 Query: 119 QLEVDVRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQ-VRRLIPRYA 177 L + L G QKK LA ALA ++L+DEP GL K VR +I Sbjct: 139 -LHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEKEDIVRAIIETSE 197 Query: 178 AEGRTFLISTHQVRDLEHLIDPVIILHKGRIVLHASMDE 216 T ++ H + + + D V+++ G+++ E Sbjct: 198 TMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHE 236 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 60.1 bits (144), Expect = 6e-11 Identities = 59/224 (26%), Positives = 109/224 (48%), Gaps = 11/224 (4%) Query: 5 VHIEGLTFGYTSRSPLFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEG---V 61 + +E +T + + L +SL++ GE+ LLG +G GKTT L++IAG PDEG + Sbjct: 4 IRLESVTKRFGNTVAL-DRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYI 62 Query: 62 G--EVFGIPSERRDPSVLARLWFLPEELPSYSIPAEDYACSTGAFYPGYRHDELLDLCDQ 119 G +V + R+ +++ + + L + + A Y + + Sbjct: 63 GSRDVTMLKPYERNTAMVFQNYALWPHMRVFDNIA--YGLKLRKLPRSEIVRRVRWAAEL 120 Query: 120 LEVD--VRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYA 177 LE+D + + +LS GQQ++ +A A+ T +LL+DEP + LD + ++R I R Sbjct: 121 LEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQ 180 Query: 178 AE-GRTFLISTHQVRDLEHLIDPVIILHKGRIVLHASMDELQER 220 G T + TH + + V ++++GR+ + E+ E+ Sbjct: 181 KRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVYEK 224 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 58.5 bits (140), Expect = 2e-10 Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 31/222 (13%) Query: 23 ELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGV-----GEVFGIPSERRDPSVL 77 +++L + G+V L+G NG+GKTTL+ +I+G PD G ++ G+ L Sbjct: 24 KVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLFKGRDITGMSPHEISKLGL 83 Query: 78 ARLWFLPEELPSYSIPAEDYACSTGAFYPGYRHDELLDLCDQLEVDVRQKLT-------- 129 R + +P+ + ++ T A PG + L L +L + ++ Sbjct: 84 VRTFQIPKPFTNLTVLEN---VLTAADSPG-ENVYLAGLARRLWLGFEKRAAARAFEILG 139 Query: 130 -------------RLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRY 176 LS GQ K +A A+ G ++++DEP G++ + I Sbjct: 140 WVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVNPRLAGSIMERIKYL 199 Query: 177 AAE-GRTFLISTHQVRDLEHLIDPVIILHKGRIVLHASMDEL 217 A E G TFLI H++ ++ +D V + G+++ DE+ Sbjct: 200 AREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEV 241 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 58.2 bits (139), Expect = 2e-10 Identities = 57/249 (22%), Positives = 106/249 (42%), Gaps = 35/249 (14%) Query: 2 EPVVHIEGLT---FGYTSRSPLFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPD 58 +P++ +E L + Y +++S + GE L+GE G GK+ + + ++P Sbjct: 7 DPIIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPP 66 Query: 59 EGV--GEVFGIPSERRDPSVLA----RLWFLPEELPSYSIPAEDYACSTGAFYP-GYRHD 111 + G+++ P R +++ L + E +Y +D + + Y GY+ Sbjct: 67 GRIVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIF--QDPSAALDPLYTIGYQVG 124 Query: 112 ELL----------------------DLCDQLEVDVRQKLTRLSYGQQKKFFLAFALATGV 149 E + L E V+ LS G +++ + +L+ Sbjct: 125 ETMLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRP 184 Query: 150 PLLLLDEPTNGLDIPSKRQVRRLIPRYAAE-GRTFLISTHQVRDLEHLIDPVIILHKGRI 208 LL+ DEPT LD+ + Q+ L+ + E G T L+ TH + + D V +++ G I Sbjct: 185 KLLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNI 244 Query: 209 VLHASMDEL 217 V A +DEL Sbjct: 245 VEEAPVDEL 253 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 57.4 bits (137), Expect = 4e-10 Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 10/195 (5%) Query: 22 QELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEG-----VGEVFGIPSERRDPSV 76 ++++L + E +LG +G+GKTTLL LIAG P G +V +P +R+ + Sbjct: 20 RDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFNDVDVTDLPPNKRNIGL 79 Query: 77 LARLWFLPEELPSYSIPAEDYACSTGAFYPGYRHDELLDLCDQLEVD--VRQKLTRLSYG 134 + + + L + Y A + F +++L + L ++ + + +LS G Sbjct: 80 VFQNYALYPHMTVYENIA--FPLRLRNFGEPAIKEKVLSVAKLLGIEGLLDRYPAQLSGG 137 Query: 135 QQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYAAE-GRTFLISTHQVRDL 193 QQ++ LA AL +LLLDEP + LD + ++R + + E G T + TH + Sbjct: 138 QQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQKELGITAIYVTHDQSEA 197 Query: 194 EHLIDPVIILHKGRI 208 + D + I+ G I Sbjct: 198 LAMADRIAIIASGVI 212 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 57.4 bits (137), Expect = 4e-10 Identities = 56/246 (22%), Positives = 108/246 (43%), Gaps = 28/246 (11%) Query: 2 EPVVHIEGLTFGYTSRSPLFQELS---LSLRPGEVAGLLGENGAGKTTLLKLIAGELFPD 58 E V+ I LT Y +R + L L + GE+ ++GE+G GK+TL + IA + P Sbjct: 3 EIVLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIA-RILPS 61 Query: 59 EGVGEVFGIPSERRDPSVLARLWFLPEELPSY--SIPAEDYACSTGAFYPGYRHDELLD- 115 V E I + + + +EL I + + + A P ++ + + Sbjct: 62 NAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTD 121 Query: 116 -------LCDQLEVDVRQKLT-------------RLSYGQQKKFFLAFALATGVPLLLLD 155 +++ ++ +KL LS G +++ +A +L T +++ D Sbjct: 122 HVSGEKRRVEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIAD 181 Query: 156 EPTNGLDIPSKRQVRRLIPRYAAE-GRTFLISTHQVRDLEHLIDPVIILHKGRIVLHASM 214 EPT LD+ + Q+ +++ R E T ++ TH + + D + +++ G +V A + Sbjct: 182 EPTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVVEVADV 241 Query: 215 DELQER 220 L ER Sbjct: 242 FSLFER 247 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 56.2 bits (134), Expect = 9e-10 Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 25/229 (10%) Query: 11 TFGYTSRSPL--FQELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEG--VGE--- 63 T+ YT R + +S +LR GEV G+ GE+G+GK+TL I G L P G VG Sbjct: 13 TYFYTLRGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILG-LVPPPGRIVGGRIM 71 Query: 64 VFGIPSERRDPSVLARL--WFLPEEL---------PSYSIPAE-----DYACSTGAFYPG 107 + G+ + L R W + P Y++ + G Sbjct: 72 IDGMDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEAR 131 Query: 108 YRHDELLDLCDQLEVDVRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKR 167 R ELL+ + LS GQ+++ +A ALA +++ DEPT LD+ + Sbjct: 132 QRVYELLESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQA 191 Query: 168 QVRRLIPRYAAE-GRTFLISTHQVRDLEHLIDPVIILHKGRIVLHASMD 215 Q+ L+ + A E + ++ TH + + L + V+I++ G+I + D Sbjct: 192 QILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEYGPSD 240 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 55.1 bits (131), Expect = 2e-09 Identities = 27/80 (33%), Positives = 51/80 (63%), Gaps = 1/80 (1%) Query: 131 LSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPR-YAAEGRTFLISTHQ 189 LS GQ+++ +A ALA +L+LDEPT+ LD+ + Q+ RL+ + G T+L+ TH Sbjct: 190 LSGGQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHD 249 Query: 190 VRDLEHLIDPVIILHKGRIV 209 + + ++ V++++ G+I+ Sbjct: 250 ISVVRYMSSSVVVMYSGKIM 269 Score = 41.2 bits (95), Expect = 3e-05 Identities = 18/30 (60%), Positives = 25/30 (83%) Query: 24 LSLSLRPGEVAGLLGENGAGKTTLLKLIAG 53 +SLSL+ GE+ G++GE+G+GKTTL K I G Sbjct: 33 VSLSLKKGEILGVVGESGSGKTTLAKTIIG 62 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 54.7 bits (130), Expect = 3e-09 Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 23/214 (10%) Query: 4 VVHIEGLTFGYTSRSPLFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAG---ELFPDEG 60 VV + + + Y + + +SL P + L G G GK+T+L++ AG ++ Sbjct: 3 VVRLRDVWYRYPGGGWVLRGVSLEA-PRGITLLAGPTGGGKSTILRVAAGLATRIYGGYL 61 Query: 61 VGEVFGIPSERRDPSVLARLWFLPEELPSYSI---PAED--YACSTGAFYPGYRHDELLD 115 GEV E R VL +P++ + + P E+ Y P E + Sbjct: 62 RGEV-----EARGKPVL-----VPQDYDLFILSLTPREELEYCYEASGLPPWEARREAVR 111 Query: 116 LCDQLEVD--VRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLI 173 L ++L ++ + +++++LS G++++ +A ALA G +LL+DEP D + RL+ Sbjct: 112 LAEELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVESLIRLL 171 Query: 174 PRYAAEGRTFLISTHQVRDLEHLIDPVIILHKGR 207 R EG +++ H+V L V +++ GR Sbjct: 172 RRLDVEG--VVVAEHRVHYLLPAASSVYLVYDGR 203 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 52.8 bits (125), Expect = 1e-08 Identities = 55/181 (30%), Positives = 76/181 (41%), Gaps = 35/181 (19%) Query: 24 LSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEG-------------VGEVFGIPSE 70 +SL+L PGE + G NG+GKTTLL+L AG P G VG V P Sbjct: 23 VSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRVSWGCPRGPRGCVGYVGHTPMV 82 Query: 71 RRDPSVLARLWFLPE----ELPSYSIPAEDYACSTGAFYPGYRHDELLDLCDQLEVDVRQ 126 D +V + F L Y + AE + LL LE Sbjct: 83 YGDLTVWENVEFFSSLHGGSLGDYPLAAEAW--------------RLLG----LEKYGSH 124 Query: 127 KLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYAAEGRTFLIS 186 ++LS+G +++ + AL LLLLDE GLD + + RL+ EG L++ Sbjct: 125 LASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLLRLALGEGLALLMT 184 Query: 187 T 187 T Sbjct: 185 T 185 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 52.4 bits (124), Expect = 1e-08 Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 21/225 (9%) Query: 5 VHIEGLTFGYTSRSPLFQELSLSLRPGEVAGLLGENGAGKTTLLKLIAGELFPDEGVGEV 64 + ++GLT + ++ L+ GEV ++G NG+GK++L +I G + G++ Sbjct: 3 LEVKGLT-AKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDI 61 Query: 65 F-----------------GIPSERRDPSVL--ARLWFLPEELPSYSIPAEDYACSTGAFY 105 GI ++DP + RL L + + A+D + Sbjct: 62 LLDGESIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKI 121 Query: 106 PGYRHDELLDLCDQLEVDVRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPS 165 ++ L E+ R+ S G++K+ L A+ +++LDEP +GLDI Sbjct: 122 VKRMYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDG 181 Query: 166 KRQVRRLIPRYAAEGRTFLISTHQVRDLEHL-IDPVIILHKGRIV 209 + V I + GR ++ TH R L + D V +L++G ++ Sbjct: 182 LKIVAEFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGSVL 226 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 51.2 bits (121), Expect = 3e-08 Identities = 53/234 (22%), Positives = 109/234 (46%), Gaps = 26/234 (11%) Query: 24 LSLSLRPGEVAGLLGENGAGKTTLLKLI-------AGELFPDEGVGEVF----GIPSERR 72 +++ + G+ GL+GE+G+GKTT ++I G +F D G+ + G+ RR Sbjct: 55 VTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFD-GIDVMKLRGRGLKEFRR 113 Query: 73 DPSVLARLWF--LPEELPSYSIPAEDYACSTGAFYPGYRHDELLDLCDQL---EVDVRQK 127 ++ + + L +++ AE G + ++ L Q+ E + + Sbjct: 114 RAQIIFQDPYGSLNPRKTIFNLIAEPI--KVHGIKVGDLQEYIVSLLYQVGLNETHLYRY 171 Query: 128 LTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSKRQVRRLIPRYAAE-GRTFLIS 186 S GQ+++ +A LA ++LDEPT+ LD+ + Q+ L+ + T+L Sbjct: 172 PHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTYLFI 231 Query: 187 THQVRDLEHLIDPVIILHKGRIVLHASMDELQERLSFVVLPEAPPDALYVEKVP 240 +H + + ++ D + +++ G+IV +E+ E+ P P + +E +P Sbjct: 232 SHDLGVVRYMSDYIAVMYLGKIVEFGEAEEVFEK------PLHPYTKVLLESIP 279 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 48.1 bits (113), Expect = 2e-07 Identities = 64/255 (25%), Positives = 104/255 (40%), Gaps = 61/255 (23%) Query: 24 LSLSLRPGEVAGLLGENGAGKTTL-------------------------LKLIAGE---L 55 +SLS+ GE ++GE+G+GK+TL L +AGE Sbjct: 26 VSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRILYSGVDLLSLAGEELRR 85 Query: 56 FPDEGVGEVFGIPSERRDP-----SVLARLWFLPEELPSYSIPAEDYACSTGAFYPGYRH 110 + +G VF P+ DP S +A L L S AE A Sbjct: 86 YRGREIGMVFQDPTAYLDPYRTVGSQIAES-LLEHGLASSGSEAESMA------------ 132 Query: 111 DELLDLC----DQLEVDVRQKLTRLSYGQQKKFFLAFALATGVPLLLLDEPTNGLDIPSK 166 + L+L D+ V Q LS GQ+++ +A A+A +L+ DEPT LD+ + Sbjct: 133 GDALELVGIPRDRASVYPHQ----LSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQ 188 Query: 167 RQVRRLIPRYAAE-GRTFLISTHQVRDLEHLIDPVIILHKGRIVLHASMDELQERLSFVV 225 ++ L+ + E G T ++ TH + D + +++ G +V E+ V Sbjct: 189 AKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELV------EIGPAEDVVS 242 Query: 226 LPEAPPDALYVEKVP 240 P P + ++ VP Sbjct: 243 NPIHPYTEMLIKSVP 257 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 43.9 bits (102), Expect = 5e-06 Identities = 59/242 (24%), Positives = 101/242 (41%), Gaps = 53/242 (21%) Query: 24 LSLSLRPGEVAGLLGENGAGKTT-------LLKLIAGELF--PDEGVGEVFGIPSERR-- 72 +S S+ GEV L+GE+G GKTT L+K G +F P + V E ERR Sbjct: 53 VSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEEL----ERRGV 108 Query: 73 --------DPSVLARLWFLPEELPSYSIPAEDYACSTGAFYPGYRHDELLD--------- 115 D + R F P + + Y G+ P + +L+ Sbjct: 109 KSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPY----GSLNPRFTIKRILEDPLLIHSIG 164 Query: 116 -LCDQLEVDVRQ----KLT-----------RLSYGQQKKFFLAFALATGVPLLLLDEPTN 159 ++ E+ R KLT +LS GQ+++ +A A L++ DEP + Sbjct: 165 NAREREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVS 224 Query: 160 GLDIPSKRQVRRLIPRYAAE-GRTFLISTHQVRDLEHLIDPVIILHKGRIVLHASMDELQ 218 LD+ + ++ L+ + + G + L TH + ++ D + +++ G+IV + Sbjct: 225 MLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDARRII 284 Query: 219 ER 220 ER Sbjct: 285 ER 286 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.141 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 302,694 Number of Sequences: 1700 Number of extensions: 13875 Number of successful extensions: 157 Number of sequences better than 1.0e-04: 41 Number of HSP's better than 0.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 63 length of query: 281 length of database: 492,079 effective HSP length: 76 effective length of query: 205 effective length of database: 362,879 effective search space: 74390195 effective search space used: 74390195 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719043|ref|YP_003874575.1| hypothetical protein STHERM_c13620 [Spirochaeta thermophila DSM 6192] (108 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 127,043 Number of Sequences: 1700 Number of extensions: 5762 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 108 length of database: 492,079 effective HSP length: 65 effective length of query: 43 effective length of database: 381,579 effective search space: 16407897 effective search space used: 16407897 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719044|ref|YP_003874576.1| hypothetical protein STHERM_c13630 [Spirochaeta thermophila DSM 6192] (927 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,028,582 Number of Sequences: 1700 Number of extensions: 48391 Number of successful extensions: 126 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 126 Number of HSP's gapped (non-prelim): 0 length of query: 927 length of database: 492,079 effective HSP length: 85 effective length of query: 842 effective length of database: 347,579 effective search space: 292661518 effective search space used: 292661518 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719045|ref|YP_003874577.1| hypothetical protein STHERM_c13640 [Spirochaeta thermophila DSM 6192] (269 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601560|ref|NP_148100.1| zinc transporter [Aeropyrum pernix K1] 132 1e-32 >gi|14601560|ref|NP_148100.1| zinc transporter [Aeropyrum pernix K1] Length = 269 Score = 132 bits (331), Expect = 1e-32 Identities = 91/263 (34%), Positives = 130/263 (49%), Gaps = 17/263 (6%) Query: 10 ILQAFLATLFTWGMTALGAGGVFLFPNPSRKV---MDAMLGFAAGVMIAASFWSLLNPSI 66 I AFL +L+ + MT+LG V ++ +D +GF++G+MI ASF SLL P++ Sbjct: 21 IKAAFLLSLYAFAMTSLGGFLVLAARTHGGRLDVLLDVGMGFSSGIMIVASFTSLLLPAL 80 Query: 67 DLSEQMGLPPWLPPLVGFLLGAAFIRLIDVILPHLHLGEPIERAEGVHTTWKKTLLLVLA 126 ++S G+ ++ F++GA + +I+ ILPH HL + E K L+ A Sbjct: 81 EISGP-GIV-----IISFIVGAIAVYIINEILPHEHLIKGYEGPPSFRRKVKAAWLVATA 134 Query: 127 ITLHNIPEGLXXXXXXXXXXXXIPSXXXXXXXXXXXXXXIQNFPEGLAVSGPLRREGMSP 186 I +HN+PEG+ S Q+FPEGLAVS P+ S Sbjct: 135 IIIHNLPEGMSIGAAA--------SYAISEGLAVALAIGTQDFPEGLAVSLPVFAASGSL 186 Query: 187 ARSFFWGQLSAVVEPXXXXXXXXXXXXMQPVLPYALAFAAGAMIFVVIEEVIPESQLSGN 246 + LS E +L ALAFAAGAM+FVV E +PES SGN Sbjct: 187 YLALLVAMLSGFSEVVAATIVAALIGYSPGLLASALAFAAGAMVFVVSYEALPESHRSGN 246 Query: 247 SDVSTLGAIAGFAVMMTLDVALG 269 ++T+G AGF +M+ LD ALG Sbjct: 247 EKLATVGFFAGFIIMLYLDTALG 269 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.140 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 241,511 Number of Sequences: 1700 Number of extensions: 9453 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 1 length of query: 269 length of database: 492,079 effective HSP length: 75 effective length of query: 194 effective length of database: 364,579 effective search space: 70728326 effective search space used: 70728326 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719046|ref|YP_003874578.1| ribonuclease PH [Spirochaeta thermophila DSM 6192] (226 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [... 86 1e-18 gi|14601411|ref|NP_147948.1| exosome complex RNA-binding protein... 57 3e-10 >gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [Aeropyrum pernix K1] Length = 246 Score = 85.5 bits (210), Expect = 1e-18 Identities = 74/224 (33%), Positives = 102/224 (45%), Gaps = 16/224 (7%) Query: 1 MRPVSFEAGVLAYPAGSCLVSFGNTKVLCAA-SIEEGVPPFIEQEGEGWLTAEYAMLPAS 59 +RPV + G+L GS LV FG T+VL A E F L Y M P S Sbjct: 26 LRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRAALRVRYHMAPFS 85 Query: 60 VPEGRKRRERDSRAVEIQRFIGRSLRAAVDRTRLGPYTIVMDCDVLQADGGTRTAAISGG 119 E RK R +E+ + + +L V I + +VLQADGGTRTAA++ Sbjct: 86 TDE-RKSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQADGGTRTAAVTAA 144 Query: 120 WVALYQALGKLAEMQGVEGPDYFLVGQVAAVSVGMVEGRLVADLDFAHDLAAQVDMNVVM 179 +AL A G+ P LVG VA VG ++G LV D+D D+ + DM V Sbjct: 145 SLALADA--------GI--PMRALVGGVA---VGKIQGVLVVDVDELEDMYGEADMPVAA 191 Query: 180 CDDRLVEVQGNGEKGSFTRDELDAMLDLAAREIRIIYEAQRAAL 223 D + E+ G T +E L +A R I + E ++ A+ Sbjct: 192 APD-IGEITLLQLNGVLTGEEFRTALAMALRAIDRVVEMEKEAI 234 >gi|14601411|ref|NP_147948.1| exosome complex RNA-binding protein Rrp42 [Aeropyrum pernix K1] Length = 276 Score = 57.4 bits (137), Expect = 3e-10 Identities = 57/241 (23%), Positives = 107/241 (44%), Gaps = 23/241 (9%) Query: 2 RPVSFEAGVLAYPAGSCLVSFGNTKVLCAASIEEGV-PPFIEQEGEGWLTAEYAMLPASV 60 R V E G++ GS LV G T+V+ A ++ GV PF + +G LT +P + Sbjct: 38 RNVKIETGIIEKAEGSALVKLGKTQVI--AGVKAGVGAPFKDTPNQGVLTVHAEFVPLAS 95 Query: 61 PEGRKRRERDSRAVEIQRFIGRSLR--AAVDRTRL------GPYTIVMDCDVLQADGGTR 112 P + D A+E+ R + RSLR AVD L + + +D ++ DG Sbjct: 96 PV-FEPGPPDENAIELARVVDRSLREVGAVDLESLVIRPGEKVWVLWVDLYIIDHDGNLF 154 Query: 113 TAAISGGWVALYQA---------LGKLAEMQGVEGPDYFLVGQVAAVSVGMVEGRLVADL 163 A++ L A G++ + EG + + +V V+ ++ +V D Sbjct: 155 DASMLATMAVLLTARLPRYEESETGEIIISKEGEGEELKVKTRVVTVTTAKIDRYIVVDP 214 Query: 164 DFAHDLAAQVDMNVVMCDD-RLVEVQGNGEKGSFTRDELDAMLDLAAREIRIIYEAQRAA 222 + + + V + + ++ R+V +Q G GS T +++ M+ + ++ ++A A Sbjct: 215 NIEEEAVSDVRLVTAVDENGRIVGLQKTG-MGSLTEADIETMIGYSLEASKVYFKALEEA 273 Query: 223 L 223 + Sbjct: 274 I 274 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 235,604 Number of Sequences: 1700 Number of extensions: 10412 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 2 length of query: 226 length of database: 492,079 effective HSP length: 74 effective length of query: 152 effective length of database: 366,279 effective search space: 55674408 effective search space used: 55674408 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719047|ref|YP_003874579.1| hypothetical protein STHERM_c13660 [Spirochaeta thermophila DSM 6192] (79 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.146 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,024 Number of Sequences: 1700 Number of extensions: 3523 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 79 length of database: 492,079 effective HSP length: 49 effective length of query: 30 effective length of database: 408,779 effective search space: 12263370 effective search space used: 12263370 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719048|ref|YP_003874580.1| hepn domain-containing protein [Spirochaeta thermophila DSM 6192] (133 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431390|ref|NP_147836.2| hypothetical protein APE_1272.1 [A... 65 5e-13 gi|118431183|ref|NP_147472.2| hypothetical protein APE_0760.1 [A... 40 3e-05 >gi|118431390|ref|NP_147836.2| hypothetical protein APE_1272.1 [Aeropyrum pernix K1] Length = 139 Score = 65.5 bits (158), Expect = 5e-13 Identities = 31/92 (33%), Positives = 47/92 (51%) Query: 7 WYSQGVRDLEKACLDAEEGYHEWACFTAQQAAEKVTKALALRVGVEVWGHSVREILQVVS 66 W Q LE +D E G++ WACF A QAAE KA+ G+E +GH + + + Sbjct: 11 WLRQAKHTLESIRVDYEGGFYSWACFKANQAAEYSIKAVLRAAGLESFGHDLMALWRRAR 70 Query: 67 ERVHIPPAVMDAARILDLYYIPPRYPNGFPSG 98 + + +L+ Y+PPRYP+ +P G Sbjct: 71 SLCQPLQEMEECIAVLNKLYLPPRYPDAWPGG 102 >gi|118431183|ref|NP_147472.2| hypothetical protein APE_0760.1 [Aeropyrum pernix K1] Length = 135 Score = 39.7 bits (91), Expect = 3e-05 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Query: 7 WYSQGVRDLEKACLDAEEGYHEWACFTAQQAAEKVTKALALRV-GVEVWGHSVREILQVV 65 W RDL +A + G A F +QQAAEK K L L G HS+R +L+ + Sbjct: 8 WLRAARRDLGRAEYSLKVGDRAAATFWSQQAAEKALKGLLLAFKGDYPKTHSIRRLLEDL 67 Query: 66 SERVHIPPAVMDAARILDLYYIPPRYPN 93 + + ++ A L YY RYP+ Sbjct: 68 GLDLGLSEGELEDAFELTQYYYLSRYPD 95 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 134,912 Number of Sequences: 1700 Number of extensions: 5058 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 2 length of query: 133 length of database: 492,079 effective HSP length: 68 effective length of query: 65 effective length of database: 376,479 effective search space: 24471135 effective search space used: 24471135 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719049|ref|YP_003874581.1| hypothetical protein STHERM_c13680 [Spirochaeta thermophila DSM 6192] (35 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.139 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,984 Number of Sequences: 1700 Number of extensions: 455 Number of successful extensions: 1 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 35 length of database: 492,079 effective HSP length: 9 effective length of query: 26 effective length of database: 476,779 effective search space: 12396254 effective search space used: 12396254 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719050|ref|YP_003874582.1| hypothetical protein STHERM_c13690 [Spirochaeta thermophila DSM 6192] (74 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.144 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,490 Number of Sequences: 1700 Number of extensions: 2155 Number of successful extensions: 5 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 74 length of database: 492,079 effective HSP length: 45 effective length of query: 29 effective length of database: 415,579 effective search space: 12051791 effective search space used: 12051791 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719051|ref|YP_003874583.1| transporter [Spirochaeta thermophila DSM 6192] (319 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 141 2e-35 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 138 2e-34 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 137 4e-34 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 127 3e-31 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 125 1e-30 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 121 3e-29 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 118 2e-28 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 108 2e-25 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 108 2e-25 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 105 1e-24 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 103 4e-24 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 103 7e-24 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 102 2e-23 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 101 2e-23 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 100 8e-23 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 94 4e-21 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 94 4e-21 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 93 1e-20 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 92 2e-20 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 89 2e-19 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 86 1e-18 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 86 2e-18 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 85 3e-18 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 79 1e-16 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 78 3e-16 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 78 3e-16 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 76 1e-15 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 70 7e-14 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 67 6e-13 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 65 2e-12 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 64 4e-12 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 64 7e-12 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 61 3e-11 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 59 1e-10 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 59 2e-10 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 58 3e-10 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 58 4e-10 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 56 1e-09 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 54 4e-09 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 49 2e-07 gi|118431756|ref|YP_874928.1| hypothetical protein APE_2154b [Ae... 41 3e-05 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 141 bits (356), Expect = 2e-35 Identities = 104/322 (32%), Positives = 161/322 (50%), Gaps = 18/322 (5%) Query: 1 MIEVQHLTKRY-------GIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSA 53 MIE + L KR+ + A+ VSFS+ +GEI FLGPNGAGK+TT+ IL+ L Sbjct: 5 MIEARGLVKRFVSGRIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDP 64 Query: 54 TEGTVVIDGVXXXXXXXXXXXXIGY-LPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEH 112 G + G IG L Y LT E L + + +P+ K Sbjct: 65 DGGEARVAGFDVVKERWEVRKRIGVMLSVERGFYWKLTGRENLYYFGRIYGIPQGELKSR 124 Query: 113 LESIMEKVGILHVRG--RLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIID 170 ++ +++ VG+ + G + +S G K R+GLA+ L+ DPE+LILDEPT+GLDP Sbjct: 125 IKEVLDLVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASART 184 Query: 171 IRTLIKDLGKD-RTVILSSHILPEVSMVCKRVLIINSGVIVADDTPENLAKRLMGTNTLL 229 IR +I+ L + RT+ +++H + E M+ RV II G I + TP+ L +R+ + L Sbjct: 185 IRGVIRSLASEGRTIFITTHNMVEAEMISDRVGIIIGGRIAMEGTPDELKRRVFSSINLE 244 Query: 230 LRIEGTREEVEKALALVKE------VQELEFRPSQEEGTVEVVAKAPEETDIRKAVFTAC 283 R++ + +K VK V + F V V P E I + + Sbjct: 245 FRVKASGHAAKKFFYDVKGEYGNRIVGGVTFSDGILTFRVSVNRDEPAEPIIDR-ITRLA 303 Query: 284 ARADLPILQMRSLDISLEDIFL 305 + IL++++L+ SLED+F+ Sbjct: 304 YQYRFKILEIKALEPSLEDVFV 325 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 138 bits (348), Expect = 2e-34 Identities = 97/310 (31%), Positives = 155/310 (50%), Gaps = 13/310 (4%) Query: 1 MIEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVI 60 M+ + L K YG AV VSF I +GE+ LGPNGAGK+TT+ +L+ L T G I Sbjct: 6 MVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWI 65 Query: 61 DGVXXXXXXXXXXXXIGYLPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKV 120 G IG +P++ ++ + + A L +P +E +++ + Sbjct: 66 AGYSIVREPGNVRRVIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEARERTREVLDYL 125 Query: 121 GILHVRGRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGK 180 ++ R V S G ++++ +A +LV P++L LDEPT+GLD + I+DL + Sbjct: 126 DLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLKR 185 Query: 181 DR-TVILSSHILPEVSMVCKRVLIINSGVIVADDTPENLAKRLMGTNTLLLRIEGTREEV 239 T++L++H + E M+ RV II+ G IVA+ TPE L R+ G T+ + ++ E Sbjct: 186 SAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEELKARVKG-ETVYIELKDP-EYT 243 Query: 240 EKALALVKEVQELEFRPSQEEGTVEVVAKAPEETDIRKAVFTACARA--DLPILQMRSLD 297 E + +KE +L PS EG V V D + ARA P+ + Sbjct: 244 EPLVLALKE--KLGLEPSVVEGKVAV------RVDRADTLLPELARALNGFPVKAISITR 295 Query: 298 ISLEDIFLQL 307 +LED+F++L Sbjct: 296 ATLEDVFIEL 305 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 137 bits (345), Expect = 4e-34 Identities = 97/304 (31%), Positives = 156/304 (51%), Gaps = 18/304 (5%) Query: 16 AVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVIDGVXXXXXXXXXXXX 75 A+ V + +G + LGPNGAGK+T + IL+ L G + G Sbjct: 28 ALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANNVRSR 87 Query: 76 IGY-LPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKVGI---LHVRGRLVR 131 IG L LY L+ + L F + L +P R K ++ ++E VG+ HVR V Sbjct: 88 IGVVLGGERALYWRLSGWDNLWFFSQLYGIPPREAKRRVKELLEIVGLEEWAHVR---VE 144 Query: 132 NLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGKD-RTVILSSHI 190 N SKG KQR+ +A+ L+ DPE+L+LDEPTIGLDP+ ++R++I+ + ++ RTV+L++H Sbjct: 145 NYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVLLTTHY 204 Query: 191 LPEVSMVCKRVLIINSGVIVADDTPENLAKRLMGTNTLLLRIEGTREEVEKALALVKEVQ 250 + E + RV II+ G IVA+ PE+L + G + + L++ G ++ L++ + Sbjct: 205 MVEAEELSDRVAIISKGRIVAEGPPEDLKSLVGGESVIELKVMGG----DRVSMLLERLG 260 Query: 251 ELEFRPSQEEGTVEVVAKAPEETDIRKAVFTACARADLPILQMRSLDI---SLEDIFLQL 307 + +G E +A+ R + I R LD+ SLED+F++L Sbjct: 261 GRVISVVERDGARVFRVLVSEPDSFIEALLAELTRINASI---RGLDVRSPSLEDVFIKL 317 Query: 308 VTQE 311 E Sbjct: 318 AGGE 321 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 127 bits (320), Expect = 3e-31 Identities = 82/226 (36%), Positives = 119/226 (52%), Gaps = 12/226 (5%) Query: 2 IEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVID 61 +E + + KR G + DVS ++ +G + G +GPNGAGK+T L G A G V + Sbjct: 9 VEAEGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALL 68 Query: 62 GVXXXXXXXXXXXXIGYLPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKVG 121 G + YLPE+ Y ++T EFLR A + V E LE +E+ Sbjct: 69 GEPVERAGGSLFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGV------EDLEGYLEEAS 122 Query: 122 ILH-VRGRL---VRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKD 177 L + GRL VR+ SKG ++R+ +A L P + +LDEPT GLDP + IR L+K+ Sbjct: 123 RLSGLGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKE 182 Query: 178 LGKDR--TVILSSHILPEVSMVCKRVLIINSGVIVADDTPENLAKR 221 + TV+LSSH + EV VC + +I+SG IV +P +R Sbjct: 183 YSERHGVTVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGEAVRR 228 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 125 bits (315), Expect = 1e-30 Identities = 75/221 (33%), Positives = 118/221 (53%), Gaps = 1/221 (0%) Query: 2 IEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVID 61 +E + L KR+G TAV VSFS+ GE +GPNG+GK+T + +++G L + G+V + Sbjct: 5 VEARGLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVC 64 Query: 62 GVXXXXXX-XXXXXXIGYLPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKV 120 G IG+ P++PP+ +T E++ V L + + ++E + Sbjct: 65 GYDVWGDGWREARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREARRVLEML 124 Query: 121 GILHVRGRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGK 180 G V GR+V LS G ++ +G+A AL +PE+++LDEP GLD R + ++ K Sbjct: 125 GFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASLRKAFK 184 Query: 181 DRTVILSSHILPEVSMVCKRVLIINSGVIVADDTPENLAKR 221 RTV+ SSH E RVLI++ G + A P L +R Sbjct: 185 GRTVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPRELIQR 225 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 121 bits (303), Expect = 3e-29 Identities = 93/318 (29%), Positives = 152/318 (47%), Gaps = 30/318 (9%) Query: 1 MIEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVI 60 +IEV+ L KRYG A+ VSFS+ GE+ G+LGPNGAGK+TT+ +L G+ T G+ + Sbjct: 4 VIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARV 63 Query: 61 DGVXXXX-XXXXXXXXIGYLPENPPLYGHLT----VDEFLRFVADLKHVPKRRQKEHLES 115 GV +GY+P YG ++ +D + R V R E Sbjct: 64 FGVELYNPGASGVRRRVGYVPGEFEFYGGVSGGRMLDYWCRLVGGCSRGVVRELLEAFPL 123 Query: 116 IMEKVGILHVRGRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLI 175 +E R V S+G KQ + L A +P+++++DEPT GLDP + + Sbjct: 124 PLE---------RAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDFV 174 Query: 176 KDLGKDR-TVILSSHILPEVSMVCKRVLIINSGVIVADDTPENLAKRLMGTNTLLLRIEG 234 + ++ TV SSH+L EV V RV ++ SGV+VA + +L ++ + R+ Sbjct: 175 RSKAREGVTVFFSSHVLSEVQRVADRVGLLRSGVLVALEDVSSLLRK--SGKVVKARVSK 232 Query: 235 TREEVEKALALVKEVQELEFRPSQEEGTVEVVAKAPEETDIRKAVFTACARADLPILQMR 294 A+ V+ + + G +E+V + + + +V A L L++R Sbjct: 233 NLSPDRLAVDGVRVI--------RSNGELELVVTSGKALE---SVLRMLLDAGLEDLEVR 281 Query: 295 SLDISLEDIFLQLVTQES 312 D +LE++F+ + S Sbjct: 282 --DATLEEVFMHFYERTS 297 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 118 bits (296), Expect = 2e-28 Identities = 93/309 (30%), Positives = 155/309 (50%), Gaps = 12/309 (3%) Query: 2 IEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVID 61 + L+KR+G A +V F+ G I+G LGPNGAGK+T + + G + + G ++++ Sbjct: 5 VNASALSKRFGQRYAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVE 63 Query: 62 GVXXXXXXXXXXX-XIGYLPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKV 120 GV IGY+PE P + T L +A L+ + +E V Sbjct: 64 GVNPRSPGFEKLLPRIGYVPELPVVPLWTTPCILLETLARLEGYTSVEARVRAREALEVV 123 Query: 121 GILHVRGRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGK 180 G+ + LSKG ++RV +AQA +G+ E+L+LDEP GLDP + +R L++ + + Sbjct: 124 GLAGECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAR 183 Query: 181 D-RTVILSSHILPEVSMVCKRVLIINSGVIVADDTPENLAKRLMGTNTLLLRIEGTREEV 239 + TVI+SSHIL E+ + VL++ + + E L L GT ++L + E Sbjct: 184 EGATVIVSSHILRELEDIATHVLVLKTDQLFYGSI-EELRAWLSGTPRIILSV----AEP 238 Query: 240 EKALALVKEVQELEFRPSQEEGTVEVVAKAPEETDIRKAVFTACARADLPILQMRSLDIS 299 E+A+ +++ + + +G VV A E D V + ++ I + R S Sbjct: 239 ERAVEVLRRGGFNAY--TINKGGQLVV--AVEGADDPARVLSLLLAENIEISEYRVEKAS 294 Query: 300 LEDIFLQLV 308 LE+ +L+LV Sbjct: 295 LEEAYLKLV 303 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 108 bits (270), Expect = 2e-25 Identities = 73/210 (34%), Positives = 113/210 (53%), Gaps = 3/210 (1%) Query: 2 IEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVID 61 ++++ + K +G AV DV+ I+ E V LGP+G+GK+T + ++ G + G + + Sbjct: 4 VKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFN 63 Query: 62 GVXXXXXXXXXXXXIGYLPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKVG 121 V IG + +N LY H+TV E + F L++ + KE + S+ + +G Sbjct: 64 DVDVTDLPPNKRN-IGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVAKLLG 122 Query: 122 ILHVRGRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGKD 181 I + R LS G +QRV LA+ALV +PE+L+LDEP LD I IR+ +K L K+ Sbjct: 123 IEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQKE 182 Query: 182 R--TVILSSHILPEVSMVCKRVLIINSGVI 209 T I +H E + R+ II SGVI Sbjct: 183 LGITAIYVTHDQSEALAMADRIAIIASGVI 212 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 108 bits (269), Expect = 2e-25 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 1 MIEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVI 60 +++V+ + KR+G A+ VSFS+++GE VG +GPNGAGK+T NI++G G V+ Sbjct: 4 ILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIY 63 Query: 61 DGVXXXXXXXXXXXXIGYLPENP---PLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIM 117 GV G PL +LTV + A L+ R +E + Sbjct: 64 KGVDITGWPAYRRSRAGIARTFQIVRPL-ANLTVLNNVIVGALLRTNDIREARERAMEAI 122 Query: 118 EKVGILHVRGRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIID-IRTLIK 176 + VG+ L ++L+ K+R+ LA+AL PE+L+LDE GL PR++ D + TL++ Sbjct: 123 DMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLE 182 Query: 177 DLGKDRTVILSSHILPEVSMVCKRVLIINSGVIVADDTPENLA 219 + T+I+ H++ V +RV++++ G +A+ TP +A Sbjct: 183 ISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVA 225 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 105 bits (263), Expect = 1e-24 Identities = 71/253 (28%), Positives = 127/253 (50%), Gaps = 19/253 (7%) Query: 2 IEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVID 61 + V+ LT Y + V+ + +V +GPNGAGK+T + + G + G V +D Sbjct: 3 VRVEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLD 62 Query: 62 GVXXXXXXXXXXXXIGYLPENP--PLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEK 119 G GY+P+NP P +TV EF+ L+ V + R++ +E Sbjct: 63 GFEATGRPEMVGRYAGYVPQNPSAPKLSPMTVREFVETSLRLRGVTRARERA-----VEV 117 Query: 120 VGILHVRGRLVRN----LSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLI 175 + L +RG ++ + LS G QRV +A+A+ DP++L++DEP +DP ++I +I Sbjct: 118 LHTLGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARII 177 Query: 176 KDLGKDRTVILSSHILPEVSMVCKRVLIINSGVIVADDTPENLAKRLMGTNTLLLRIEGT 235 L ++R V+++SH P + + ++++ + ++A PE + + +L R+ G Sbjct: 178 AGLARERLVLMTSHD-PSLLLGHTDIIVVINRDLIASGPPEEVYR-----EDVLRRVYG- 230 Query: 236 REEVEKALALVKE 248 E V + L L E Sbjct: 231 -ESVARGLVLAGE 242 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 103 bits (258), Expect = 4e-24 Identities = 64/223 (28%), Positives = 114/223 (51%), Gaps = 7/223 (3%) Query: 1 MIEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVI 60 ++E + + K+Y + V + +GE VG +GPNGAGK+T + + G G V++ Sbjct: 4 VLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLL 63 Query: 61 DGVXXXXXXXXXXXXIGYLPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKV 120 +G+ +G + E P L + V EFL A + R ++ + Sbjct: 64 NGLDPWREPRAREG-VGVVFERPNLPSSMPVVEFLESAAAIIGSSPSR----VDWAIRAA 118 Query: 121 GILHVRGRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGK 180 G+ + LS G KQR +A AL+G+P L+ DEPT LDP + ++ L+ L + Sbjct: 119 GLEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLNR 178 Query: 181 DR--TVILSSHILPEVSMVCKRVLIINSGVIVADDTPENLAKR 221 + ++++SSH++ E+ V R+ ++ G + A+ +PE+L +R Sbjct: 179 EHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDLFRR 221 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 103 bits (256), Expect = 7e-24 Identities = 70/226 (30%), Positives = 113/226 (50%), Gaps = 7/226 (3%) Query: 2 IEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVID 61 I ++ + KR+G AV V SI+ GE LGP+G GK+TT+ ++ G EG ++ID Sbjct: 4 IRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILID 63 Query: 62 GVXXXXXXXXXXXXIGYLPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHL-ESIMEKV 120 G + + +N LY H++V + + F L+ K+ + ++E Sbjct: 64 G-EDVTFKDPKDRNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIEVA 122 Query: 121 GILHVRGRLVR---NLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKD 177 +L + L R LS G +QRV LA+ALV P++ ++DEP LD + +R +K Sbjct: 123 KLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELKK 182 Query: 178 LGKDR--TVILSSHILPEVSMVCKRVLIINSGVIVADDTPENLAKR 221 L KD T + +H E + R+ ++N G +V TPE + R Sbjct: 183 LQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEVYMR 228 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 102 bits (253), Expect = 2e-23 Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 14/228 (6%) Query: 1 MIEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVI 60 ++EV+ + YG A+ VS + KGEIV LG NGAGK+TT+ ++G L G+++ Sbjct: 6 LLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIW 65 Query: 61 DG--VXXXXXXXXXXXXIGYLPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIME 118 G + I ++PE ++ LTV E LR A RR KEH + +E Sbjct: 66 QGRDITGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRVAAS-----TRRAKEHFQDSLE 120 Query: 119 KVGILHV-----RGRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRT 173 +V + R +L LS G +Q + +A+AL+ P +L++DEP++GL P+ D+ Sbjct: 121 QVYTIFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIY 180 Query: 174 LIKDLGKDR--TVILSSHILPEVSMVCKRVLIINSGVIVADDTPENLA 219 L L ++ T++L + V R ++ +G IV + + LA Sbjct: 181 LASRLREELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDELA 228 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 101 bits (252), Expect = 2e-23 Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 3/216 (1%) Query: 2 IEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVID 61 I ++ +TKR+G A+ VS +I GEI LGP+G GK+TT+ ++ G+ + EG V I Sbjct: 4 IRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYI- 62 Query: 62 GVXXXXXXXXXXXXIGYLPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKVG 121 G + +N L+ H+ V + + + L+ +P+ + E + Sbjct: 63 GSRDVTMLKPYERNTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWAAELLE 122 Query: 122 ILHVRGRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGK- 180 I H+ R LS G +QRV +A+A+V +PE+L++DEP LD + +R I L K Sbjct: 123 IDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQKR 182 Query: 181 -DRTVILSSHILPEVSMVCKRVLIINSGVIVADDTP 215 T++ +H E + RV ++N G + TP Sbjct: 183 LGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTP 218 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 99.8 bits (247), Expect = 8e-23 Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 3/226 (1%) Query: 2 IEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVID 61 + ++ + KR+G A+ + I+ GE V LGP+G GK+TT+ I+ G G V D Sbjct: 4 VRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFD 63 Query: 62 GVXXXXXXXXXXXXIGYLPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKVG 121 G + + ++ L+ H+ V + + F +K +P+ + E + Sbjct: 64 G-RDVTGLPPKDRNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAAELLE 122 Query: 122 ILHVRGRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGK- 180 I H+ R LS G +QRV +A+A+V +PE+L++DEP LD I +R+ IK L + Sbjct: 123 IDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKLQRR 182 Query: 181 -DRTVILSSHILPEVSMVCKRVLIINSGVIVADDTPENLAKRLMGT 225 T+I +H E ++ R++++N G I TP ++ R T Sbjct: 183 LGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDVYHRPANT 228 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 94.0 bits (232), Expect = 4e-21 Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 4/208 (1%) Query: 20 VSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVIDGVXX-XXXXXXXXXXIGY 78 VS S++ GEI G NGAGK+T++ +L G LS G + GV +GY Sbjct: 33 VSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPWGGGFERVKGEVGY 92 Query: 79 LPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKVGILHVR-GRLVRNLSKGY 137 LPE+ +Y LT E + F A L + R +E +E+ + G+ R SKG Sbjct: 93 LPEDASVYERLTGMENILFYARL-YSGWRDVEELVENAVFYSGLSREDLARRAGGYSKGM 151 Query: 138 KQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGKD-RTVILSSHILPEVSM 196 K+R+ L L+ P +++LDEPT G+DP I+ +++ L ++ R +++++H L Sbjct: 152 KRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSREGRAILVTTHDLALAEE 211 Query: 197 VCKRVLIINSGVIVADDTPENLAKRLMG 224 + RV II+ G VA P L + G Sbjct: 212 IADRVTIIHGGSTVASGPPYRLVEEYCG 239 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 94.0 bits (232), Expect = 4e-21 Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 10/227 (4%) Query: 2 IEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVID 61 + + ++ YG A+ VSFS + I LGP+G GK+T + ++ G L G V Sbjct: 6 VRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFG 65 Query: 62 GVXXXXXXXXXXXXIGYLPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKVG 121 GV +G++ ++ L+ H+TV + + F + + +E +E VG Sbjct: 66 GV-DYTGLPPERRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWALETVG 124 Query: 122 ILHVR---GRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLD----PRQIIDIRTL 174 + R GR V LS G +QRV LA+A+ +P +L+LDEP LD R + +++ L Sbjct: 125 LTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRL 184 Query: 175 IKDLGKDRTVILSSHILPEVSMVCKRVLIINSGVIVADDTPENLAKR 221 + LG T+I +H E + ++I+ G IV TP + R Sbjct: 185 QRKLGS--TMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEVYTR 229 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 92.8 bits (229), Expect = 1e-20 Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 6/226 (2%) Query: 1 MIEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVI 60 ++EV+ L Y + V S+ GE + +GP+G+GKST + + + G++V Sbjct: 4 LLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVF 63 Query: 61 DGVXXXXXXXXXXXX----IGYLPENPPLYGHLTVDEFLRFVADLK-HVPKRRQKEHLES 115 GV IGYLP++ L+ H+TV + + + + +R +E Sbjct: 64 RGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAEERAVK 123 Query: 116 IMEKVGILHVRGRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDI-RTL 174 + +GI + R LS G +QR LA+AL +P+IL+LDEPT LDP D+ L Sbjct: 124 YLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEAL 183 Query: 175 IKDLGKDRTVILSSHILPEVSMVCKRVLIINSGVIVADDTPENLAK 220 + + +I+ +H V R+ + G++ + P L + Sbjct: 184 FRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSELVE 229 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 91.7 bits (226), Expect = 2e-20 Identities = 66/238 (27%), Positives = 117/238 (49%), Gaps = 27/238 (11%) Query: 1 MIEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVI 60 M+ +++T R+G TA+ +VS +++GEI+G +GPNGAGK++ +N++TG G V Sbjct: 1 MLWTENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYF 60 Query: 61 DGVXXXXXXXXXXXXIGYLP--ENPPLYGHLTVDEFL------------------RFVAD 100 G +G ++ L+ +TV E + F A Sbjct: 61 KGRDITGLKPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAK 120 Query: 101 LKHVPKRRQKEHLESIMEKVGILHV-RGRLVRNLSKGYKQRVGLAQALVGDPEILILDEP 159 V R + EH+ +++ LH R + L G +++V LA AL +PE++++DEP Sbjct: 121 RWEVEARERAEHVIDLLD----LHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEP 176 Query: 160 TIGLDPRQIIDIRTLIKDLGK--DRTVILSSHILPEVSMVCKRVLIINSGVIVADDTP 215 GL + DI I + + T++L H + V+ VC RV++++ G ++ + P Sbjct: 177 MAGLSKEEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPP 234 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 88.6 bits (218), Expect = 2e-19 Identities = 79/280 (28%), Positives = 126/280 (45%), Gaps = 27/280 (9%) Query: 16 AVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVIDG--VXXXXXXXXXX 73 A+ +V F+++ GE+ LG NGAGK+T M IL G + T G + + G V Sbjct: 28 ALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYVWGRKVSWRGPWDAIR 87 Query: 74 XXIGYLPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKVGILHVRGRLVRNL 133 I + + L +TV+E + + + + E++G+ + V +L Sbjct: 88 NGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRTLETAERLGLEIDLAKTVADL 147 Query: 134 SKGYKQRVGLAQALVGDPEILILDEPTIGLDP---RQIIDIRTLIKDLGKDRTVILSSHI 190 G +QRV + +AL G ++LILDEPT L P ++ L+KD+G +V+ +H Sbjct: 148 PMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLRLLKDMGV--SVVYITHK 205 Query: 191 LPEVSMVCKRVLIINSGVI------VADDTPENLAKRLMGT------------NTLLLRI 232 L EV V RV ++ G + V + E LA+ ++GT LL + Sbjct: 206 LGEVVRVADRVTVLRRGRVSAVIEDVGRTSEEELARLMVGTLPPPTPRPPGKVGRELLSV 265 Query: 233 EGTREEVEKALALVKEVQELEFRPSQEEGTVEVVAKAPEE 272 G V+ + V+EV LE R + G V EE Sbjct: 266 RGVSVVVD-GVERVREV-SLEVREGEIVGIAGVAGNGQEE 303 Score = 50.8 bits (120), Expect = 4e-08 Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 20/224 (8%) Query: 17 VHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVIDGVXXXXXXXXXXXXI 76 V +VS +++GEIVG G G G+ ++ + G G++ + G Sbjct: 278 VREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEVQGRRIEGSLDFYRAGG 337 Query: 77 GYL--PENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKVGILHVRGRLVR--- 131 GY+ L +V E + F+ ++ LE + + L R RLV Sbjct: 338 GYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRRSRLEDLFRR---LVERFRLVARSP 394 Query: 132 -----NLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGKDRT-VI 185 LS G +Q+V + ++ ++L+ PT GLD +R L+ +L + ++ Sbjct: 395 WTPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTSFVRNLLSELARQGAGIL 454 Query: 186 LSSHILPEVSMVCKRVLIINSGVIV-----ADDTPENLAKRLMG 224 L S L E+ + R+ +++ G + + TPE L LMG Sbjct: 455 LVSTDLDEILELSDRIYVMSGGRVTGVLERSQATPEKLGV-LMG 497 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 85.9 bits (211), Expect = 1e-18 Identities = 63/213 (29%), Positives = 107/213 (50%), Gaps = 15/213 (7%) Query: 16 AVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVIDGVXXXXX-----XX 70 A+ +VS S+ +GE++ +GP+G+GK+T +NI+ G G V++DG Sbjct: 29 ALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGEELRR 88 Query: 71 XXXXXIGYLPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKVGILHVRGRLV 130 +GY+ + L LT E + L R + + L + +VG+ R Sbjct: 89 FRLERVGYVFQQHNLIPTLTALENILLPMALAGKANRLRGQEL---LRRVGLGGKERRYP 145 Query: 131 RNLSKGYKQRVGLAQALVGDPEILILDEPTIGLD---PRQIIDIRTLIKDL-GKDRTVIL 186 LS G +QR+ +A AL DP I++ DEPT LD +I +R L+++ + +TV+L Sbjct: 146 EELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERI--VRILLEEAHSRGKTVVL 203 Query: 187 SSHILPEVSMVCKRVLIINSGVIVADDTPENLA 219 ++H P V+ + RV +I G + +P +A Sbjct: 204 TTHD-PRVARMADRVAVIEDGRLRGVYSPSRIA 235 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 85.5 bits (210), Expect = 2e-18 Identities = 61/226 (26%), Positives = 112/226 (49%), Gaps = 8/226 (3%) Query: 1 MIEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVI 60 +I+++ ++ YG + DVS I +G I +GPNGAGKST + + G+ + +G V+ Sbjct: 5 IIKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLF 64 Query: 61 DGVXXXXXXXXXXXXIG--YLPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIME 118 + IG ++ + ++ LTV E LR +P+ ++ LE + Sbjct: 65 ENTDVTHMPPHDRAKIGMTFIFQLENIFRELTVYENLRLAG--YDLPEDVFRDRLEEVFS 122 Query: 119 KVGILHVR-GRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKD 177 L R G+ LS G +Q + +A ++ P++ ++DEPT GL P+ ++ + ++ Sbjct: 123 MFPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVRI 182 Query: 178 LGKD--RTVILSSHILPEVSMVCKRVLIINSGVIVADDTPENLAKR 221 L K+ V++ ++ + + K VL++N G I D E L R Sbjct: 183 LNKEGYTVVLVEQNVKASLEIGDKGVLVVN-GRIAFDGPAEELLAR 227 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 84.7 bits (208), Expect = 3e-18 Identities = 62/236 (26%), Positives = 115/236 (48%), Gaps = 18/236 (7%) Query: 1 MIEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVI 60 ++ V+ L KR+G A+ V+ I++G++ +GPNG+GK+T +N+++G+ G V+ Sbjct: 6 ILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLF 65 Query: 61 DGVXXXXXXXXXXXXIGYLP--ENPPLYGHLTVDEFLRFVAD-------LKHVPKR---- 107 G +G + + P + +LTV E + AD L + +R Sbjct: 66 KGRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWLG 125 Query: 108 ---RQKEHLESIMEKVGILHVRGRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLD 164 R I+ VG+ H+ R LS G + + +A+A++ E++I+DEP G++ Sbjct: 126 FEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVN 185 Query: 165 PRQIIDIRTLIKDLGKDR--TVILSSHILPEVSMVCKRVLIINSGVIVADDTPENL 218 PR I IK L +++ T ++ H + V RV ++ G ++A P+ + Sbjct: 186 PRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEV 241 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 79.3 bits (194), Expect = 1e-16 Identities = 58/212 (27%), Positives = 105/212 (49%), Gaps = 14/212 (6%) Query: 17 VHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLS-----ATEGTVVIDG--VXXXXXX 69 + ++S S++KG I +GPNGAGK+T + ++G + T G++ ++G + Sbjct: 21 IKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNREPD 80 Query: 70 XXXXXXIGYLPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKVGILHVR-GR 128 + Y+ E ++ LT +E L VA ++ + S++ L R G Sbjct: 81 EIARRGVIYVMEGRRIFKELTTEENLVSVA----YAAGASRDDIRSVLSYFPRLKERLGE 136 Query: 129 LVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGKDR--TVIL 186 NLS G +Q + +A AL+ P++L+LDEP++GL P+ I IK L ++ T++L Sbjct: 137 KAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHREEGLTILL 196 Query: 187 SSHILPEVSMVCKRVLIINSGVIVADDTPENL 218 + + + +I +G IV + + E L Sbjct: 197 AEQNARKALEISDYGYVIENGRIVLEGSAEEL 228 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 78.2 bits (191), Expect = 3e-16 Identities = 64/217 (29%), Positives = 105/217 (48%), Gaps = 22/217 (10%) Query: 12 GIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSA----TEGTVVIDGVXXXX 67 GI AV VSF++++GE++G G +G+GKST + G + G ++IDG+ Sbjct: 20 GIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTS 79 Query: 68 XXXX-----------XXXXIGYLPENPPLYGHLTVDEFLRFVADL-KHVPKRRQKEHLES 115 G + P+Y TV + V + + V + ++ + Sbjct: 80 MSEAELRRKVRWKKVSMVFQGAMNVLTPVY---TVGRQIEEVLQIHRGVGRHEARQRVYE 136 Query: 116 IMEKVGILH-VRGRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTL 174 ++E VG+ + R LS G KQRV +A AL +P+I+I DEPT LD I L Sbjct: 137 LLESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNL 196 Query: 175 IKDLG--KDRTVILSSHILPEVSMVCKRVLIINSGVI 209 +K L K+ ++IL +H L ++ + + V+I+ G I Sbjct: 197 LKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGKI 233 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 77.8 bits (190), Expect = 3e-16 Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 9/219 (4%) Query: 2 IEVQHLTKRYGIHTAV-HDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVI 60 + ++ + RY V VSFS+ G +V LGPNG+GK+T + +L G + + G V + Sbjct: 6 VRLEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEV 65 Query: 61 DGVXXXXXXXXXXXXIGYLPENPPLYGHLTVDE---FLRFVADLKHVPKRRQKEHLESIM 117 G +GY P +P + L E R+ RR E + + + Sbjct: 66 CG----SPPGRVRRMLGYAPASPEVDPRLKAVEVALLYRYGVSEGVAWGRRDWEEVLAAL 121 Query: 118 EKVGILHVRGRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKD 177 ++G+ + R LS G ++ V LA L P + +LDEP LD + + +++ Sbjct: 122 GEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRS 181 Query: 178 LGKDRTVILSSHILPEVSMVCKRVLIINSGVIVADDTPE 216 L T++ ++H P +M V+++ G++ A PE Sbjct: 182 LRGRATIVYTTHD-PLAAMAADSVIMLREGLLHAQGPPE 219 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 76.3 bits (186), Expect = 1e-15 Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 18/218 (8%) Query: 20 VSFSIQKGEIVGFLGPNGAGKSTTMNILTGYL-----SATEGTVVIDGVXXXXXX-XXXX 73 +SF Q G + +GP+G+GKST + ++ + + EG V I+ + Sbjct: 24 ISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVMKEDPYNIR 83 Query: 74 XXIGYLPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIME---KVGIL--HVRGR 128 G + + P + H+T+ E + L + K K+ L+ I+E K+ L V+ R Sbjct: 84 RYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKN--KKELDEIVEWALKMAHLWDEVKDR 141 Query: 129 LV---RNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGKDR--T 183 L LS G +QR+ LA+AL P +L+LDEPT +DP + I I + K+ T Sbjct: 142 LSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKEEMAT 201 Query: 184 VILSSHILPEVSMVCKRVLIINSGVIVADDTPENLAKR 221 VI+ +H + + + ++L + G ++ + L R Sbjct: 202 VIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELVLR 239 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 70.1 bits (170), Expect = 7e-14 Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 9/211 (4%) Query: 1 MIEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVI 60 ++ ++++ K G + VS ++ GE V G NG+GK+T + + G + G V Sbjct: 4 LLRLENVWKMLGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRV-- 61 Query: 61 DGVXXXXXXXXXXXXIGYLPENPPLYGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKV 120 +GY+ P +YG LTV E + F + L H + Sbjct: 62 ----SWGCPRGPRGCVGYVGHTPMVYGDLTVWENVEFFSSL-HGGSLGDYPLAAEAWRLL 116 Query: 121 GILHVRGRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIK-DLG 179 G+ L LS G+++R+ + +AL+G+P +L+LDE GLD + L++ LG Sbjct: 117 GLEKYGSHLASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLLRLALG 176 Query: 180 KDRTVILSSHIL-PEVSMVCKRVLIINSGVI 209 + +++++ +L P + RV + G++ Sbjct: 177 EGLALLMTTPLLEPRYLGLASRVYTLQDGLL 207 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 67.0 bits (162), Expect = 6e-13 Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 15/225 (6%) Query: 2 IEVQHLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTG--YLSATEGTVV 59 +EV+ LT + G ++ V F ++ GE+ +GPNG+GKS+ ++ G EG ++ Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 60 IDG--VXXXXXXXXXXXXIGYLPENPP-LYGHLTVDEFLRFV------ADLKHVPKRRQK 110 +DG + I ++PP + G + FV DL + Sbjct: 63 LDGESIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKIV 122 Query: 111 EHLESIMEKVGI-LHVRGRLVR-NLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQI 168 + + K+G+ + R V S G K+R L QA++ DP+I+ILDEP GLD + Sbjct: 123 KRMYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGL 182 Query: 169 IDIRTLIKDL-GKDRTVILSSHILPEVSMV-CKRVLIINSGVIVA 211 + IK L R V+L +H ++ V RV ++ G ++A Sbjct: 183 KIVAEFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGSVLA 227 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 65.5 bits (158), Expect = 2e-12 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 10/222 (4%) Query: 12 GIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVIDG--VXXXXXX 69 G+H A+ V+ S G + LG NGAGK+T + + G + +G +++DG + Sbjct: 17 GVH-ALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPKGPG 75 Query: 70 XXXXXXIGYLPENPPLYGHLTVDEFLRFVADL--KHVPKRRQKEHLESIMEKVGILHVRG 127 I +NPP+Y + E L + + R+ + L E +G+ Sbjct: 76 DSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAEASEALGLNIDPD 135 Query: 128 RLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDL-GKDRTVIL 186 R + + +QR+ + +AL ++LDEPT L P + + L V+L Sbjct: 136 RYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAASGAAVLL 195 Query: 187 SSHILPEVSMVCKRVLIINSGVIVADDTP----ENLAKRLMG 224 +H + E R++I+ GV V + P E +AK + G Sbjct: 196 VTHRIGEAMEHADRLVILRKGVKVYEGPPPSSTEEVAKLMFG 237 Score = 47.4 bits (111), Expect = 5e-07 Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 14/198 (7%) Query: 24 IQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVIDGVXXXXX--XXXXXXXIGYLPE 81 +++GE+VG G G G+ ++ G +G ++I GV +G +PE Sbjct: 277 VRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRLGLGVIPE 336 Query: 82 NPPLYGH-LTVDEFLRF-VADLKHVPK-------RRQKEHLESIMEKVGILHVRGR-LVR 131 GH L E + F +A H + R ++ E ++ +GI V R +V Sbjct: 337 E--RLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGIKAVSPRQMVD 394 Query: 132 NLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGKDRTVILSSHIL 191 LS G QR+ LA+ L P +L+ P GLD + +++ + V++ L Sbjct: 395 ELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRMSSERGGVLVIDEDL 454 Query: 192 PEVSMVCKRVLIINSGVI 209 + V ++ + + G++ Sbjct: 455 DFLLRVSNKIYVASGGIV 472 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 64.3 bits (155), Expect = 4e-12 Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 15/245 (6%) Query: 16 AVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVIDGVXXXXXXXXXXXX 75 AV +V+ I +G+ +G +G +G+GK+T ++ T G + DG+ Sbjct: 51 AVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGLKE 110 Query: 76 IG----YLPENPPLYGHL----TVDEFLRFVADLKHVPKRRQKEHLESIMEKVGILHVR- 126 + ++P YG L T+ + + + +E++ S++ +VG+ Sbjct: 111 FRRRAQIIFQDP--YGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQVGLNETHL 168 Query: 127 GRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGK--DRTV 184 R S G +QR+ +A+ L PE ++LDEPT LD I L+KDL + T Sbjct: 169 YRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTY 228 Query: 185 ILSSHILPEVSMVCKRVLIINSGVIVADDTPENLAKRLMG--TNTLLLRIEGTREEVEKA 242 + SH L V + + ++ G IV E + ++ + T LL I EV K Sbjct: 229 LFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEVFEKPLHPYTKVLLESIPVPDPEVAKR 288 Query: 243 LALVK 247 + ++ Sbjct: 289 RSRIR 293 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 63.5 bits (153), Expect = 7e-12 Identities = 69/243 (28%), Positives = 108/243 (44%), Gaps = 28/243 (11%) Query: 1 MIEVQHLTKRY----GIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSA--- 53 ++++Q L Y GI AV VS S+ KGE + +G +G+GKST + + Sbjct: 3 VLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGR 62 Query: 54 -TEGTVVIDGVXXXXXXXXXXXX-----IGYLPENPPLY--GHLTVDEFLRFVADLKHVP 105 G ++ GV IG + ++P Y + TV + L Sbjct: 63 IVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGS--QIAESLLEHG 120 Query: 106 KRRQKEHLESI----MEKVGILHVRGRLV-RNLSKGYKQRVGLAQALVGDPEILILDEPT 160 ES+ +E VGI R + LS G +QRV +A A+ +P+ILI DEPT Sbjct: 121 LASSGSEAESMAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPT 180 Query: 161 IGLDPRQIIDIRTLIKDLGKDR--TVILSSHILPEVSMVCKRVLIINSGVIV----ADDT 214 LD I L+K L ++R TV+L +H + + R+ ++ +G +V A+D Sbjct: 181 TALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDV 240 Query: 215 PEN 217 N Sbjct: 241 VSN 243 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 61.2 bits (147), Expect = 3e-11 Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 21/221 (9%) Query: 27 GEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVIDGVXXXXXXXXXXXXIGYLPE--NPP 84 GE++G GPNG GK+T + L G L EG V + Y P+ +P Sbjct: 383 GEVIGVAGPNGIGKTTFVRTLAGALKPVEGAV---------YPYVEDLRVSYKPQYISPE 433 Query: 85 LYGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKVGILHVRGRLVRNLSKGYKQRVGLA 144 TV++ L+ P L M +L R VR LS G Q+V +A Sbjct: 434 SLPDATVEQVLKAANPAILAPGSWLNLELVKRMRLDKLLE---RRVRTLSGGELQKVAVA 490 Query: 145 QALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGKDR--TVILSSHILPEVSMVCKRVL 202 AL + ++ +LDEP+ LD + + + I+ + + R ++ H L + V R++ Sbjct: 491 AALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALVVEHDLMILDYVSDRIM 550 Query: 203 IINS--GVIVADDTPENLAKRLMGTNTLLLRIEGTREEVEK 241 ++ GV D P + + G N LL + T + E+ Sbjct: 551 LVTGEPGVRGHVDDPRPVKE---GMNLLLQNLGVTVRKDEQ 588 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 59.3 bits (142), Expect = 1e-10 Identities = 56/234 (23%), Positives = 101/234 (43%), Gaps = 26/234 (11%) Query: 1 MIEVQHLTKRY----GIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEG 56 ++ ++ LT Y G+ A+ V + +GEI+ +G +G GKST + L + Sbjct: 5 VLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSN-- 62 Query: 57 TVVIDGVXXXXXXXXXXXXIGYLPENP---------------PLYGHLTVDEFLRFVADL 101 V+ G + L E+ P V + + V D Sbjct: 63 AVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDH 122 Query: 102 KHVPKRRQKEHLESIMEKVGILH---VRGRLVRNLSKGYKQRVGLAQALVGDPEILILDE 158 KRR ++ + I++K+ + + + LS G KQR+ +A +L+ P I+I DE Sbjct: 123 VSGEKRRVEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADE 182 Query: 159 PTIGLDPRQIIDIRTLIKDLGK--DRTVILSSHILPEVSMVCKRVLIINSGVIV 210 PT LD I ++ L + + T+IL +H L + + R+ ++ +G +V Sbjct: 183 PTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVV 236 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 58.9 bits (141), Expect = 2e-10 Identities = 70/253 (27%), Positives = 108/253 (42%), Gaps = 43/253 (16%) Query: 1 MIEVQHLTKRY----GIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYL----S 52 +IEV++L + GI A+ DVSF I +GE +G G GKS T LT + Sbjct: 9 IIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGR 68 Query: 53 ATEGTVV----------IDGVXXXXXXXXXXXXIGYLPENP-----PLYGHLTVDEFLRF 97 EG + I + I Y+ ++P PLY + + Sbjct: 69 IVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYT-------IGY 121 Query: 98 VADLKHVPKRRQKEHLESIMEKVGILHV-----RGRLVRN----LSKGYKQRVGLAQALV 148 + R + E + VG+L + V++ LS G KQR + +L Sbjct: 122 QVGETMLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLS 181 Query: 149 GDPEILILDEPTIGLD---PRQIIDIRTLIKDLGKDRTVILSSHILPEVSMVCKRVLIIN 205 P++LI DEPT LD QI+D+ T +K T++L +H L V+ C RV ++ Sbjct: 182 NRPKLLIADEPTTALDVTIQAQIMDLLTQLK-REHGLTLLLITHNLGLVAEYCDRVAVMY 240 Query: 206 SGVIVADDTPENL 218 +G IV + + L Sbjct: 241 AGNIVEEAPVDEL 253 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 58.2 bits (139), Expect = 3e-10 Identities = 72/281 (25%), Positives = 114/281 (40%), Gaps = 75/281 (26%) Query: 6 HLTKRYGIHTAVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVIDGVXX 65 +L K G AV VS S++KGEI+G +G +G+GK+T + G G V ID Sbjct: 19 YLKKVIGYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFID---- 74 Query: 66 XXXXXXXXXXIGYLPENPPLYGHLTVDEFLR----------------FVADLKHVPKRRQ 109 G L E +Y L E ++ + D + K R+ Sbjct: 75 --------IDKGELEEAVSIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRR 126 Query: 110 KEHL------ESIMEKVGILHVRGRLVR-----NLSKGYKQR------------------ 140 K + S+ ++ + + G VR S+G K+R Sbjct: 127 KVQMVQQDPYSSLNPRMKVGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRY 186 Query: 141 -----------VGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGK--DRTVILS 187 V +A+AL +P+IL+LDEPT LD I L+++L K T +L Sbjct: 187 PYELSGGQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLI 246 Query: 188 SHILPEVSMVCKRVLIINSGVIVADDTPENLAKRLMGTNTL 228 +H + V + V+++ SG I+ E+ K ++ TN L Sbjct: 247 THDISVVRYMSSSVVVMYSGKIM-----ESAPKHILFTNPL 282 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 57.8 bits (138), Expect = 4e-10 Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 14/216 (6%) Query: 16 AVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVIDGVXXXXXXXXXXXX 75 AV V I++GE++ +G +G GK+T + G ++G + G Sbjct: 37 AVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARDRR 96 Query: 76 IG----------YLPENPPL-YGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKVGILH 124 + Y +P + G + + +RR E LE++ G Sbjct: 97 LRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETVGLTPG-RE 155 Query: 125 VRGRLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGK--DR 182 R LS G +QRV +A+ LV +PE+++ DEP +D I LI D + Sbjct: 156 FYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTGA 215 Query: 183 TVILSSHILPEVSMVCKRVLIINSGVIVADDTPENL 218 T++L +H + V R+ ++ G IV P ++ Sbjct: 216 TIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSV 251 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 56.2 bits (134), Expect = 1e-09 Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 12/182 (6%) Query: 20 VSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVIDGVXXXXXXXXXXXXIGYL 79 VS +G I GP G GKST + + G + G + V + Sbjct: 23 VSLEAPRG-ITLLAGPTGGGKSTILRVAAGLATRIYGGYLRGEVEARGKPVL-------V 74 Query: 80 PENPPLYG-HLTVDEFLRFVADLKHVPKRRQKEHLESIMEKVGILHVRGRLVRNLSKGYK 138 P++ L+ LT E L + + +P + + E++GI + R V LS G + Sbjct: 75 PQDYDLFILSLTPREELEYCYEASGLPPWEARREAVRLAEELGIEDLLDRRVSKLSAGER 134 Query: 139 QRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGKDRTVILS---SHILPEVS 195 QRV +A AL E+L++DEP DP + + L++ L + V+ ++LP S Sbjct: 135 QRVAIASALALGAEVLLMDEPLAYQDPLGVESLIRLLRRLDVEGVVVAEHRVHYLLPAAS 194 Query: 196 MV 197 V Sbjct: 195 SV 196 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 54.3 bits (129), Expect = 4e-09 Identities = 57/238 (23%), Positives = 100/238 (42%), Gaps = 32/238 (13%) Query: 16 AVHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTV-------VIDGVXXXXX 68 AV VSFSI +GE+ +G +G GK+TT + + AT G V V++ + Sbjct: 49 AVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERRGV 108 Query: 69 XXXXXXXIGYLP----ENPPL-----------YGHL----TVDEFLRFVADLKHVPKRRQ 109 + L + PL YG L T+ L + + R+ Sbjct: 109 KSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNARE 168 Query: 110 KEHLES-IMEKVGILHVRG---RLVRNLSKGYKQRVGLAQALVGDPEILILDEPTIGLDP 165 +E + + ++E V + R LS G +QRV +A+A + +P +++ DEP LD Sbjct: 169 REEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSMLDV 228 Query: 166 RQIIDIRTLIKDLGK--DRTVILSSHILPEVSMVCKRVLIINSGVIVADDTPENLAKR 221 +I L+ + +++ +H L +C R+ ++ G IV + +R Sbjct: 229 SIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDARRIIER 286 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 48.9 bits (115), Expect = 2e-07 Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 26/208 (12%) Query: 17 VHDVSFSIQKGEIVGFLGPNGAGKSTTMNILTGYLSATEGTVVIDGVXXXXXXXXXXXXI 76 + DV+ SI +G + LG NG+GK+T + + L G+V + Sbjct: 7 LRDVTLSIPRG-VTAILGANGSGKTTLLKLAARLLKPDRGSV------------EGPRRV 53 Query: 77 GYLPENPPL--YGHLTVDEFLRFVADLKHVPKRRQKEHLESIMEKVGILHVRGRLVRNLS 134 G +NP L G ++ R K ++ + G+ + R LS Sbjct: 54 GAALQNPYLGFLGPTVAEDLARTAGGRGEALK---------LLREAGLEYASERSPYTLS 104 Query: 135 KGYKQRVGLAQALVGDPEILILDEPTIGLDPRQIIDIRTLIKDLGKDRTVILSSHILPEV 194 G + + + A+ PE +++DEPT GLD + +LI LG V+++ H + Sbjct: 105 MGEARILSVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLIARLGV--PVLVAGHDIDFA 162 Query: 195 SMVCKRVLIINSGVIVADDTPENLAKRL 222 + V +I+ G + E + + L Sbjct: 163 AAVAGWAVILRDGRVRVSGDMERVLRML 190 >gi|118431756|ref|YP_874928.1| hypothetical protein APE_2154b [Aeropyrum pernix K1] Length = 77 Score = 41.2 bits (95), Expect = 3e-05 Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 155 ILDEPTIGLDPRQIIDIRTLIKDLGKDRTVILSSHILPEVSMVCKRVLIINSGVI 209 +LDEPT GLD +R I +L D VI+++H + V V RV ++ GV+ Sbjct: 3 LLDEPTTGLDREAYESVRAAILELSLDSAVIVATHDVRLVGDVADRVYMVRDGVL 57 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 286,534 Number of Sequences: 1700 Number of extensions: 11816 Number of successful extensions: 170 Number of sequences better than 1.0e-04: 41 Number of HSP's better than 0.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 76 Number of HSP's gapped (non-prelim): 53 length of query: 319 length of database: 492,079 effective HSP length: 77 effective length of query: 242 effective length of database: 361,179 effective search space: 87405318 effective search space used: 87405318 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719052|ref|YP_003874584.1| ABC transporter permease [Spirochaeta thermophila DSM 6192] (287 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.141 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 197,412 Number of Sequences: 1700 Number of extensions: 6097 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 287 length of database: 492,079 effective HSP length: 76 effective length of query: 211 effective length of database: 362,879 effective search space: 76567469 effective search space used: 76567469 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719053|ref|YP_003874585.1| hypothetical protein STHERM_c13720 [Spirochaeta thermophila DSM 6192] (488 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 449,603 Number of Sequences: 1700 Number of extensions: 19043 Number of successful extensions: 65 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65 Number of HSP's gapped (non-prelim): 0 length of query: 488 length of database: 492,079 effective HSP length: 80 effective length of query: 408 effective length of database: 356,079 effective search space: 145280232 effective search space used: 145280232 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719054|ref|YP_003874586.1| hypothetical protein STHERM_c13730 [Spirochaeta thermophila DSM 6192] (545 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 468,253 Number of Sequences: 1700 Number of extensions: 19041 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 545 length of database: 492,079 effective HSP length: 81 effective length of query: 464 effective length of database: 354,379 effective search space: 164431856 effective search space used: 164431856 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719055|ref|YP_003874587.1| hypothetical protein STHERM_c13740 [Spirochaeta thermophila DSM 6192] (583 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 560,566 Number of Sequences: 1700 Number of extensions: 23864 Number of successful extensions: 102 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102 Number of HSP's gapped (non-prelim): 0 length of query: 583 length of database: 492,079 effective HSP length: 82 effective length of query: 501 effective length of database: 352,679 effective search space: 176692179 effective search space used: 176692179 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719056|ref|YP_003874588.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM 6192] (595 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 637,737 Number of Sequences: 1700 Number of extensions: 31079 Number of successful extensions: 120 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120 Number of HSP's gapped (non-prelim): 0 length of query: 595 length of database: 492,079 effective HSP length: 82 effective length of query: 513 effective length of database: 352,679 effective search space: 180924327 effective search space used: 180924327 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719057|ref|YP_003874589.1| hypothetical protein STHERM_c13760 [Spirochaeta thermophila DSM 6192] (111 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.140 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 128,635 Number of Sequences: 1700 Number of extensions: 5845 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 111 length of database: 492,079 effective HSP length: 65 effective length of query: 46 effective length of database: 381,579 effective search space: 17552634 effective search space used: 17552634 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719058|ref|YP_003874590.1| histidine kinase [Spirochaeta thermophila DSM 6192] (207 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 216,272 Number of Sequences: 1700 Number of extensions: 9718 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 0 length of query: 207 length of database: 492,079 effective HSP length: 73 effective length of query: 134 effective length of database: 367,979 effective search space: 49309186 effective search space used: 49309186 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719059|ref|YP_003874591.1| hypothetical protein STHERM_c13780 [Spirochaeta thermophila DSM 6192] (160 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.143 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 168,855 Number of Sequences: 1700 Number of extensions: 7029 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 0 length of query: 160 length of database: 492,079 effective HSP length: 70 effective length of query: 90 effective length of database: 373,079 effective search space: 33577110 effective search space used: 33577110 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719060|ref|YP_003874592.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (220 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 215,179 Number of Sequences: 1700 Number of extensions: 9503 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 220 length of database: 492,079 effective HSP length: 73 effective length of query: 147 effective length of database: 367,979 effective search space: 54092913 effective search space used: 54092913 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719061|ref|YP_003874593.1| hypothetical protein STHERM_c13800 [Spirochaeta thermophila DSM 6192] (119 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 118,505 Number of Sequences: 1700 Number of extensions: 4173 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 119 length of database: 492,079 effective HSP length: 66 effective length of query: 53 effective length of database: 379,879 effective search space: 20133587 effective search space used: 20133587 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719062|ref|YP_003874594.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (319 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600549|ref|NP_147066.1| hypothetical protein APE_0231 [Aero... 68 3e-13 gi|118431283|ref|NP_147639.2| hypothetical protein APE_0974.1 [A... 65 3e-12 gi|118431896|ref|NP_148644.2| hypothetical protein APE_2489.1 [A... 58 3e-10 gi|118431612|ref|NP_148203.2| hypothetical protein APE_1838.1 [A... 58 3e-10 gi|118431018|ref|NP_147193.2| hypothetical protein APE_0383.1 [A... 51 4e-08 gi|14600580|ref|NP_147097.1| hypothetical protein APE_0267 [Aero... 43 1e-05 gi|14600550|ref|NP_147067.1| hypothetical protein APE_0233 [Aero... 43 1e-05 >gi|14600549|ref|NP_147066.1| hypothetical protein APE_0231 [Aeropyrum pernix K1] Length = 287 Score = 68.2 bits (165), Expect = 3e-13 Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 5/119 (4%) Query: 22 KVRDVMTRDLITATPDEPLRSIQHKMKANRITGVPVIQKHRLVGIVSLDDIITALDKGYI 81 +V MTRD+ T +PD+ L + M + I+ +PV++ +L GI+++ DI AL + Y Sbjct: 4 RVVSYMTRDVYTVSPDDTLAHARKLMLTHDISRLPVVEGSKLRGIITITDIADALVRKYP 63 Query: 82 DEPAG-----RHMTRNVVVLEEDMPLRFAISYLDKYHYGRFPVLDKKGSLVGIVTSRDI 135 PA M R+VV +E ++ A S + K++ G PV+ G+L GI+T D+ Sbjct: 64 SRPANSIYVREVMARDVVTIEGTKSVKTAASLMLKHNIGGVPVVAPDGTLEGIITRTDL 122 Score = 40.4 bits (93), Expect = 6e-05 Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 11/122 (9%) Query: 20 TLKVRDVMTRDLITATPDEPLRSIQHKMKANRITGVPVIQKH-RLVGIVSLDDIITALDK 78 ++ VR+VM RD++T + +++ M + I GVPV+ L GI++ D L + Sbjct: 69 SIYVREVMARDVVTIEGTKSVKTAASLMLKHNIGGVPVVAPDGTLEGIITRTD----LTR 124 Query: 79 GYIDEPAGRHMTRNVV-----VLEEDMPLRFAISYLDKYHYGRFPVLDKKGSLVGIVTSR 133 Y ++ G ++ + + + + + + ++ G+ +LD G LVG++T R Sbjct: 125 YYSEKMKGVNLVKEFMREIYAKARREHSIFYVLKLMEIDATGKVLILD-GGKLVGVITKR 183 Query: 134 DI 135 DI Sbjct: 184 DI 185 >gi|118431283|ref|NP_147639.2| hypothetical protein APE_0974.1 [Aeropyrum pernix K1] Length = 299 Score = 64.7 bits (156), Expect = 3e-12 Identities = 35/128 (27%), Positives = 70/128 (54%), Gaps = 2/128 (1%) Query: 15 LELIYTLKVRDVMTRDLITATPDEPLRSIQHKMKANRITGVPVIQ-KHRLVGIVSLDDII 73 + +I +KV +++R L+T D +R + + ++ I G P++ K+ ++G ++ DI Sbjct: 169 MTVIPNIKVNSLISRKLLTVRHDMTVREVAKFLYSHGIRGAPIVDDKNNIIGFITTTDIS 228 Query: 74 TALDKGY-IDEPAGRHMTRNVVVLEEDMPLRFAISYLDKYHYGRFPVLDKKGSLVGIVTS 132 + +G +D ++M + V + ED + A+ Y+D GR V+D G +GI+T Sbjct: 229 MLIARGEDLDATVDKYMRKTVFTINEDESIYEAMRYMDFNGVGRLVVIDYAGRPLGIITR 288 Query: 133 RDIITSLL 140 DI+ +L+ Sbjct: 289 TDILKALI 296 >gi|118431896|ref|NP_148644.2| hypothetical protein APE_2489.1 [Aeropyrum pernix K1] Length = 148 Score = 58.2 bits (139), Expect = 3e-10 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 7/132 (5%) Query: 21 LKVRDVMTRDLITATPDEPLRSIQHKMKANRITGVPVIQKH-RLVGIVSLDDIITALDKG 79 ++ D+M +++T PD+P+ M N I V V+ RL GIV+ DI+ + + Sbjct: 13 VRASDIMITEVVTVKPDDPVTRAAKLMVENLIGSVLVVDDEGRLRGIVTERDIVYVVSEA 72 Query: 80 YIDEPAGRH----MTRNVVVLEEDMPLRFAISYLDKYHYGRFPVLDKKGSLVGIVTSRDI 135 + +P MT N +V+ D L + + + + PV+D+KG+ VGI++ RD+ Sbjct: 73 W--DPTKHRVWEIMTENPIVVRPDDDLLTVVRKMSETNVRHLPVVDEKGAPVGIISFRDV 130 Query: 136 ITSLLLQANRAL 147 + L+ AL Sbjct: 131 LDFLMSVLGLAL 142 >gi|118431612|ref|NP_148203.2| hypothetical protein APE_1838.1 [Aeropyrum pernix K1] Length = 135 Score = 58.2 bits (139), Expect = 3e-10 Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 32 ITATPDEPLRSIQHKMKAN-RITGVPVIQKHRLVGIVSLDDIITALDKGY-IDEPAGRHM 89 +TA P P+R + M + V V Q +R +GI + D++ + G +D P +M Sbjct: 15 LTAAPQTPVREVVKMMYTQGKSAAVVVDQDNRPIGIFTERDVVRVVATGGDLDAPVEEYM 74 Query: 90 TRNVVVLEEDMPLRFAISYLDKYHYGRFPVLDKKGSLVGIVTSRDIITSLLLQANRALEQ 149 TRN V + ++ L A++ + ++ PV+D++G LVGI+T+ IT +L + + + Sbjct: 75 TRNPVAVRDNESLTKALALMIEHRVRHLPVVDQEGKLVGIITASS-ITEVLKRYKEEVGE 133 Query: 150 ME 151 +E Sbjct: 134 LE 135 >gi|118431018|ref|NP_147193.2| hypothetical protein APE_0383.1 [Aeropyrum pernix K1] Length = 158 Score = 50.8 bits (120), Expect = 4e-08 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 5/119 (4%) Query: 23 VRDVMTRDLITATPDEPLRSIQHKMKANRITGVPVI-QKHRLVGIVSLDDIITALDKGYI 81 VRD+M+ IT P ++ M NR+ + V+ +++ L+GI++ DII + + Sbjct: 12 VRDIMSSPPITTLPMTSVKEAAKIMLENRVGSLIVVNERNTLLGILTKTDIIREVVAKGL 71 Query: 82 DEPA---GRHMTRNVVVLEEDMPLRFAISYLDKYHYGRFPVLDKKGSL-VGIVTSRDII 136 D + G MTRN + D + A S + +++ G PVLD + VGIVT DI+ Sbjct: 72 DPESVRVGDIMTRNPYYVYTDDSVERAASLMGEHNIGHLPVLDPETEKPVGIVTKTDIV 130 >gi|14600580|ref|NP_147097.1| hypothetical protein APE_0267 [Aeropyrum pernix K1] Length = 143 Score = 42.7 bits (99), Expect = 1e-05 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 21 LKVRDVMTRDLITATPDEPLRSIQHKMKANRITGVPVIQKHRLV-GIVSLDDIITALDKG 79 LK + VM+ +T + M + + V+ K LV GI++ DII +L G Sbjct: 13 LKAKHVMSTPPVTIEVGRSIAEAARLMAERGVGSLIVVDKQGLVKGILTERDIINSLASG 72 Query: 80 YI--DEPAGRHMTRNVVVLEEDMPLRFAISYLDKYHYGRFPVLDKKGSLVGIVTSRDII 136 + M+RN +V D L I + + PV+D+ G +G+++ RDII Sbjct: 73 KACAEGKVEDIMSRNPIVASPDDDLEIIIEKMRDMNIRHIPVIDEDGRPLGMISVRDII 131 >gi|14600550|ref|NP_147067.1| hypothetical protein APE_0233 [Aeropyrum pernix K1] Length = 340 Score = 42.7 bits (99), Expect = 1e-05 Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Query: 23 VRDVMTRDLITATPDEPLRSIQHKMKANRITGVPVIQKH-RLVGIVSLDDIITALDKGYI 81 V +M R I + + L +I M I +PV+ L G+++ +I+ + Sbjct: 141 VATIMNRHPIAVSVSDDLDTILRIMVGEGIGFLPVLYDDGTLHGVITERNILGRIADIPF 200 Query: 82 DEPAGRHMTRNVVVLEEDMPLRFAISYLDKYHYGRFPVLDKK-GSLVGIVTSRDII 136 D+ G +MT +V ++ + PL+ A+ + Y + R V+ G + G++T++DI+ Sbjct: 201 DKKVGDYMTATIVGVDPEAPLKEAMRSMVTYGFRRLLVISSSTGEIKGVITAKDIV 256 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 343,699 Number of Sequences: 1700 Number of extensions: 15934 Number of successful extensions: 80 Number of sequences better than 1.0e-04: 7 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 18 length of query: 319 length of database: 492,079 effective HSP length: 77 effective length of query: 242 effective length of database: 361,179 effective search space: 87405318 effective search space used: 87405318 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719063|ref|YP_003874595.1| hypothetical protein STHERM_c13820 [Spirochaeta thermophila DSM 6192] (113 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.131 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,772 Number of Sequences: 1700 Number of extensions: 2226 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 113 length of database: 492,079 effective HSP length: 66 effective length of query: 47 effective length of database: 379,879 effective search space: 17854313 effective search space used: 17854313 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719064|ref|YP_003874596.1| PHP-like protein [Spirochaeta thermophila DSM 6192] (216 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 224,849 Number of Sequences: 1700 Number of extensions: 9728 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 216 length of database: 492,079 effective HSP length: 73 effective length of query: 143 effective length of database: 367,979 effective search space: 52620997 effective search space used: 52620997 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719065|ref|YP_003874597.1| laminarinase [Spirochaeta thermophila DSM 6192] (670 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.135 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 710,999 Number of Sequences: 1700 Number of extensions: 32657 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 0 length of query: 670 length of database: 492,079 effective HSP length: 83 effective length of query: 587 effective length of database: 350,979 effective search space: 206024673 effective search space used: 206024673 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719066|ref|YP_003874598.1| hypothetical protein STHERM_c13850 [Spirochaeta thermophila DSM 6192] (1137 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,229,922 Number of Sequences: 1700 Number of extensions: 58612 Number of successful extensions: 161 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 161 Number of HSP's gapped (non-prelim): 0 length of query: 1137 length of database: 492,079 effective HSP length: 87 effective length of query: 1050 effective length of database: 344,179 effective search space: 361387950 effective search space used: 361387950 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719067|ref|YP_003874599.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (351 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 386,001 Number of Sequences: 1700 Number of extensions: 18460 Number of successful extensions: 65 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65 Number of HSP's gapped (non-prelim): 0 length of query: 351 length of database: 492,079 effective HSP length: 78 effective length of query: 273 effective length of database: 359,479 effective search space: 98137767 effective search space used: 98137767 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719068|ref|YP_003874600.1| glycoside hydrolase family protein [Spirochaeta thermophila DSM 6192] (361 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 416,389 Number of Sequences: 1700 Number of extensions: 19557 Number of successful extensions: 48 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48 Number of HSP's gapped (non-prelim): 0 length of query: 361 length of database: 492,079 effective HSP length: 78 effective length of query: 283 effective length of database: 359,479 effective search space: 101732557 effective search space used: 101732557 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719069|ref|YP_003874601.1| beta and gamma crystallin [Spirochaeta thermophila DSM 6192] (156 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 159,566 Number of Sequences: 1700 Number of extensions: 6687 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 156 length of database: 492,079 effective HSP length: 70 effective length of query: 86 effective length of database: 373,079 effective search space: 32084794 effective search space used: 32084794 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719070|ref|YP_003874602.1| glucose-resistance amylase regulator [Spirochaeta thermophila DSM 6192] (344 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 349,224 Number of Sequences: 1700 Number of extensions: 15447 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 0 length of query: 344 length of database: 492,079 effective HSP length: 78 effective length of query: 266 effective length of database: 359,479 effective search space: 95621414 effective search space used: 95621414 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719071|ref|YP_003874603.1| glucosylceramidase [Spirochaeta thermophila DSM 6192] (467 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 575,849 Number of Sequences: 1700 Number of extensions: 29515 Number of successful extensions: 79 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79 Number of HSP's gapped (non-prelim): 0 length of query: 467 length of database: 492,079 effective HSP length: 80 effective length of query: 387 effective length of database: 356,079 effective search space: 137802573 effective search space used: 137802573 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719072|ref|YP_003874604.1| transporter [Spirochaeta thermophila DSM 6192] (341 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 108 1e-25 gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum... 62 2e-11 gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyru... 56 1e-09 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 108 bits (271), Expect = 1e-25 Identities = 67/250 (26%), Positives = 125/250 (50%), Gaps = 8/250 (3%) Query: 89 VFMDPQQPGEQIVWEGNWRTLDRVWKVDPQWSNFAEAWKATKFPVL--LKNTVLYAVITT 146 +FM +P +++ +G W +D + +D N+ +AW + V N+++ A+ T Sbjct: 36 LFMVSVRPYGEVIVKGWWNIVDATFTMD----NYIKAWSYDPYSVSGGYINSLIVALPAT 91 Query: 147 FGTVLSSLLVAYGFARFSFPGKNVLFVVLMSTIILPSAVTSIPTYAMFYFLGWVGTWLP- 205 V ++ AYGF+RFSFP K+ LF+V + + LP + +P + + LG + T+ Sbjct: 92 VIPVAAASFAAYGFSRFSFPLKSYLFLVTILLMALPQQIVVVPLFLLLKNLGLINTFPGI 151 Query: 206 LMVPAFFSNAYNVFLLRQFLMGIPRELDEAARIDGAGPLRTLFXXXXXXXXXXXXXVALF 265 ++V + + A+ +F ++ F +PRE++EAAR+DGA R + ++ Sbjct: 152 ILVHSAWGMAWIIFFMKNFFDILPREVEEAARVDGASDFRIFYKIVLPMSLPGILSASVL 211 Query: 266 HFFFAWNDFFGPLIYLSGKGDLYPISIGLTVFNNMYTSQNHLIQAAALIASVIPLVVFAF 325 F + W+ FF LI+L + I+ + Y LI A ++ A +PL V+ Sbjct: 212 QFTWVWSSFFFELIFLIDPSK-WVITQRIANMKGTYLVDWGLIAAGSVFAMAVPLAVYML 270 Query: 326 AQRVFMQRLI 335 QR +++ + Sbjct: 271 LQRYYIRGFV 280 >gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum pernix K1] Length = 270 Score = 62.0 bits (149), Expect = 2e-11 Identities = 43/195 (22%), Positives = 84/195 (43%), Gaps = 6/195 (3%) Query: 138 TVLYAVITTFGTVLSSLLVAYGFARFSFPGKNVLFVVLMSTIILPSAVTSIPTYAMFYFL 197 +V +T + L L Y AR+ FPG++ + + +++T + P V S+ F+ L Sbjct: 72 SVAVGAMTVGISFLLGLPGGYALARYVFPGRDAVKLAIIATRMFPIIVISVSLLKTFFNL 131 Query: 198 GWVGTWLPL-MVPAFFSNAYNVFLLRQFLMGIPRELDEAARIDGAGPLRTLFXXXXXXXX 256 G T + L + + + V + GIPR+L+EA I G + Sbjct: 132 GLNDTLIGLALAHTAMALPFVVIITGSIFGGIPRDLEEAGMIFGLSSIMVFLRITLPLAA 191 Query: 257 XXXXXVALFHFFFAWNDFFGPLIYLSGKGDLYPISIGLTVFNNMYTSQNHLIQAAALIAS 316 +F F +WN+ ++++ L ++ + N+ + + I+ AA Sbjct: 192 PGLTAAGMFTFLLSWNE-----VFMASVLTLVNRTLPAFILNSAFATPIEPIRFAAAFML 246 Query: 317 VIPLVVFAFAQRVFM 331 ++P +VF F R ++ Sbjct: 247 ILPALVFMFLARRYL 261 >gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyrum pernix K1] Length = 302 Score = 55.8 bits (133), Expect = 1e-09 Identities = 53/208 (25%), Positives = 82/208 (39%), Gaps = 17/208 (8%) Query: 138 TVLYAVITTFGTVLSSLLVAYGFARFSFPGKNVLFVVLMSTIILPSAVTSIPTYAMFYFL 197 T+ AV L SLL AY +R F G+ V L+ P I Y +F + Sbjct: 91 TLTVAVGVALTATLVSLLAAYSISRMEFKGRGVFTAGLIMLHAFPGVALIIGVYMIFRII 150 Query: 198 GWVGTWLPLMVPAFFSNAY------------NVFLLRQFLMGIPRELDEAARIDGAGPLR 245 G V L ++ F++ AY ++L + F IP EL+ +A +DGA +R Sbjct: 151 GDV---LGVLGEEFYAIAYIILARAALEVPMAIWLFKGFFDKIPWELEWSALVDGASRVR 207 Query: 246 TLFXXXXXXXXXXXXXVALFHFFFAWNDFFGPLIYLSGKG-DLYPISIGLTVFNNMYTSQ 304 + V +F F W +F ++L G D P I + Q Sbjct: 208 VWWSILVPLVKPGIAAVLIFTFLAGWEEFIYFYVFLKPFGIDSLPTFIE-EIVAAAENYQ 266 Query: 305 NHLIQAAALIASVIPLVVFAFAQRVFMQ 332 +I AA + +V F QR+ ++ Sbjct: 267 LTIIAAAGTFYLLPTIVFFVLTQRLLLE 294 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.141 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 313,261 Number of Sequences: 1700 Number of extensions: 12490 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 3 length of query: 341 length of database: 492,079 effective HSP length: 77 effective length of query: 264 effective length of database: 361,179 effective search space: 95351256 effective search space used: 95351256 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719073|ref|YP_003874605.1| transporter [Spirochaeta thermophila DSM 6192] (314 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 75 3e-15 gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum... 49 2e-07 gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyru... 47 8e-07 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 74.7 bits (182), Expect = 3e-15 Identities = 69/278 (24%), Positives = 123/278 (44%), Gaps = 17/278 (6%) Query: 14 YRWGLAFIAPWLLGFLIFYLFPMVASFVFSL-LDFSLADPGATTFVGFVNWRRAFV---- 68 Y L F+ P IF + P +A+ SL +D + V + +A + Sbjct: 8 YFKALVFLLPAFTFITIFVIAPSIATVYLSLNVDGHINLEKYAEVVSERSPDKALIMITS 67 Query: 69 --EDPEVLASVGRILLFALISLPIGMLFALAVALLLHSRYLLGTRAFRTLFYLPSIVPFV 126 E P A + I+ AL +P+ L +A LL +Y G+ +T+ ++ ++P V Sbjct: 68 RPESPPWGALIHNIIWMAL-HIPLVTFLGLFLAYLL--KYTFGSSIVKTIVFIGMVIPMV 124 Query: 127 AAVIIWQGVLNEHTGWINLAIEGITGLDVTGTDGIRWLADPRLIYFTYTLIGLW-GLGNT 185 +I + + +E+ G + L + + G+D W P+L + L +W G + Sbjct: 125 VGGLIVRFMFDEYVGVVPLVFKAL-GVDFLAKT---WTNYPQLSLLSLILGSVWLWTGFS 180 Query: 186 IIIFLAGLQGIPIELYEAAQIDGAGPAQRFFSVTLPLITPVVFYNVVIGVIGLMQYFLPP 245 + ++ A L IP EAA+IDGAG F+ + PL+ P VV+ ++ ++ F Sbjct: 181 LTVYSAALGSIPSSFIEAARIDGAGHWHIFWKIVFPLVRPATIIVVVMTMLWDLKIFDIV 240 Query: 246 YVINMGSGFPNGMTNFPMIYFYRQAFTYLNMGYGAVIA 283 YV +G P G +N + Y+ L+ + +A Sbjct: 241 YVATLGG--PGGSSNVLALVMYQYMARALDYQAASAVA 276 >gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum pernix K1] Length = 288 Score = 48.5 bits (114), Expect = 2e-07 Identities = 54/239 (22%), Positives = 104/239 (43%), Gaps = 32/239 (13%) Query: 21 IAPWLLGFLIFYLFPMVASFVFSLLDFSLADPGATTFVGFVNWRRAFVEDPEVLASVGRI 80 ++P +L +F +P++ SF + + A F+ + E +++ Sbjct: 18 LSPTILYLAVFIAYPIIDSFRIAFVKNGSISFEAVDFL-------LYSPLSEFWSALKYT 70 Query: 81 LLFALISLPIGMLFALAVALLLHSRYLLGTRAFRTLFYLPSIVPFVAAVIIWQGVLNEHT 140 L A++ +P L AL +LL R+ G A + +P + +AA +IW +L Sbjct: 71 FLLAILVIPTETLLALTAVILLFKRFR-GRDAVIYVLVMPLALSDLAAGLIWYSMLTGK- 128 Query: 141 GWINLAIEGITGLDVTGTDGIRWLADPRLIYFTYT----------LIGLW-GLGNTIIIF 189 G++N + + GL ++DP +I+F Y L +W +I Sbjct: 129 GFLNKLLLNM-GL----------ISDP-IIFFGYENRWLTFLAVYLAEVWRSTAIVFVIL 176 Query: 190 LAGLQGIPIELYEAAQIDGAGPAQRFFSVTLPLITPVVFYNVVIGVIGLMQYFLPPYVI 248 AG Q I E++EAA++ GA + + +P+I P + ++I + Q F +++ Sbjct: 177 FAGAQLINKEVFEAAEVFGASFYVKLRHILIPMIKPSLQAALLIRTLFAFQVFAVVWIL 235 >gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyrum pernix K1] Length = 314 Score = 46.6 bits (109), Expect = 8e-07 Identities = 50/228 (21%), Positives = 101/228 (44%), Gaps = 11/228 (4%) Query: 20 FIAPWLLGFLIFYLFPMVASFVFSLLDFSLADPGATTF--VGFVNWRRA--FVE-DPEVL 74 F+ P LL + F+ P++ + S + + A F VG N++ F + DP Sbjct: 12 FLGPALLIVITFFFLPLLLTVYTSFTNMRNWNVDAYLFDIVGLYNYKVLVHFAKYDPMFR 71 Query: 75 ASVGRILLFALISLPIGMLFALAVALLLHSRYLLGTRAFRTLFYLPSIVPFVAAVIIWQG 134 ++ ++F ++L + +L L +A+L + +R L+ LP + P ++W Sbjct: 72 NALITTVVFVAVTLVVNVLGGLTLAILTFFLEERISIHYRLLWLLPRMTPVAVYSLLWYY 131 Query: 135 VLNEHT-GWIN--LAIEGITGLDVTGTDGIRWLADPRLIYFTYTLIGLWGLGNTIIIFLA 191 + G +N L + G+ + + L ++ F GL G+ +I+F + Sbjct: 132 FFHSDAIGTLNRILLLAGVIDKPINWGSYMLPLGTWWILIFVN---GLVGVSFGMIVFYS 188 Query: 192 GLQGIPIELYEAAQIDGAGPAQRFFSVTLPLITPVVFYNVVIGVIGLM 239 ++ IP E AA++DGA + +P+I + + V ++ L+ Sbjct: 189 AIRSIPWEYIAAARVDGASNLVIIRRIIVPMIRWHLLFVTVWQMLSLL 236 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.147 0.483 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 351,523 Number of Sequences: 1700 Number of extensions: 16149 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 4 length of query: 314 length of database: 492,079 effective HSP length: 77 effective length of query: 237 effective length of database: 361,179 effective search space: 85599423 effective search space used: 85599423 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719074|ref|YP_003874606.1| sugar ABC transporter substrate-binding protein [Spirochaeta thermophila DSM 6192] (454 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 498,476 Number of Sequences: 1700 Number of extensions: 23405 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 0 length of query: 454 length of database: 492,079 effective HSP length: 80 effective length of query: 374 effective length of database: 356,079 effective search space: 133173546 effective search space used: 133173546 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719075|ref|YP_003874607.1| glycoside hydrolase family protein [Spirochaeta thermophila DSM 6192] (693 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 764,894 Number of Sequences: 1700 Number of extensions: 37480 Number of successful extensions: 112 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112 Number of HSP's gapped (non-prelim): 0 length of query: 693 length of database: 492,079 effective HSP length: 83 effective length of query: 610 effective length of database: 350,979 effective search space: 214097190 effective search space used: 214097190 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719076|ref|YP_003874608.1| hypothetical protein STHERM_c13950 [Spirochaeta thermophila DSM 6192] (679 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 798,762 Number of Sequences: 1700 Number of extensions: 39968 Number of successful extensions: 99 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99 Number of HSP's gapped (non-prelim): 0 length of query: 679 length of database: 492,079 effective HSP length: 83 effective length of query: 596 effective length of database: 350,979 effective search space: 209183484 effective search space used: 209183484 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719077|ref|YP_003874609.1| hypothetical protein STHERM_c13960 [Spirochaeta thermophila DSM 6192] (184 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.130 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 180,849 Number of Sequences: 1700 Number of extensions: 6894 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 184 length of database: 492,079 effective HSP length: 72 effective length of query: 112 effective length of database: 369,679 effective search space: 41404048 effective search space used: 41404048 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719078|ref|YP_003874610.1| hypothetical protein STHERM_c13970 [Spirochaeta thermophila DSM 6192] (396 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.140 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 423,892 Number of Sequences: 1700 Number of extensions: 21050 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 396 length of database: 492,079 effective HSP length: 79 effective length of query: 317 effective length of database: 357,779 effective search space: 113415943 effective search space used: 113415943 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719079|ref|YP_003874611.1| hypothetical protein STHERM_c13980 [Spirochaeta thermophila DSM 6192] (193 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.312 0.128 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 164,968 Number of Sequences: 1700 Number of extensions: 6378 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 193 length of database: 492,079 effective HSP length: 72 effective length of query: 121 effective length of database: 369,679 effective search space: 44731159 effective search space used: 44731159 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719080|ref|YP_003874612.1| alpha-glucosidase [Spirochaeta thermophila DSM 6192] (473 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 530,160 Number of Sequences: 1700 Number of extensions: 25427 Number of successful extensions: 70 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 0 length of query: 473 length of database: 492,079 effective HSP length: 80 effective length of query: 393 effective length of database: 356,079 effective search space: 139939047 effective search space used: 139939047 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719081|ref|YP_003874613.1| protein-L-isoaspartate O-methyltransferase [Spirochaeta thermophila DSM 6192] (207 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431301|ref|NP_147666.2| protein-L-isoaspartate O-methyltra... 154 1e-39 gi|118431895|ref|NP_148643.2| tRNA (m1A) methyltransferase [Aero... 44 3e-06 >gi|118431301|ref|NP_147666.2| protein-L-isoaspartate O-methyltransferase [Aeropyrum pernix K1] Length = 260 Score = 154 bits (390), Expect = 1e-39 Identities = 82/169 (48%), Positives = 114/169 (67%), Gaps = 2/169 (1%) Query: 6 LIRLLEREG-IHDRRILDAIDKVPREEFVPPAQRQYAYENIPLEIGWGQTISQPYTVAFM 64 ++ L R G + RR+L+A+ +VPR FVPP R AYE+ PL IG GQTIS P V M Sbjct: 41 MVEQLRRSGLVTSRRVLEAMARVPRHLFVPPEYRGMAYEDRPLPIGHGQTISAPGVVGRM 100 Query: 65 IQLLELRPGLKVLEVGGGSGYNAAVMWEVMDRTGDLYSMEIHPEVYRMGKANLERTGYT- 123 +QLL+ +PG KVL+VG GSGY +A++ E++ G +Y++E PE+ + NLE+TGY Sbjct: 101 LQLLDPQPGEKVLDVGAGSGYQSALLAELVTPGGRVYAVERIPELAEYARENLEKTGYRG 160 Query: 124 EINFMLGDGSKGLPEEAPFDRIVVTAAAEETPSTLLSQLGEGGILVIPV 172 + ++GDGSKGLP+ AP+ RI V AAA + P L+ QL GG +VIP+ Sbjct: 161 VVEVVVGDGSKGLPQHAPYHRIKVAAAAPKPPKPLVEQLAPGGRMVIPI 209 >gi|118431895|ref|NP_148643.2| tRNA (m1A) methyltransferase [Aeropyrum pernix K1] Length = 253 Score = 43.9 bits (102), Expect = 3e-06 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Query: 67 LLELRPGLKVLEVGGGSGYNAAVMWEVMDRTGDLYSMEIHPEVYRMGKANLERTGYTE-I 125 L+ RPG ++LE G GSG+ V+ + TG L +E+ E + NLE G + + Sbjct: 84 LVGARPGARLLEAGVGSGFMTTVLAMGLCPTGRLIGLEVRSENLETARRNLEAAGLLDCV 143 Query: 126 NFMLGDGSKGLPEE--APFDRIVV 147 + LGD E PFD +V+ Sbjct: 144 DLRLGDVRNPASVEGLGPFDGVVL 167 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 242,808 Number of Sequences: 1700 Number of extensions: 11607 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 2 length of query: 207 length of database: 492,079 effective HSP length: 73 effective length of query: 134 effective length of database: 367,979 effective search space: 49309186 effective search space used: 49309186 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719082|ref|YP_003874614.1| hypothetical protein STHERM_c14010 [Spirochaeta thermophila DSM 6192] (249 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 261,495 Number of Sequences: 1700 Number of extensions: 11279 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 0 length of query: 249 length of database: 492,079 effective HSP length: 75 effective length of query: 174 effective length of database: 364,579 effective search space: 63436746 effective search space used: 63436746 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719083|ref|YP_003874615.1| hypothetical protein STHERM_c14020 [Spirochaeta thermophila DSM 6192] (746 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.140 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 771,289 Number of Sequences: 1700 Number of extensions: 36280 Number of successful extensions: 167 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 167 Number of HSP's gapped (non-prelim): 0 length of query: 746 length of database: 492,079 effective HSP length: 84 effective length of query: 662 effective length of database: 349,279 effective search space: 231222698 effective search space used: 231222698 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719084|ref|YP_003874616.1| hypothetical protein STHERM_c14030 [Spirochaeta thermophila DSM 6192] (111 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,962 Number of Sequences: 1700 Number of extensions: 3025 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 111 length of database: 492,079 effective HSP length: 65 effective length of query: 46 effective length of database: 381,579 effective search space: 17552634 effective search space used: 17552634 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719085|ref|YP_003874617.1| peptidase, M48 family [Spirochaeta thermophila DSM 6192] (312 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431311|ref|NP_147683.2| zinc metalloprotease HtpX [Aeropyr... 53 1e-08 >gi|118431311|ref|NP_147683.2| zinc metalloprotease HtpX [Aeropyrum pernix K1] Length = 319 Score = 52.8 bits (125), Expect = 1e-08 Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 6/172 (3%) Query: 96 PLSRWEAPEVYRLLDLLSERAGIPQVPQLYLVPSPLMNALTTG-PAERPVIVVTDTLLSS 154 P W EV + L+ R+G+ + P++ + + NA G P + VT LL Sbjct: 68 PGEEWIVAEV----EQLARRSGL-KPPKVVVSEMNMPNAFAYGSPIAGSYVAVTRGLLRL 122 Query: 155 LPPRELAGVLAHEIAHIRNGDLTLFRMVEIVRQFTEMVSQAGWXXXXXXXXXXXXXARQV 214 LP E+ VLAHE+ H+++ D+T+ + ++ ++ + + Sbjct: 123 LPKDEVRAVLAHEVGHLKHRDVTVILALSLIPIAAFLIGRTLVWAGILGGGGGERRGNPM 182 Query: 215 QPLSFFLFMVASPIXXXXXXXXXQRTREFQADLTAAELTGDPQGLAMALYRI 266 ++ ++A+ + R RE+ AD +A +TG P+ L AL RI Sbjct: 183 ALVAVGAALLAAGMVFQLIVSHFNRLREYYADAHSALVTGSPRSLQRALARI 234 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.139 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 240,561 Number of Sequences: 1700 Number of extensions: 8280 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 1 length of query: 312 length of database: 492,079 effective HSP length: 77 effective length of query: 235 effective length of database: 361,179 effective search space: 84877065 effective search space used: 84877065 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719086|ref|YP_003874618.1| hypothetical protein STHERM_c14050 [Spirochaeta thermophila DSM 6192] (89 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,311 Number of Sequences: 1700 Number of extensions: 3705 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 89 length of database: 492,079 effective HSP length: 58 effective length of query: 31 effective length of database: 393,479 effective search space: 12197849 effective search space used: 12197849 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719087|ref|YP_003874619.1| glutaminyl-tRNA synthetase [Spirochaeta thermophila DSM 6192] (569 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431827|ref|NP_148534.2| glutamyl-tRNA synthetase [Aeropyru... 187 8e-49 >gi|118431827|ref|NP_148534.2| glutamyl-tRNA synthetase [Aeropyrum pernix K1] Length = 574 Score = 187 bits (474), Expect = 8e-49 Identities = 140/398 (35%), Positives = 202/398 (50%), Gaps = 35/398 (8%) Query: 31 VRTRFPPEPNGYLHIGHAKSIVLNFSLAEKYGGTCNLRFDDTNPEKET--EEYVRAIMED 88 V+ RF P P+ +H+G+A+ ++N A Y G LRF+DT+P +T E I +D Sbjct: 103 VKLRFAPNPDFVIHMGNARPAIVNHEYARMYKGRMVLRFEDTDPRTKTPLREAYDLIRQD 162 Query: 89 VRWLGFDWGDRLYFASDYFDRMYELAVRLIKVGKAYVDH---STPEEISRMRGVPTEPGI 145 ++WLG W D Y S + Y +A R I+ G AYVD+ E +SR PT Sbjct: 163 LKWLGVSW-DEEYIQSLRMEVFYSVARRAIERGCAYVDNCGREGKELLSRGEYCPT---- 217 Query: 146 PSPYRDRSVEENLELFEKMRRGEFEEGECVLRAKIDMSSPNMHLRDPVMYRI---KKVSH 202 RD E+NLELFEKM GEF EGE V+R K D PN LRD V RI +K H Sbjct: 218 ----RDLGPEDNLELFEKMLEGEFYEGEAVVRMKTDPRHPNPSLRDWVAMRIIDTEKHPH 273 Query: 203 YRQGDRWCIYPTYDWAHGLEDAFEGITHSICTLEFEVHRPLYDWFLDQLPDIPHPKQIEF 262 G R+ ++PTY++A ++D ITH + E +++ + P P I F Sbjct: 274 PLVGSRYLVWPTYNFAVSVDDHMMEITHVLRGKEHQLNTEKQLAVYRCMGWRP-PYFIHF 332 Query: 263 ARLNLTHTVMSKRLLTQLVQE--GYVDGWDDPRLPTIAGLRRRGFTPSSIRTFCYRIGVS 320 RL L ++SK + +L++E G G+DDPR TIAGLRRRG +IR +GV Sbjct: 333 GRLKLEGFILSKSKIRKLLEERPGEFMGYDDPRFGTIAGLRRRGVLAEAIRQIILEVGVK 392 Query: 321 KVESVVDMAFLEAVIREELNKTAPRRMAVLEPVKLVITNYPEDEVEWLEAENNPEDPSAG 380 ++ + A L A R+ L++ A R M V +PV++ + + E E +P P Sbjct: 393 PTDATISWANLAAANRKLLDERADRIMYVEDPVEMEV-ELAQVECRAAEIPFHPSRPQR- 450 Query: 381 TRLVPFCR--ELYIEREDFMEDPPPKYYRLAPGREVRL 416 R + C ++ + RED +E GR++RL Sbjct: 451 KRRITLCTGDKVLLTREDAVE-----------GRQLRL 477 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 629,421 Number of Sequences: 1700 Number of extensions: 29619 Number of successful extensions: 72 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66 Number of HSP's gapped (non-prelim): 1 length of query: 569 length of database: 492,079 effective HSP length: 82 effective length of query: 487 effective length of database: 352,679 effective search space: 171754673 effective search space used: 171754673 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719088|ref|YP_003874620.1| dehydrogenase/reductase SDR family member 8 precursor [Spirochaeta thermophila DSM 6192] (271 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum... 74 3e-15 gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] 60 6e-11 >gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum pernix K1] Length = 250 Score = 74.3 bits (181), Expect = 3e-15 Identities = 65/221 (29%), Positives = 99/221 (44%), Gaps = 14/221 (6%) Query: 10 LITGAASGFGRLFAVRVAREGGHLVLLDRDAAGL-EEAAASCRGYGV-RVFPYVVDLSSR 67 L+TG + G GR +R AREG +V+ + A L E+ A R G + VD+ Sbjct: 7 LVTGGSRGIGRATVLRFAREGWSVVIAYKSRADLAEKTAEEARRLGSPEAYTVRVDVGDP 66 Query: 68 DEIFRTAERIKAEAGAVDILVNNAGVVTGTSFREAPVEKIEATFAVNTLAHFWLVKAFLE 127 D + + R+ +++LVN AGV+ E + + E T VN + + K L Sbjct: 67 DSVTEMSSRVGELIPHLNVLVNAAGVLQLGGIEETSISEWEETLRVNLTGVYLVTKLLLP 126 Query: 128 EMIARNRGHIVTISSAAGIIG-VRRLADYCASKFAVFGFTEALRMEFKKEGLRIKTTIVA 186 + IV ++S AG G V Y ASK V G T+ L ++ G+R+ VA Sbjct: 127 LLRKAKWASIVNVASIAGETGNVVAGVAYSASKAGVIGLTKRLAVQLAGYGIRVNA--VA 184 Query: 187 PYYAKTGMFEGV------KTRVPWMLPL---LEPEYVVARI 218 P + +T M + R+ + PL L+PE V I Sbjct: 185 PSFVETDMTRSFLDTPEKRERIASLHPLKIILKPEDVAEAI 225 >gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] Length = 260 Score = 60.1 bits (144), Expect = 6e-11 Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 3/183 (1%) Query: 4 IGGARTLITGAASGFGRLFAVRVAREGGHLVLLDRDAAGLEEAAASCRGY--GVRVFPYV 61 I G ++T +SG G A+ +AR G L+L R+ LE AA+ G +V Sbjct: 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVA 64 Query: 62 VDLSSRDEIFRTAERIKAEAGAVDILVNNAGVVTGTSFREAPVEKIEATFAVNTLAHFWL 121 D+ +I R E+ + + G DILV + G F E VE + ++ + + W+ Sbjct: 65 GDIREPGDIDRLFEKAR-DLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWV 123 Query: 122 VKAFLEEMIARNRGHIVTISSAAGIIGVRRLADYCASKFAVFGFTEALRMEFKKEGLRIK 181 + E+M+ + G +V I S + + LA + V G L +E G+ + Sbjct: 124 GRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHGVTVN 183 Query: 182 TTI 184 + Sbjct: 184 AVL 186 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.139 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 263,921 Number of Sequences: 1700 Number of extensions: 11200 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 2 length of query: 271 length of database: 492,079 effective HSP length: 75 effective length of query: 196 effective length of database: 364,579 effective search space: 71457484 effective search space used: 71457484 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719089|ref|YP_003874621.1| aldehyde dehydrogenase 22A1 precursor [Spirochaeta thermophila DSM 6192] (531 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431591|ref|NP_148165.2| NADP-dependent glyceraldehyde-3-ph... 138 4e-34 gi|118431207|ref|NP_147509.2| delta-1-pyrroline-5-carboxylate de... 69 2e-13 >gi|118431591|ref|NP_148165.2| NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [Aeropyrum pernix K1] Length = 510 Score = 138 bits (347), Expect = 4e-34 Identities = 99/346 (28%), Positives = 159/346 (45%), Gaps = 11/346 (3%) Query: 125 ITREPWGVVGVISPWNYPFAIPFSEVVCALLAGNGVVLKTASISQLVAHRLAGCFERADL 184 + REP+GVV I P+NYP ++ V + + GN ++K S L A A Sbjct: 161 VRREPYGVVLAIIPFNYPLFDTVNKFVYSTIPGNAFIVKPPSADPLPVIMFARLAIEAGF 220 Query: 185 PEGLFSLVNVPGRVAEECFLGQGGVDKLCFTGSXXXXXXXXXXXXXXXXPVVLELGGNDP 244 P + + G AE+ + + + TGS +++ELGG DP Sbjct: 221 PPESLMIATLRGSEAEK-LVADRRISVISLTGSSETGVKVMRSAGIKQ--LIMELGGGDP 277 Query: 245 ALVLEDADLDRAAWGIAWAGFQNAGQSCGGVERVYVQEGVYEAFLERLAGVLEGLRYGLD 304 A+VL DADL AA IA +GQ C ++ V V+E VY + L L ++ G Sbjct: 278 AIVLADADLKSAASKIATGITSYSGQRCDAIKLVLVEEPVYNEMKKLLVEELSKIKVGDP 337 Query: 305 GRVENDLAGLSTEEQARVVREHVEDALARGARVYYRKGIPEPWAGHPLSVPPTVLVE--- 361 + L +E + E +E+A++RGA++ Y G P V VE Sbjct: 338 RNDSTTMGPLIDKEAVDAMVEAIEEAVSRGAKLLY----GGERIGDTYITPALVEVEDKN 393 Query: 362 VDHSMRVMREETFGPVVGVMRVGSVEEGVRLANEGGMGLTASVWSRDRRKALRIARMLEA 421 V +++ ++E F PV + +++E + LAN GL A+++ + ++ R LE Sbjct: 394 VLRELKLYKDEVFAPVAVITSFSTLDEAIELANGRRYGLDAAIFGESMARIRKLIRFLEV 453 Query: 422 GVVTVNDHLMSHGLPQAPWGGWKDSGLGWTHGRRGFEEMVRLKVLV 467 G + +N++ HG+ P+GG KDSG+G E + LK +V Sbjct: 454 GAIYINEY-PRHGIGYYPFGGRKDSGIGREGIGYSIEYVTALKTIV 498 >gi|118431207|ref|NP_147509.2| delta-1-pyrroline-5-carboxylate dehydrogenase [Aeropyrum pernix K1] Length = 540 Score = 69.3 bits (168), Expect = 2e-13 Identities = 95/412 (23%), Positives = 159/412 (38%), Gaps = 51/412 (12%) Query: 97 YYCRMAPRWLKDERPGGASVILAHKRVRITREPW----GVVGVISPWNYPFAIPFSEVVC 152 YY R ++ PG + R W G V + P+N+ F+I + Sbjct: 151 YYARFIFEQQPEQAPG-----------ELNRVEWRPLEGFVFAVPPFNF-FSIGGNLPTA 198 Query: 153 ALLAGNGVVLKTASISQLVAHRLAGCFERADLPEGLFSLVNVPGRVAEECFLGQGGVDKL 212 L GN + K + + + A LP G+ + V + + L L Sbjct: 199 PALVGNVSIWKPSRWVIYSNYIIMRILMEAGLPPGVVNFVPFNTKYSS-IVLSHPDFAGL 257 Query: 213 CFTGSXXXXXXXXXXXXXXXXP------VVLELGGNDPALVLEDADLDRAAWGIAWAGFQ 266 FTGS +V E GG D +V AD+ A F+ Sbjct: 258 HFTGSYSTFVRLWKMIAQNLDKYRNFPRIVGETGGKDFIVVHPSADITEAVVATIRGAFE 317 Query: 267 NAGQSCGGVERVYVQEGVYEAFLERLAGVLEGLRYGLDGRVENDLAGLSTEEQARVVREH 326 GQ C R++V + ++ F E + L+ ++ G + + +EEQ R + + Sbjct: 318 YQGQKCSAASRLFVPKSMWPRFWEAMKAELDKVKVGPVDDFTVFMGAIISEEQFRKIVSY 377 Query: 327 VEDALARGARVYYRKGIPEPWA---------GHPLSVPPTVLVEVDHSMRVMREETFGPV 377 +E Y K PE + + PTV++ + ++M EE FGPV Sbjct: 378 IE----------YAKQHPEEYQIIYGGKYDDSKGYFIWPTVVLTNNPKGKLMTEEIFGPV 427 Query: 378 --VGVMRVGSVEEGVRLANEGG-MGLTASVWSRDRRKALRIARMLE--AGVVTVNDHLMS 432 V V +E + + ++ GLT SV+++DR L+ + L AG +ND Sbjct: 428 LTVYVYDDDKYDEILWVVDKAAPYGLTGSVFAKDREAILKAEKALRYAAGNFYINDKPTG 487 Query: 433 HGLPQAPWGGWKDSGLGWTHGRRG-FEEMVRLKVLVDDVLSRLPKQVWWHPY 483 + + P+GG + SG T+ + G F ++R + +P + W PY Sbjct: 488 SIVARQPFGGARWSG---TNDKAGWFTNLLRWLNPRSIKETLVPPKEWRRPY 536 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 529,871 Number of Sequences: 1700 Number of extensions: 24770 Number of successful extensions: 94 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 88 Number of HSP's gapped (non-prelim): 2 length of query: 531 length of database: 492,079 effective HSP length: 81 effective length of query: 450 effective length of database: 354,379 effective search space: 159470550 effective search space used: 159470550 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719090|ref|YP_003874622.1| hypothetical protein STHERM_c14090 [Spirochaeta thermophila DSM 6192] (1008 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,053,085 Number of Sequences: 1700 Number of extensions: 50083 Number of successful extensions: 195 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 195 Number of HSP's gapped (non-prelim): 0 length of query: 1008 length of database: 492,079 effective HSP length: 86 effective length of query: 922 effective length of database: 345,879 effective search space: 318900438 effective search space used: 318900438 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719091|ref|YP_003874623.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein [Spirochaeta thermophila DSM 6192] (381 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 403,382 Number of Sequences: 1700 Number of extensions: 18933 Number of successful extensions: 70 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 0 length of query: 381 length of database: 492,079 effective HSP length: 78 effective length of query: 303 effective length of database: 359,479 effective search space: 108922137 effective search space used: 108922137 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719092|ref|YP_003874624.1| hypothetical protein STHERM_c14110 [Spirochaeta thermophila DSM 6192] (528 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 521,571 Number of Sequences: 1700 Number of extensions: 23231 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 0 length of query: 528 length of database: 492,079 effective HSP length: 81 effective length of query: 447 effective length of database: 354,379 effective search space: 158407413 effective search space used: 158407413 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719093|ref|YP_003874625.1| hypothetical protein STHERM_c14120 [Spirochaeta thermophila DSM 6192] (630 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601325|ref|NP_147860.1| fatty-acid--CoA ligase [Aeropyrum p... 191 6e-50 gi|118431813|ref|NP_148513.2| long-chain-fatty-acid--CoA ligase ... 86 4e-18 gi|118431020|ref|NP_147199.2| medium-chain-fatty-acid--CoA ligas... 73 2e-14 gi|14601327|ref|NP_147862.1| fatty-acid--CoA ligase [Aeropyrum p... 69 3e-13 >gi|14601325|ref|NP_147860.1| fatty-acid--CoA ligase [Aeropyrum pernix K1] Length = 651 Score = 191 bits (484), Expect = 6e-50 Identities = 176/638 (27%), Positives = 279/638 (43%), Gaps = 57/638 (8%) Query: 6 PHLLKVQAETHPESIAQYVRQPEGGFTPITYRQLLEDVLTCAAGFAALGIGKGDLVALIS 65 P LL+ +A T P +A + + G + T+R V A LG+G GD A I+ Sbjct: 24 PWLLEWRARTQPGRVA-FRWKRYGIWRRYTWRDYYLRVAYAALALENLGLGPGDTGAFIT 82 Query: 66 ENRREWLLVDMGLLFLGAADVPRGCDVTEKELEHILLTAECSIGVFENLVQLKKALASER 125 NR W++ ++G+ LG + D E+ ++L + + + E QL + L S Sbjct: 83 FNRPSWVIYEVGVQLLGGRAMGIYRDSLSDEVGYLLDSGDAKFVLVEGQEQLDRVLDSG- 141 Query: 126 IRHRLKTAVLFDMPPRIEGEREGL---------TVLSFHQLMERGAQALP-GMRDHILAA 175 D+ I E +GL +++F +M G + G + Sbjct: 142 ----------VDVDKIIVDEAKGLHQYRGMVGSKLVTFGDVMRLGRKLYSDGGDQQVKKL 191 Query: 176 AEELPASTLATVIFTSGTTGLPKGVMLSHGNFLHQVKGVPILLKVGPGDIWLSVLPVWHS 235 EL + + TSGTTGLPK M+S N L + + V ++S LP Sbjct: 192 MGELEPDMVCGLFTTSGTTGLPKLAMISFKNMLAMAHQLNTVDPVREDWEYVSFLPTAWI 251 Query: 236 FERMMQYVALSSASAIAYSKPIGRIMLQDMATLKPTWMASVPRIWEGIRKGILQTIKKEP 295 E+MM + +D + P +M S PR+WE I K I+ + Sbjct: 252 GEQMMSIPYHMIGGFKVNFPETPHTLWRDFREIAPHFMFSPPRVWERIAKDIMARVDDAD 311 Query: 296 PLVQAIFQASLVVGRAYAFFAHMVKGELPRFRWRPRILDRMAGLIPFLLLWPFKQLAHLL 355 P+ +A F+ + +G A +VKG R RP L R LA+ L Sbjct: 312 PIKRAAFRLAYKIGYEAAR-RRLVKG-----RSRPPTLWRA-----------LYYLAYWL 354 Query: 356 VFRKLHRKLG-GRFVAGISGGGALPPEVDGFFDAIGITVLEGYGLTEAAPVLAVRSYYHP 414 R + K G R V +GG + + F+ ++G+ + + YG TE A + V Sbjct: 355 ALRAVLDKAGLKRIVRAYTGGAMIGEDYVIFYHSLGVNLKQIYGQTEVAGIAVVHPDDDV 414 Query: 415 VPHTVGPVFPDTEIQIRDEEGNVLPPGRQGTVFARGGQVMLGYLKAPEETRKVLDEEGWL 474 P TVG P TE++I ++ G + R +M GY K E T K + +GWL Sbjct: 415 RPDTVGKPLPLTEVKIAED----------GEILMRSPAMMKGYYKNEEATAKTI-VDGWL 463 Query: 475 NTGDLGMLTWDNELAITGRAKDTIVLRGGENVEPAPLEQALKEHPLVAHAMVVGQDEKYL 534 TGD+G+LT D L + RAK+ I+L G V P ++ LK P + A +VG + YL Sbjct: 464 RTGDVGVLTEDGHLKVLDRAKEIIILSDGTKVAPQVIQNKLKFSPYIGEAAIVGSGKPYL 523 Query: 535 GALIFVDQEGLKEWCTDHGLEIT--EDIHRHPRLMEEFSDFISHRIHPRHGFKPFERIYR 592 AL+ +D E + W + T D+ + P +++ I +++ R K ERI R Sbjct: 524 AALVNIDFEIVSRWAERRRIPFTSYSDLSQKPEVLQLLKREI-EKVNRRLPEK--ERIRR 580 Query: 593 F-TLLPNTLTVGEELSAKQEIKRHVVYRKYADEIRALY 629 F +L EE++ ++++R V+ +YA I A+Y Sbjct: 581 FVSLFKEFHPDDEEMTRTRKLRRMVIESRYAGLIEAIY 618 >gi|118431813|ref|NP_148513.2| long-chain-fatty-acid--CoA ligase [Aeropyrum pernix K1] Length = 550 Score = 85.5 bits (210), Expect = 4e-18 Identities = 60/163 (36%), Positives = 78/163 (47%), Gaps = 7/163 (4%) Query: 372 ISGGGALPPEV-DGFFDAIGITVLEGYGLTEAAPVLAVRSYYHPVPH-TVGPVFPDTEIQ 429 ISG LP V + F + G + EGYGLTE +PV V + ++G P T Sbjct: 313 ISGAEPLPKAVAERFMEITGAKLREGYGLTETSPVTHVNPIMGEARYGSIGIPVPSTVAA 372 Query: 430 IRDEEGN-VLPPGRQGTVFARGGQVMLGYLKAPEETRKVLDE---EGWLNTGDLGMLTWD 485 + D E +L PG+ G + G QVM GY PEE KV E WL TGD+ + D Sbjct: 373 VADPESPAILEPGQVGELVVSGPQVMKGYYNRPEENEKVFFECCGLRWLRTGDMARMDED 432 Query: 486 NELAITGRAKDTIVLRGGENVEPAPLEQALKEHPLVAHAMVVG 528 I R KD I + G +V P +E+ L H V A V+G Sbjct: 433 GYFYIVDRKKDIIKYK-GYSVFPREIEEVLYRHECVREAAVIG 474 Score = 67.0 bits (162), Expect = 1e-12 Identities = 60/243 (24%), Positives = 106/243 (43%), Gaps = 20/243 (8%) Query: 54 GIGKGDLVALISENRREWLLVDMGLLFLGAADVPRGCDVTEKELEHILLTAECSIGVFEN 113 G+GKGD+V L N ++ + G L GA P + +E+ H L + + Sbjct: 60 GVGKGDVVGLFLPNSPQFAIAFYGALIAGAIVSPMNVLYSPREIRHQLSDNKARV----- 114 Query: 114 LVQLKKALASERIRHRLKTAVLFDMPPRIEGEREGLTVLSFHQLMERGAQALPGMRDHIL 173 LV L + +R+ L ++V + I+ GL L + + + G+ Sbjct: 115 LVALD--MFKDRVLAGLPSSVEEVLWTGIQDYLPGLKALLYKLFKKPPSPPKGGIHKKFT 172 Query: 174 AAAEELPAST---------LATVIFTSGTTGLPKGVMLSHGNFLHQVKGVPILLKVG--P 222 A + P + +A +++T GTTG PKG ML+H N L V + K G Sbjct: 173 DALKHEPIDSKPEINPHEDVAALMYTGGTTGTPKGAMLTHRNLLANVLQIDAWFKRGVRG 232 Query: 223 GDIWLSVLPVWHSF--ERMMQYVALSSASAIAYSKPIGRIMLQDMATLKPTWMASVPRIW 280 D+++ LP +H + ++ +A+ I Y++P +++D+ K T VP ++ Sbjct: 233 KDVFVGALPWFHIYGLTAVLNSGVQKAATIIVYARPNIEEIMRDIERYKATVFHGVPTLY 292 Query: 281 EGI 283 I Sbjct: 293 RMI 295 >gi|118431020|ref|NP_147199.2| medium-chain-fatty-acid--CoA ligase [Aeropyrum pernix K1] Length = 555 Score = 73.2 bits (178), Expect = 2e-14 Identities = 55/169 (32%), Positives = 78/169 (46%), Gaps = 16/169 (9%) Query: 372 ISGGGALPPEVDGFFDAIGITVLEGYGLTEAAPVLAVRSY-------YHPVPHTVGPVFP 424 ++GG ALP + GI V+ GYG+TE AP+L + + + T G P Sbjct: 306 VNGGQALPKGLADAARKRGIEVIVGYGMTETAPILTLANVPQKYMDRSEELSLTTGWPVP 365 Query: 425 DTEIQIRDEEGNVLPP-----GRQGTVFARGGQVMLGYLKAPEETRKVLDEEGWLNTGDL 479 E+ + D E L P G + R V Y K PE+T K GW +TGD+ Sbjct: 366 LVELMVADPE--TLEPVPKDGKTMGEIVVRTPWVTPEYYKDPEKTEKAW-RGGWFHTGDI 422 Query: 480 GMLTWDNELAITGRAKDTIVLRGGENVEPAPLEQALKEHPLVAHAMVVG 528 + T + + I R KD I+ GGE + LE + +HP VA V+G Sbjct: 423 AVWTPEGYIQIVDRDKD-IIKSGGEWISSLRLESLISQHPGVAQVAVIG 470 Score = 43.9 bits (102), Expect = 1e-05 Identities = 63/269 (23%), Positives = 108/269 (40%), Gaps = 26/269 (9%) Query: 22 QYVRQPEGGFTPITYRQLLEDVLTCAAGFAALGIGKGDLVALISENRREWLLVDMGLLFL 81 + V + G T+ + + A ALG+ D VA + N + Sbjct: 32 EIVSRTTKGLERYTFSDAARRIESLANALRALGVSGLDRVATMDWNTHWHYETYFAAPMM 91 Query: 82 GAADVPRGCDVTEKELEHILLTAECSIG-VFENLVQLKKALASERIRHRLKTAVLFDM-- 138 GA P + E+ +I+ AE + V + ++L +A+ ++ V+ D Sbjct: 92 GAVLHPLNVRLAPNEIAYIMNHAEDKVLIVHSDFLKLAEAILPHA--PSVEHVVIVDAES 149 Query: 139 -PPRIEGEREGLTVLSFHQLMERGAQALPGMRDHILAAAEELPASTLATVIFTSGTTGLP 197 P RI G R + ++ L++ EL + A + +TSGTTGLP Sbjct: 150 HPDRIAGRR----LHNYEDLIKEHGGRFEW---------PELDENRPAAMGYTSGTTGLP 196 Query: 198 KGVMLSHGNF-LHQVKGVPILL-----KVGPGDIWLSVLPVWHSFERMMQYVA-LSSASA 250 KGV SH +H + G L +V D L ++P++H + Y+A L+ Sbjct: 197 KGVYHSHRMIVVHALSGALALATRGRRRVTGDDTLLHIVPMFHVLAWGLPYMATLTGMKQ 256 Query: 251 IAYSKPIGRIMLQDMATLKPTWMASVPRI 279 + + +++L + K T A VP I Sbjct: 257 VFPGRLDPKVLLDLIVGEKVTVTAGVPTI 285 >gi|14601327|ref|NP_147862.1| fatty-acid--CoA ligase [Aeropyrum pernix K1] Length = 529 Score = 69.3 bits (168), Expect = 3e-13 Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 16/216 (7%) Query: 327 RWRPRILDRMAGL--IPFLLLWP--FKQLAHLLVFRKLHRKLGGRFVAGISGGGALPPEV 382 RW PR+ R+ I +L P F+QL L L IS G LPPE+ Sbjct: 279 RWNPRLAARLVSSLRINYLAGVPLMFQQLLDLGATSGLR--------LAISAGAPLPPEL 330 Query: 383 DGFFDA-IGITVLEGYGLTEAAPVLAVRSYYHPVPHTVGPVFPDTEIQIRDEEGNVLPPG 441 F GI +L+ YG++E+ + + T+G P E+ + ++G + PP Sbjct: 331 QRRFGRETGIPLLQAYGMSESLILTFQTPKIAEIEGTIGVPLPGVEVSLLGDDGLLSPPP 390 Query: 442 RQGTVFARGGQVMLGYLKAPEETRKVLDEEGWLNTGDLGMLTWDNELAITGRAKDTIVLR 501 G + + VM GY E ++ +D GWL TGD+ +T D + + I+ Sbjct: 391 GVGELVVQAPWVMKGYEFEEENSKAFID--GWLRTGDVIEIT-DRGVMFFRGVRKRIIKY 447 Query: 502 GGENVEPAPLEQALKEHPLVAHAMVVGQDEKYLGAL 537 G + LE L+ HP V A V G+ +G + Sbjct: 448 KGYAILARDLEVILESHPDVLEARVWGEPAGDVGQI 483 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 691,164 Number of Sequences: 1700 Number of extensions: 33146 Number of successful extensions: 112 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 96 Number of HSP's gapped (non-prelim): 6 length of query: 630 length of database: 492,079 effective HSP length: 82 effective length of query: 548 effective length of database: 352,679 effective search space: 193268092 effective search space used: 193268092 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719094|ref|YP_003874626.1| hypothetical protein STHERM_c14130 [Spirochaeta thermophila DSM 6192] (353 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 333,650 Number of Sequences: 1700 Number of extensions: 13671 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 0 length of query: 353 length of database: 492,079 effective HSP length: 78 effective length of query: 275 effective length of database: 359,479 effective search space: 98856725 effective search space used: 98856725 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719095|ref|YP_003874627.1| hypothetical protein STHERM_c14140 [Spirochaeta thermophila DSM 6192] (676 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.143 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 637,475 Number of Sequences: 1700 Number of extensions: 26702 Number of successful extensions: 107 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107 Number of HSP's gapped (non-prelim): 0 length of query: 676 length of database: 492,079 effective HSP length: 83 effective length of query: 593 effective length of database: 350,979 effective search space: 208130547 effective search space used: 208130547 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719096|ref|YP_003874628.1| hypothetical protein STHERM_c14150 [Spirochaeta thermophila DSM 6192] (145 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 145,748 Number of Sequences: 1700 Number of extensions: 5745 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 145 length of database: 492,079 effective HSP length: 69 effective length of query: 76 effective length of database: 374,779 effective search space: 28483204 effective search space used: 28483204 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719097|ref|YP_003874629.1| ATP-dependent RNA helicase RhlB [Spirochaeta thermophila DSM 6192] (439 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 409,789 Number of Sequences: 1700 Number of extensions: 16504 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 439 length of database: 492,079 effective HSP length: 80 effective length of query: 359 effective length of database: 356,079 effective search space: 127832361 effective search space used: 127832361 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719098|ref|YP_003874630.1| two-component system sensor histidine kinase [Spirochaeta thermophila DSM 6192] (776 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 689,669 Number of Sequences: 1700 Number of extensions: 28204 Number of successful extensions: 101 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101 Number of HSP's gapped (non-prelim): 0 length of query: 776 length of database: 492,079 effective HSP length: 84 effective length of query: 692 effective length of database: 349,279 effective search space: 241701068 effective search space used: 241701068 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719099|ref|YP_003874631.1| response regulator [Spirochaeta thermophila DSM 6192] (422 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 390,916 Number of Sequences: 1700 Number of extensions: 16823 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 422 length of database: 492,079 effective HSP length: 79 effective length of query: 343 effective length of database: 357,779 effective search space: 122718197 effective search space used: 122718197 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719100|ref|YP_003874632.1| hypothetical protein STHERM_c14190 [Spirochaeta thermophila DSM 6192] (216 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.133 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 147,125 Number of Sequences: 1700 Number of extensions: 5007 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 216 length of database: 492,079 effective HSP length: 73 effective length of query: 143 effective length of database: 367,979 effective search space: 52620997 effective search space used: 52620997 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719101|ref|YP_003874633.1| transporter [Spirochaeta thermophila DSM 6192] (900 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431903|ref|NP_148652.2| hypothetical protein APE_2500.1 [A... 49 4e-07 >gi|118431903|ref|NP_148652.2| hypothetical protein APE_2500.1 [Aeropyrum pernix K1] Length = 1180 Score = 49.3 bits (116), Expect = 4e-07 Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 20/185 (10%) Query: 710 IRTSGQAKVEYALTDLIVKSQTISIAVSLGLVFLILVVTFRSIAAGIYGLIPLGITVLIN 769 + +G+ + L + +V+ S A S +V IL +I I I +G + Sbjct: 646 VMLAGEEALRKELQEAVVEDLRRSDAASSIIVVAILAAVIGTILGVIIPFIGIGAGLTAA 705 Query: 770 FGVMGLAGIR--LDIPT---SMVASLAIGIGIDYAIHFMNYYHRERISTGDREKATRNSM 824 ++ +D+ + ++V + +G+GIDY+ + + D + +R + Sbjct: 706 LAILYFLASNDLVDVTSQSRAIVFTTGLGLGIDYSAYVTKKFR-------DNIRGSRGAW 758 Query: 825 KGVGKA-------ILFNAVSVAAGFLVLLLS-QFVPIAYMGLLIALTMATSSAASITLLP 876 + GKA +L A + AAGF L+L+ +F + +G + + + + + AS+TL P Sbjct: 759 EAAGKAASNSVRPVLAGAFAAAAGFSSLMLAFEFPFVKSIGATVPIAILSVAVASLTLTP 818 Query: 877 AIFAI 881 AI A+ Sbjct: 819 AILAL 823 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 758,291 Number of Sequences: 1700 Number of extensions: 31106 Number of successful extensions: 126 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 124 Number of HSP's gapped (non-prelim): 3 length of query: 900 length of database: 492,079 effective HSP length: 85 effective length of query: 815 effective length of database: 347,579 effective search space: 283276885 effective search space used: 283276885 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719102|ref|YP_003874634.1| hypothetical protein STHERM_c14210 [Spirochaeta thermophila DSM 6192] (256 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 236,631 Number of Sequences: 1700 Number of extensions: 9803 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 256 length of database: 492,079 effective HSP length: 75 effective length of query: 181 effective length of database: 364,579 effective search space: 65988799 effective search space used: 65988799 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719103|ref|YP_003874635.1| hypothetical protein STHERM_c14220 [Spirochaeta thermophila DSM 6192] (477 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 456,617 Number of Sequences: 1700 Number of extensions: 20263 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 0 length of query: 477 length of database: 492,079 effective HSP length: 80 effective length of query: 397 effective length of database: 356,079 effective search space: 141363363 effective search space used: 141363363 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719104|ref|YP_003874636.1| hypothetical protein STHERM_c14230 [Spirochaeta thermophila DSM 6192] (613 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430994|ref|NP_147143.2| phospho-sugar mutase [Aeropyrum pe... 55 4e-09 >gi|118430994|ref|NP_147143.2| phospho-sugar mutase [Aeropyrum pernix K1] Length = 464 Score = 55.5 bits (132), Expect = 4e-09 Identities = 68/238 (28%), Positives = 91/238 (38%), Gaps = 34/238 (14%) Query: 68 LLARDSRPTGEAICRAIAAGLCMEGVGVRYAGIAAAPEVMAFSAADPEPAGFVYVSASHN 127 L+ RD+R GE +AAGL EGV V AG P + + AG V V+ASHN Sbjct: 43 LVGRDTRSGGELFEGLVAAGLAFEGVEVHLAGTLPTPALQLYVRDHGYDAG-VMVTASHN 101 Query: 128 PVGHNGIKVGSRGGVLGAREAGELIRRFREEVRXXXXXXXXXXXXXXXPPGVWEEEARWK 187 P +NGIKV GV R+ E I E + W A Sbjct: 102 PPEYNGIKVVGGDGVEVPRDVEEGIEALFWEGKFSTVE--------------WRSVAGQP 147 Query: 188 EGALRAYGGFVRRVITGGEAEEVVRRWAELGEGVRRRGAVIVGELNGSARGASVDRDVLE 247 + A +V RV+ E V + + G G R +V + G A + ++L+ Sbjct: 148 KRVHDAVDYYVNRVV------ENVSAFTQRGGGER-----VVVDCGGGATSFTT-VEILK 195 Query: 248 DLGCEVRLFNAAPGGFVHEILPE--GESLEMCADLVRGVVEERGCEALGYVPDCDGDR 303 LG + P PE ++L A LVR G D DGDR Sbjct: 196 RLGARPIPLSCKPDPLFSSRDPEPTPDTLGPAASLVRS-----SGAVFGVGHDADGDR 248 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 651,243 Number of Sequences: 1700 Number of extensions: 30727 Number of successful extensions: 122 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 120 Number of HSP's gapped (non-prelim): 2 length of query: 613 length of database: 492,079 effective HSP length: 82 effective length of query: 531 effective length of database: 352,679 effective search space: 187272549 effective search space used: 187272549 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719105|ref|YP_003874637.1| hypothetical protein STHERM_c14240 [Spirochaeta thermophila DSM 6192] (160 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.140 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 112,166 Number of Sequences: 1700 Number of extensions: 2893 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 160 length of database: 492,079 effective HSP length: 70 effective length of query: 90 effective length of database: 373,079 effective search space: 33577110 effective search space used: 33577110 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719106|ref|YP_003874638.1| A/G-specific adenine glycosylase [Spirochaeta thermophila DSM 6192] (272 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431238|ref|NP_147565.2| U/G and T/G mismatch-specific DNA ... 91 4e-20 >gi|118431238|ref|NP_147565.2| U/G and T/G mismatch-specific DNA glycosylase [Aeropyrum pernix K1] Length = 223 Score = 90.5 bits (223), Expect = 4e-20 Identities = 64/201 (31%), Positives = 105/201 (52%), Gaps = 17/201 (8%) Query: 8 VRGFQEEVLGFHRREG-RDFPWRRTRDPYAIFVSEMMLQQTQTSRVVGKYGEFLARFPSW 66 + + ++ ++R G +D PWR T DP+AI V+ +L++T +VV Y EFL R+P+ Sbjct: 9 IEALRRRLIEWYRVYGDKDLPWRNTADPWAILVAAFLLRKTTARQVVRVYEEFLRRYPNP 68 Query: 67 EVLAGARLGEVLEVWQGLGY-NRRARGVWESARIVVERWGGRLPDEPGVLEGLPMVGPYT 125 + LA AR EV E+ + LG ++RA+ + E A+ + R+GGR+P L+ LP VG Y Sbjct: 69 KALASAREDEVRELIRPLGIEHQRAKHLIELAKHIEARYGGRIPCSKEKLKELPGVGDYI 128 Query: 126 ARAVATFAYGRPCVFVETNIRTVFLDRFFPGREGVRDAEILPLVEETLYR---------- 175 A V A G P ++ N+ + L+R GV+ A+ P + ++ Sbjct: 129 ASEVLLAACGSPEPLLDRNMIRI-LERVL----GVKSAKKRPHTDPKMWSTARRIVPKDP 183 Query: 176 DDVRTWYYALMDLGAAIKARR 196 D + + Y ++DL I R Sbjct: 184 DMAKEFNYGMLDLARKICTAR 204 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.143 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 285,142 Number of Sequences: 1700 Number of extensions: 13817 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 1 length of query: 272 length of database: 492,079 effective HSP length: 75 effective length of query: 197 effective length of database: 364,579 effective search space: 71822063 effective search space used: 71822063 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719107|ref|YP_003874639.1| GS1-like protein [Spirochaeta thermophila DSM 6192] (237 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 292,888 Number of Sequences: 1700 Number of extensions: 14918 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 237 length of database: 492,079 effective HSP length: 74 effective length of query: 163 effective length of database: 366,279 effective search space: 59703477 effective search space used: 59703477 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719108|ref|YP_003874640.1| tryptophanyl-tRNA synthetase [Spirochaeta thermophila DSM 6192] (355 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431880|ref|NP_148625.2| tryptophanyl-tRNA synthetase [Aero... 79 2e-16 gi|118431719|ref|NP_148365.2| tyrosyl-tRNA synthetase [Aeropyrum... 41 5e-05 >gi|118431880|ref|NP_148625.2| tryptophanyl-tRNA synthetase [Aeropyrum pernix K1] Length = 372 Score = 78.6 bits (192), Expect = 2e-16 Identities = 87/307 (28%), Positives = 133/307 (43%), Gaps = 33/307 (10%) Query: 2 ERKRILTGDRPTGKLHLGHYVGSLANRVKLQDE-YECFFIIADLHMLTTKPEKKDVEAIA 60 ER +LTG P+GK H GH + ++ + LQ ++ F IAD + ++ EA+ Sbjct: 69 ERVAVLTGFMPSGKFHFGHKL-TVDQLIYLQKNGFKVFVAIADAEAFAVRRIGRE-EAVR 126 Query: 61 DNAREMVLDYLACGIDPAKSVIYLQSAVPEVY-ELNLFFEMLVTVPRLQRIPTLKEMAQA 119 E + + +A G+DP + Y Q+ Y L F VT ++ I Sbjct: 127 IAVEEYIANMIALGLDPKDTEFYFQTNRGTPYFRLIQLFSGKVTAAEMEAI--------- 177 Query: 120 AHLEEMPLGLLGYPVLQAADILLP--------RAHVVPVGKDNVPHVELTREIARRFNFL 171 + E P ++ + QAADIL R VVPVG D PH+ LTR++A R Sbjct: 178 -YGELTPAKMMA-SLTQAADILHVQLDEYGGYRHVVVPVGADQDPHLRLTRDLADRM--- 232 Query: 172 YGEVFPVPDPLVGEVPTLVGIDGAAKMSKSLGNAILLSDDPKTVEKKVFKMYTDPNRVRA 231 V + P G+DG S + I L+D P+ K+F+ T R A Sbjct: 233 -AGVVELERPASTYHKLQPGLDGRKMSSSRPDSTIFLTDPPEVARNKLFRALTG-GRATA 290 Query: 232 DIPGRVEGNP--VFIYH-DIFN--SNKEEVEDLKRRYREGKVGDVEVKEKLARALNAFLD 286 + R+ G P +YH D+++ + EV+ + R GK+ E K+ L FL Sbjct: 291 EEQRRLGGVPEVCSVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLA 350 Query: 287 PIRERRE 293 + R E Sbjct: 351 EHQSRLE 357 >gi|118431719|ref|NP_148365.2| tyrosyl-tRNA synthetase [Aeropyrum pernix K1] Length = 361 Score = 40.8 bits (94), Expect = 5e-05 Identities = 63/321 (19%), Positives = 119/321 (37%), Gaps = 59/321 (18%) Query: 9 GDRPTGKLHLGHYVGSLANRVKLQDEYECFFIIADLHMLTTKPEKKDVEAIADNAREMVL 68 G P+G H+G V + ++ + + A H D++ I AR + Sbjct: 38 GYEPSGVAHIGWLVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRR 97 Query: 69 DYLACGIDPAKSVIYLQS----AVPEVYELNLFFEMLVTVPRLQRIPTLKEMAQAAHLEE 124 A G+ P + V ++ + + + + L + ++ R++R T+ M + A E Sbjct: 98 VMEAAGV-PVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTI--MGRRAEEAE 154 Query: 125 MPLGLLGYPVLQAADILLPRAHVVPVGKDNVPHVELTREIARRFNFLYGEVFPVPDPLVG 184 + L YP++Q +DI + G D L R++A + P+ Sbjct: 155 VDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGR--------KKPVAI 206 Query: 185 EVPTLVGIDGAAKMSKSLGN-----------------AILLSDDPKTVEKKVFKMYTDPN 227 P + + G +M S G A+ + D + +K+ K Y Sbjct: 207 HTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVDSDDDIRRKIRKAYCPAK 266 Query: 228 RVRADIPGRVEGNPVF-------IYHDIFNSNKEE------------VEDLKRRYREGKV 268 +V +GNPV D F + E+L+R Y +G++ Sbjct: 267 QV--------QGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYTDGRL 318 Query: 269 GDVEVKEKLARALNAFLDPIR 289 +++K +A +L + PIR Sbjct: 319 HPLDLKNAVAESLIEVVRPIR 339 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 376,646 Number of Sequences: 1700 Number of extensions: 17451 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 2 length of query: 355 length of database: 492,079 effective HSP length: 78 effective length of query: 277 effective length of database: 359,479 effective search space: 99575683 effective search space used: 99575683 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719109|ref|YP_003874641.1| hypothetical protein STHERM_c14280 [Spirochaeta thermophila DSM 6192] (245 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.136 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 264,762 Number of Sequences: 1700 Number of extensions: 11503 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 245 length of database: 492,079 effective HSP length: 74 effective length of query: 171 effective length of database: 366,279 effective search space: 62633709 effective search space used: 62633709 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719110|ref|YP_003874642.1| hypothetical protein STHERM_c14290 [Spirochaeta thermophila DSM 6192] (377 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431922|ref|NP_148690.2| anthranilate synthase component I ... 131 2e-32 >gi|118431922|ref|NP_148690.2| anthranilate synthase component I [Aeropyrum pernix K1] Length = 438 Score = 131 bits (330), Expect = 2e-32 Identities = 83/251 (33%), Positives = 118/251 (47%), Gaps = 4/251 (1%) Query: 119 EALEAGITYQVNYTFRLEGRXXXXXXXXXXXXVNRSAPSYSAYVEAGDHAVLSFSPELFF 178 E + AG +QV + R + + Y Y G ++ SPEL Sbjct: 182 ERIRAGEAFQVVLSRVERYRVWGSLFSAYERLADANPSPYLYYARLGGRVIIGSSPELLV 241 Query: 179 RKHRDLVECEPMKGTSRRGTNPDEDAHLVHRLHTSEKNRAENLMIVDMIRNDLGKIAAIG 238 + VE P+ GT RG+ P ED L L EK RAE++M+VD+ RND+ +++ G Sbjct: 242 KLEAGRVETHPIAGTRPRGSTPIEDIELEVELLNDEKERAEHVMLVDLARNDITRVSIPG 301 Query: 239 TVEVPHLFSIRTIPYAHQMVSTVR--ARTSASIPRILEALFPCASITGAPKASTMSIIAR 296 TV+V I +VS V R S + L+AL P +++GAPK M IIA Sbjct: 302 TVQVTSFMDIERYETVMHIVSRVEGVTRPSTTFVEALKALHPAGTVSGAPKPRAMEIIAE 361 Query: 297 EEHSPRGVYTGTVGFWSRETALFNVAIRT--LVKDGPRWYYGTGGGIVWDSDPGEEYLEA 354 E RG Y G +G + +R+ L+ DG G GIV+DS P EY+E Sbjct: 362 LEEEARGPYAGAIGVAGSSAGEAAIVLRSAWLLDDGETLEARAGAGIVYDSKPEREYMET 421 Query: 355 LLKVGALGRPL 365 + K+G+L R L Sbjct: 422 VQKLGSLKRAL 432 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 367,170 Number of Sequences: 1700 Number of extensions: 15348 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 1 length of query: 377 length of database: 492,079 effective HSP length: 78 effective length of query: 299 effective length of database: 359,479 effective search space: 107484221 effective search space used: 107484221 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719111|ref|YP_003874643.1| hypothetical protein STHERM_c14300 [Spirochaeta thermophila DSM 6192] (231 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 253,476 Number of Sequences: 1700 Number of extensions: 10820 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 231 length of database: 492,079 effective HSP length: 74 effective length of query: 157 effective length of database: 366,279 effective search space: 57505803 effective search space used: 57505803 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719112|ref|YP_003874644.1| hypothetical protein STHERM_c14310 [Spirochaeta thermophila DSM 6192] (348 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.333 0.146 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 257,607 Number of Sequences: 1700 Number of extensions: 8800 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 348 length of database: 492,079 effective HSP length: 78 effective length of query: 270 effective length of database: 359,479 effective search space: 97059330 effective search space used: 97059330 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719113|ref|YP_003874645.1| hypothetical protein STHERM_c14320 [Spirochaeta thermophila DSM 6192] (271 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 246,277 Number of Sequences: 1700 Number of extensions: 11328 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 271 length of database: 492,079 effective HSP length: 75 effective length of query: 196 effective length of database: 364,579 effective search space: 71457484 effective search space used: 71457484 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719114|ref|YP_003874646.1| superoxide dismutase Mn type [Spirochaeta thermophila DSM 6192] (206 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600936|ref|NP_147461.1| superoxide dismutase [Aeropyrum per... 144 1e-36 >gi|14600936|ref|NP_147461.1| superoxide dismutase [Aeropyrum pernix K1] Length = 214 Score = 144 bits (364), Expect = 1e-36 Identities = 81/211 (38%), Positives = 106/211 (50%), Gaps = 24/211 (11%) Query: 3 FTLPSLPYPYDALEPHIDARTMEIHHTKHHAGYVNNLNAALEKAPFAKDKDLVFLLRNLK 62 + LP LPY Y+ALEP+I M++HH KHH YV NAALEK K Sbjct: 7 YELPPLPYNYNALEPYIIEEIMKLHHQKHHNTYVKGANAALEKIE--------------K 52 Query: 63 SLPEEVQTAVRN-------NGGGHANHSLFWTVLSP--EGGGTPQGAVGKAIVSTFGSFD 113 L E+Q VR N GH H++FW ++P +GGGTP G V I FG F+ Sbjct: 53 HLKGEIQIDVRAVMRDFSFNYAGHIMHTIFWPNMAPPGKGGGTPGGRVADLIEKQFGGFE 112 Query: 114 XXXXXXXXXXXXRFGSGWAWLVVNAYGT-LQVYSTPNQDSPYLDGFIPILGLDVWEHAYY 172 G GW L + L++ + G +PIL +DVWEHAYY Sbjct: 113 KFKALFSAAAKTVEGVGWGVLAFDPLTEELRILQVEKHNVLMTAGLVPILVIDVWEHAYY 172 Query: 173 LSYQNRRPDYIAAFWNVVNWEEVERRYNETL 203 L Y+N R Y+ +WNVVNW++VE+R + L Sbjct: 173 LQYKNDRGSYVENWWNVVNWDDVEKRLEQAL 203 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 222,531 Number of Sequences: 1700 Number of extensions: 9363 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 1 length of query: 206 length of database: 492,079 effective HSP length: 73 effective length of query: 133 effective length of database: 367,979 effective search space: 48941207 effective search space used: 48941207 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719115|ref|YP_003874647.1| redox-sensing transcriptional repressor rex [Spirochaeta thermophila DSM 6192] (211 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 207,801 Number of Sequences: 1700 Number of extensions: 8780 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 211 length of database: 492,079 effective HSP length: 73 effective length of query: 138 effective length of database: 367,979 effective search space: 50781102 effective search space used: 50781102 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719116|ref|YP_003874648.1| transporter [Spirochaeta thermophila DSM 6192] (213 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 100 5e-23 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 93 5e-21 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 91 2e-20 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 83 6e-18 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 80 4e-17 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 75 2e-15 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 74 4e-15 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 67 3e-13 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 65 1e-12 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 64 2e-12 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 64 4e-12 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 64 4e-12 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 62 1e-11 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 62 1e-11 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 61 2e-11 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 60 6e-11 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 59 7e-11 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 59 9e-11 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 58 2e-10 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 58 2e-10 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 58 2e-10 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 57 5e-10 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 56 6e-10 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 56 6e-10 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 56 8e-10 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 54 2e-09 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 54 3e-09 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 49 1e-07 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 49 1e-07 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 48 2e-07 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 47 3e-07 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 47 3e-07 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 47 4e-07 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 46 8e-07 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 44 3e-06 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 40 5e-05 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 40 5e-05 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 40 6e-05 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 99.8 bits (247), Expect = 5e-23 Identities = 68/176 (38%), Positives = 92/176 (52%), Gaps = 16/176 (9%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRC-------TGLPAG--PVSMVFQEPRLLPWATVRE 51 +GPS CGKTT+L+V+AGLL P+ GR TGLP V VFQ+ L P TV + Sbjct: 37 LGPSGCGKTTMLKVIAGLLKPRRGRVFFGGVDYTGLPPERRSVGFVFQDLALFPHMTVYD 96 Query: 52 NIALVLPPHEGEG----TMVEHLMEELGLAP---YAGAYPHQLSGGLKQRVGLARALAFP 104 N+A L G VE +E +GL P + G LSGG +QRV LARA+A+ Sbjct: 97 NVAFGLRARGFSGGEVRRQVEWALETVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYE 156 Query: 105 SPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLIL 160 P+LL+DEP RL ++ T + V+H E + LAD ++I+ Sbjct: 157 PPVLLLDEPLSHLDFKIRQRLLAELKRLQRKLGSTMIYVTHDQWEAMELADTLVIM 212 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 93.2 bits (230), Expect = 5e-21 Identities = 63/173 (36%), Positives = 85/173 (49%), Gaps = 13/173 (7%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRC-------TGLPAGP--VSMVFQEPRLLPWATVRE 51 +GPS CGKTT LR++AGL P AGR TGLP V+MVFQ L P V + Sbjct: 35 LGPSGCGKTTTLRIVAGLERPDAGRVYFDGRDVTGLPPKDRNVAMVFQSYALWPHMRVFD 94 Query: 52 NIALVLP----PHEGEGTMVEHLMEELGLAPYAGAYPHQLSGGLKQRVGLARALAFPSPL 107 NIA L P + V E L + YPHQLSGG +QRV +ARA+ + Sbjct: 95 NIAFPLKIKKLPRDEIVRRVRWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEV 154 Query: 108 LLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLIL 160 LLMDEP +L + T + V+H E +++ D ++++ Sbjct: 155 LLMDEPLSNLDAILRIKMRSEIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVM 207 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 90.9 bits (224), Expect = 2e-20 Identities = 65/173 (37%), Positives = 84/173 (48%), Gaps = 13/173 (7%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRC-------TGLPAGP--VSMVFQEPRLLPWATVRE 51 +GPS GKTTLL ++AG+ P GR T LP + +VFQ L P TV E Sbjct: 35 LGPSGSGKTTLLYLIAGIYKPSRGRIYFNDVDVTDLPPNKRNIGLVFQNYALYPHMTVYE 94 Query: 52 NIALVLPPHE-GEGTMVEHLMEE---LGLAPYAGAYPHQLSGGLKQRVGLARALAFPSPL 107 NIA L GE + E ++ LG+ YP QLSGG +QRV LARAL + Sbjct: 95 NIAFPLRLRNFGEPAIKEKVLSVAKLLGIEGLLDRYPAQLSGGQQQRVALARALVKEPEV 154 Query: 108 LLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLIL 160 LL+DEP +L KE T + V+H E L +AD + I+ Sbjct: 155 LLLDEPLSNLDALLRIKIRSELKKLQKELGITAIYVTHDQSEALAMADRIAII 207 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 82.8 bits (203), Expect = 6e-18 Identities = 64/173 (36%), Positives = 78/173 (45%), Gaps = 13/173 (7%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRC-------TGLPAGP--VSMVFQEPRLLPWATVRE 51 +GPS CGKTT LRV+AG P GR T L +MVFQ L P V + Sbjct: 35 LGPSGCGKTTTLRVIAGFETPDEGRVYIGSRDVTMLKPYERNTAMVFQNYALWPHMRVFD 94 Query: 52 NIALVLP----PHEGEGTMVEHLMEELGLAPYAGAYPHQLSGGLKQRVGLARALAFPSPL 107 NIA L P V E L + YPHQLSGG +QRV +ARA+ + Sbjct: 95 NIAYGLKLRKLPRSEIVRRVRWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEV 154 Query: 108 LLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLIL 160 LLMDEP RL K T V V+H EE L ++ V ++ Sbjct: 155 LLMDEPLSNLDAHLRLKMREEIVRLQKRLGVTIVYVTHDQEEALSISHRVAVM 207 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 80.1 bits (196), Expect = 4e-17 Identities = 64/189 (33%), Positives = 87/189 (46%), Gaps = 23/189 (12%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRCTGLPAGP-----------VSMVFQEPRLLPWATV 49 +GPS CGKTT LR++AGL P GR L G V+MVFQ L P +V Sbjct: 35 LGPSGCGKTTTLRLIAGLEYPDEGRI--LIDGEDVTFKDPKDRNVAMVFQNYALYPHMSV 92 Query: 50 RENIALVLPPHEGEGTMVE--------HLMEELGLAPYAGAYPHQLSGGLKQRVGLARAL 101 +NIA L E + + + + L + P QLSGG +QRV LARAL Sbjct: 93 FDNIAFTLHLRRKEMGLTKDDIRRRVIEVAKLLRIEDLLDRKPGQLSGGQQQRVALARAL 152 Query: 102 AFPSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLILG 161 + LMDEP +L K+ TTV V+H E + +AD + ++ Sbjct: 153 VRRPKVWLMDEPLSNLDALLRLAMRAELKKLQKDLKITTVYVTHDQAEAMSMADRIAVM- 211 Query: 162 GNPTRVLAI 170 N RV+ + Sbjct: 212 -NKGRVVQV 219 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 74.7 bits (182), Expect = 2e-15 Identities = 60/188 (31%), Positives = 85/188 (45%), Gaps = 30/188 (15%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAG-RCTG---------LPAGPVS------MVFQEPRLL 44 MGPS GK+TL+RV+ L+ G R G + P + MVFQEP Sbjct: 37 MGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVMKEDPYNIRRYTGMVFQEPNPF 96 Query: 45 PWATVRENIALVLPPHEGEGTMVE------------HLMEELGLAPYAGAYPHQLSGGLK 92 P T+ EN+A+ H E HL +E+ YPHQLSGG + Sbjct: 97 PHMTIYENVAIGPKLHGLAKNKKELDEIVEWALKMAHLWDEV--KDRLSDYPHQLSGGQR 154 Query: 93 QRVGLARALAFPSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLL 152 QR+ LARALA +LL+DEP + KE+ T ++V+H ++ Sbjct: 155 QRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKEEMATVIIVTHTPQQAAR 214 Query: 153 LADHVLIL 160 ++D +L L Sbjct: 215 ISDQILFL 222 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 73.6 bits (179), Expect = 4e-15 Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 21/178 (11%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRCT--GLPAGP-------------VSMVFQEPRLLP 45 MGPS GKTTLL ++AG+ P AGR G V VFQ+ L+P Sbjct: 46 MGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIP 105 Query: 46 WATVRENIALVLP-PHEGEGTMVEHLMEELGLAPYAGAYPHQLSGGLKQRVGLARALAFP 104 T ENI L + + + L+ +GL YP +LSGG +QR+ +A ALA Sbjct: 106 TLTALENILLPMALAGKANRLRGQELLRRVGLGGKERRYPEELSGGEQQRLAVAVALAND 165 Query: 105 SPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLL--LADHVLIL 160 P+++ DEP R+ + +T VL +H +P + +AD V ++ Sbjct: 166 PPIIVADEPTGELDIATGERIVRILLEEAHSRGKTVVLTTH---DPRVARMADRVAVI 220 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 67.4 bits (163), Expect = 3e-13 Identities = 62/190 (32%), Positives = 83/190 (43%), Gaps = 30/190 (15%) Query: 2 GPSACGKTTLLRVLAGLLAPQAGRCTG---------------------LPAGPVSMVFQE 40 G S GK+TL + GL+ P GR G + VSMVFQ Sbjct: 42 GESGSGKSTLAWSILGLVPPP-GRIVGGRIMIDGMDVTSMSEAELRRKVRWKKVSMVFQG 100 Query: 41 PR--LLPWATVRENIALVLPPHEGEGT-----MVEHLMEELGL-APYAGAYPHQLSGGLK 92 L P TV I VL H G G V L+E +GL A YPH+LSGG K Sbjct: 101 AMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELLESVGLHRSIADRYPHELSGGQK 160 Query: 93 QRVGLARALAFPSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLL 152 QRV +A ALA +++ DEP + +L E+ + +L++H L Sbjct: 161 QRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLKKLAWEKNLSIILITHDLSVIAE 220 Query: 153 LADHVLILGG 162 LA+ V+I+ G Sbjct: 221 LAETVMIMYG 230 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 65.1 bits (157), Expect = 1e-12 Identities = 65/224 (29%), Positives = 93/224 (41%), Gaps = 35/224 (15%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRC-------TGLPAGPVSMVF-------QEPRLLPW 46 MGPS GK+TLL+ + L+ P +G T L + MV Q L P Sbjct: 36 MGPSGSGKSTLLKAIPRLVEPDSGSIVFRGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPH 95 Query: 47 ATVRENI------ALVLPPHEGEGTMVEHLMEELGLAPYAGAYPHQLSGGLKQRVGLARA 100 TV NI AL L + E V++L LG+ A +P +LSGG +QR LARA Sbjct: 96 MTVLRNITYPLEKALGLSRRDAEERAVKYL-SMLGIEDLAHRHPARLSGGQQQRAALARA 154 Query: 101 LAFPSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLIL 160 LA +LL+DEP R+ + ++V+H + + +AD + + Sbjct: 155 LAMEPDILLLDEPTSALDPESRADVLEALFRV-ATLGKAMIVVTHEADFAVKVADRMAFM 213 Query: 161 GGNPTRVLAILDHPAPHGVEEMTDPRLLPLERGIRRALASIEES 204 + EE L+ +RR L SI ES Sbjct: 214 EDGIVK-------------EEGKPSELVEGSERVRRFLESILES 244 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 64.3 bits (155), Expect = 2e-12 Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 9/136 (6%) Query: 34 VSMVFQEP--RLLPWATVRENIALVLPPH------EGEGTMVEHLMEELGLAP-YAGAYP 84 V MV Q+P L P V E I + H EG V ++E +GL +A YP Sbjct: 128 VQMVQQDPYSSLNPRMKVGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYP 187 Query: 85 HQLSGGLKQRVGLARALAFPSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVS 144 ++LSGG +QRV +ARALA +L++DEP R+ LWK+ T +L++ Sbjct: 188 YELSGGQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLIT 247 Query: 145 HRLEEPLLLADHVLIL 160 H + ++ V+++ Sbjct: 248 HDISVVRYMSSSVVVM 263 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 63.5 bits (153), Expect = 4e-12 Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 18/176 (10%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAG--RCTGLPA--------GPVSMVFQEPRLLPWATVR 50 +GP+ GKTTL+++L+ LL P +G R G + +V R L W Sbjct: 45 LGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANNVRSRIGVVLGGERALYWRLSG 104 Query: 51 -ENIALV-----LPPHEGEGTMVEHLMEELGLAPYAGAYPHQLSGGLKQRVGLARALAFP 104 +N+ +PP E + V+ L+E +GL +A S G+KQR+ +AR L Sbjct: 105 WDNLWFFSQLYGIPPREAK-RRVKELLEIVGLEEWAHVRVENYSKGMKQRLHIARGLIND 163 Query: 105 SPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLIL 160 +LL+DEP + R+ +E RT +L +H + E L+D V I+ Sbjct: 164 PEVLLLDEPTIGLDPKAAREVRSIIRRIVRE-GRTVLLTTHYMVEAEELSDRVAII 218 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 63.5 bits (153), Expect = 4e-12 Identities = 59/206 (28%), Positives = 85/206 (41%), Gaps = 33/206 (16%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRC--TGLPAGP------------VSMVFQEP--RLL 44 +G S CGKTTL + + G+ P G G P + MVFQ+P L Sbjct: 54 VGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARDRRLRRKLQMVFQDPYKSLD 113 Query: 45 PWATVRENIALVLPPH------EGEGTMVEHLMEELGLAPYAGAY---PHQLSGGLKQRV 95 P V + +A L H E VE ++E +GL P Y PHQLSGG +QRV Sbjct: 114 PLMPVGDQVAEPLVIHGLARGEEARRRAVE-MLETVGLTPGREFYWRKPHQLSGGQRQRV 172 Query: 96 GLARALAFPSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLAD 155 +AR L +++ DEP + + T VL++H + +AD Sbjct: 173 AIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTGATIVLITHDIAVARAVAD 232 Query: 156 HVLIL-------GGNPTRVLAILDHP 174 + ++ G P V+ HP Sbjct: 233 RIAVMYLGKIVEVGEPRSVIENPRHP 258 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 61.6 bits (148), Expect = 1e-11 Identities = 57/190 (30%), Positives = 85/190 (44%), Gaps = 32/190 (16%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRCTG---LPAG-----------------PVSMVFQE 40 +G S GK+TL + L+ P GR G L +G + MVFQ+ Sbjct: 39 VGESGSGKSTLALSIPRLIMPP-GRIVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQD 97 Query: 41 PR--LLPWATVRENIALVLPPH-------EGEGTMVEHLMEELGLA-PYAGAYPHQLSGG 90 P L P+ TV IA L H E E +M +E +G+ A YPHQLSGG Sbjct: 98 PTAYLDPYRTVGSQIAESLLEHGLASSGSEAE-SMAGDALELVGIPRDRASVYPHQLSGG 156 Query: 91 LKQRVGLARALAFPSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEP 150 +QRV +A A+A +L+ DEP + +L +E+ T +LV+H + Sbjct: 157 QRQRVAIAAAVALEPKILIADEPTTALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLA 216 Query: 151 LLLADHVLIL 160 +D + ++ Sbjct: 217 AEYSDRIAVM 226 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 61.6 bits (148), Expect = 1e-11 Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 36/193 (18%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRCTG-----LPAGP-------------------VSM 36 +G S CGK+TL R +A +L A G L +G VSM Sbjct: 41 VGESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSM 100 Query: 37 VFQEPR--LLPWATVRENIALVLPPHEGEGTMVEHLMEELGL-----APYA--GAYPHQL 87 +FQ+P L P V++ + + GE VE + +E+ AP+ YPH+L Sbjct: 101 IFQDPSAALSPVHKVKKQVTDHV---SGEKRRVEKIAQEILKKLMMPAPHMILEKYPHEL 157 Query: 88 SGGLKQRVGLARALAFPSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRL 147 SGG+KQR+ +A +L +++ DEP ++ RL +E T +L++H L Sbjct: 158 SGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKMLSRLREELETTIILITHNL 217 Query: 148 EEPLLLADHVLIL 160 +AD + ++ Sbjct: 218 AVAAEIADRIAVM 230 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 61.2 bits (147), Expect = 2e-11 Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 21/199 (10%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRCTGLP-----AGP-------VSMVFQEPRLLPWAT 48 +G + GKTTL+R+L G + P G GP ++MV+Q+ RL+ T Sbjct: 45 LGENGAGKTTLMRILYGEIKPTMGEIYVWGRKVSWRGPWDAIRNGIAMVYQQFRLVESMT 104 Query: 49 VRENIALVLPP-----HEGEGTMVEHLMEELGLAPYAGAYPHQLSGGLKQRVGLARALAF 103 V ENIA+ L E +E E LGL L G +QRV + +AL+ Sbjct: 105 VEENIAIYLSSLGLGRSEARRRTLE-TAERLGLEIDLAKTVADLPMGARQRVEIIKALSG 163 Query: 104 PSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLILGGN 163 + +L++DEP RL K+ + V ++H+L E + +AD V +L Sbjct: 164 GAKVLILDEPTSNLTPLEAEKLFSTL-RLLKDMGVSVVYITHKLGEVVRVADRVTVL--R 220 Query: 164 PTRVLAILDHPAPHGVEEM 182 RV A+++ EE+ Sbjct: 221 RGRVSAVIEDVGRTSEEEL 239 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 59.7 bits (143), Expect = 6e-11 Identities = 45/120 (37%), Positives = 57/120 (47%), Gaps = 7/120 (5%) Query: 2 GPSACGKTTLLRVLAGLLAPQAGRCT-GLPAGP---VSMVFQEPRLLPWATVRENIALVL 57 G + GKTTLLR+ AGL P GR + G P GP V V P + TV EN+ Sbjct: 37 GANGSGKTTLLRLSAGLAEPSRGRVSWGCPRGPRGCVGYVGHTPMVYGDLTVWENVEFFS 96 Query: 58 PPHEG---EGTMVEHLMEELGLAPYAGAYPHQLSGGLKQRVGLARALAFPSPLLLMDEPF 114 H G + + LGL Y QLS G ++R+ + RAL LLL+DE F Sbjct: 97 SLHGGSLGDYPLAAEAWRLLGLEKYGSHLASQLSFGWRRRLDVVRALLGEPRLLLLDEAF 156 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 59.3 bits (142), Expect = 7e-11 Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 15/174 (8%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRCTGLPAGP---------VSMVFQEPRL---LPWAT 48 +GP+ GKTTL++V GL GR P V +VF+ P L +P Sbjct: 36 VGPNGAGKTTLIKVSLGLARRDGGRVLLNGLDPWREPRAREGVGVVFERPNLPSSMPVVE 95 Query: 49 VRENIALVLPPHEGEGTMVEHLMEELGLAPYAGAYPHQLSGGLKQRVGLARALAFPSPLL 108 E+ A ++ + V+ + GL + QLS GLKQR +A AL L Sbjct: 96 FLESAAAIIG---SSPSRVDWAIRAAGLEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFL 152 Query: 109 LMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLILGG 162 + DEP R+ RL +E + ++ SH + E L +A + +L G Sbjct: 153 VADEPTSNLDPLERREVLRLLARLNREHGLSLLVSSHVIVELLRVATRIYVLAG 206 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 58.9 bits (141), Expect = 9e-11 Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 23/200 (11%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRCTG-----LPAGP-------VSMVFQEPRLLPWAT 48 +G + GKTTLL+ + G++ P+ GR P GP + M Q P + P Sbjct: 37 LGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPKGPGDSLRSGIYMASQNPPVYPGIK 96 Query: 49 VRENIALVLPPHEGEG------TMVEHLMEELGLAPYAGAYPHQLSGGLKQRVGLARALA 102 E++A+ L + TM+ E LGL Y ++ +QR+ + +ALA Sbjct: 97 AYEDLAVTLMVAGRKAGLRQARTMLAEASEALGLNIDPDRYLGEMGFSERQRLEVIKALA 156 Query: 103 FPSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLILGG 162 S +L+DEP RL +LV+HR+ E + AD ++IL Sbjct: 157 LGSRAVLLDEPTTHLTPEEAARMLEAAGRL-AASGAAVLLVTHRIGEAMEHADRLVIL-- 213 Query: 163 NPTRVLAILDHPAPHGVEEM 182 + + + + P P EE+ Sbjct: 214 --RKGVKVYEGPPPSSTEEV 231 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 58.2 bits (139), Expect = 2e-10 Identities = 65/201 (32%), Positives = 84/201 (41%), Gaps = 30/201 (14%) Query: 2 GPSACGKTTLLRVLAGLLAPQAGRCTGLPAGPVSMVFQEPRLLPW--------ATVRENI 53 GP+ GK+T+LRV AGL G G G V +P L+P T RE + Sbjct: 36 GPTGGGKSTILRVAAGLATRIYG---GYLRGEVE-ARGKPVLVPQDYDLFILSLTPREEL 91 Query: 54 -----ALVLPPHEGEGTMVEHLMEELGLAPYAGAYPHQLSGGLKQRVGLARALAFPSPLL 108 A LPP E V L EELG+ +LS G +QRV +A ALA + +L Sbjct: 92 EYCYEASGLPPWEARREAVR-LAEELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVL 150 Query: 109 LMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLIL-------- 160 LMDEP R+ RL E V+ HR+ L A V ++ Sbjct: 151 LMDEPLAYQDPLGVESLIRLLRRLDVE---GVVVAEHRVHYLLPAASSVYLVYDGRAKQL 207 Query: 161 -GGNPTRVLAILDHPAPHGVE 180 G VLA + P GV+ Sbjct: 208 GPGEAVEVLAGILEPGLRGVD 228 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 58.2 bits (139), Expect = 2e-10 Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 5/179 (2%) Query: 2 GPSACGKTTLLRVLAGLLAPQAGRCTGLPAG---PVSMVFQEPRLLPWATVRENIALVLP 58 GP+ GKTT +R LAG L P G + P LP ATV + + P Sbjct: 390 GPNGIGKTTFVRTLAGALKPVEGAVYPYVEDLRVSYKPQYISPESLPDATVEQVLKAANP 449 Query: 59 PHEGEGTMVE-HLMEELGLAPYAGAYPHQLSGGLKQRVGLARALAFPSPLLLMDEPFXXX 117 G+ + L++ + L LSGG Q+V +A ALA + + L+DEP Sbjct: 450 AILAPGSWLNLELVKRMRLDKLLERRVRTLSGGELQKVAVAAALAREADVYLLDEPSAYL 509 Query: 118 XXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLILGGNPTRVLAILDHPAP 176 R R+ + + ++V H L ++D ++++ G P V +D P P Sbjct: 510 DVEERVGVARAIRRIVETREAAALVVEHDLMILDYVSDRIMLVTGEP-GVRGHVDDPRP 567 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 57.8 bits (138), Expect = 2e-10 Identities = 52/191 (27%), Positives = 78/191 (40%), Gaps = 31/191 (16%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRC-------TGLPAGP-----VSMVFQEPRLLPWAT 48 +GP+ GKT+LL V+ G+ PQ GR TGL +S FQ L T Sbjct: 33 IGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDITGLKPHQRITLGLSRTFQHSELFHSMT 92 Query: 49 VRENIALVLPPHEGEGTM-------------------VEHLMEELGLAPYAGAYPHQLSG 89 V ENI + L P + EH+++ L L + + L Sbjct: 93 VLENIMVRLHPWTRGSILEKALWAFRAKRWEVEARERAEHVIDLLDLHEHRHSPIGALPP 152 Query: 90 GLKQRVGLARALAFPSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEE 149 G++++V LA ALA ++LMDEP R + T VL+ H +E Sbjct: 153 GIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEKEDIVRAIIETSETMHTTMVLIEHDMEV 212 Query: 150 PLLLADHVLIL 160 + D V+++ Sbjct: 213 VTDVCDRVVVM 223 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 56.6 bits (135), Expect = 5e-10 Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 21/181 (11%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRC------------TGLPA--GPVSMVFQEP--RLL 44 +G S GKTT RV+ L P GR GL ++FQ+P L Sbjct: 68 VGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGLKEFRRRAQIIFQDPYGSLN 127 Query: 45 PWATVRENIALVLPPHEGE-GTMVEH---LMEELGL-APYAGAYPHQLSGGLKQRVGLAR 99 P T+ IA + H + G + E+ L+ ++GL + YPH+ SGG +QR+ +AR Sbjct: 128 PRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQVGLNETHLYRYPHEFSGGQRQRIAIAR 187 Query: 100 ALAFPSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLI 159 LA +++DEP + L ++ T + +SH L ++D++ + Sbjct: 188 VLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTYLFISHDLGVVRYMSDYIAV 247 Query: 160 L 160 + Sbjct: 248 M 248 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 56.2 bits (134), Expect = 6e-10 Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 19/180 (10%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAG--RCTGLPAGP--------VSMVFQEPRLLPWA-TV 49 +GP+ GKTT +R+L+ LL P G R G + ++ R W T Sbjct: 44 LGPNGAGKTTTVRILSTLLDPDGGEARVAGFDVVKERWEVRKRIGVMLSVERGFYWKLTG 103 Query: 50 RENI---ALVLPPHEGE-GTMVEHLMEELGLAPYAGAYP--HQLSGGLKQRVGLARALAF 103 REN+ + +GE + ++ +++ +GL GA ++S G+K R+GLAR L Sbjct: 104 RENLYYFGRIYGIPQGELKSRIKEVLDLVGLTDLGGADKPFEEMSLGMKARLGLARVLLK 163 Query: 104 PSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHV-LILGG 162 +L++DEP V L E RT + +H + E +++D V +I+GG Sbjct: 164 DPEVLILDEPTLGLDPASARTIRGVIRSLASE-GRTIFITTHNMVEAEMISDRVGIIIGG 222 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 56.2 bits (134), Expect = 6e-10 Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 19/176 (10%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAG--RCTGLPA---------GPVSMVFQEPRLLPWATV 49 MGP+ GKTTLLR+++G+L P G R G G + Q+P + T Sbjct: 36 MGPNGSGKTTLLRMVSGVLRPSGGSVRVCGYDVWGDGWREARGLIGFAPQDPPMARRMTG 95 Query: 50 RENIALV-----LPPHEGEGTMVEHLMEELGLAPYAGAYPHQLSGGLKQRVGLARALAFP 104 E I +V L P ++E LG G +LSGG ++ +G+A ALA Sbjct: 96 AEYITVVGGLLGLSPGVAR-REARRVLEMLGFEDVLGRVVARLSGGQRRALGIALALASN 154 Query: 105 SPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLIL 160 ++++DEP + +K RT + SH +E +D VLI+ Sbjct: 155 PEVVVLDEPGSGLDVRARESLWASLRKAFK--GRTVLFSSHDPQEAEAESDRVLIM 208 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 55.8 bits (133), Expect = 8e-10 Identities = 57/177 (32%), Positives = 77/177 (43%), Gaps = 24/177 (13%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGR-------CTGLP------AGPVSMVFQEPRLLPWA 47 +GP+ GKTT L+ + GL+ P GR TG P AG V P+L P Sbjct: 34 IGPNGAGKTTFLKAILGLIKPARGRVFLDGFEATGRPEMVGRYAGYVPQNPSAPKLSPM- 92 Query: 48 TVRENIALVLPPHEGEGTMVEHLMEELGLAPYAGAYPH----QLSGGLKQRVGLARALAF 103 TVRE + L G E +E L G +LS G+ QRV +ARA+A Sbjct: 93 TVREFVETSLRLR-GVTRARERAVEVLHTLGIRGEVLESRLWELSMGMLQRVFIARAIAP 151 Query: 104 PSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLIL 160 +L+MDEP R+ L +E R ++ SH +P LL H I+ Sbjct: 152 DPKMLVMDEPLASVDPAGRMEIARIIAGLARE--RLVLMTSH---DPSLLLGHTDII 203 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 54.3 bits (129), Expect = 2e-09 Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 16/175 (9%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRCTGLPAGPVSMVFQE--PRL-----LP----WAT- 48 +GP+ GKTTLL+ + GL+ P AG P S F++ PR+ LP W T Sbjct: 35 LGPNGAGKTTLLKTILGLVKPSAGEILVEGVNPRSPGFEKLLPRIGYVPELPVVPLWTTP 94 Query: 49 --VRENIALVLPPHEGEGTM-VEHLMEELGLAPYAGAYPHQLSGGLKQRVGLARALAFPS 105 + E +A + E + +E +GLA +LS G ++RV +A+A Sbjct: 95 CILLETLARLEGYTSVEARVRAREALEVVGLAGECETPIGKLSKGARKRVLVAQAFIGER 154 Query: 106 PLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLIL 160 LL++DEP+ + + +E T ++ SH L E +A HVL+L Sbjct: 155 ELLVLDEPYSGLDPEWVYRVRELLRTVARE-GATVIVSSHILRELEDIATHVLVL 208 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 53.9 bits (128), Expect = 3e-09 Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 16/176 (9%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRC-------TGLPAGP-----VSMVFQEPRLLPWAT 48 +G + GKTT L ++GLL P+ G TGLPA +S V + + P T Sbjct: 38 LGGNGAGKTTTLLTISGLLKPRNGSIIWQGRDITGLPAFKRVEEGISHVPEGRGIFPRLT 97 Query: 49 VRENIALVLPPHEGEGTMVEHLMEELGLAPYAGAYPHQL----SGGLKQRVGLARALAFP 104 V EN+ + + + L + + P A QL SGG +Q + +ARAL Sbjct: 98 VYENLRVAASTRRAKEHFQDSLEQVYTIFPILKARRSQLAGTLSGGEQQMLAIARALIQR 157 Query: 105 SPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLIL 160 LL+MDEP + RL +E T +LV + L +AD ++ Sbjct: 158 PILLMMDEPSLGLAPKLARDVIYLASRLREELGVTILLVEQNVGLSLKVADRGYVM 213 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 48.9 bits (115), Expect = 1e-07 Identities = 52/206 (25%), Positives = 79/206 (38%), Gaps = 39/206 (18%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGR-------CTGLPAGPVSMV-----FQEPRLLPWAT 48 +GP+ GKTTL+ V++G P GR TG+ +S + FQ P+ T Sbjct: 38 IGPNGSGKTTLVNVISGFYKPDGGRVLFKGRDITGMSPHEISKLGLVRTFQIPKPFTNLT 97 Query: 49 VRENIALVLPPHEGEGTMVEHLMEEL-------------------GLAPYAGAYPHQLSG 89 V EN+ L GE + L L GL +LSG Sbjct: 98 VLENV-LTAADSPGENVYLAGLARRLWLGFEKRAAARAFEILGWVGLDHMWDRRSGELSG 156 Query: 90 GLKQRVGLARALAFPSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEE 149 G + + +ARA+ + +++MDEP L +E+ T +++ HR+ Sbjct: 157 GQMKLLEIARAIMKGAEMIIMDEPAAGVNPRLAGSIMERIKYLAREKGITFLIIEHRIGL 216 Query: 150 PLLLADHV-------LILGGNPTRVL 168 D V +I G P VL Sbjct: 217 VKEYVDRVYAMSMGKVIASGKPDEVL 242 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 48.5 bits (114), Expect = 1e-07 Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 15/174 (8%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAG----------RCTGLPAGPVSMVFQ----EPRLLPW 46 +GP+ GKTT +++L+ LL P +G R G + +V Q + + W Sbjct: 38 LGPNGAGKTTTIKMLSTLLRPTSGEAWIAGYSIVREPGNVRRVIGLVPQDLTADDEMSGW 97 Query: 47 ATVRENIALVLPPHEGEGTMVEHLMEELGLAPYAGAYPHQLSGGLKQRVGLARALAFPSP 106 V L P +++ L L A SGG+++++ +A +L Sbjct: 98 DNVYIQARLYGLPSSEARERTREVLDYLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPK 157 Query: 107 LLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLIL 160 +L +DEP R L K T +L +H +EE +L+D V I+ Sbjct: 158 VLFLDEPTLGLDVHSRRSLWRYIEDL-KRSAVTILLTTHYMEEAEMLSDRVAII 210 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 48.1 bits (113), Expect = 2e-07 Identities = 50/173 (28%), Positives = 72/173 (41%), Gaps = 16/173 (9%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGR--CTGLPAGPVSMVFQEPRLLPWATVR---ENIAL 55 +GP+ GKTTLLR+LAG++ P GR G P G V + P R +AL Sbjct: 38 LGPNGSGKTTLLRLLAGIIKPSRGRVEVCGSPPGRVRRMLGYAPASPEVDPRLKAVEVAL 97 Query: 56 VLPPHEGEGTM--------VEHLMEELGLAPYAGAYPHQLSGGLKQRVGLARALAFPSPL 107 + EG V + E+G+ A +LS G ++ V LA LA L Sbjct: 98 LYRYGVSEGVAWGRRDWEEVLAALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGL 157 Query: 108 LLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLIL 160 L+DEP V L + R T++ + + AD V++L Sbjct: 158 ALLDEPHSFLDVSNMRRVTLVLRSL---RGRATIVYTTHDPLAAMAADSVIML 207 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 47.4 bits (111), Expect = 3e-07 Identities = 59/253 (23%), Positives = 96/253 (37%), Gaps = 49/253 (19%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRCTG------------------------LPAGPVSM 36 +G + CGK+ R L L+ P G + ++ Sbjct: 45 VGETGCGKSVTSRALTRLIYPPGRIVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAY 104 Query: 37 VFQEPR--LLPWATVRENIALVLPPHEGEGTMVEHLMEELGLAPYA---------GAYPH 85 +FQ+P L P T+ + + H ++ E + +G+ +YPH Sbjct: 105 IFQDPSAALDPLYTIGYQVGETMLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPH 164 Query: 86 QLSGGLKQRVGLARALAFPSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSH 145 +LSGG+KQR + +L+ LL+ DEP + +L +E T +L++H Sbjct: 165 ELSGGMKQRGVIGISLSNRPKLLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITH 224 Query: 146 RLEEPLLLADHVLIL-GGNPTRVLAILDHPAPHGVEEMTDPRLLPLERGIRRA----LAS 200 L D V ++ GN + AP V+E+ L P R + RA LA Sbjct: 225 NLGLVAEYCDRVAVMYAGN-------IVEEAP--VDELFSNPLHPYTRALIRAVPNPLAK 275 Query: 201 IEESRTSGRTSPS 213 IE T P+ Sbjct: 276 IENLEHIPGTVPN 288 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 47.4 bits (111), Expect = 3e-07 Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 24/181 (13%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRCTG-----------------LPAGPVSMVFQEPRL 43 +GP+ GKTTLL+ ++G++ + GR T + V V + R+ Sbjct: 37 IGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNREPDEIARRGVIYVMEGRRI 96 Query: 44 LPWATVRENIALVLPPHEGEGTMVEHLMEELGLAPYA----GAYPHQLSGGLKQRVGLAR 99 T EN+ V G + + L P G LSGG +Q + +A Sbjct: 97 FKELTTEENLVSVA---YAAGASRDDIRSVLSYFPRLKERLGEKAGNLSGGEQQMLAIAM 153 Query: 100 ALAFPSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLI 159 AL + LL++DEP L +E+ T +L + L ++D+ + Sbjct: 154 ALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHREEGLTILLAEQNARKALEISDYGYV 213 Query: 160 L 160 + Sbjct: 214 I 214 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 47.0 bits (110), Expect = 4e-07 Identities = 46/204 (22%), Positives = 75/204 (36%), Gaps = 44/204 (21%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRCTGLPAGPV-------------------------- 34 +G S CGKTT + + L+ GR P V Sbjct: 66 VGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERRGVKSLGDGFVDLLAVPRRK 125 Query: 35 --------SMVFQEP--RLLPWATVRENIALVLPPHE-----GEGTMVEHLMEELGLAP- 78 +V+Q+P L P T++ + L H MV ++E + L P Sbjct: 126 FKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNAREREEMVARMLEAVKLTPA 185 Query: 79 --YAGAYPHQLSGGLKQRVGLARALAFPSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQ 136 + YPHQLSGG +QRV +ARA L++ DEP + ++ Sbjct: 186 SDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSMLDVSIRAEILELLLGFREKL 245 Query: 137 PRTTVLVSHRLEEPLLLADHVLIL 160 + + ++H L + D + ++ Sbjct: 246 GTSLLFITHDLAVARYICDRIAVM 269 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 45.8 bits (107), Expect = 8e-07 Identities = 52/178 (29%), Positives = 76/178 (42%), Gaps = 21/178 (11%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGR-------CTGLPA-----GPVSMVFQEPRLLPWAT 48 +GP+ GKTTL +++G+ P GR TG PA ++ FQ R L T Sbjct: 36 IGPNGAGKTTLFNIISGIYMPDRGRVIYKGVDITGWPAYRRSRAGIARTFQIVRPLANLT 95 Query: 49 VRENI---ALVLPPHEGEGTMVEHLMEEL---GLAPYAGAYPHQLSGGLKQRVGLARALA 102 V N+ AL+ E E ME + GLA L+ K+R+ LARALA Sbjct: 96 VLNNVIVGALLRTNDIREAR--ERAMEAIDMVGLAGKEDILAKDLNLIEKKRLELARALA 153 Query: 103 FPSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLIL 160 LLL+DE + K + T ++V H + + A+ V++L Sbjct: 154 TQPELLLLDEIAAGLRPREVDDLVYTLLEISK-RGITIIMVEHVMRAVMNFAERVIVL 210 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 43.9 bits (102), Expect = 3e-06 Identities = 51/184 (27%), Positives = 74/184 (40%), Gaps = 26/184 (14%) Query: 2 GPSACGKTTLLRVLAGLLAPQAGRCTGLPAGP-----------VSMVFQEPRLLPWATVR 50 G + GKTT LRVL GLL+ +G L P V + ++ + T Sbjct: 47 GLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPWGGGFERVKGEVGYLPEDASVYERLTGM 106 Query: 51 ENIALVLPPHEGEGTMVEHLMEEL---------GLAPYAGAYPHQLSGGLKQRVGLARAL 101 ENI + G VE L+E LA AG Y S G+K+R+ L L Sbjct: 107 ENILFYARLYSG-WRDVEELVENAVFYSGLSREDLARRAGGY----SKGMKRRLLLGITL 161 Query: 102 AFPSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLILG 161 L+++DEP ++ L +E R ++ +H L +AD V I+ Sbjct: 162 MSKPRLVVLDEPTSGVDPIASNRIKKILRGLSRE-GRAILVTTHDLALAEEIADRVTIIH 220 Query: 162 GNPT 165 G T Sbjct: 221 GGST 224 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 40.0 bits (92), Expect = 5e-05 Identities = 52/202 (25%), Positives = 84/202 (41%), Gaps = 19/202 (9%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRCTGLPAGPVSMVFQEPRL-LPWATVRENIALVLPP 59 +G + GKTTLL++ A LL P G G V Q P L TV E++A Sbjct: 22 LGANGSGKTTLLKLAARLLKPDRGSVEG--PRRVGAALQNPYLGFLGPTVAEDLARTA-- 77 Query: 60 HEGEGTMVEHLMEELGLAPYAGAYPHQLSGGLKQRVGLARALAFPSPLLLMDEPFXXXXX 119 G G ++ L+ E GL + P+ LS G + + + A+++ +++DEP Sbjct: 78 -GGRGEALK-LLREAGLEYASERSPYTLSMGEARILSVLMAISWGPEAVVIDEPTSGLDG 135 Query: 120 XXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADHVLIL-------GGNPTRVLAILD 172 + RL ++ H ++ +A +IL G+ RVL +L Sbjct: 136 SGKRWLASLIARLGV----PVLVAGHDIDFAAAVAGWAVILRDGRVRVSGDMERVLRMLP 191 Query: 173 HPAPHGVEEMTDPRLLPLERGI 194 G+E + LERG+ Sbjct: 192 EETGLGLEPGPAVK-AALERGL 212 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 40.0 bits (92), Expect = 5e-05 Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 25/182 (13%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGR-------CTGLPAGP-----VSMVFQEPRLLPWAT 48 +GP+ GK+TLL+ + G GR T +P ++ +FQ + T Sbjct: 37 VGPNGAGKSTLLKTMFGFTTVYKGRVLFENTDVTHMPPHDRAKIGMTFIFQLENIFRELT 96 Query: 49 VRENIALV---LPPHEGEGTMVEHLMEELGLAP----YAGAYPHQLSGGLKQRVGLARAL 101 V EN+ L LP E + L E + P G LSGG +Q + +A + Sbjct: 97 VYENLRLAGYDLP----EDVFRDRLEEVFSMFPRLKERLGQKAGTLSGGERQMLAMAIGI 152 Query: 102 AFPSPLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEEPLLLADH-VLIL 160 + L+DEP + R+ ++ T VLV ++ L + D VL++ Sbjct: 153 MRKPKVFLIDEP-TAGLSPKLAKEVLSYVRILNKEGYTVVLVEQNVKASLEIGDKGVLVV 211 Query: 161 GG 162 G Sbjct: 212 NG 213 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 39.7 bits (91), Expect = 6e-05 Identities = 45/164 (27%), Positives = 64/164 (39%), Gaps = 18/164 (10%) Query: 1 MGPSACGKTTLLRVLAGLLAPQAGRCTGLPAGPV----SMVFQEPRLLPW-------ATV 49 +GP+ GKTTL R L GL GR L PV +F+ LP T Sbjct: 40 VGPNGAGKTTLFRTLLGLYRADRGR-VALLGEPVERAGGSLFRRVAYLPEDGEPYRNMTG 98 Query: 50 RENIALVLPPHEGEGTMVEHLMEEL----GLAPYAGAYPHQLSGGLKQRVGLARALAFPS 105 E + L + E +E +EE GL G S G+++R+ +A LA Sbjct: 99 HEFLRLYASIYGVED--LEGYLEEASRLSGLGGRLGERVRSYSKGMRRRLLVAAMLALKP 156 Query: 106 PLLLMDEPFXXXXXXXXXXXXRVFHRLWKEQPRTTVLVSHRLEE 149 L ++DEP R+ + T +L SH + E Sbjct: 157 SLAVLDEPTAGLDPVYSVGIRRLLKEYSERHGVTVLLSSHNMYE 200 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 236,724 Number of Sequences: 1700 Number of extensions: 10866 Number of successful extensions: 137 Number of sequences better than 1.0e-04: 38 Number of HSP's better than 0.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 21 Number of HSP's that attempted gapping in prelim test: 72 Number of HSP's gapped (non-prelim): 45 length of query: 213 length of database: 492,079 effective HSP length: 73 effective length of query: 140 effective length of database: 367,979 effective search space: 51517060 effective search space used: 51517060 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719117|ref|YP_003874649.1| transporter [Spirochaeta thermophila DSM 6192] (252 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.139 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 164,606 Number of Sequences: 1700 Number of extensions: 5318 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 252 length of database: 492,079 effective HSP length: 75 effective length of query: 177 effective length of database: 364,579 effective search space: 64530483 effective search space used: 64530483 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719118|ref|YP_003874650.1| tyrosyl-tRNA synthetase [Spirochaeta thermophila DSM 6192] (410 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 418,406 Number of Sequences: 1700 Number of extensions: 18581 Number of successful extensions: 63 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63 Number of HSP's gapped (non-prelim): 0 length of query: 410 length of database: 492,079 effective HSP length: 79 effective length of query: 331 effective length of database: 357,779 effective search space: 118424849 effective search space used: 118424849 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719119|ref|YP_003874651.1| glycyl-tRNA synthetase [Spirochaeta thermophila DSM 6192] (443 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601532|ref|NP_148072.1| glycyl-tRNA synthetase [Aeropyrum p... 188 2e-49 >gi|14601532|ref|NP_148072.1| glycyl-tRNA synthetase [Aeropyrum pernix K1] Length = 583 Score = 188 bits (478), Expect = 2e-49 Identities = 119/358 (33%), Positives = 174/358 (48%), Gaps = 73/358 (20%) Query: 1 MAQVTLDTIVSLCKRRGFVFQSSEVYGGLSSAWDYGPLGVELKNNIERFWWNEMVRKRRN 60 MA+ + +V + KRRGF + S E+YGG++ +D+GPLG LK I W V ++ Sbjct: 1 MAEDLFEKLVEIGKRRGFFWPSYEIYGGVAGFYDWGPLGHLLKRRIIEKWRRYFVLMHQD 60 Query: 61 -IVGLDAAILMHPKVWEASGHVENFHDPLVDCKECKARFRADQI---------------- 103 +V ++ ++ KV+ ASGHVE+F DP+V C C FRAD + Sbjct: 61 HVVEIETPVIGPEKVYIASGHVEHFTDPIVRCTSCGRTFRADHLVEEALGINAEGLSVSE 120 Query: 104 ------DLSAPCPECGAKDSFTEPRQFNLMFKTHLGPVEDESTVVYLRPETAQGIYVNYK 157 + CP C + E FNL+F+T +GP E +V YLRPE AQGI+V +K Sbjct: 121 LDRIIRERGLRCPVCQGELGRVET--FNLLFRTQIGPYE--GSVGYLRPELAQGIFVAFK 176 Query: 158 NCLQSSRLKVPFGIAQVGKAFRNEIVTKNFIFRTCEFEQMEMQFFVHPSE---------- 207 ++ R ++P GIAQVG+ RNEI + + R EF MEM++F+ P + Sbjct: 177 RVYEAMRSRIPLGIAQVGRVGRNEISPRQALVRLREFTIMEMEYFIDPEDQWGSCPFFHR 236 Query: 208 --DKK---------------------------------WFDYWKAERMEYYRKMGVRPEK 232 D K YW A M + +GV + Sbjct: 237 MADSKLPILTYEAKRRGEEKPESFKLEEAVNEGVVISPCLGYWMAVGMRFVEDLGVPSDS 296 Query: 233 LRFHQHGPDELAHYAKEAVDIQYEFP-FGWRELEGVHNRTDYDLSRHSQFSGKDLSYF 289 + F + GP+E AHY+ + D + +GW E+ G R DYDLSRH ++SG+DL+ F Sbjct: 297 IMFEEKGPEERAHYSSQTFDQLVKVSRWGWIEVAGHSYRGDYDLSRHMKYSGQDLTAF 354 Score = 109 bits (273), Expect = 1e-25 Identities = 64/148 (43%), Positives = 91/148 (61%), Gaps = 7/148 (4%) Query: 296 RYIPYIIETSAGLTRSVLMVLSDAYDEEELENGEKRTVLRFHPLIAPITVAVFPLMRRDG 355 R++P+++E S G R+V + L AY E E R VL F IAP+ V PL+ D Sbjct: 432 RFVPHVVEPSFGTDRNVYVALEYAYREVE-----GRVVLAFPRDIAPVQAVVLPLVENDE 486 Query: 356 -LDTYAQNLEEELRDH-FNTFYDESGAIGRRYRRQDEVGTPYCITVDYQTLKDDTVTLRY 413 L A+ + E L + F +YD+SG+IGRRY R DE+G P +T+DYQTL+D TVTLR Sbjct: 487 KLVERARMVYETLVEAGFTVYYDDSGSIGRRYARADEIGVPAAVTIDYQTLEDGTVTLRD 546 Query: 414 RDSMEQVRIHRNEIVSAVQQAIREYRRV 441 RD+ QVRI +E+V +++ I + R+ Sbjct: 547 RDTWRQVRIGADEVVDKLRRFIYDGARL 574 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 423,425 Number of Sequences: 1700 Number of extensions: 18413 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 3 length of query: 443 length of database: 492,079 effective HSP length: 80 effective length of query: 363 effective length of database: 356,079 effective search space: 129256677 effective search space used: 129256677 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719120|ref|YP_003874652.1| glutamyl-tRNA synthetase [Spirochaeta thermophila DSM 6192] (492 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431827|ref|NP_148534.2| glutamyl-tRNA synthetase [Aeropyru... 107 9e-25 >gi|118431827|ref|NP_148534.2| glutamyl-tRNA synthetase [Aeropyrum pernix K1] Length = 574 Score = 107 bits (266), Expect = 9e-25 Identities = 82/248 (33%), Positives = 126/248 (50%), Gaps = 30/248 (12%) Query: 3 VRVRYAPSPTGLQHIGGLRTALFNYFFARSQGGTFILRIEDTD-RERYDERALQDLF-ET 60 V++R+AP+P + H+G R A+ N+ +AR G +LR EDTD R + R DL + Sbjct: 103 VKLRFAPNPDFVIHMGNARPAIVNHEYARMYKGRMVLRFEDTDPRTKTPLREAYDLIRQD 162 Query: 61 FEWLGITWDEXXXXXXXXXXXFQSERKELYQEHARLLVEQGHAYRCFCTPERLEQLRKER 120 +WLG++WDE QS R E++ AR +E+G AY C E E L R Sbjct: 163 LKWLGVSWDEEY---------IQSLRMEVFYSVARRAIERGCAYVDNCGREGKELL--SR 211 Query: 121 GKGRATGYDRHCRKLPPD---EVERLLAEGRPH----VIRFKV-PVEGSTVFEDYLLGRV 172 G+ T R L P+ E+ + EG + V+R K P + D++ R+ Sbjct: 212 GEYCPT------RDLGPEDNLELFEKMLEGEFYEGEAVVRMKTDPRHPNPSLRDWVAMRI 265 Query: 173 EYPNADVNPDPVL-LKSDGFPTYHLANVVDDHLMRITHILRAQEWIPSTPLHVLLYRAFG 231 + + +P P++ + +PTY+ A VDDH+M ITH+LR +E +T + +YR G Sbjct: 266 I--DTEKHPHPLVGSRYLVWPTYNFAVSVDDHMMEITHVLRGKEHQLNTEKQLAVYRCMG 323 Query: 232 WEHPVYCH 239 W P + H Sbjct: 324 WRPPYFIH 331 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 520,146 Number of Sequences: 1700 Number of extensions: 24397 Number of successful extensions: 80 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76 Number of HSP's gapped (non-prelim): 2 length of query: 492 length of database: 492,079 effective HSP length: 81 effective length of query: 411 effective length of database: 354,379 effective search space: 145649769 effective search space used: 145649769 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719121|ref|YP_003874653.1| aspartate aminotransferase [Spirochaeta thermophila DSM 6192] (415 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431794|ref|NP_148487.2| aspartate aminotransferase [Aeropy... 140 6e-35 gi|118431147|ref|NP_147407.2| aspartate aminotransferase [Aeropy... 78 4e-16 gi|14602153|ref|NP_148701.1| aspartate aminotransferase [Aeropyr... 74 9e-15 gi|118430916|ref|NP_147018.2| alanine glyoxylate transaminase [A... 53 1e-08 >gi|118431794|ref|NP_148487.2| aspartate aminotransferase [Aeropyrum pernix K1] Length = 405 Score = 140 bits (353), Expect = 6e-35 Identities = 105/355 (29%), Positives = 171/355 (48%), Gaps = 21/355 (5%) Query: 26 ARRMEEEGFQILKLNIGNPAPFGFNTPDEILHDIIINLPNA-QGYGDSKGIFPARKAVMQ 84 AR++ +EG +++ IG P F TP I L GY ++ GI R+A+ Sbjct: 29 ARKLIQEGRRVISFGIGQP---DFPTPHHIREAAKKALDEGFTGYTETAGIPELREAIAW 85 Query: 85 YYQAKGVFDADTDYIFIGNGVSELISISLQALLNPEDEVLIPAPDYPLWTAVTRLAGGRP 144 Y ++ D + + G I + + L P DEV+IP P Y + V +L G RP Sbjct: 86 YLNSRYGADVSPEEVIATTGAKTAIFLGMALYLRPGDEVIIPDPSYYAYAQVAKLFGARP 145 Query: 145 VHYICDEESD--WIPDIEDIRRKITSRTKGIVVINPNNPTGAVYPREVLEKIYEIACEHN 202 V+ E + DIE I R ++ +T+ IVV NP+NPTG+V+P + +E I++IA Sbjct: 146 VYVPMKFEPGLGFRFDIEGIERAVSEKTRMIVVNNPHNPTGSVFPPDQVEAIHDIARRRG 205 Query: 203 LVIFSDEIYEKIIYDEDARAAYSPMSLIAEDALCLTFNGLSKAYRAAGLRAGWLMISGKK 262 L+I +DEIY+ +Y E + S +SL + NG SK + G R G++++ + Sbjct: 206 LIILADEIYDNFLYTE--KPFKSTLSLPDWRENLVYVNGFSKTFSMTGWRLGYVVLRREV 263 Query: 263 RPLAKDYIEGISLLSSMRLCSNMTAQ-FGIQTALGGYQSIDDLVRPGGRLYEQRNLCYEL 321 P A D L ++ C AQ G+ G + + ++V + + Y++ Sbjct: 264 IPKALD------LAVTIYSCPPSIAQKAGVAALRGDWGPVREMVE---EFRSRARILYDI 314 Query: 322 LNQIPGVSCRKPKGALYCFPKLDA--ERFGIESDELFVLDFLREKKVQVVQGTGF 374 L+Q G+ P+GA Y FP++ + G+ ++L L V V+ GT F Sbjct: 315 LSQAEGIEPYLPEGAFYMFPRVAGLLRKTGLSVEQL-AEKLLYSYGVLVLPGTSF 368 >gi|118431147|ref|NP_147407.2| aspartate aminotransferase [Aeropyrum pernix K1] Length = 401 Score = 78.2 bits (191), Expect = 4e-16 Identities = 91/391 (23%), Positives = 161/391 (41%), Gaps = 33/391 (8%) Query: 28 RMEEEGFQILKLNIGNPAPFGFNTPD---EILHDIIIN--LPNAQGYGDSKGIFPARKAV 82 R+ EG ++ L+ G P GF P E L +++ Y + G R+A+ Sbjct: 26 RLAREGRDVILLSTGQP---GFLPPTFLRERLAQALLDEGFKRLYSYTPTPGYADVREAI 82 Query: 83 MQYYQAKGVFDADTDYIFIGNGVSELISISLQALLNPEDEVLIPAPDYPLWTAVTRLAGG 142 + A G + D I + G E + +L +L P D+V++ P Y + + GG Sbjct: 83 AEDLAALGGPRMEPDDILVTAGGQEAMFATLSTILEPGDKVILMDPTYFGYRPIVEYLGG 142 Query: 143 RPVHYICDEESDWIPDIEDIRRKITSRTKGIVVINPNNPTGAVYPREVLEKIYEIACEHN 202 R + PD E ++ T K +V+++P+NPTG + E + + ++A + Sbjct: 143 RVEWVRAPPSLGFQPDEERLKEAFTRDVKAVVLVSPDNPTGRLLSTESAKLVADLAVDTG 202 Query: 203 LVIFSDEIYEKIIYDEDARAAYSPMSLIAEDALCLTFNGLSKAYRAAGLRAGWL----MI 258 I DE Y+ ++++ + Y +A D ++ N SK G R G+L I Sbjct: 203 AWIVYDEAYKTLVFEGEHVYLYK----LAPDN-TISINTFSKDPGFPGWRLGYLYGPGWI 257 Query: 259 SGKKRPLAKDYIEGISLLSSMRLCSNMTAQFGIQTALGGYQSIDDLVRPGGRLYEQR--N 316 GK R ++++ + C AQ + L + + + R Sbjct: 258 VGKIRLVSEELV----------YCPPSIAQVAAKIYLEDREGRLRHLEYAREFLKTRMEA 307 Query: 317 LCYELLNQIPGVSCRKPKGALYCFPKLDA--ERFGIESDELFVLDFLREKKVQVVQGTGF 374 + L +P +P G+++ L + + I S++L V L E+ V V G F Sbjct: 308 MAGALEEMLPEAVFARPGGSMFITVDLSSYLSKASITSEDLSV-KLLDEESVATVPGRYF 366 Query: 375 NWPHPDHFRIVFLPD-KDTLRDAIGRLADFL 404 R+ F + + +R+ IGRLA L Sbjct: 367 GPSGDTMLRLSFATETPERIREGIGRLARLL 397 >gi|14602153|ref|NP_148701.1| aspartate aminotransferase [Aeropyrum pernix K1] Length = 397 Score = 73.6 bits (179), Expect = 9e-15 Identities = 60/211 (28%), Positives = 100/211 (47%), Gaps = 17/211 (8%) Query: 68 GYGDSKGIFPARKAVMQYYQAKGVFDADTDYIFIGNGVSELISISLQALLNPEDEVLIPA 127 GYG + G R++V Y +G+ D++ I G+ + L+S+ +L+ P D VL Sbjct: 70 GYGWTLGEPGLRESVASVYY-RGLVDSEQVIITTGSAEANLLSVI--SLVAPGDRVLFDM 126 Query: 128 PDYPLWTAVTRLAGGRPVHYICDEESDWIPD----IEDIRRKITSRTKGIVVINPNNPTG 183 P+Y + R+ G R + E W D E I+R+ + + + + NPNNPTG Sbjct: 127 PNYMQIHGLLRMRGARILEAWRKREHRWKLDPGLYAELIKRE---KPRAVFITNPNNPTG 183 Query: 184 AVYPREVLEKIYEIACEHNLVIFSDEIYEKIIYD-EDARAAYSPMSLIAEDALCLTFNGL 242 +V + L +I A ++ DE+Y + + E A P + + A ++ +GL Sbjct: 184 SVAGPKALGEIAAEAARTGSILVFDELYRGLEHSTEPAPTVLEP--ALEQGAHAISVSGL 241 Query: 243 SKAYRAAGLRAGWLMISGKKRP----LAKDY 269 SK Y GLR GW + ++ + KDY Sbjct: 242 SKVYGLPGLRIGWAAATSRRLRDRMWMVKDY 272 >gi|118430916|ref|NP_147018.2| alanine glyoxylate transaminase [Aeropyrum pernix K1] Length = 403 Score = 53.1 bits (126), Expect = 1e-08 Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 15/232 (6%) Query: 32 EGFQILKLNIGNPAPFGFNTPDEILHDIIINLPNAQG-----YGDSKGIFPARKAVMQYY 86 EG +++ G P P F P E L DI N+ + G Y + G+ R+ + + Sbjct: 28 EGKRVISFAGGLPDPRVF--PAEELADIARNVVSELGDKALQYSPTPGVSIFRERALSFL 85 Query: 87 QAKGVFDADTDYIFIGNGVSELISISLQALLNPEDEVLIPAPDYPLWTAVTRLAGGRPVH 146 + G+ +D + + G E + ++ + L+P D V++ P Y V + G R V Sbjct: 86 ERMGLKTSDRQ-LLVTTGSQEALFLTALSTLSPGDVVIMEEPGYLAAINVFKALGARIVP 144 Query: 147 YICDEESDWIPDIEDIRRKITSR--TKGIVVINP--NNPTGAVYPREVLEKIYEIACEHN 202 D++ + + ++ + +V NP NNP G P + ++ ++A ++ Sbjct: 145 VPVDDKGLNTGVLAETLDRLDAEGVKPKLVYTNPTCNNPNGTTMPLDRRRELLQLASNYD 204 Query: 203 LVIFSDEIYEKIIYDEDARAAYSPMSLIAEDALCLTFNGLSKAYRAAGLRAG 254 +++ D+ Y I +++ P+ + + + SK A GLR G Sbjct: 205 MLVIEDDPYSHIAFEKTGEEV--PLQALDSEGRVVYVTTFSKIL-APGLRLG 253 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 433,930 Number of Sequences: 1700 Number of extensions: 19911 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 4 length of query: 415 length of database: 492,079 effective HSP length: 79 effective length of query: 336 effective length of database: 357,779 effective search space: 120213744 effective search space used: 120213744 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719122|ref|YP_003874654.1| hypothetical protein STHERM_c14410 [Spirochaeta thermophila DSM 6192] (266 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.142 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 245,995 Number of Sequences: 1700 Number of extensions: 10188 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 266 length of database: 492,079 effective HSP length: 75 effective length of query: 191 effective length of database: 364,579 effective search space: 69634589 effective search space used: 69634589 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719123|ref|YP_003874655.1| HD domain-containing protein [Spirochaeta thermophila DSM 6192] (403 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 397,308 Number of Sequences: 1700 Number of extensions: 16942 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 0 length of query: 403 length of database: 492,079 effective HSP length: 79 effective length of query: 324 effective length of database: 357,779 effective search space: 115920396 effective search space used: 115920396 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719124|ref|YP_003874656.1| hypothetical protein STHERM_c14430 [Spirochaeta thermophila DSM 6192] (247 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.146 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 208,096 Number of Sequences: 1700 Number of extensions: 7808 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 247 length of database: 492,079 effective HSP length: 75 effective length of query: 172 effective length of database: 364,579 effective search space: 62707588 effective search space used: 62707588 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719125|ref|YP_003874657.1| hypothetical protein STHERM_c14440 [Spirochaeta thermophila DSM 6192] (538 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 574,730 Number of Sequences: 1700 Number of extensions: 26444 Number of successful extensions: 74 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74 Number of HSP's gapped (non-prelim): 0 length of query: 538 length of database: 492,079 effective HSP length: 81 effective length of query: 457 effective length of database: 354,379 effective search space: 161951203 effective search space used: 161951203 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719126|ref|YP_003874658.1| hypothetical protein STHERM_c14450 [Spirochaeta thermophila DSM 6192] (170 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 179,586 Number of Sequences: 1700 Number of extensions: 7723 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 170 length of database: 492,079 effective HSP length: 71 effective length of query: 99 effective length of database: 371,379 effective search space: 36766521 effective search space used: 36766521 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719127|ref|YP_003874659.1| hypothetical protein STHERM_c14460 [Spirochaeta thermophila DSM 6192] (335 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 407,260 Number of Sequences: 1700 Number of extensions: 20812 Number of successful extensions: 78 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78 Number of HSP's gapped (non-prelim): 0 length of query: 335 length of database: 492,079 effective HSP length: 77 effective length of query: 258 effective length of database: 361,179 effective search space: 93184182 effective search space used: 93184182 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719128|ref|YP_003874660.1| biotin synthase [Spirochaeta thermophila DSM 6192] (181 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.145 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 131,733 Number of Sequences: 1700 Number of extensions: 3504 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 181 length of database: 492,079 effective HSP length: 71 effective length of query: 110 effective length of database: 371,379 effective search space: 40851690 effective search space used: 40851690 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719129|ref|YP_003874661.1| membrane associated ATPase [Spirochaeta thermophila DSM 6192] (237 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 103 3e-24 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 103 5e-24 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 101 2e-23 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 96 1e-21 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 95 1e-21 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 92 1e-20 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 92 2e-20 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 91 3e-20 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 88 2e-19 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 88 2e-19 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 87 4e-19 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 84 3e-18 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 83 7e-18 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 82 1e-17 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 82 2e-17 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 80 4e-17 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 80 6e-17 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 79 1e-16 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 78 2e-16 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 76 7e-16 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 72 1e-14 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 71 2e-14 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 71 3e-14 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 69 1e-13 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 69 1e-13 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 67 3e-13 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 65 2e-12 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 64 3e-12 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 64 3e-12 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 62 2e-11 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 61 2e-11 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 60 6e-11 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 57 3e-10 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 57 3e-10 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 56 7e-10 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 55 2e-09 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 55 2e-09 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 55 2e-09 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 54 5e-09 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 50 7e-08 gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad5... 43 6e-06 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 103 bits (258), Expect = 3e-24 Identities = 76/219 (34%), Positives = 111/219 (50%), Gaps = 4/219 (1%) Query: 5 VEGLSHRFPDGSWGLKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXX 64 +EG+ RF + LK + L I +GE V+L+G +G GKT +R + GL +P Sbjct: 6 LEGIVKRFGK-TVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFDG 64 Query: 65 XXXXXXPFFARRRVGLVFQSAEAQLVRHTVRDEVALGPENLGLPGDEVARRVEGVMGRLG 124 P R V +VFQS A V D +A + LP DE+ RRV L Sbjct: 65 RDVTGLPP-KDRNVAMVFQSY-ALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAAELLE 122 Query: 125 ISHLAARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLD-LPGIRSVLEALEVLER 183 I HL R+P LSGG+++RVA+A +V EP L++DEP +NLD + I+ E ++ R Sbjct: 123 IDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKLQRR 182 Query: 184 EGRGWVVISHEVWWLKDRVDRVVAMEGGRVVLEGRPEEV 222 G + ++H+ DR+V M G + G P +V Sbjct: 183 LGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDV 221 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 103 bits (256), Expect = 5e-24 Identities = 69/208 (33%), Positives = 104/208 (50%), Gaps = 6/208 (2%) Query: 19 LKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPFFARRRV 78 L+ V + E ++G +G GKT +++ + GL +P P RR V Sbjct: 21 LRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFGGVDYTGLPP-ERRSV 79 Query: 79 GLVFQSAEAQLVRHTVRDEVALGPENLGLPGDEVARRVEGVMGRLGIS---HLAARHPRT 135 G VFQ A TV D VA G G G EV R+VE + +G++ R Sbjct: 80 GFVFQDL-ALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWALETVGLTPPREFMGRRVTG 138 Query: 136 LSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLERE-GRGWVVISHE 194 LSGG+++RVA+A + EP L+LDEP ++LD + +L L+ L+R+ G + ++H+ Sbjct: 139 LSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQRKLGSTMIYVTHD 198 Query: 195 VWWLKDRVDRVVAMEGGRVVLEGRPEEV 222 W + D +V M GR+V G P EV Sbjct: 199 QWEAMELADTLVIMRDGRIVQHGTPSEV 226 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 101 bits (251), Expect = 2e-23 Identities = 68/208 (32%), Positives = 105/208 (50%), Gaps = 4/208 (1%) Query: 19 LKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPF----FA 74 LK V +++ GE+++++G +GSGK+ L++ + L +P Sbjct: 20 LKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVFRGVDVTRLSGSQLRMV 79 Query: 75 RRRVGLVFQSAEAQLVRHTVRDEVALGPENLGLPGDEVARRVEGVMGRLGISHLAARHPR 134 RR++G + QS +R+ + LGL + R + LGI LA RHP Sbjct: 80 RRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAEERAVKYLSMLGIEDLAHRHPA 139 Query: 135 TLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLEREGRGWVVISHE 194 LSGG+++R A+A L MEP L+LDEP + LD VLEAL + G+ +V++HE Sbjct: 140 RLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEALFRVATLGKAMIVVTHE 199 Query: 195 VWWLKDRVDRVVAMEGGRVVLEGRPEEV 222 + DR+ ME G V EG+P E+ Sbjct: 200 ADFAVKVADRMAFMEDGIVKEEGKPSEL 227 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 95.5 bits (236), Expect = 1e-21 Identities = 74/221 (33%), Positives = 107/221 (48%), Gaps = 4/221 (1%) Query: 3 IVVEGLSHRFPDGSWGLKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXX 62 I +E ++ RF + + L V L I +GE L+G +G GKT +R + G P E Sbjct: 4 IRLESVTKRFGN-TVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYI 62 Query: 63 XXXXXXXXPFFARRRVGLVFQSAEAQLVRHTVRDEVALGPENLGLPGDEVARRVEGVMGR 122 + R +VFQ+ A V D +A G + LP E+ RRV Sbjct: 63 GSRDVTMLKPY-ERNTAMVFQNY-ALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWAAEL 120 Query: 123 LGISHLAARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLP-GIRSVLEALEVL 181 L I HL R+P LSGG+++RVA+A +V EP L++DEP +NLD ++ E + + Sbjct: 121 LEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQ 180 Query: 182 EREGRGWVVISHEVWWLKDRVDRVVAMEGGRVVLEGRPEEV 222 +R G V ++H+ RV M GRV G P EV Sbjct: 181 KRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEV 221 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 95.1 bits (235), Expect = 1e-21 Identities = 68/202 (33%), Positives = 96/202 (47%), Gaps = 1/202 (0%) Query: 26 IHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPFFARRRVGLVFQSA 85 I GE L+G NG+GKT ++ L L +PT P RR +GLV Q Sbjct: 29 IARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWIAGYSIVREPGNVRRVIGLVPQDL 88 Query: 86 EAQLVRHTVRDEVALGPENLGLPGDEVARRVEGVMGRLGISHLAARHPRTLSGGEKRRVA 145 A + D V + GLP E R V+ L + A R T SGG +R++ Sbjct: 89 TAD-DEMSGWDNVYIQARLYGLPSSEARERTREVLDYLDLMEAAHRRVATYSGGMRRKLE 147 Query: 146 IAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLEREGRGWVVISHEVWWLKDRVDRV 205 IA LV P L LDEP LD+ RS+ +E L+R ++ +H + + DRV Sbjct: 148 IAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLKRSAVTILLTTHYMEEAEMLSDRV 207 Query: 206 VAMEGGRVVLEGRPEEVGGRLE 227 ++ GR+V EG PEE+ R++ Sbjct: 208 AIIDRGRIVAEGTPEELKARVK 229 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 92.0 bits (227), Expect = 1e-20 Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 8/232 (3%) Query: 3 IVVEGLSHRFPDGSW------GLKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPT 56 I GL RF G LK V +++EGE +G NG+GKT +R L L P Sbjct: 6 IEARGLVKRFVSGRIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPD 65 Query: 57 EXXXXXXXXXXXXXPFFARRRVGLVFQSAEAQLVRHTVRDEVALGPENLGLPGDEVARRV 116 + R+R+G++ + T R+ + G+P E+ R+ Sbjct: 66 GGEARVAGFDVVKERWEVRKRIGVMLSVERGFYWKLTGRENLYYFGRIYGIPQGELKSRI 125 Query: 117 EGVMGRLGISHL--AARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSV 174 + V+ +G++ L A + +S G K R+ +A VL+ +P L+LDEP LD R++ Sbjct: 126 KEVLDLVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTI 185 Query: 175 LEALEVLEREGRGWVVISHEVWWLKDRVDRVVAMEGGRVVLEGRPEEVGGRL 226 + L EGR + +H + + DRV + GGR+ +EG P+E+ R+ Sbjct: 186 RGVIRSLASEGRTIFITTHNMVEAEMISDRVGIIIGGRIAMEGTPDELKRRV 237 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 91.7 bits (226), Expect = 2e-20 Identities = 76/225 (33%), Positives = 112/225 (49%), Gaps = 8/225 (3%) Query: 3 IVVEGLSHRFPDGSWGLKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXX 62 I +EG+ RF + V L+I +GE +L+G +G GKT +R + GL P E Sbjct: 4 IRLEGVVKRFGKVV-AVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILI 62 Query: 63 XXXXXXXXPFFARRRVGLVFQSAEAQLVRHTVRDEVA----LGPENLGLPGDEVARRVEG 118 R V +VFQ+ A +V D +A L + +GL D++ RRV Sbjct: 63 DGEDVTFKDP-KDRNVAMVFQNY-ALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIE 120 Query: 119 VMGRLGISHLAARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEAL 178 V L I L R P LSGG+++RVA+A LV P ++DEP +NLD ++ L Sbjct: 121 VAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAEL 180 Query: 179 EVLEREGR-GWVVISHEVWWLKDRVDRVVAMEGGRVVLEGRPEEV 222 + L+++ + V ++H+ DR+ M GRVV G PEEV Sbjct: 181 KKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEV 225 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 90.5 bits (223), Expect = 3e-20 Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 7/207 (3%) Query: 19 LKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPFFARRRV 78 ++DV L I + E V ++G +GSGKT L+ + G+ +P+ P +R + Sbjct: 19 VRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFNDVDVTDLPP-NKRNI 77 Query: 79 GLVFQSAEAQLVRHTVRDEVA--LGPENLGLPGDEVARRVEGVMGRLGISHLAARHPRTL 136 GLVFQ+ A TV + +A L N G P + +V V LGI L R+P L Sbjct: 78 GLVFQNY-ALYPHMTVYENIAFPLRLRNFGEPA--IKEKVLSVAKLLGIEGLLDRYPAQL 134 Query: 137 SGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLERE-GRGWVVISHEV 195 SGG+++RVA+A LV EP L+LDEP +NLD + L+ L++E G + ++H+ Sbjct: 135 SGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQKELGITAIYVTHDQ 194 Query: 196 WWLKDRVDRVVAMEGGRVVLEGRPEEV 222 DR+ + G + G+P +V Sbjct: 195 SEALAMADRIAIIASGVIQQVGKPWDV 221 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 88.2 bits (217), Expect = 2e-19 Identities = 75/248 (30%), Positives = 115/248 (46%), Gaps = 19/248 (7%) Query: 5 VEGLSHRFPDGSWGLKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXX 64 VE L RF G L V L I G+ LL+G NGSGKT L+ + G +P Sbjct: 9 VEDLEKRF-GGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLFKG 67 Query: 65 XXXXXXPFFARRRVGLV--FQSAEAQLVRHTVRDEVALGP----ENLGLPG--------- 109 ++GLV FQ + TV + V EN+ L G Sbjct: 68 RDITGMSPHEISKLGLVRTFQIPK-PFTNLTVLENVLTAADSPGENVYLAGLARRLWLGF 126 Query: 110 -DEVARRVEGVMGRLGISHLAARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDL 168 A R ++G +G+ H+ R LSGG+ + + IA ++ +++DEP A ++ Sbjct: 127 EKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVNP 186 Query: 169 PGIRSVLEALEVLERE-GRGWVVISHEVWWLKDRVDRVVAMEGGRVVLEGRPEEVGGRLE 227 S++E ++ L RE G +++I H + +K+ VDRV AM G+V+ G+P+EV Sbjct: 187 RLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEVLNNPV 246 Query: 228 TLGIWEGG 235 L + GG Sbjct: 247 VLESYLGG 254 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 87.8 bits (216), Expect = 2e-19 Identities = 67/209 (32%), Positives = 106/209 (50%), Gaps = 10/209 (4%) Query: 24 LTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPFFA----RRRVG 79 L I EGE + +VG +G GKT L + +VG+ +P++ RR++ Sbjct: 43 LGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARDRRLRRKLQ 102 Query: 80 LVFQSAEAQL-VRHTVRDEVALGPENLGLP-GDEVARRVEGVMGRLGIS---HLAARHPR 134 +VFQ L V D+VA GL G+E RR ++ +G++ R P Sbjct: 103 MVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETVGLTPGREFYWRKPH 162 Query: 135 TLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLE-ALEVLEREGRGWVVISH 193 LSGG+++RVAIA LV+EP +V DEP + +D+ S+L+ ++ R G V+I+H Sbjct: 163 QLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTGATIVLITH 222 Query: 194 EVWWLKDRVDRVVAMEGGRVVLEGRPEEV 222 ++ + DR+ M G++V G P V Sbjct: 223 DIAVARAVADRIAVMYLGKIVEVGEPRSV 251 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 87.0 bits (214), Expect = 4e-19 Identities = 69/224 (30%), Positives = 103/224 (45%), Gaps = 5/224 (2%) Query: 19 LKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPFFARRRV 78 L V L + G L+G NG+GKT L++ L L P R R+ Sbjct: 29 LDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANNVRSRI 88 Query: 79 GLVFQSAEAQLVRHTVRDEVALGPENLGLPGDEVARRVEGVMGRLGISHLAARHPRTLSG 138 G+V A R + D + + G+P E RRV+ ++ +G+ A S Sbjct: 89 GVVLGGERALYWRLSGWDNLWFFSQLYGIPPREAKRRVKELLEIVGLEEWAHVRVENYSK 148 Query: 139 GEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLEREGRGWVVISHEVWWL 198 G K+R+ IA L+ +P L+LDEP LD R V + + REGR ++ +H + Sbjct: 149 GMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVLLTTHYMVEA 208 Query: 199 KDRVDRVVAMEGGRVVLEGRPEE----VGGR-LETLGIWEGGRV 237 ++ DRV + GR+V EG PE+ VGG + L + G RV Sbjct: 209 EELSDRVAIISKGRIVAEGPPEDLKSLVGGESVIELKVMGGDRV 252 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 84.0 bits (206), Expect = 3e-18 Identities = 73/223 (32%), Positives = 100/223 (44%), Gaps = 11/223 (4%) Query: 1 MSIV-VEGLSHRFPDGSWGLKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXX 59 MS+V + + +R+P G W L+ V L G LL G G GK+ ++R GLA Sbjct: 1 MSVVRLRDVWYRYPGGGWVLRGVSLEAPRGI-TLLAGPTGGGKSTILRVAAGLA------ 53 Query: 60 XXXXXXXXXXXPFFARRRVGLVFQSAEAQLVRHTVRDEVALGPENLGLPGDEVARRVEGV 119 AR + LV Q + ++ T R+E+ E GLP E R + Sbjct: 54 -TRIYGGYLRGEVEARGKPVLVPQDYDLFILSLTPREELEYCYEASGLPPWEARREAVRL 112 Query: 120 MGRLGISHLAARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALE 179 LGI L R LS GE++RVAIA L + L++DEP A D G+ S++ L Sbjct: 113 AEELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVESLIRLLR 172 Query: 180 VLEREGRGWVVISHEVWWLKDRVDRVVAMEGGRVVLEGRPEEV 222 L+ E G VV H V +L V + GR G E V Sbjct: 173 RLDVE--GVVVAEHRVHYLLPAASSVYLVYDGRAKQLGPGEAV 213 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 82.8 bits (203), Expect = 7e-18 Identities = 65/213 (30%), Positives = 97/213 (45%), Gaps = 1/213 (0%) Query: 2 SIVVEGLSHRFPDGSWGLKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXX 61 ++ + G+ +PDG L +V T+ GE L+G NG+GKT LMR L G +PT Sbjct: 12 AVAMRGIVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIY 71 Query: 62 XXXXXXXXXPFFARRRVGLVFQSAEAQLVRH-TVRDEVALGPENLGLPGDEVARRVEGVM 120 + R G+ + +LV TV + +A+ +LGL E RR Sbjct: 72 VWGRKVSWRGPWDAIRNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRTLETA 131 Query: 121 GRLGISHLAARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEV 180 RLG+ A+ L G ++RV I L L+LDEP +NL + L + Sbjct: 132 ERLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLRL 191 Query: 181 LEREGRGWVVISHEVWWLKDRVDRVVAMEGGRV 213 L+ G V I+H++ + DRV + GRV Sbjct: 192 LKDMGVSVVYITHKLGEVVRVADRVTVLRRGRV 224 Score = 56.2 bits (134), Expect = 7e-10 Identities = 61/234 (26%), Positives = 103/234 (44%), Gaps = 19/234 (8%) Query: 1 MSIVVEGLSHRFPDGSWGLKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXX 60 +S+VV+G+ +++V L + EGE V + G G+G+ L+ ++GL +P Sbjct: 268 VSVVVDGVER--------VREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSI 319 Query: 61 XXXXXXXXXXPFFARRRVGLVF-QSAEAQLVRHTVRDEVALGPENLGLPGDEVARRVEGV 119 F R G + + + ++V + +A R+E + Sbjct: 320 EVQGRRIEGSLDFYRAGGGYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRRSRLEDL 379 Query: 120 MGRLGIS-HLAARHPRT----LSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSV 174 RL L AR P T LSGG +++V + ++ LV P LD+ V Sbjct: 380 FRRLVERFRLVARSPWTPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTSFV 439 Query: 175 LEALEVLEREGRGWVVISHEVWWLKDRVDRVVAMEGGRV--VLE---GRPEEVG 223 L L R+G G +++S ++ + + DR+ M GGRV VLE PE++G Sbjct: 440 RNLLSELARQGAGILLVSTDLDEILELSDRIYVMSGGRVTGVLERSQATPEKLG 493 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 82.0 bits (201), Expect = 1e-17 Identities = 70/231 (30%), Positives = 102/231 (44%), Gaps = 24/231 (10%) Query: 2 SIVVEGLSHRFPDGSWGLKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXX 61 S+ +EG+ R+ L+ V ++ G V L+G NGSGKT L+R L G+ +P+ Sbjct: 5 SVRLEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVE 64 Query: 62 XXXXXXXXXPFFARRRVGLVFQSAE----------AQLVRHTVRDEVALGPENLGLPGDE 111 P RR +G S E A L R+ V + VA G + Sbjct: 65 VCGSP----PGRVRRMLGYAPASPEVDPRLKAVEVALLYRYGVSEGVAWGRRDW------ 114 Query: 112 VARRVEGVMGRLGISHLAARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGI 171 V +G +G+ LA R LS G++R V +AGVL P +LDEP + LD+ + Sbjct: 115 --EEVLAALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNM 172 Query: 172 RSVLEALEVLEREGRGWVVISHEVWWLKDRVDRVVAMEGGRVVLEGRPEEV 222 R V L L GR +V + D V+ + G + +G PE V Sbjct: 173 RRVTLVLRSL--RGRATIVYTTHDPLAAMAADSVIMLREGLLHAQGPPEAV 221 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 81.6 bits (200), Expect = 2e-17 Identities = 73/227 (32%), Positives = 107/227 (47%), Gaps = 17/227 (7%) Query: 2 SIVVEGLSHRFPDGSWGLKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXX 61 ++ EG+ R G W LKDV LT+ G +VG NG+GKT L R L+GL + Sbjct: 8 AVEAEGVWKRL-GGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVA 66 Query: 62 XXXXXXXXXPFFARRRVGLVFQSAE--AQLVRHTVRDEVA--LGPENLGLPGDEVARRVE 117 RRV + + E + H A G E+L +E A R+ Sbjct: 67 LLGEPVERAGGSLFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLEGYLEE-ASRLS 125 Query: 118 GVMGRLGISHLAARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLD---LPGIRSV 174 G+ GRLG R+ S G +RR+ +A +L ++P+ VLDEP A LD GIR + Sbjct: 126 GLGGRLG------ERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRL 179 Query: 175 LEALEVLEREGRGWVVISHEVWWLKDRVDRVVAMEGGRVVLEGRPEE 221 L+ E ER G ++ SH ++ ++ + + GR+V G P E Sbjct: 180 LK--EYSERHGVTVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGE 224 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 80.5 bits (197), Expect = 4e-17 Identities = 63/212 (29%), Positives = 112/212 (52%), Gaps = 13/212 (6%) Query: 21 DVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPT------EXXXXXXXXXXXXXPFFA 74 +V + I G+ + LVG +GSGKT R ++ L +PT + F Sbjct: 54 NVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGLKEF-- 111 Query: 75 RRRVGLVFQSAEAQL-VRHTVRDEVALGPENLGLPGDEVARRVEGVMGRLGIS--HLAAR 131 RRR ++FQ L R T+ + +A + G+ ++ + ++ ++G++ HL R Sbjct: 112 RRRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQVGLNETHLY-R 170 Query: 132 HPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLERE-GRGWVV 190 +P SGG+++R+AIA VL ++P ++VLDEP + LD+ +L L+ L+R+ ++ Sbjct: 171 YPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTYLF 230 Query: 191 ISHEVWWLKDRVDRVVAMEGGRVVLEGRPEEV 222 ISH++ ++ D + M G++V G EEV Sbjct: 231 ISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEV 262 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 79.7 bits (195), Expect = 6e-17 Identities = 68/233 (29%), Positives = 109/233 (46%), Gaps = 14/233 (6%) Query: 1 MSIVVEGLSHRFPDGSW---GLKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTE 57 +++VVEG+ + L++V L++ GE + ++G +GSGKT L+ + G+ +P Sbjct: 9 LAVVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNA 68 Query: 58 XXXXXXXXXXXXXPF-----FARRRVGLVFQSAEAQLVRHTVRDEVALGPENLGLPGDEV 112 F RVG VFQ + L+ E L P + L G Sbjct: 69 GRVIVDGFEVSSAGGEELRRFRLERVGYVFQ--QHNLIPTLTALENILLP--MALAGKAN 124 Query: 113 ARRVEGVMGRLGISHLAARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDL-PGI 171 R + ++ R+G+ R+P LSGGE++R+A+A L +P +V DEP LD+ G Sbjct: 125 RLRGQELLRRVGLGGKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGE 184 Query: 172 RSVLEALEVLEREGRGWVVISHEVWWLKDRVDRVVAMEGGRVVLEGRPEEVGG 224 R V LE G+ V+ +H+ + DRV +E GR+ P + G Sbjct: 185 RIVRILLEEAHSRGKTVVLTTHDP-RVARMADRVAVIEDGRLRGVYSPSRIAG 236 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 79.0 bits (193), Expect = 1e-16 Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 6/223 (2%) Query: 2 SIVVEGLSHRFPDGSWGLKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXX 61 ++ GL RF G + V ++ +GER ++G NGSGKT L+R + G+ +P+ Sbjct: 4 TVEARGLRKRF-GGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVR 62 Query: 62 XXXXXXXXXPFFARRRVGLV-FQSAEAQLVRH-TVRDEVALGPENLGLPGDEVARRVEGV 119 + R GL+ F + + R T + + + LGL R V Sbjct: 63 VCGYDVWGDGW--REARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREARRV 120 Query: 120 MGRLGISHLAARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALE 179 + LG + R LSGG++R + IA L P +VLDEP + LD+ S+ +L Sbjct: 121 LEMLGFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASLR 180 Query: 180 VLEREGRGWVVISHEVWWLKDRVDRVVAMEGGRVVLEGRPEEV 222 + GR + SH+ + DRV+ M GR+ G+P E+ Sbjct: 181 KAFK-GRTVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPREL 222 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 77.8 bits (190), Expect = 2e-16 Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 14/215 (6%) Query: 22 VWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPF--------- 72 V L++++GE + +VG +GSGK+ L + L P Sbjct: 26 VSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRILYSGVDLLSLAGEELRR 85 Query: 73 FARRRVGLVFQSAEAQLVRH-TVRDEVA--LGPENLGLPGDEVARRVEGVMGRLGISH-L 128 + R +G+VFQ A L + TV ++A L L G E + +GI Sbjct: 86 YRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLASSGSEAESMAGDALELVGIPRDR 145 Query: 129 AARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLERE-GRG 187 A+ +P LSGG+++RVAIA + +EP L+ DEP LD+ +++ ++ L+ E G Sbjct: 146 ASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKIMDLMKKLQEERGLT 205 Query: 188 WVVISHEVWWLKDRVDRVVAMEGGRVVLEGRPEEV 222 ++++H++ + DR+ M G +V G E+V Sbjct: 206 VMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDV 240 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 76.3 bits (186), Expect = 7e-16 Identities = 73/207 (35%), Positives = 97/207 (46%), Gaps = 11/207 (5%) Query: 19 LKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPFFARRRV 78 L V L + GE V LVG NG+GKT L++ +GLA+ P AR V Sbjct: 20 LDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLLNGLDPWREPR-AREGV 78 Query: 79 GLVFQSAEAQLVRHTVRDEVALGPENLGLPGDEV--ARRVEGVMGRLGISHLAARHPRTL 136 G+VF+ V + + +G V A R G+ G H P+ L Sbjct: 79 GVVFERPNLPSSMPVV-EFLESAAAIIGSSPSRVDWAIRAAGLEG-----HEWKTFPQ-L 131 Query: 137 SGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLERE-GRGWVVISHEV 195 S G K+R AIA L+ EP +LV DEP +NLD R VL L L RE G +V SH + Sbjct: 132 SAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLNREHGLSLLVSSHVI 191 Query: 196 WWLKDRVDRVVAMEGGRVVLEGRPEEV 222 L R+ + GGR+ EG PE++ Sbjct: 192 VELLRVATRIYVLAGGRLAAEGSPEDL 218 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 72.0 bits (175), Expect = 1e-14 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 4/218 (1%) Query: 19 LKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPFFARRRV 78 L DV L I G ++VG NG+GK+ L++ + G + P R ++ Sbjct: 21 LFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLFENTDVTHMPPHDRAKI 80 Query: 79 GLVFQSAEAQLVRH-TVRDEVALGPENLGLPGDEVARRVEGVMGRLG-ISHLAARHPRTL 136 G+ F + R TV + + L LP D R+E V + + TL Sbjct: 81 GMTFIFQLENIFRELTVYENLRLA--GYDLPEDVFRDRLEEVFSMFPRLKERLGQKAGTL 138 Query: 137 SGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLEREGRGWVVISHEVW 196 SGGE++ +A+A ++ +P ++DEP A L + VL + +L +EG V++ V Sbjct: 139 SGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVRILNKEGYTVVLVEQNVK 198 Query: 197 WLKDRVDRVVAMEGGRVVLEGRPEEVGGRLETLGIWEG 234 + D+ V + GR+ +G EE+ R + ++ G Sbjct: 199 ASLEIGDKGVLVVNGRIAFDGPAEELLARKDLAKMYLG 236 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 71.2 bits (173), Expect = 2e-14 Identities = 65/245 (26%), Positives = 110/245 (44%), Gaps = 45/245 (18%) Query: 22 VWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQP-------------------------- 55 V L++ +GE + +VG +GSGKT L + ++GL +P Sbjct: 33 VSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELEEAVSIYEALKR 92 Query: 56 -----TEXXXXXXXXXXXXXPFFA--------RRRVGLVFQSAEAQLVRHTVRDEVALGP 102 E P++ RR+V +V Q + L E+ P Sbjct: 93 GENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMKVGEIIGEP 152 Query: 103 ---ENLGLPGDEVARRVEGVMGRLGIS-HLAARHPRTLSGGEKRRVAIAGVLVMEPAYLV 158 + + V RRV V+ +G+ A R+P LSGG+++RVAIA L + P LV Sbjct: 153 VRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIARALALNPKILV 212 Query: 159 LDEPFANLDLPGIRSVLEAL-EVLEREGRGWVVISHEVWWLKDRVDRVVAMEGGRVVLEG 217 LDEP + LD+ +L L E+ ++ G +++I+H++ ++ VV M G+ ++E Sbjct: 213 LDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMYSGK-IMES 271 Query: 218 RPEEV 222 P+ + Sbjct: 272 APKHI 276 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 70.9 bits (172), Expect = 3e-14 Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 9/213 (4%) Query: 15 GSWGLKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPFFA 74 G LK V ++ GERV L+G NG+GKT L + G+ P P + Sbjct: 16 GIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYKGVDITGWPAYR 75 Query: 75 RRRVGLV--FQSAEAQLVRHTVRDEVALGPENLGLPGDEVARRVEGVMGRLGISHLAARH 132 R R G+ FQ L TV + V +G L +++ E M + + LA + Sbjct: 76 RSRAGIARTFQIVRP-LANLTVLNNVIVGAL---LRTNDIREARERAMEAIDMVGLAGKE 131 Query: 133 P---RTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLEREGRGWV 189 + L+ EK+R+ +A L +P L+LDE A L + ++ L + + G + Sbjct: 132 DILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLEISKRGITII 191 Query: 190 VISHEVWWLKDRVDRVVAMEGGRVVLEGRPEEV 222 ++ H + + + +RV+ + G + EG P EV Sbjct: 192 MVEHVMRAVMNFAERVIVLHFGEKIAEGTPREV 224 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 68.9 bits (167), Expect = 1e-13 Identities = 58/215 (26%), Positives = 102/215 (47%), Gaps = 14/215 (6%) Query: 22 VWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQP----------TEXXXXXXXXXXXXXP 71 V T+ GE + + G +GSGK+ L ++GL P + Sbjct: 28 VSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTSMSEAELRR 87 Query: 72 FFARRRVGLVFQSAEAQLVR-HTVRDEV-ALGPENLGLPGDEVARRVEGVMGRLGISH-L 128 ++V +VFQ A L +TV ++ + + G+ E +RV ++ +G+ + Sbjct: 88 KVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELLESVGLHRSI 147 Query: 129 AARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLERE-GRG 187 A R+P LSGG+K+RV IA L +EP ++ DEP LD+ +L L+ L E Sbjct: 148 ADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLKKLAWEKNLS 207 Query: 188 WVVISHEVWWLKDRVDRVVAMEGGRVVLEGRPEEV 222 ++I+H++ + + + V+ M GG++ G + V Sbjct: 208 IILITHDLSVIAELAETVMIMYGGKIAEYGPSDAV 242 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 68.6 bits (166), Expect = 1e-13 Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 2/202 (0%) Query: 19 LKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPFFARRRV 78 L+ V L++ GE +L G NG+GKT +R LVGL + F R + Sbjct: 30 LRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLS-RDSGEARVLGVDPWGGGFERVKG 88 Query: 79 GLVFQSAEAQLVRHTVRDEVALGPENLGLPGDEVARRVEGVMGRLGISHL-AARHPRTLS 137 + + +A + E L L +V VE + G+S AR S Sbjct: 89 EVGYLPEDASVYERLTGMENILFYARLYSGWRDVEELVENAVFYSGLSREDLARRAGGYS 148 Query: 138 GGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLEREGRGWVVISHEVWW 197 G KRR+ + L+ +P +VLDEP + +D + + L L REGR +V +H++ Sbjct: 149 KGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSREGRAILVTTHDLAL 208 Query: 198 LKDRVDRVVAMEGGRVVLEGRP 219 ++ DRV + GG V G P Sbjct: 209 AEEIADRVTIIHGGSTVASGPP 230 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 67.4 bits (163), Expect = 3e-13 Identities = 62/236 (26%), Positives = 110/236 (46%), Gaps = 17/236 (7%) Query: 1 MSIVVEGLSHRFPDGSWGLKDVWLTIHEGERVLLVGRNGSGKTLLMR------HLVGLAQ 54 M + V GL+ D LK + G ++G +GSGK+ L+R L+ A+ Sbjct: 4 MDVRVSGLNVWITDKHI-LKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGAR 62 Query: 55 PTEXXXXXXXXXXXXXPFFARRRVGLVFQSAEAQLVRHTVRDEVALGPENLGLPGDEVAR 114 P+ RR G+VFQ T+ + VA+GP+ GL ++ Sbjct: 63 VEGEVWINNMNVMKEDPYNIRRYTGMVFQEPNP-FPHMTIYENVAIGPKLHGLAKNK-KE 120 Query: 115 RVEGVMGRLGISHL-------AARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLD 167 E V L ++HL + +P LSGG+++R+++A L ++P L+LDEP AN+D Sbjct: 121 LDEIVEWALKMAHLWDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANID 180 Query: 168 -LPGIRSVLEALEVLEREGRGWVVISHEVWWLKDRVDRVVAMEGGRVVLEGRPEEV 222 + ++ +E + E ++++H D+++ + GRV+ G +E+ Sbjct: 181 PVSTVKIEQSIVEYAKEEMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKEL 236 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 64.7 bits (156), Expect = 2e-12 Identities = 62/233 (26%), Positives = 99/233 (42%), Gaps = 18/233 (7%) Query: 6 EGLSHRFPDGSWGLKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXX 65 E ++ RF G L +V + + GE + ++G NG+GKT L+ + G+ +P Sbjct: 5 ENITLRF-GGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGR 63 Query: 66 XXXXXPFFARRRVGLVFQSAEAQLVRH-TVRDE--VALGPENLGLPGD------------ 110 R +GL ++L TV + V L P G + Sbjct: 64 DITGLKPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWE 123 Query: 111 -EVARRVEGVMGRLGISHLAARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLP 169 E R E V+ L + L G +++V +AG L P +++DEP A L Sbjct: 124 VEARERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKE 183 Query: 170 GIRSVLEAL-EVLEREGRGWVVISHEVWWLKDRVDRVVAMEGGRVVLEGRPEE 221 ++ A+ E E V+I H++ + D DRVV M+ G+V+ EG P E Sbjct: 184 EKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHE 236 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 63.9 bits (154), Expect = 3e-12 Identities = 61/206 (29%), Positives = 89/206 (43%), Gaps = 8/206 (3%) Query: 22 VWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPFFARRRVGLV 81 V L +++GE V L+G NG+GKT + + GL +P P F R G+ Sbjct: 25 VSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIWQGRDITGLPAFKRVEEGIS 84 Query: 82 F-QSAEAQLVRHTVRDEVALGPENLGLPGDEVARRVEGVMGRLGISHLAARHPR---TLS 137 R TV + + + + +E V I L AR + TLS Sbjct: 85 HVPEGRGIFPRLTVYENLRVAASTRRAK-EHFQDSLEQVYTIFPI--LKARRSQLAGTLS 141 Query: 138 GGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLERE-GRGWVVISHEVW 196 GGE++ +AIA L+ P L++DEP L R V+ L E G +++ V Sbjct: 142 GGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLASRLREELGVTILLVEQNVG 201 Query: 197 WLKDRVDRVVAMEGGRVVLEGRPEEV 222 DR ME GR+VLEG +E+ Sbjct: 202 LSLKVADRGYVMETGRIVLEGASDEL 227 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 63.9 bits (154), Expect = 3e-12 Identities = 69/225 (30%), Positives = 102/225 (45%), Gaps = 9/225 (4%) Query: 1 MSIVVEGLSHRFPDGSWGLKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXX 60 M + VE L+ + +G L V L V ++G NG+GKT ++ ++GL +P Sbjct: 1 MRVRVEDLTVAY-NGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRV 59 Query: 61 XXXXXXXXXXPFFARRRVGLVFQSAEA-QLVRHTVRDEVALGPENLGLPGDEVAR-RVEG 118 P R G V Q+ A +L TVR+ V +L L G AR R Sbjct: 60 FLDGFEATGRPEMVGRYAGYVPQNPSAPKLSPMTVREFVET---SLRLRGVTRARERAVE 116 Query: 119 VMGRLGI-SHLAARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEA 177 V+ LGI + LS G +RV IA + +P LV+DEP A++D G + Sbjct: 117 VLHTLGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARI 176 Query: 178 LEVLEREGRGWVVISHEVWWLKDRVDRVVAMEGGRVVLEGRPEEV 222 + L RE R ++ SH+ L D +V + ++ G PEEV Sbjct: 177 IAGLARE-RLVLMTSHDPSLLLGHTDIIVVINRD-LIASGPPEEV 219 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 61.6 bits (148), Expect = 2e-11 Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 26 IHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPFFARRRVGLVFQSA 85 ++ GE + + G NG GKT +R L G +P E P+ RV Q Sbjct: 380 LYGGEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVY---------PYVEDLRVSYKPQYI 430 Query: 86 EAQLVRHTVRDEV--ALGPENLGLPGDEVARRVEGVMGRLGISHLAARHPRTLSGGEKRR 143 + + ++V A P L PG + + + R+ + L R RTLSGGE ++ Sbjct: 431 SPESLPDATVEQVLKAANPAILA-PGSWLNLEL---VKRMRLDKLLERRVRTLSGGELQK 486 Query: 144 VAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEAL-EVLEREGRGWVVISHEVWWLKDRV 202 VA+A L E +LDEP A LD+ V A+ ++E +V+ H++ L Sbjct: 487 VAVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALVVEHDLMILDYVS 546 Query: 203 DRVVAMEG 210 DR++ + G Sbjct: 547 DRIMLVTG 554 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 61.2 bits (147), Expect = 2e-11 Identities = 58/233 (24%), Positives = 102/233 (43%), Gaps = 14/233 (6%) Query: 1 MSIVVEGLSHRFPDGSWGLKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVG--LAQPTEX 58 M + V+GL+ + + L V + GE ++G NGSGK+ L ++G + + E Sbjct: 1 MGLEVKGLTAKIGE-KVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEG 59 Query: 59 XXXXXXXXXXXXPFFARRRVGLVFQSAEAQLVRHTVRDEVA-------LGPENLGLPGD- 110 P R G+ + + + LG ++L P D Sbjct: 60 DILLDGESIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADP 119 Query: 111 EVARRVEGVMGRLGISHLAARHPRTL--SGGEKRRVAIAGVLVMEPAYLVLDEPFANLDL 168 ++ +R+ +LG+ + SGGEK+R + ++ +P ++LDEP + LD+ Sbjct: 120 KIVKRMYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDI 179 Query: 169 PGIRSVLEALEVLEREGRGWVVISHEVWWLK-DRVDRVVAMEGGRVVLEGRPE 220 G++ V E ++ L GRG ++I+H L DRV + G V+ G E Sbjct: 180 DGLKIVAEFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGSVLARGGAE 232 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 59.7 bits (143), Expect = 6e-11 Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 32/217 (14%) Query: 19 LKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPFFARRRV 78 L+DV L+I G +L G NGSGKT L++ L +P RRV Sbjct: 7 LRDVTLSIPRGVTAIL-GANGSGKTTLLKLAARLLKPDRGSVE------------GPRRV 53 Query: 79 GLVFQSAEAQLVRHTVRDEVALGPENLGLPGDEVARRVEGVMGRLGISHLAARHPRTLSG 138 G Q+ + TV +++A G G+ + ++ G+ + + R P TLS Sbjct: 54 GAALQNPYLGFLGPTVAEDLA---RTAGGRGEALK-----LLREAGLEYASERSPYTLSM 105 Query: 139 GEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLEREGRGWVVISHEVWWL 198 GE R +++ + P +V+DEP + LD G R + ++ R G +V H++ + Sbjct: 106 GEARILSVLMAISWGPEAVVIDEPTSGLDGSGKRWL---ASLIARLGVPVLVAGHDIDFA 162 Query: 199 KDRVDRVVAMEGGRV--------VLEGRPEEVGGRLE 227 V + GRV VL PEE G LE Sbjct: 163 AAVAGWAVILRDGRVRVSGDMERVLRMLPEETGLGLE 199 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 57.4 bits (137), Expect = 3e-10 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 6/149 (4%) Query: 75 RRRVGLVFQSAEAQL-----VRHTVRDEVALGPENLGLPGDEVARRVEGVMGRLGISHLA 129 RR + +V+Q L ++ + D + + +E+ R+ + S Sbjct: 130 RRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNAREREEMVARMLEAVKLTPASDFM 189 Query: 130 ARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLE-ALEVLEREGRGW 188 R+P LSGG+++RVAIA ++ P+ +V DEP + LD+ +LE L E+ G Sbjct: 190 DRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSMLDVSIRAEILELLLGFREKLGTSL 249 Query: 189 VVISHEVWWLKDRVDRVVAMEGGRVVLEG 217 + I+H++ + DR+ M G++V G Sbjct: 250 LFITHDLAVARYICDRIAVMYLGKIVETG 278 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 57.4 bits (137), Expect = 3e-10 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 16/212 (7%) Query: 19 LKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPT---EXXXXXXXXXXXXXPFFAR 75 L V L +++GE + +VG +G GK+ L R + + E R Sbjct: 25 LDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNTVDLVR 84 Query: 76 -----------RRVGLVFQSAEAQLVR-HTVRDEVALGPENLGLPGDEVARRVEGVMGRL 123 + V ++FQ A L H V+ +V +++A+ + + Sbjct: 85 LSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDHVSGEKRRVEKIAQEILKKLMMP 144 Query: 124 GISHLAARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLER 183 + ++P LSGG K+R+ IA L+ P ++ DEP LD+ +L+ L L Sbjct: 145 APHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKMLSRLRE 204 Query: 184 EGRGWVV-ISHEVWWLKDRVDRVVAMEGGRVV 214 E ++ I+H + + DR+ M G VV Sbjct: 205 ELETTIILITHNLAVAAEIADRIAVMYAGHVV 236 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 56.2 bits (134), Expect = 7e-10 Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 24/206 (11%) Query: 24 LTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPFFARRRVGLVFQ 83 L + +GE V + G G+G+ L +VGL +P + P ARRR+GL Sbjct: 275 LEVRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRLGLGVI 334 Query: 84 SAEA---------------QLVRHTVRDEVALGPENLGLPGDEVARRVEGVMGRLGISHL 128 E L HT RD + +E+ R +GI + Sbjct: 335 PEERLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRD-------MGIKAV 387 Query: 129 AARHP-RTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLEREGRG 187 + R LSGG +R+ +A L ++P LV P A LDL G ++V E + + G G Sbjct: 388 SPRQMVDELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRMSSERG-G 446 Query: 188 WVVISHEVWWLKDRVDRVVAMEGGRV 213 +VI ++ +L +++ GG V Sbjct: 447 VLVIDEDLDFLLRVSNKIYVASGGIV 472 Score = 54.7 bits (130), Expect = 2e-09 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 9/223 (4%) Query: 3 IVVEGLSHRFPDGSWGLKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXX 62 + VE L +P G LK V + G L+G NG+GKT L++ ++G+ +P + Sbjct: 5 LAVEDLDVVYPGGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILV 64 Query: 63 XXXXXXXXPFFARRRVGLVFQSAEAQLVRHT-VRDEVALGPENLGLPGDEVARRVEGVM- 120 R G+ S + +++A+ L + G + R M Sbjct: 65 DGYELRPKGPGDSLRSGIYMASQNPPVYPGIKAYEDLAV---TLMVAGRKAGLRQARTML 121 Query: 121 ----GRLGISHLAARHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLE 176 LG++ R+ + E++R+ + L + ++LDEP +L +LE Sbjct: 122 AEASEALGLNIDPDRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLE 181 Query: 177 ALEVLEREGRGWVVISHEVWWLKDRVDRVVAMEGGRVVLEGRP 219 A L G ++++H + + DR+V + G V EG P Sbjct: 182 AAGRLAASGAAVLLVTHRIGEAMEHADRLVILRKGVKVYEGPP 224 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 55.1 bits (131), Expect = 2e-09 Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 8/210 (3%) Query: 19 LKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPFFARR-- 76 +K++ L++ +G L+G NG+GKT L++ + G+ + R Sbjct: 21 IKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNREPD 80 Query: 77 ---RVGLVFQSAEAQLVRHTVRDEVALGPENLGLPGDEVARRVEGVMGRLGISHLAARHP 133 R G+++ ++ + +E + + R V RL Sbjct: 81 EIARRGVIYVMEGRRIFKELTTEENLVSVAYAAGASRDDIRSVLSYFPRL--KERLGEKA 138 Query: 134 RTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLER-EGRGWVVIS 192 LSGGE++ +AIA L+ P L+LDEP L + +++L R EG ++ Sbjct: 139 GNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHREEGLTILLAE 198 Query: 193 HEVWWLKDRVDRVVAMEGGRVVLEGRPEEV 222 + D +E GR+VLEG EE+ Sbjct: 199 QNARKALEISDYGYVIENGRIVLEGSAEEL 228 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 55.1 bits (131), Expect = 2e-09 Identities = 58/175 (33%), Positives = 81/175 (46%), Gaps = 16/175 (9%) Query: 15 GSWGLKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPFFA 74 G W L+ V L + GE V++ G NGSGKT L+R GLA+P+ P Sbjct: 16 GRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSR------GRVSWGCPRGP 69 Query: 75 RRRVGLVFQSAEAQ---LVRHTVRDEVALGPENLG-LPGDEVARRVEGVMGRLGISHLAA 130 R VG V + V V +L +LG P A R+ G + + G SHLA+ Sbjct: 70 RGCVGYVGHTPMVYGDLTVWENVEFFSSLHGGSLGDYPLAAEAWRLLG-LEKYG-SHLAS 127 Query: 131 RHPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLEREG 185 + LS G +RR+ + L+ EP L+LDE F LD ++ L + EG Sbjct: 128 Q----LSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLLRLALGEG 178 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 54.7 bits (130), Expect = 2e-09 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 14/205 (6%) Query: 34 LVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPFFARR--RVGLVFQSAEAQL-V 90 ++G NG+GKT L++ ++GL +P+ P F + R+G V + L Sbjct: 34 VLGPNGAGKTTLLKTILGLVKPS-AGEILVEGVNPRSPGFEKLLPRIGYVPELPVVPLWT 92 Query: 91 RHTVRDEVALGPENLGLPGDEVARRVEGVMGRLGISHLAARHPRTLSGGEKRRVAIAGVL 150 + E E G E R + +G++ LS G ++RV +A Sbjct: 93 TPCILLETLARLE--GYTSVEARVRAREALEVVGLAGECETPIGKLSKGARKRVLVAQAF 150 Query: 151 VMEPAYLVLDEPFANLDLPGIRSVLEALEVLEREGRGWVVISHEVWWLKDRVDRVVAMEG 210 + E LVLDEP++ LD + V E L + REG +V SH + L+D V+ ++ Sbjct: 151 IGERELLVLDEPYSGLDPEWVYRVRELLRTVAREGATVIVSSHILRELEDIATHVLVLKT 210 Query: 211 GRVVLEGRPEEVGGRLETLGIWEGG 235 ++ G +E L W G Sbjct: 211 DQLFY--------GSIEELRAWLSG 227 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 53.5 bits (127), Expect = 5e-09 Identities = 63/231 (27%), Positives = 93/231 (40%), Gaps = 33/231 (14%) Query: 19 LKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPFFARR-- 76 ++DV I GE LVG G GK++ R L L P P RR Sbjct: 29 IEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPP---GRIVEGKIYYYPEPGRRVD 85 Query: 77 ---------------RVGLVFQSAEAQL-VRHTVRDEVALGPENLGLPGD-----EVARR 115 + +FQ A L +T+ +V E + G E RR Sbjct: 86 IMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVG---ETMLAHGRVRSLREGVRR 142 Query: 116 VEGVMGRLGISHLAAR---HPRTLSGGEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIR 172 GV+ + + R +P LSGG K+R I L P L+ DEP LD+ Sbjct: 143 AVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLIADEPTTALDVTIQA 202 Query: 173 SVLEALEVLERE-GRGWVVISHEVWWLKDRVDRVVAMEGGRVVLEGRPEEV 222 +++ L L+RE G ++I+H + + + DRV M G +V E +E+ Sbjct: 203 QIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEEAPVDEL 253 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 49.7 bits (117), Expect = 7e-08 Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 13/199 (6%) Query: 19 LKDVWLTIHEGERVLLVGRNGSGKTLLMRHLVGLAQPTEXXXXXXXXXXXXXPFFARRRV 78 LKDV +T++ G +VG +G+GKT L+R ++G A P + Sbjct: 456 LKDVNITVNPGSVAAVVGASGAGKTTLLRMILGKALGIGGEGYRPDSGVVKIP-TNTKAA 514 Query: 79 GLVFQSAEAQLVRHTVRDEVALGPENLGLPGDEVARRVEGVMGRLGISHLAARHPRTLSG 138 L+ E T+ + VA LG PG A V +G LG + LS Sbjct: 515 ALLPGELEPSFGGETLLEHVA---SKLGDPG--AAVEVLSSVG-LGDAIFFRASFGELST 568 Query: 139 GEKRRVAIAGVLVMEPAYLVLDEPFANLDLPGIRSVLEALEVLEREGRGWVVISHEVWWL 198 G+K R +A +L P LV+DE A+LD R + L L R +++S Sbjct: 569 GQKERAKLASLLAERPNLLVIDEFMAHLDPLTARRIARKLGKLARSKGITLIVS------ 622 Query: 199 KDRVDRVVAMEGGRVVLEG 217 +R + + A++ V+L G Sbjct: 623 TNRPEILDALQPDTVILVG 641 >gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1] Length = 919 Score = 43.1 bits (100), Expect = 6e-06 Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 9/99 (9%) Query: 104 NLGLPGDEVARRVEGVMGRLGISHLAARHP-RTLSGGEKRRVAIAGVLVMEPA------Y 156 NL + G E+ + + I A P +SGGE+ +A++ VL + A + Sbjct: 794 NLDVAGVEIREKAAREIEVKAIGGNGAYRPLEAVSGGERTVLALSFVLALNKAVGGKLGF 853 Query: 157 LVLDEPFANLDLPGIRSVLEALEVLEREG--RGWVVISH 193 L LDEP ANLD RS++E L + EG R VV++H Sbjct: 854 LALDEPTANLDEDRRRSLVEVLRGISVEGLVRQLVVVTH 892 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.142 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 292,860 Number of Sequences: 1700 Number of extensions: 14813 Number of successful extensions: 187 Number of sequences better than 1.0e-04: 41 Number of HSP's better than 0.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 88 Number of HSP's gapped (non-prelim): 60 length of query: 237 length of database: 492,079 effective HSP length: 74 effective length of query: 163 effective length of database: 366,279 effective search space: 59703477 effective search space used: 59703477 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719130|ref|YP_003874662.1| hypothetical protein STHERM_c14490 [Spirochaeta thermophila DSM 6192] (304 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.137 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 154,444 Number of Sequences: 1700 Number of extensions: 4334 Number of successful extensions: 7 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 304 length of database: 492,079 effective HSP length: 76 effective length of query: 228 effective length of database: 362,879 effective search space: 82736412 effective search space used: 82736412 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719131|ref|YP_003874663.1| zinc-transporting ATPase [Spirochaeta thermophila DSM 6192] (662 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431463|ref|NP_147955.2| cation-transporting ATPase [Aeropy... 224 5e-60 gi|118431927|ref|NP_148699.2| cation-transporting P-type ATPase ... 189 1e-49 >gi|118431463|ref|NP_147955.2| cation-transporting ATPase [Aeropyrum pernix K1] Length = 838 Score = 224 bits (571), Expect = 5e-60 Identities = 153/476 (32%), Positives = 229/476 (48%), Gaps = 12/476 (2%) Query: 130 LGEALQDRAVRRARDSITALLSVMPDRAHLVEGGSVREVRPEEVRPGQVVLVRPGERIPV 189 +G ++ + + ++ L + P +A ++ G EV EV+PG +V+VR GERIPV Sbjct: 267 IGRYIESKVKKGTGKAVENLAKLKPQKARVLRGRREVEVDVSEVKPGDLVVVRQGERIPV 326 Query: 190 DGVVRKGRTDLSLAVLTGESLPVAVEEGDEVQAGALNLTGVVEVEAVHPYAESSIVRIRR 249 DG V +G+ + +V TGE +PV + GD V AG++ +G + + A +++I RI R Sbjct: 327 DGYVVQGKAYVDESVFTGEPIPVEKKPGDLVLAGSMVSSGWLHISATRTSGDTAIDRIAR 386 Query: 250 LVEEARERKGRVERFFTRFARVYTPXXXXXXXXXXXXXXXXXXXXXXRWGYRALVLLVIS 309 L+ ++ K ++R R + ++ RA + +IS Sbjct: 387 LIAYSQAGKMDIQRLADRVSGMFFWAVLCIASLTFTAWLFLGGLETAI--IRAASVFLIS 444 Query: 310 CPCALVVGIPLVYMNAMGVAAARGVLFKGGAVMDALARVSTVVFDKTGTLTRGVFALKEV 369 CPCAL + P +GVAA G+L + + LA+ S VVFDKTGTLT G+ + V Sbjct: 445 CPCALGLATPTASSAGVGVAARAGILVRNVVAFERLAKASIVVFDKTGTLTLGMPRVAAV 504 Query: 370 EPAEGVRGDEVLEWXXXXXXXXXXXXXXXXXSAYXXXXXXXXXXXXXXXXVPGRGVVAEV 429 E +G E+LE AY PG GV AEV Sbjct: 505 EAVDGYSEKEILELAASAEKWSEHPLARAIIDAYMEVAGRGPEDPDNAEVFPGMGVYAEV 564 Query: 430 LGRRVVAGSDRLLHD--------EGIPHERCVRDGGVVEVAVDGRYVGRVRVEDAVREDA 481 GR VV G+ +++ E I E R V VA+DG+ G + + D R +A Sbjct: 565 GGRSVVVGNRKIMDGFEVDIKTLEKIAEEWQSRGATTVFVAIDGKPAGVIAIRDEPRPEA 624 Query: 482 KXXXXXXXXXXXXXXXXXTGDTEEAVQEVAGDLCIREWKAGLFPEDKVREVARLVEQAEG 541 + TGD+E + +A +L I E++AG+ PE K + L ++ Sbjct: 625 R-ETVDWLEKLGLKVMMLTGDSEGTARAIARELDIEEYRAGVSPEGKAEVIRELQKKGHV 683 Query: 542 VVFVGDGVNDAAVLARADVGIAMGAGGTQAASESADVVLMEDSLHGVVEAVRLARK 597 VV VGDGVNDA LARADVGIA+ A T + E+ D+VL++ L V AV ++RK Sbjct: 684 VVMVGDGVNDAPSLARADVGIAV-ANATDVSVEAGDIVLIKGDLRRVPLAVVISRK 738 >gi|118431927|ref|NP_148699.2| cation-transporting P-type ATPase [Aeropyrum pernix K1] Length = 585 Score = 189 bits (481), Expect = 1e-49 Identities = 164/565 (29%), Positives = 243/565 (43%), Gaps = 30/565 (5%) Query: 88 SAVRSLVRGGVLDEFVLMSVXXXXXXXXXXXXXXXXXXXXYQLGEALQDRAVRRARDSIT 147 +AVR LV L +LM++ Y E L+ + + A + Sbjct: 36 AAVRELVLERRLTVELLMAIVGFILAYHGIVFEGLIIMLLYSFAETLEAQVEKLALRRLE 95 Query: 148 ALLSVMPDRAHLVEGGSVREVRPEEVRPGQVVLVRPGERIPVDGV-VRKGRTDLSLAVLT 206 ++P R +V GS+ EV +V+PG VVLVR GE +PVDGV + G DL L +T Sbjct: 96 EAKRLIPKRVRVVRDGSIEEVDASQVKPGDVVLVRKGEAVPVDGVLLDTGVFDLRL--IT 153 Query: 207 GESLPVAVEEGDEVQAGALNLTGVVEVEAVHPYAESSIVRIRRLVEEARERKGRVERFFT 266 GES PV VE G +++GA+N+ V+V+AV ES+I RI E KG +R Sbjct: 154 GESEPVTVEGGRAIESGAINVGQPVKVKAVKSPLESTIQRIVSSALELLREKGATQRLID 213 Query: 267 RFARVYTPXXXXXXXXXXXXXXXXXXXXXXRWGYRALVLLVISCPCALVVGIPLVYMNAM 326 R A +++VLL+ CP A ++ ++ Sbjct: 214 RLAPYMIVIVIGAFIAAYITLGPE----------KSVVLLLAGCPSAFIIASSAATSYSI 263 Query: 327 GVAAARGVLFKGGAVMDALARVSTVVFDKTGTLTRGVFALKEVEPAEGVRGDEVLEWXXX 386 A RG++ +GG ++A ++ VV DKTGT+T G V G + L Sbjct: 264 ATLATRGIVARGGRSLEAAGKIKAVVLDKTGTITMGTLKPSRVVVLRGAASQDGL----L 319 Query: 387 XXXXXXXXXXXXXXSAYXXXXXXXXXXXXXXXXVPGRGVVAEVLGRRVVAGSDRLLHDE- 445 S VPGRG+ A V GR ++ GS+R L +E Sbjct: 320 NLVAAAASTSLHPLSIAIARRWRPMGNVEKVEEVPGRGLRAVVSGRTLLLGSERFLEEEV 379 Query: 446 GIPHERCVRDGGVVEVAVDGRYVGRVRVEDAVREDAKXXXXXXXXXXXXXXXXXTGDTEE 505 G E D V VDG + + + + V E K +GD Sbjct: 380 GYRPENPCVDEVPVFAHVDGTTLA-ICMSEEVDEKTK-AAINEMKRMGLNLVLASGDRRN 437 Query: 506 AVQEVAGDLCIREWKAGLFPEDKVREVARLVEQAEGVVFVGDGVNDAAVLARADVGIAMG 565 V+++A +L I E+ A L PEDK+ V+++ E+ + V +GDGVND LA +D+G+A+ Sbjct: 438 KVEKIARELGIDEYHAELKPEDKLEIVSKVREKYDPVSMIGDGVNDLEALAASDLGVAV- 496 Query: 566 AGGTQAASESADVVLMEDSLHGVVEAVRLARKAR---VVLWENVVLIXXXXXXXXXXXXX 622 G A AD VL ++GV +A RL R R L +V Sbjct: 497 -GNIDAVRNLADAVL----VNGVADAPRLYRMGRSYLAGLKAGLVAATIVKLAVIILGIG 551 Query: 623 XXXXXW-EAVIGDVGTTLLAVLNAV 646 W A++GD G+T++ + AV Sbjct: 552 GSIPLWLVALLGDDGSTIIGSVAAV 576 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 614,866 Number of Sequences: 1700 Number of extensions: 25463 Number of successful extensions: 128 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115 Number of HSP's gapped (non-prelim): 4 length of query: 662 length of database: 492,079 effective HSP length: 83 effective length of query: 579 effective length of database: 350,979 effective search space: 203216841 effective search space used: 203216841 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719132|ref|YP_003874664.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (100 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,766 Number of Sequences: 1700 Number of extensions: 3207 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 100 length of database: 492,079 effective HSP length: 64 effective length of query: 36 effective length of database: 383,279 effective search space: 13798044 effective search space used: 13798044 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719133|ref|YP_003874665.1| endo-1-4-beta glucanase, glycosyl hydrolase family 5 [Spirochaeta thermophila DSM 6192] (331 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.134 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 320,286 Number of Sequences: 1700 Number of extensions: 13724 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 0 length of query: 331 length of database: 492,079 effective HSP length: 77 effective length of query: 254 effective length of database: 361,179 effective search space: 91739466 effective search space used: 91739466 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719134|ref|YP_003874666.1| sialate O-acetylesterase [Spirochaeta thermophila DSM 6192] (512 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 566,508 Number of Sequences: 1700 Number of extensions: 26747 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 512 length of database: 492,079 effective HSP length: 81 effective length of query: 431 effective length of database: 354,379 effective search space: 152737349 effective search space used: 152737349 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719135|ref|YP_003874667.1| Trk system potassium uptake protein TrkA [Spirochaeta thermophila DSM 6192] (464 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602214|ref|NP_148621.1| Trk system potassium uptake protein... 55 4e-09 >gi|14602214|ref|NP_148621.1| Trk system potassium uptake protein TrkA [Aeropyrum pernix K1] Length = 220 Score = 55.1 bits (131), Expect = 4e-09 Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 4/125 (3%) Query: 1 MKIIIHGAGRVGFQLARTLIQEGHAITIIEQDPALARHAANLLDCFVLNEPGNQIETLRK 60 M+I+I GAGRVG +LA+ L Q G+++TI+++D A + D L + Sbjct: 1 MRILIVGAGRVGRELAKRLSQAGYSVTIVDKDGEKLEIAQSEADVEGLQIDVTDPRFYSE 60 Query: 61 AEVDKADYFVSVTDSDEINIISCGLAKSVFHTPKTIARVRKFDYSASEVLETPLFGIDII 120 ++ D V+ TD DE+N+ +A + + K RVR + + T L D+I Sbjct: 61 IDIPSYDVLVAATDKDEVNLFLVAMAMA-YGMEKIYVRVR---MKETVRILTTLGVYDMI 116 Query: 121 INPEI 125 + P+I Sbjct: 117 VEPDI 121 Score = 47.4 bits (111), Expect = 8e-07 Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 39/243 (16%) Query: 231 KIVLVGGGELGCYILDMLNARREEGGFFRHLFRRIFTPHRYQFHIIDQDYDRCKYLAHRY 290 +I++VG G +G R L +R+ + Y I+D+D ++ + +A Sbjct: 2 RILIVGAGRVG-----------------RELAKRL-SQAGYSVTIVDKDGEKLE-IAQSE 42 Query: 291 PDATVSNVDISQEGFMEEGNLEGYDVVITATQSQELNLLTALYAKKVGVRKSIAVVHRIP 350 D +D++ F E ++ YDV++ AT E+NL A G+ K V Sbjct: 43 ADVEGLQIDVTDPRFYSEIDIPSYDVLVAATDKDEVNLFLVAMAMAYGMEKIYVRVRMKE 102 Query: 351 FMHLGEQLGL-------DVTVSLNHAVLTTILKAIYQEKVHTIYPISGSPYELVETVILP 403 + + LG+ D+ L ++ +T K + V Y + + Sbjct: 103 TVRILTTLGVYDMIVEPDIIAGLLYSGITGKGKPVLLSDVFV------GRYVVAAATVTK 156 Query: 404 TSPFIGKKIKEL----GLPGETLILLITRKEEQIIPTGDTELREGDKLVLIFNQTHRQKV 459 SP G++++++ L G +L + E P + EG ++ + + R+ + Sbjct: 157 QSPVRGQRLRDVLRSRDLEGRVKVLAVFDGNEIREPEEVVTIEEGHTIIALVD---REYL 213 Query: 460 EEF 462 EEF Sbjct: 214 EEF 216 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 455,689 Number of Sequences: 1700 Number of extensions: 20172 Number of successful extensions: 72 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 2 length of query: 464 length of database: 492,079 effective HSP length: 80 effective length of query: 384 effective length of database: 356,079 effective search space: 136734336 effective search space used: 136734336 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719136|ref|YP_003874668.1| hypothetical protein STHERM_c14550 [Spirochaeta thermophila DSM 6192] (481 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431165|ref|NP_147437.2| Trk system potassium uptake protei... 115 2e-27 >gi|118431165|ref|NP_147437.2| Trk system potassium uptake protein TrkH [Aeropyrum pernix K1] Length = 503 Score = 115 bits (289), Expect = 2e-27 Identities = 109/420 (25%), Positives = 175/420 (41%), Gaps = 29/420 (6%) Query: 73 LFVTLS-WISAAGFGALPFTLSGSIPSYTDAFFETMSGFTTTGASILT-----------E 120 +F+T++ W+S F A + IP Y DA ET++G+TTTG SILT Sbjct: 81 VFITVATWLSVPLFSAALMSEILDIP-YVDALLETVAGWTTTGLSILTGAESSSGGYVPS 139 Query: 121 IEGLPRSILFWRSLTHWLGGMGIXXXXXXXXXXXXXXXXXXFKAESPGPTLEKVTPTIAQ 180 ++ +P S+ WRS+ W+GG+GI + AE E++ ++ Sbjct: 140 VDEIPESVKLWRSMLQWVGGVGIVVFTVAFLARPGISAAALYIAEG---RFERLEASLKA 196 Query: 181 TAKVLWKIYVGFTAAETVLLMLGGMDLFDALTHTFGTLATGGFSPRNQSVGAYRSAYVDV 240 +A + +Y+ +T +++ L GM L DA+ H+ ++T GFS SVG Y+ Y Sbjct: 197 SAIRMTLVYMVYTLLGALIIYLSGMSLSDAIQHSMTAISTAGFSTHADSVGFYKGDYAVY 256 Query: 241 VITVFMLMAG-FNFGLYHRVWSGKGRDILRNTEARAYAGIFAVSTLAVA--FAVRPLYGS 297 T+ + G +F + + +LR+ E R AG+ A+S A A + + P+ S Sbjct: 257 ASTLLVSFLGALSFVDLDNIMRLRLGRVLRSVEFRVIAGLTALSAAAAAAVWYIDPVMRS 316 Query: 298 LLNALRYAGFQVASXXXXXXXXXXXXXXWPAFAKGVLFFLMFVXXXXXXXXXXIKVIRLV 357 V+ ++ K ++ L + IKV+RL Sbjct: 317 SYTLADTIYNSVSGYITVGFSTASLEGASDSY-KLLIAALGLIGGSAFSTAGGIKVLRLA 375 Query: 358 TLAKQAVVELKYLLFPYG-VFRPRVNGEPVRKDFLMSISGFF--FLYIAILLAVTLV-VT 413 K VE +L P V + + G + +D + F + ILL +T V + Sbjct: 376 IALKTLDVETTRILKPSSYVPKNLIGGRRLTEDMVKRSLAVIIAFATVEILLGLTAVALY 435 Query: 414 SGGYDLTTSFSSALVTLGNIGPGFAKIGPTQNYAFLPAYIKWVLSVAMLLGRLELYTVLV 473 S Y L NIG P P +K +L MLLGRLE+ +V Sbjct: 436 SDIYPTVDIIFDVTSALANIGLSTGVTSPE-----APTGLKVILIAGMLLGRLEILPYIV 490 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.142 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 408,481 Number of Sequences: 1700 Number of extensions: 16253 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 1 length of query: 481 length of database: 492,079 effective HSP length: 80 effective length of query: 401 effective length of database: 356,079 effective search space: 142787679 effective search space used: 142787679 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719137|ref|YP_003874669.1| dihydroxy-acid dehydratase [Spirochaeta thermophila DSM 6192] (616 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430841|ref|NP_146903.2| dihydroxy-acid dehydratase [Aeropy... 340 5e-95 >gi|118430841|ref|NP_146903.2| dihydroxy-acid dehydratase [Aeropyrum pernix K1] Length = 553 Score = 340 bits (873), Expect = 5e-95 Identities = 225/602 (37%), Positives = 318/602 (52%), Gaps = 59/602 (9%) Query: 10 RSSITTSGRLMAGARSLWRAAGMKEEMIGKPVIAIANSFTQFVPGHTHLHEIGQYVKKII 69 RS + G R RA G + KP+IA+ ++++ P + ++ VK+ + Sbjct: 5 RSRLWYDGLENTPHRVYLRAIGFTSDDFQKPLIAVVAAWSEAGPCNFNVLPGSLRVKEGV 64 Query: 70 ESRGFFAAEFNTIAIDDGIAMGHDGMLYSLPSRDLIADSVEYMVNAHKADALVCISNCDK 129 S G TI ++DGI MG GM YSL SR+LIAD++E V +H D V I CDK Sbjct: 65 RSAGGVPLAVPTIVVNDGINMGTPGMRYSLISRELIADTIEAQVASHGFDGWVGIGGCDK 124 Query: 130 ITPGMLIAAMRLNIPTIFVSGGPMEAGTLDGKKYDL---VDAMVLAADEEVSDEEISTIE 186 PG+++A RL++P+I++ GG E G LDG+ + +A+ + +E + IE Sbjct: 125 TQPGIMMAMARLDLPSIYIYGGTAEHGVLDGETVTVQSAFEAVGAYLKGLIDEERLYEIE 184 Query: 187 RIACPTCGSCSGMFTANSMNCLNEALGLALPGNGTVVATHKNRIRLFEQAAHRICDLVEE 246 + A PT G+C G+FTAN+M L EALGL+ G+ + AT R R +A LVE Sbjct: 185 KAAMPTPGTCQGLFTANTMAILAEALGLSPLGSASPPATSSERARELARAGALAVGLVET 244 Query: 247 YYYEGDDRHLPRSIATREAFMNAMALDIAMGGSTNTVLHILAIAREAGVAFTLEDIDGLS 306 PR I T EAF NA+ +A+ GSTN VLH+LAIAREAGV L+D D S Sbjct: 245 GL-------TPRRILTYEAFYNAIVTLMAISGSTNAVLHLLAIAREAGVKLALDDFDEAS 297 Query: 307 RRIPCICKVAPSSEYHVEDVNRAGGILGIMGELERAGLLHTEVYRVDGLTLGEAIARYDI 366 R++P I +AP+ +Y + D++ GG I+ +L GLL+ E V+G+ +G+ +++++ Sbjct: 298 RKVPVIAALAPAGKYTMVDLHNVGGAPVILRKLLDRGLLYGEAVTVEGVEIGKLLSKWEP 357 Query: 367 RRPTATEEARRLYASAPAGRPSLTMGSQESYFKELDLDREKGCIRDVEHAYYPDGGLAVL 426 R + + D + Y P GL +L Sbjct: 358 R-------------------------------------TDYNILYDFDKPYKPHAGLRIL 380 Query: 427 YGNIARRGCVVKTAGVDPSIFHFKGPAKVFESQEEACEGILDPERVKAGDVVVIRYEGPK 486 G++A RG V+K I FKG AKVF+S+EEA + I + V+ GDVVV+RY GPK Sbjct: 381 RGSLAPRGAVMKIGA--SGILKFKGAAKVFDSEEEAFKAI-ERGYVEEGDVVVVRYVGPK 437 Query: 487 GGPGMQEMLYPTSYLKARHLGKECALITDGRFSGGTSGLSIGHVSPEAAEGGEIALLRDG 546 G PGM EML T+ + LG++ ALITDGRFSG T G+ +GH +PEAA GG IAL+ +G Sbjct: 438 GAPGMPEMLKITAAIVGAGLGEKVALITDGRFSGATRGVMVGHAAPEAAVGGPIALVENG 497 Query: 547 DVIEIDIPNRRINVLLSDXXXXXXXXXXXXXXXPYTPRTRNRPVSKALRAYALLATSADT 606 D I ID ++VLL ++P P LR YA L T AD Sbjct: 498 DEIVIDGEKGTLDVLLG-------GDELARRRDKWSPPP--LPKQGLLRKYAKLVTQADE 548 Query: 607 GA 608 GA Sbjct: 549 GA 550 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 639,246 Number of Sequences: 1700 Number of extensions: 29603 Number of successful extensions: 97 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88 Number of HSP's gapped (non-prelim): 3 length of query: 616 length of database: 492,079 effective HSP length: 82 effective length of query: 534 effective length of database: 352,679 effective search space: 188330586 effective search space used: 188330586 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719138|ref|YP_003874670.1| hypothetical protein STHERM_c14570 [Spirochaeta thermophila DSM 6192] (127 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431308|ref|NP_147677.2| cytidine deaminase [Aeropyrum pern... 44 1e-06 >gi|118431308|ref|NP_147677.2| cytidine deaminase [Aeropyrum pernix K1] Length = 136 Score = 44.3 bits (103), Expect = 1e-06 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 9/97 (9%) Query: 2 DEVASLIEEARKYLGAFRLSREWMSAGGVAAAIRTASGRIYTGISID-VSCGIGFCAEHA 60 D V + +E+A + + R V AA+RT+ GR+Y G +++ S G+ CAE Sbjct: 8 DLVGAAVEQAGRAYAPYSRFR-------VGAAVRTSDGRVYGGCNVENSSYGLTVCAERT 60 Query: 61 AIAEMLKHRETR-IEMVAAITEGGHIIPPCGRCREFM 96 A+ + + +E+ + +PPCG C + + Sbjct: 61 AVFKAVSEGSRGVVEVAVYAADSDEPVPPCGACLQVL 97 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.138 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 111,175 Number of Sequences: 1700 Number of extensions: 4001 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 1 length of query: 127 length of database: 492,079 effective HSP length: 67 effective length of query: 60 effective length of database: 378,179 effective search space: 22690740 effective search space used: 22690740 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719139|ref|YP_003874671.1| hypothetical protein STHERM_c14580 [Spirochaeta thermophila DSM 6192] (252 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 266,953 Number of Sequences: 1700 Number of extensions: 11328 Number of successful extensions: 27 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 0 length of query: 252 length of database: 492,079 effective HSP length: 75 effective length of query: 177 effective length of database: 364,579 effective search space: 64530483 effective search space used: 64530483 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719140|ref|YP_003874672.1| hypothetical protein STHERM_c14590 [Spirochaeta thermophila DSM 6192] (93 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.132 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,369 Number of Sequences: 1700 Number of extensions: 599 Number of successful extensions: 0 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 93 length of database: 492,079 effective HSP length: 61 effective length of query: 32 effective length of database: 388,379 effective search space: 12428128 effective search space used: 12428128 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719141|ref|YP_003874673.1| glycoside hydrolase, family 3 domain-containing protein [Spirochaeta thermophila DSM 6192] (762 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 837,533 Number of Sequences: 1700 Number of extensions: 41459 Number of successful extensions: 135 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 135 Number of HSP's gapped (non-prelim): 0 length of query: 762 length of database: 492,079 effective HSP length: 84 effective length of query: 678 effective length of database: 349,279 effective search space: 236811162 effective search space used: 236811162 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719142|ref|YP_003874674.1| hypothetical protein STHERM_c14610 [Spirochaeta thermophila DSM 6192] (313 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.143 0.461 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 405,257 Number of Sequences: 1700 Number of extensions: 21596 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 0 length of query: 313 length of database: 492,079 effective HSP length: 77 effective length of query: 236 effective length of database: 361,179 effective search space: 85238244 effective search space used: 85238244 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719143|ref|YP_003874675.1| glycosyl hydrolase [Spirochaeta thermophila DSM 6192] (560 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 607,658 Number of Sequences: 1700 Number of extensions: 28244 Number of successful extensions: 86 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86 Number of HSP's gapped (non-prelim): 0 length of query: 560 length of database: 492,079 effective HSP length: 82 effective length of query: 478 effective length of database: 352,679 effective search space: 168580562 effective search space used: 168580562 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719144|ref|YP_003874676.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (320 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 300,697 Number of Sequences: 1700 Number of extensions: 12235 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 0 length of query: 320 length of database: 492,079 effective HSP length: 77 effective length of query: 243 effective length of database: 361,179 effective search space: 87766497 effective search space used: 87766497 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719145|ref|YP_003874677.1| hypothetical protein STHERM_c14640 [Spirochaeta thermophila DSM 6192] (397 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600879|ref|NP_147404.1| MFS transporter [Aeropyrum pernix K1] 53 1e-08 >gi|14600879|ref|NP_147404.1| MFS transporter [Aeropyrum pernix K1] Length = 383 Score = 52.8 bits (125), Expect = 1e-08 Identities = 83/337 (24%), Positives = 127/337 (37%), Gaps = 16/337 (4%) Query: 35 LPLYFQTQGAPKTVAGLSTTLFAIAALLARPLGGVLFDRYDRTLVFHLGVGTLIGATSLM 94 LPL+ + G P T L T + +A LA PL G+L D R G ++ ATS + Sbjct: 30 LPLHVRELGWPYTYITLIATWYFVAVTLATPLVGLLSDLTRRPGYILAGGMAVVAATS-V 88 Query: 95 ALP--AGIPYLLTCRLLQGVGFSL-FTTGMGVL-LPDFVPQGRVLQAIAIQGLVASLGPA 150 A+P P L+ R LQG+G ++ +G L L V +G V + GL S G Sbjct: 89 AIPHVENPPLLMALRALQGLGLAVGLPIALGSLSLIQGVRRG-VASTVIASGLGMSGGAF 147 Query: 151 LGGPLAVQLLPAGFELVVVTSTLIGIAGMALAVPTFPRTPSSRDGEGSASSQDLPHRLWS 210 L G L V+ L GF + + + +A+ P P S A+ + +P W Sbjct: 148 LSG-LMVEYL--GFPALFYAAAVPAALSTLVALGWRPPPPPSGSPGLLAALRSMP---WE 201 Query: 211 RLFHKEALA-PXXXXXXXXXXXXXXXTFIPGYALTRGIPNGGLFFTSFTLAVVLTRLFFG 269 L +A I G + T G + + + +T +F Sbjct: 202 VLVVMAGIAVRNTFASGVFSVVSIIFNKIVGISYT---ATGVVLAINPAVQASVTTVFER 258 Query: 270 KVQGDLSLLTSGSFIVSGISFLLLIPLSGYLHLLVSGFLYGAGYGVAFPILNTGALMXXX 329 ++G LL S + ++F L + L L + GA YG NT + Sbjct: 259 IMRGRALLLYSTGLSGTALAFYLYLTAGSALDLAAAQIALGAFYGATVVSGNTMIIALAP 318 Query: 330 XXXXXXXXXTFFTAMDAGVATGSLAAGGIAQMCGFPA 366 + A + G G+ AG + G A Sbjct: 319 SEIRYTASSLYTFAFNIGWILGTSIAGKVMDAAGVDA 355 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.143 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 371,825 Number of Sequences: 1700 Number of extensions: 16729 Number of successful extensions: 83 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 82 Number of HSP's gapped (non-prelim): 2 length of query: 397 length of database: 492,079 effective HSP length: 79 effective length of query: 318 effective length of database: 357,779 effective search space: 113773722 effective search space used: 113773722 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719146|ref|YP_003874678.1| transporter [Spirochaeta thermophila DSM 6192] (267 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 199 8e-53 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 186 4e-49 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 181 1e-47 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 171 2e-44 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 156 5e-40 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 153 4e-39 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 152 1e-38 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 132 1e-32 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 122 9e-30 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 112 7e-27 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 109 6e-26 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 108 1e-25 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 107 4e-25 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 105 9e-25 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 105 2e-24 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 100 4e-23 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 94 3e-21 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 92 2e-20 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 92 2e-20 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 91 2e-20 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 90 5e-20 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 87 4e-19 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 84 3e-18 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 82 2e-17 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 80 4e-17 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 80 5e-17 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 78 3e-16 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 77 6e-16 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 72 1e-14 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 71 3e-14 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 69 9e-14 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 69 1e-13 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 65 2e-12 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 65 2e-12 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 63 7e-12 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 62 2e-11 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 62 2e-11 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 58 3e-10 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 50 6e-08 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 43 7e-06 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 199 bits (505), Expect = 8e-53 Identities = 102/234 (43%), Positives = 146/234 (62%) Query: 27 AVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGEVLRLRGQRERRA 86 AVD V++G REGE+++IVGESG GKTTL K +G+ PS G + YRGE+L R Sbjct: 37 AVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARDRR 96 Query: 87 YWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKEEACSFVNLPYHEI 146 ++Q +FQDP+ S + V + + L + G+ E+ RR E + P E Sbjct: 97 LRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETVGLTPGREF 156 Query: 147 YNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLRKERGTT 206 Y + P +LSGGQ QR+ IAR +++P V++ADEP SMID R++ILD+++ + G T Sbjct: 157 YWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTGAT 216 Query: 207 IVFITHDLGLAYYVSDRIAIMHRGKICEEGDAKRVIEAPRHEYTKSLLADVPRL 260 IV ITHD+ +A V+DRIA+M+ GKI E G+ + VIE PRH YT +L+ P + Sbjct: 217 IVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVIENPRHPYTAALVTSTPSI 270 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 186 bits (473), Expect = 4e-49 Identities = 101/257 (39%), Positives = 151/257 (58%), Gaps = 20/257 (7%) Query: 22 RRRFAAVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRG-----EVL 76 +R AVD V+ GE+ +VGESG GKTT K L L++ + G V ++ E L Sbjct: 44 QRFVKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEEL 103 Query: 77 RLRG---------------QRERRAYWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGI 121 RG +R+ + E+Q ++QDP+ S N F + R L+D L + I Sbjct: 104 ERRGVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSI 163 Query: 122 QASEQEARRIKEEACSFVNLPYHEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPT 181 + + + + P + ++YP +LSGGQ QR+ IAR FI+ P +++ADEP Sbjct: 164 GNAREREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPV 223 Query: 182 SMIDACSRSTILDMLLSLRKERGTTIVFITHDLGLAYYVSDRIAIMHRGKICEEGDAKRV 241 SM+D R+ IL++LL R++ GT+++FITHDL +A Y+ DRIA+M+ GKI E GDA+R+ Sbjct: 224 SMLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDARRI 283 Query: 242 IEAPRHEYTKSLLADVP 258 IE P H YTK+L+A +P Sbjct: 284 IERPIHPYTKALVAAIP 300 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 181 bits (460), Expect = 1e-47 Identities = 106/265 (40%), Positives = 157/265 (59%), Gaps = 16/265 (6%) Query: 3 MGNEYVLEGVDLTRYFGIGRRRFA-----AVDHVNIGFREGEIVSIVGESGSGKTTLAKI 57 +G E ++E V L +YF + F AVD+V IG G+ + +VGESGSGKTT ++ Sbjct: 22 LGRELLVETVGLKKYFPVKSLFFTRAYVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRV 81 Query: 58 FLGLLRPSSGEVRYRG-EVLRLRGQRERRAYWSEVQAIFQDPFASFNQFFRVDRFLQDCL 116 L L P+ G + + G +V++LRG R + + Q IFQDP+ S N + + + + Sbjct: 82 ILRLEEPTGGRIFFDGIDVMKLRG-RGLKEFRRRAQIIFQDPYGSLNPRKTIFNLIAEPI 140 Query: 117 KVAGIQASEQEARRIKEEACSF---VNLPYHEIYNKYPFELSGGQMQRLMIARVFIIKPR 173 KV GI+ + ++E S V L +Y +YP E SGGQ QR+ IARV +KP Sbjct: 141 KVHGIKVGD-----LQEYIVSLLYQVGLNETHLY-RYPHEFSGGQRQRIAIARVLALKPE 194 Query: 174 VLIADEPTSMIDACSRSTILDMLLSLRKERGTTIVFITHDLGLAYYVSDRIAIMHRGKIC 233 ++ DEPTS +D ++ IL++L L+++ T +FI+HDLG+ Y+SD IA+M+ GKI Sbjct: 195 FIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIV 254 Query: 234 EEGDAKRVIEAPRHEYTKSLLADVP 258 E G+A+ V E P H YTK LL +P Sbjct: 255 EFGEAEEVFEKPLHPYTKVLLESIP 279 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 171 bits (432), Expect = 2e-44 Identities = 95/237 (40%), Positives = 145/237 (61%), Gaps = 6/237 (2%) Query: 27 AVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSS----GEVRYRG-EVLRLRGQ 81 AVD V++ +GE +SIVGESGSGK+TLA L+ P G + Y G ++L L G+ Sbjct: 22 AVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRILYSGVDLLSLAGE 81 Query: 82 RERRAYWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKEEACSFVNL 141 RR E+ +FQDP A + + V + + L G+ +S EA + +A V + Sbjct: 82 ELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLASSGSEAESMAGDALELVGI 141 Query: 142 PYHEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLRK 201 P + + YP +LSGGQ QR+ IA ++P++LIADEPT+ +D ++ I+D++ L++ Sbjct: 142 P-RDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKIMDLMKKLQE 200 Query: 202 ERGTTIVFITHDLGLAYYVSDRIAIMHRGKICEEGDAKRVIEAPRHEYTKSLLADVP 258 ERG T++ +THD+GLA SDRIA+M+ G++ E G A+ V+ P H YT+ L+ VP Sbjct: 201 ERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDVVSNPIHPYTEMLIKSVP 257 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 156 bits (395), Expect = 5e-40 Identities = 96/267 (35%), Positives = 143/267 (53%), Gaps = 36/267 (13%) Query: 27 AVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRY---RGEVLRL----- 78 AVD V++ ++GEI+ +VGESGSGKTTLAK +GL RP +G V +GE+ Sbjct: 29 AVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELEEAVSIYE 88 Query: 79 ---RGQRERRA------------------------YWSEVQAIFQDPFASFNQFFRVDRF 111 RG+ +R + +VQ + QDP++S N +V Sbjct: 89 ALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMKVGEI 148 Query: 112 LQDCLKVAGIQASEQEARRIKEEACSFVNLPYHEIYNKYPFELSGGQMQRLMIARVFIIK 171 + + ++V GI+ S + +R E V L E ++YP+ELSGGQ QR+ IAR + Sbjct: 149 IGEPVRVHGIEKSSEGVKRRVIEVLEAVGLG-KEFADRYPYELSGGQRQRVAIARALALN 207 Query: 172 PRVLIADEPTSMIDACSRSTILDMLLSLRKERGTTIVFITHDLGLAYYVSDRIAIMHRGK 231 P++L+ DEPTS +D ++ IL +L L K+ G T + ITHD+ + Y+S + +M+ GK Sbjct: 208 PKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMYSGK 267 Query: 232 ICEEGDAKRVIEAPRHEYTKSLLADVP 258 I E + P H YTK LL+ VP Sbjct: 268 IMESAPKHILFTNPLHPYTKLLLSAVP 294 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 153 bits (387), Expect = 4e-39 Identities = 100/275 (36%), Positives = 149/275 (54%), Gaps = 18/275 (6%) Query: 5 NEYVLEGVDLTRYFGIGRRRFAAVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRP 64 +E VL DLT + + A+D V + +GEI++IVGESG GK+TLA+ +L P Sbjct: 2 SEIVLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARIL-P 60 Query: 65 SSGEVRYRGEVLRL-RGQRERRAYWSE----------VQAIFQDPFASFNQFFRVDRFLQ 113 S+ + +L L G SE V IFQDP A+ + +V + + Sbjct: 61 SNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVT 120 Query: 114 DCLKVAGIQASEQEARRIKEEACSFVNLPY-HEIYNKYPFELSGGQMQRLMIARVFIIKP 172 D + ++ +I +E + +P H I KYP ELSGG QR++IA I +P Sbjct: 121 D-----HVSGEKRRVEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRP 175 Query: 173 RVLIADEPTSMIDACSRSTILDMLLSLRKERGTTIVFITHDLGLAYYVSDRIAIMHRGKI 232 R++IADEPT+ +D ++ IL ML LR+E TTI+ ITH+L +A ++DRIA+M+ G + Sbjct: 176 RIIIADEPTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHV 235 Query: 233 CEEGDAKRVIEAPRHEYTKSLLADVPRLMAEWSLE 267 E D + E P H YTK LL +P+ + +E Sbjct: 236 VEVADVFSLFERPLHPYTKGLLKSIPKPHVDEEIE 270 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 152 bits (383), Expect = 1e-38 Identities = 93/255 (36%), Positives = 142/255 (55%), Gaps = 10/255 (3%) Query: 13 DLTRYFGIGRRRFAAVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSS----GE 68 DL YF R AVD V+ R GE++ I GESGSGK+TLA LGL+ P G Sbjct: 10 DLKTYFYTLRGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGR 69 Query: 69 VRYRGEVLRLRGQRE--RRAYWSEVQAIFQDPFASFNQFFRVDRFLQDCLKV-AGIQASE 125 + G + + E R+ W +V +FQ + V R +++ L++ G+ Sbjct: 70 IMIDGMDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGV--GR 127 Query: 126 QEARRIKEEACSFVNLPYHEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMID 185 EAR+ E V L + I ++YP ELSGGQ QR++IA ++P ++IADEPT+ +D Sbjct: 128 HEARQRVYELLESVGL-HRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALD 186 Query: 186 ACSRSTILDMLLSLRKERGTTIVFITHDLGLAYYVSDRIAIMHRGKICEEGDAKRVIEAP 245 ++ IL++L L E+ +I+ ITHDL + +++ + IM+ GKI E G + V P Sbjct: 187 VVVQAQILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEYGPSDAVFTKP 246 Query: 246 RHEYTKSLLADVPRL 260 +H YT++LL +P+L Sbjct: 247 QHPYTQALLKAIPKL 261 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 132 bits (331), Expect = 1e-32 Identities = 85/267 (31%), Positives = 137/267 (51%), Gaps = 11/267 (4%) Query: 8 VLEGVDLTRYFGIGRRRFAAVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSS- 66 ++E +L YF A++ V+ GE +VGE+G GK+ ++ L+ P Sbjct: 9 IIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGR 68 Query: 67 ---GEVRY------RGEVLRLRGQRERRAYWSEVQAIFQDPFASFNQFFRVDRFLQDCLK 117 G++ Y R +++ L + RR E+ IFQDP A+ + + + + + + Sbjct: 69 IVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETML 128 Query: 118 VAGIQASEQEARRIKEEACSFVNLPYHEIYNK-YPFELSGGQMQRLMIARVFIIKPRVLI 176 G S +E R V +P E K YP ELSGG QR +I +P++LI Sbjct: 129 AHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLI 188 Query: 177 ADEPTSMIDACSRSTILDMLLSLRKERGTTIVFITHDLGLAYYVSDRIAIMHRGKICEEG 236 ADEPT+ +D ++ I+D+L L++E G T++ ITH+LGL DR+A+M+ G I EE Sbjct: 189 ADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEEA 248 Query: 237 DAKRVIEAPRHEYTKSLLADVPRLMAE 263 + P H YT++L+ VP +A+ Sbjct: 249 PVDELFSNPLHPYTRALIRAVPNPLAK 275 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 122 bits (306), Expect = 9e-30 Identities = 79/264 (29%), Positives = 137/264 (51%), Gaps = 17/264 (6%) Query: 6 EYVLEGVDLTRYFGIGRRRFAAVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPS 65 E LEGV + FG + AVDHV++ ++GE ++G SG GKTT ++ GL P Sbjct: 3 EIRLEGV--VKRFG----KVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPD 56 Query: 66 SGEVRYRGEVLRLRGQRERRAYWSEVQAIFQDP--FASFNQFFRVDRFLQDCLKVAGIQA 123 G + GE + + ++R V +FQ+ + + F + L K G+ Sbjct: 57 EGRILIDGEDVTFKDPKDRN-----VAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGL-- 109 Query: 124 SEQEARRIKEEACSFVNLPYHEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSM 183 ++ + RR E + + ++ ++ P +LSGGQ QR+ +AR + +P+V + DEP S Sbjct: 110 TKDDIRRRVIEVAKLLRI--EDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSN 167 Query: 184 IDACSRSTILDMLLSLRKERGTTIVFITHDLGLAYYVSDRIAIMHRGKICEEGDAKRVIE 243 +DA R + L L+K+ T V++THD A ++DRIA+M++G++ + G + V Sbjct: 168 LDALLRLAMRAELKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEVYM 227 Query: 244 APRHEYTKSLLADVPRLMAEWSLE 267 P+H + + + P + E +E Sbjct: 228 RPKHTFVATFIGAPPMNLVECDVE 251 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 112 bits (281), Expect = 7e-27 Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 15/232 (6%) Query: 14 LTRYFGIGRRRFAAVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRG 73 +T+ FG A+D V++ +GEI +++G SG GKTT ++ G P G V Y G Sbjct: 9 VTKRFG----NTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRV-YIG 63 Query: 74 EVLRLRGQRERRAYWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKE 133 R + Y +FQ+ + RV + LK+ + SE RR++ Sbjct: 64 S----RDVTMLKPYERNTAMVFQN--YALWPHMRVFDNIAYGLKLRKLPRSEI-VRRVRW 116 Query: 134 EACSFVNLPYHEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTIL 193 A L + ++YP +LSGGQ QR+ +AR + +P VL+ DEP S +DA R + Sbjct: 117 AA---ELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMR 173 Query: 194 DMLLSLRKERGTTIVFITHDLGLAYYVSDRIAIMHRGKICEEGDAKRVIEAP 245 + ++ L+K G TIV++THD A +S R+A+M+RG++ + G V E P Sbjct: 174 EEIVRLQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVYEKP 225 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 109 bits (273), Expect = 6e-26 Identities = 86/252 (34%), Positives = 124/252 (49%), Gaps = 21/252 (8%) Query: 9 LEGVDLTRYFGIGRRRFAAVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGE 68 LEGV + FG AV VN+ + E VSI+G SGSGKTTL + G+ +PS G Sbjct: 6 LEGV--WKVFG----NVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGR 59 Query: 69 VRYRG-EVLRLRGQRERRAYWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQE 127 + + +V L + + A++ N F + L+ G A Sbjct: 60 IYFNDVDVTDLPPNKRNIGLVFQNYALYPHMTVYENIAFPLR------LRNFGEPA---- 109 Query: 128 ARRIKEEACSFVNLPYHE-IYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDA 186 IKE+ S L E + ++YP +LSGGQ QR+ +AR + +P VL+ DEP S +DA Sbjct: 110 ---IKEKVLSVAKLLGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDA 166 Query: 187 CSRSTILDMLLSLRKERGTTIVFITHDLGLAYYVSDRIAIMHRGKICEEGDAKRVIEAPR 246 R I L L+KE G T +++THD A ++DRIAI+ G I + G V PR Sbjct: 167 LLRIKIRSELKKLQKELGITAIYVTHDQSEALAMADRIAIIASGVIQQVGKPWDVYYKPR 226 Query: 247 HEYTKSLLADVP 258 + + S + P Sbjct: 227 NVFVASFIGTPP 238 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 108 bits (270), Expect = 1e-25 Identities = 78/228 (34%), Positives = 119/228 (52%), Gaps = 20/228 (8%) Query: 38 GEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGEVL--RLRGQRER----RAYWSEV 91 G + +I+G SGSGK+TL ++ L+ G R GEV + +E R Y V Sbjct: 31 GTVTAIMGPSGSGKSTLIRVINRLIDLIPG-ARVEGEVWINNMNVMKEDPYNIRRYTGMV 89 Query: 92 QAIFQDPFASFNQFFRVDRFLQDCL--KVAGIQASEQEARRIKEEACSFVNLPYHEIYNK 149 FQ+P N F + + + K+ G+ +++E I E A +L + E+ ++ Sbjct: 90 ---FQEP----NPFPHMTIYENVAIGPKLHGLAKNKKELDEIVEWALKMAHL-WDEVKDR 141 Query: 150 ---YPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLRKERGTT 206 YP +LSGGQ QRL +AR +KPRVL+ DEPT+ ID S I ++ KE T Sbjct: 142 LSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKEEMAT 201 Query: 207 IVFITHDLGLAYYVSDRIAIMHRGKICEEGDAKRVIEAPRHEYTKSLL 254 ++ +TH A +SD+I ++ G++ E G K ++ PRHE TK L Sbjct: 202 VIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELVLRPRHELTKKFL 249 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 107 bits (266), Expect = 4e-25 Identities = 73/241 (30%), Positives = 123/241 (51%), Gaps = 13/241 (5%) Query: 16 RYFGIGRR--RFAAVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRG 73 R GI +R + A+ +++ ++GE V ++G SG GKTT +I GL RP +G V + G Sbjct: 5 RLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFDG 64 Query: 74 EVLRLRGQRERRAYWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKE 133 + ++R V +FQ + RV + LK+ + E RR++ Sbjct: 65 RDVTGLPPKDRN-----VAMVFQS--YALWPHMRVFDNIAFPLKIKKLPRDEI-VRRVRW 116 Query: 134 EACSFVNLPYHEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTIL 193 A L + ++YP +LSGGQ QR+ +AR + +P VL+ DEP S +DA R + Sbjct: 117 AA---ELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMR 173 Query: 194 DMLLSLRKERGTTIVFITHDLGLAYYVSDRIAIMHRGKICEEGDAKRVIEAPRHEYTKSL 253 + L++ G T++++THD A + DRI +M+ G+I + G V P + + + Sbjct: 174 SEIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDVYHRPANTFVATF 233 Query: 254 L 254 + Sbjct: 234 I 234 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 105 bits (263), Expect = 9e-25 Identities = 79/231 (34%), Positives = 113/231 (48%), Gaps = 10/231 (4%) Query: 27 AVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGEVLRLRGQRERRA 86 A+ V+ F E I +++G SG GKTT+ K+ GLL+P G V + G V ERR+ Sbjct: 20 ALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFGG-VDYTGLPPERRS 78 Query: 87 YWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKEEACSFVNL-PYHE 145 V +FQD A F D L+ G E RR E A V L P E Sbjct: 79 ----VGFVFQD-LALFPHMTVYDNVAFG-LRARGFSGGE--VRRQVEWALETVGLTPPRE 130 Query: 146 IYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLRKERGT 205 + LSGGQ QR+ +AR +P VL+ DEP S +D R +L L L+++ G+ Sbjct: 131 FMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQRKLGS 190 Query: 206 TIVFITHDLGLAYYVSDRIAIMHRGKICEEGDAKRVIEAPRHEYTKSLLAD 256 T++++THD A ++D + IM G+I + G V P + Y + D Sbjct: 191 TMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEVYTRPANVYVATFFGD 241 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 105 bits (261), Expect = 2e-24 Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 18/219 (8%) Query: 31 VNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRG-EVLRLRGQ-----RER 84 V++ GE + I+G SGSGK+TL K L+ P SG + +RG +V RL G R + Sbjct: 23 VDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVFRGVDVTRLSGSQLRMVRRK 82 Query: 85 RAYWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKEEACSFVNLPYH 144 Y + ++F N + +++ L G+ + E R +K + L Sbjct: 83 IGYLPQSYSLFPHMTVLRNITYPLEKAL-------GLSRRDAEERAVKYLSM----LGIE 131 Query: 145 EIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLRKERG 204 ++ +++P LSGGQ QR +AR ++P +L+ DEPTS +D SR+ +L+ L + G Sbjct: 132 DLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEALFRV-ATLG 190 Query: 205 TTIVFITHDLGLAYYVSDRIAIMHRGKICEEGDAKRVIE 243 ++ +TH+ A V+DR+A M G + EEG ++E Sbjct: 191 KAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSELVE 229 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 100 bits (249), Expect = 4e-23 Identities = 74/226 (32%), Positives = 113/226 (50%), Gaps = 13/226 (5%) Query: 8 VLEGVDLTRYFGIGRRRFAAVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSG 67 V+EGV + + R A+ V++ GE+++I+G SGSGKTTL I G+ RP++G Sbjct: 12 VVEGV--VKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAG 69 Query: 68 EVRYRG-EVLRLRGQRERRAYWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQ 126 V G EV G+ RR V +FQ + L++ L + Sbjct: 70 RVIVDGFEVSSAGGEELRRFRLERVGYVFQQ-----HNLIPTLTALENILLPMALAGKAN 124 Query: 127 EARRIKEEACSFVNLPYHEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDA 186 R +E V L E +YP ELSGG+ QRL +A P +++ADEPT +D Sbjct: 125 RLRG--QELLRRVGLGGKE--RRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDI 180 Query: 187 CSRSTILDMLLSLRKERGTTIVFITHDLGLAYYVSDRIAIMHRGKI 232 + I+ +LL RG T+V THD +A ++DR+A++ G++ Sbjct: 181 ATGERIVRILLEEAHSRGKTVVLTTHDPRVA-RMADRVAVIEDGRL 225 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 94.4 bits (233), Expect = 3e-21 Identities = 76/226 (33%), Positives = 112/226 (49%), Gaps = 16/226 (7%) Query: 22 RRRFA---AVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGEVLRL 78 R+RF AV V+ +GE I+G +GSGKTTL ++ G+LRPS G VR G + Sbjct: 11 RKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVCGYDVWG 70 Query: 79 RGQRERRAYWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKEEACSF 138 G RE R + QDP + + L + +EARR+ E Sbjct: 71 DGWREARGL---IGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREARRVLE----- 122 Query: 139 VNLPYHEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLS 198 L + ++ + LSGGQ + L IA P V++ DEP S +D +R + + S Sbjct: 123 -MLGFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARES---LWAS 178 Query: 199 LRKE-RGTTIVFITHDLGLAYYVSDRIAIMHRGKICEEGDAKRVIE 243 LRK +G T++F +HD A SDR+ IMHRG++ G + +I+ Sbjct: 179 LRKAFKGRTVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPRELIQ 224 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 91.7 bits (226), Expect = 2e-20 Identities = 81/263 (30%), Positives = 129/263 (49%), Gaps = 27/263 (10%) Query: 3 MGNEYVLEGVDLTRYFGIGRRRFAAVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLL 62 M +E ++ +L + +G F AVD V+ GE+ S++G +G+GKTT K+ LL Sbjct: 1 MESEAMVVAEELVKDYG----GFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLL 56 Query: 63 RPSSGEVRYRG-EVLRLRGQRERRAYWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGI 121 RP+SGE G ++R G R + + QD A + ++Q ++ G+ Sbjct: 57 RPTSGEAWIAGYSIVREPGNVRR-----VIGLVPQDLTADDEMSGWDNVYIQ--ARLYGL 109 Query: 122 QASEQEARRIKEEACSFVNLPYHEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPT 181 +S EAR E +++L E ++ SGG ++L IA + P+VL DEPT Sbjct: 110 PSS--EARERTREVLDYLDL--MEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPT 165 Query: 182 SMIDACSRSTILDMLLSLRKERGTTIVFITHDLGLAYYVSDRIAIMHRGKICEEGDAKRV 241 +D SR ++ + L K TI+ TH + A +SDR+AI+ RG+I EG + + Sbjct: 166 LGLDVHSRRSLWRYIEDL-KRSAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEEL 224 Query: 242 ----------IEAPRHEYTKSLL 254 IE EYT+ L+ Sbjct: 225 KARVKGETVYIELKDPEYTEPLV 247 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 91.7 bits (226), Expect = 2e-20 Identities = 69/254 (27%), Positives = 116/254 (45%), Gaps = 20/254 (7%) Query: 3 MGNEYVLEGVDLTRYFGIGRRRFAAVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLL 62 M + +L DL + FG A+D VN+ G++ ++G +GSGKTTL + G Sbjct: 1 MAGDIILRVEDLEKRFG----GIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFY 56 Query: 63 RPSSGEVRYRGEVLRLRGQRERRAYWSEVQAIFQDPFASFNQFFRVDRFLQ------DCL 116 +P G V ++G + G + FQ P F ++ L + + Sbjct: 57 KPDGGRVLFKGR--DITGMSPHEISKLGLVRTFQIP-KPFTNLTVLENVLTAADSPGENV 113 Query: 117 KVAGIQAS-----EQEARRIKEEACSFVNLPYHEIYNKYPFELSGGQMQRLMIARVFIIK 171 +AG+ E+ A E +V L + ++++ ELSGGQM+ L IAR + Sbjct: 114 YLAGLARRLWLGFEKRAAARAFEILGWVGLDH--MWDRRSGELSGGQMKLLEIARAIMKG 171 Query: 172 PRVLIADEPTSMIDACSRSTILDMLLSLRKERGTTIVFITHDLGLAYYVSDRIAIMHRGK 231 ++I DEP + ++ +I++ + L +E+G T + I H +GL DR+ M GK Sbjct: 172 AEMIIMDEPAAGVNPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGK 231 Query: 232 ICEEGDAKRVIEAP 245 + G V+ P Sbjct: 232 VIASGKPDEVLNNP 245 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 91.3 bits (225), Expect = 2e-20 Identities = 69/209 (33%), Positives = 102/209 (48%), Gaps = 15/209 (7%) Query: 28 VDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGEVLRLRGQRERRAY 87 +D V++ GE V +VG +G+GKTTL K+ LGL R G V G L RE RA Sbjct: 20 LDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLLNG----LDPWREPRAR 75 Query: 88 WSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKEEACSFVNLPYHEIY 147 V +F+ P + V FL+ + G S + A L HE + Sbjct: 76 -EGVGVVFERP--NLPSSMPVVEFLESAAAIIGSSPSRVDW------AIRAAGLEGHE-W 125 Query: 148 NKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLRKERGTTI 207 +P +LS G QR IA + +PR L+ADEPTS +D R +L +L L +E G ++ Sbjct: 126 KTFP-QLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLNREHGLSL 184 Query: 208 VFITHDLGLAYYVSDRIAIMHRGKICEEG 236 + +H + V+ RI ++ G++ EG Sbjct: 185 LVSSHVIVELLRVATRIYVLAGGRLAAEG 213 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 90.1 bits (222), Expect = 5e-20 Identities = 76/219 (34%), Positives = 106/219 (48%), Gaps = 12/219 (5%) Query: 20 IGRRRFAAVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRG-EVLRL 78 I RR A+ V+ EGEI S +G +G+GKTT +I LL P GE R G +V++ Sbjct: 20 IRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAGFDVVKE 79 Query: 79 RGQ-RERRAYWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKEEACS 137 R + R+R V+ F + R + GI E ++R +E Sbjct: 80 RWEVRKRIGVMLSVERGFYWKLTGRENLYYFGR-------IYGIPQGELKSR--IKEVLD 130 Query: 138 FVNLPYHEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLL 197 V L +K E+S G RL +ARV + P VLI DEPT +D S TI ++ Sbjct: 131 LVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIR 190 Query: 198 SLRKERGTTIVFITHDLGLAYYVSDRIAIMHRGKICEEG 236 SL E G TI TH++ A +SDR+ I+ G+I EG Sbjct: 191 SLASE-GRTIFITTHNMVEAEMISDRVGIIIGGRIAMEG 228 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 87.0 bits (214), Expect = 4e-19 Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 15/209 (7%) Query: 27 AVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGEVLRLRGQRERRA 86 A+D+V+ R GE+ +++GE+G+GKTTL +I G ++P+ GE+ G + RG Sbjct: 28 ALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYVWGRKVSWRGP----- 82 Query: 87 YWSEVQAIFQDPFASFNQFFRVDRFLQD---CLKVAGIQASEQEARRIKEEACSFVNLPY 143 W AI + QF V+ + + ++ + EARR E + L Sbjct: 83 -W---DAIRNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRTLETAERLGLEI 138 Query: 144 HEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLRKER 203 K +L G QR+ I + +VLI DEPTS + + L L K+ Sbjct: 139 D--LAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFS-TLRLLKDM 195 Query: 204 GTTIVFITHDLGLAYYVSDRIAIMHRGKI 232 G ++V+ITH LG V+DR+ ++ RG++ Sbjct: 196 GVSVVYITHKLGEVVRVADRVTVLRRGRV 224 Score = 58.9 bits (141), Expect = 1e-10 Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 20/213 (9%) Query: 28 VDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGEVLRLRGQRE-RRA 86 V V++ REGEIV I G +G+G+ L +GL RP G + +G R+ G + RA Sbjct: 278 VREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEVQGR--RIEGSLDFYRA 335 Query: 87 YWSEV-----QAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEA--RRIKEEACSFV 139 + + + D + N F K ++ S E RR+ E Sbjct: 336 GGGYIAGDRGKVLAMDYSVAENIAF----LYYTASKTLLLRRSRLEDLFRRLVERFRLVA 391 Query: 140 NLPYHEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSL 199 P+ + LSGG Q++++ + ++L+A PT +D + S + ++L L Sbjct: 392 RSPWTPVGR-----LSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTSFVRNLLSEL 446 Query: 200 RKERGTTIVFITHDLGLAYYVSDRIAIMHRGKI 232 ++ G I+ ++ DL +SDRI +M G++ Sbjct: 447 ARQ-GAGILLVSTDLDEILELSDRIYVMSGGRV 478 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 84.3 bits (207), Expect = 3e-18 Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 26/232 (11%) Query: 31 VNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVR------YRGEVLRLRGQRER 84 V++ + GEI + G +G+GKTT ++ +GLL SGE R + G R++G+ Sbjct: 33 VSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPWGGGFERVKGE--- 89 Query: 85 RAYWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKEEACSFVNLPYH 144 Y E ++++ +++ L A + + ++ + E A + L Sbjct: 90 VGYLPEDASVYERLTG-----------MENILFYARLYSGWRDVEELVENAVFYSGLSRE 138 Query: 145 EIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLRKERG 204 ++ + S G +RL++ + KPR+++ DEPTS +D + + I +L L +E G Sbjct: 139 DLARR-AGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSRE-G 196 Query: 205 TTIVFITHDLGLAYYVSDRIAIMHRGKICEEGDAKRVIEAPRHEYTKSLLAD 256 I+ THDL LA ++DR+ I+H G G R++E EY L D Sbjct: 197 RAILVTTHDLALAEEIADRVTIIHGGSTVASGPPYRLVE----EYCGETLED 244 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 81.6 bits (200), Expect = 2e-17 Identities = 74/246 (30%), Positives = 112/246 (45%), Gaps = 37/246 (15%) Query: 7 YVLEGVDLTRYFGIG-----RRRFAAVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGL 61 Y +E L + + +G R A+D V++ G + S++G +G+GKTTL KI L Sbjct: 3 YAVEAEALVKEYRMGLLPWRARTIRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTL 62 Query: 62 LRPSSGEVRYRG-----EVLRLRGQ------RERRAYWSEVQAIFQDPFASFNQFFRVDR 110 L P SG R G E +R + ER YW + D F+Q + + Sbjct: 63 LLPDSGWARVAGFDVVREANNVRSRIGVVLGGERALYW---RLSGWDNLWFFSQLYGI-- 117 Query: 111 FLQDCLKVAGIQASEQEARRIKEEACSFVNLPYHEIYNKYPFELSGGQMQRLMIARVFII 170 +EA+R +E V L E + S G QRL IAR I Sbjct: 118 -------------PPREAKRRVKELLEIVGL--EEWAHVRVENYSKGMKQRLHIARGLIN 162 Query: 171 KPRVLIADEPTSMIDACSRSTILDMLLSLRKERGTTIVFITHDLGLAYYVSDRIAIMHRG 230 P VL+ DEPT +D + + ++ + +E G T++ TH + A +SDR+AI+ +G Sbjct: 163 DPEVLLLDEPTIGLDPKAAREVRSIIRRIVRE-GRTVLLTTHYMVEAEELSDRVAIISKG 221 Query: 231 KICEEG 236 +I EG Sbjct: 222 RIVAEG 227 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 80.5 bits (197), Expect = 4e-17 Identities = 71/255 (27%), Positives = 118/255 (46%), Gaps = 40/255 (15%) Query: 6 EYVLEGVDLTRYFGIGRRRFAAVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPS 65 E +LE + Y+G F A+ V++ +GEIV+++G +G+GKTT GLL+P Sbjct: 4 EPLLEVKSIDVYYG----EFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPR 59 Query: 66 SGEVRYRGEVLR----LRGQRERRAYWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGI 121 +G + ++G + + E ++ E + IF N L+VA Sbjct: 60 NGSIIWQGRDITGLPAFKRVEEGISHVPEGRGIFPRLTVYEN------------LRVAA- 106 Query: 122 QASEQEARRIKEEACSFVNLPYHEIYNKYPF----------ELSGGQMQRLMIARVFIIK 171 RR KE + ++Y +P LSGG+ Q L IAR I + Sbjct: 107 -----STRRAKEHFQDSLE----QVYTIFPILKARRSQLAGTLSGGEQQMLAIARALIQR 157 Query: 172 PRVLIADEPTSMIDACSRSTILDMLLSLRKERGTTIVFITHDLGLAYYVSDRIAIMHRGK 231 P +L+ DEP+ + ++ + LR+E G TI+ + ++GL+ V+DR +M G+ Sbjct: 158 PILLMMDEPSLGLAPKLARDVIYLASRLREELGVTILLVEQNVGLSLKVADRGYVMETGR 217 Query: 232 ICEEGDAKRVIEAPR 246 I EG + + PR Sbjct: 218 IVLEGASDELALDPR 232 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 80.1 bits (196), Expect = 5e-17 Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 11/202 (5%) Query: 31 VNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGEVLRLRGQRERRAYWSE 90 VN+ FR +V I+G +G+GKTT K LGL++P+ G V G G+ E ++ Sbjct: 21 VNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLDG--FEATGRPEMVGRYAG 78 Query: 91 VQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKEEACSFVNLPYHEIYNKY 150 + Q+P A V F++ L++ G+ + + A + E+ Sbjct: 79 Y--VPQNPSAPKLSPMTVREFVETSLRLRGVTRARERAVEVLHTLGI-----RGEVLESR 131 Query: 151 PFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLRKERGTTIVFI 210 +ELS G +QR+ IAR P++L+ DEP + +D R I ++ L +ER ++ Sbjct: 132 LWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAGLARER--LVLMT 189 Query: 211 THDLGLAYYVSDRIAIMHRGKI 232 +HD L +D I +++R I Sbjct: 190 SHDPSLLLGHTDIIVVINRDLI 211 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 77.8 bits (190), Expect = 3e-16 Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 13/230 (5%) Query: 27 AVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGEVL-------RLR 79 A+D+V++ R GEI+ I+G +G+GKT+L + G+ +P G V ++G + R+ Sbjct: 16 ALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDITGLKPHQRIT 75 Query: 80 GQRERRAYWSEV---QAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKEEAC 136 R SE+ + ++ + + R L+ L + E EAR E Sbjct: 76 LGLSRTFQHSELFHSMTVLENIMVRLHPWTR-GSILEKALWAFRAKRWEVEARERAEHVI 134 Query: 137 SFVNLPYHEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDML 196 ++L HE + L G +++ +A P V++ DEP + + + I+ + Sbjct: 135 DLLDL--HEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEKEDIVRAI 192 Query: 197 LSLRKERGTTIVFITHDLGLAYYVSDRIAIMHRGKICEEGDAKRVIEAPR 246 + + TT+V I HD+ + V DR+ +M GK+ EG + R Sbjct: 193 IETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHEAVADER 242 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 76.6 bits (187), Expect = 6e-16 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 7/210 (3%) Query: 27 AVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGEVLRLRGQRERRA 86 A+ V F G + +++GE+G+GKTTL K +G+++P G + G LR +G + + Sbjct: 20 ALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPKGPGD--S 77 Query: 87 YWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKEEACSFVNLPYHEI 146 S + Q+P + L L VAG +A ++AR + EA + L Sbjct: 78 LRSGIYMASQNP--PVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAEASEALGLNIDP- 134 Query: 147 YNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLRKERGTT 206 ++Y E+ + QRL + + + R ++ DEPT+ + + +L+ L G Sbjct: 135 -DRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAAS-GAA 192 Query: 207 IVFITHDLGLAYYVSDRIAIMHRGKICEEG 236 ++ +TH +G A +DR+ I+ +G EG Sbjct: 193 VLLVTHRIGEAMEHADRLVILRKGVKVYEG 222 Score = 63.5 bits (153), Expect = 5e-12 Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 24/206 (11%) Query: 36 REGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRG-EVLRLRGQRERRAYWSEV--- 91 R+GE+V + G +G+G+ L ++ +GL +P+ G + G +V R RR + Sbjct: 278 RQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRLGLGVIPEE 337 Query: 92 ---QAIFQDPFASFNQFFRV----DRFLQDCLKVAGIQASEQEARRIKEEACSFVNLPYH 144 A+ +FN + D F+ D + +E+ R + +A S Sbjct: 338 RLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKL--AEEMIRDMGIKAVS------- 388 Query: 145 EIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLRKERG 204 + ELSGG MQRL++AR +KPR+L+A P + +D + + +M + + ERG Sbjct: 389 --PRQMVDELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEM-MRMSSERG 445 Query: 205 TTIVFITHDLGLAYYVSDRIAIMHRG 230 +V I DL VS++I + G Sbjct: 446 GVLV-IDEDLDFLLRVSNKIYVASGG 470 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 72.0 bits (175), Expect = 1e-14 Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 32/208 (15%) Query: 36 REGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGEVLRLRGQRERRAYWSEVQAIF 95 REG++V ++G +G+GKTT +I G L+P+ G V G+ E W E+ F Sbjct: 104 REGQVVGLLGRNGTGKTTALRILAGELKPNLGRVE--------GGEPE----WDEILKRF 151 Query: 96 QDPFASFNQFFRVDRFLQDCLKVA-GIQASEQEARRIKEEACSFV--------------N 140 + + +FR + + L+VA IQ E RR+K + Sbjct: 152 RG--SELQTYFR--KLVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGVALELAEQ 207 Query: 141 LPYHEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLR 200 + +++++ +LSGG++Q+++I V V I DEP+S +D R + ++ Sbjct: 208 VGLDKVFDRDVRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAA 267 Query: 201 KERGTTIVFITHDLGLAYYVSDRIAIMH 228 + G ++ + HDL + YVSD + I++ Sbjct: 268 RP-GAYVMVVEHDLAVLDYVSDLVHILY 294 Score = 57.4 bits (137), Expect = 4e-10 Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 20/190 (10%) Query: 38 GEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGEVLRLRGQRERRAYWSEVQAIFQD 97 GE++ + G +G GKTT + G L+P G V E LR+ +Y + + Sbjct: 383 GEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYVEDLRV-------SYKPQYISPESL 435 Query: 98 PFASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKEEACSFVNLPYHEIYNKYPFELSGG 157 P A+ Q + + G + + +R++ + ++ + LSGG Sbjct: 436 PDATVEQVLKA---ANPAILAPGSWLNLELVKRMRLD----------KLLERRVRTLSGG 482 Query: 158 QMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLRKERGTTIVFITHDLGLA 217 ++Q++ +A + V + DEP++ +D R + + + + R + + HDL + Sbjct: 483 ELQKVAVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALVVEHDLMIL 542 Query: 218 YYVSDRIAIM 227 YVSDRI ++ Sbjct: 543 DYVSDRIMLV 552 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 70.9 bits (172), Expect = 3e-14 Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 15/216 (6%) Query: 27 AVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGEVLRLRGQRERRA 86 A+ V+ GE+ +G +G+GKTT ++ +G RP+SG R G L G R Sbjct: 19 ALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARVFGVELYNPGASGVRR 78 Query: 87 YWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKEEACSFVNLPYHEI 146 V F+ + + +D + C V G +R + E LP Sbjct: 79 RVGYVPGEFEF-YGGVSGGRMLDYW---CRLVGGC------SRGVVRELLEAFPLPLERA 128 Query: 147 YNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLRKERGTT 206 Y S G Q L + F +P +++ DEPT+ +D +R +LD + S +E G T Sbjct: 129 VGTY----SRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDFVRSKARE-GVT 183 Query: 207 IVFITHDLGLAYYVSDRIAIMHRGKICEEGDAKRVI 242 + F +H L V+DR+ ++ G + D ++ Sbjct: 184 VFFSSHVLSEVQRVADRVGLLRSGVLVALEDVSSLL 219 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 69.3 bits (168), Expect = 9e-14 Identities = 62/227 (27%), Positives = 104/227 (45%), Gaps = 16/227 (7%) Query: 31 VNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGEVLRLRGQRERRAYWSE 90 V+ G +V+++G +GSGKTTL ++ G+++PS G V EV R RR Sbjct: 25 VSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRV----EVCGSPPGRVRRMLGYA 80 Query: 91 VQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKEEACSFVN-LPYHEIYNK 149 + DP + + R+ G+ RR EE + + + E+ + Sbjct: 81 PASPEVDPRLKAVEVALLYRY--------GVSEGVAWGRRDWEEVLAALGEMGVGELAWR 132 Query: 150 YPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLRKERGTTIVF 209 ELS GQ + +++A V +P + + DEP S +D + + +L SLR TIV+ Sbjct: 133 RWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRSLRGR--ATIVY 190 Query: 210 ITHDLGLAYYVSDRIAIMHRGKICEEGDAKRVIEAPRHEYTKSLLAD 256 THD LA +D + ++ G + +G + V+ E + AD Sbjct: 191 TTHD-PLAAMAADSVIMLREGLLHAQGPPEAVVTPETIEEVYGIPAD 236 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 68.9 bits (167), Expect = 1e-13 Identities = 63/236 (26%), Positives = 111/236 (47%), Gaps = 17/236 (7%) Query: 8 VLEGVDLTRYFGIGRRRFAAVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSG 67 +L+ D+ + FG A+ V+ R GE V ++G +G+GKTTL I G+ P G Sbjct: 4 ILDVRDVYKRFG----GIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRG 59 Query: 68 EVRYRG-EVLRLRGQRERRAYWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASE- 125 V Y+G ++ R RA + I + P A+ L + + A ++ ++ Sbjct: 60 RVIYKGVDITGWPAYRRSRAGIARTFQIVR-PLANLT-------VLNNVIVGALLRTNDI 111 Query: 126 QEARRIKEEACSFVNLPYHEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMID 185 +EAR EA V L E + +L+ + +RL +AR +P +L+ DE + + Sbjct: 112 REARERAMEAIDMVGLAGKE--DILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLR 169 Query: 186 ACSRSTILDMLLSLRKERGTTIVFITHDLGLAYYVSDRIAIMHRGKICEEGDAKRV 241 ++ LL + K RG TI+ + H + ++R+ ++H G+ EG + V Sbjct: 170 PREVDDLVYTLLEISK-RGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREV 224 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 64.7 bits (156), Expect = 2e-12 Identities = 61/223 (27%), Positives = 101/223 (45%), Gaps = 24/223 (10%) Query: 28 VDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLL-----RPSSGEVRYRGEVLRLRGQR 82 + ++++ +G I ++G +G+GKTTL K G++ R + G ++ GE + R Sbjct: 21 IKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNREPD 80 Query: 83 E--RRA--YWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKEEACSF 138 E RR Y E + IF++ N L AG AS + R + F Sbjct: 81 EIARRGVIYVMEGRRIFKELTTEEN--------LVSVAYAAG--ASRDDIRSVLSY---F 127 Query: 139 VNLPYHEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLS 198 L E + LSGG+ Q L IA + +P++L+ DEP+ + S I + Sbjct: 128 PRLK--ERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKM 185 Query: 199 LRKERGTTIVFITHDLGLAYYVSDRIAIMHRGKICEEGDAKRV 241 L +E G TI+ + A +SD ++ G+I EG A+ + Sbjct: 186 LHREEGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEEL 228 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 64.7 bits (156), Expect = 2e-12 Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 32/216 (14%) Query: 31 VNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGE-VLRLRGQRERR-AYW 88 V++ G + +VG +G+GKTTL + LGL R G V GE V R G RR AY Sbjct: 27 VSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALLGEPVERAGGSLFRRVAYL 86 Query: 89 SEVQAIFQDP--------FASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKEEACSFVN 140 E +++ +AS ++ +L++ +++G+ R+ E S+ Sbjct: 87 PEDGEPYRNMTGHEFLRLYASIYGVEDLEGYLEEASRLSGLGG------RLGERVRSY-- 138 Query: 141 LPYHEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLR 200 S G +RL++A + +KP + + DEPT+ +D I +L Sbjct: 139 --------------SKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYS 184 Query: 201 KERGTTIVFITHDLGLAYYVSDRIAIMHRGKICEEG 236 + G T++ +H++ V I ++ G+I G Sbjct: 185 ERHGVTVLLSSHNMYEVESVCSEITMISSGRIVYSG 220 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 63.2 bits (152), Expect = 7e-12 Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 33/203 (16%) Query: 40 IVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGEVLRLRGQRERRAYWSEVQAIFQDPF 99 + +I+G +GSGKTTL K+ LL+P G V G R V A Q+P+ Sbjct: 18 VTAILGANGSGKTTLLKLAARLLKPDRGSV---------EGPR-------RVGAALQNPY 61 Query: 100 ASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKEEACSFVNLPYHEIYNKYPFELSGGQM 159 F +D + AG EA ++ EA L Y + P+ LS G+ Sbjct: 62 LG----FLGPTVAEDLARTAG---GRGEALKLLREA----GLEYAS--ERSPYTLSMGEA 108 Query: 160 QRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLRKERGTTIVFITHDLGLAYY 219 + L + P ++ DEPTS +D + + ++ L G ++ HD+ A Sbjct: 109 RILSVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLIARL----GVPVLVAGHDIDFAAA 164 Query: 220 VSDRIAIMHRGKICEEGDAKRVI 242 V+ I+ G++ GD +RV+ Sbjct: 165 VAGWAVILRDGRVRVSGDMERVL 187 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 62.0 bits (149), Expect = 2e-11 Identities = 54/234 (23%), Positives = 106/234 (45%), Gaps = 17/234 (7%) Query: 28 VDHVNIGFREGEIVSIVGESGSGKTTLAKIFLG--LLRPSSGEVRYRGEVLRLRGQRERR 85 ++ V+ + GE+ +++G +GSGK++L + +G + G++ GE ++ ER Sbjct: 18 LNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDILLDGESIKELPPEERA 77 Query: 86 AYWSEVQAIF---QDP--FASFNQFFRVDRFLQDCLKVAGIQ--ASEQEARRIKEEACSF 138 ++ IF QDP + F+ L + A + +R+ E A Sbjct: 78 -----LKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKIVKRMYEYATK- 131 Query: 139 VNLPYHEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLS 198 + L + + SGG+ +R + + I P+++I DEP S +D + + + Sbjct: 132 LGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGLKIVAEFIKQ 191 Query: 199 LRKERGTTIVFITHDLGLAYYVS-DRIAIMHRGKICEEGDAKRVIEAPRHEYTK 251 LR + G ++ ITH L +V DR+ +++RG + G A+ + Y + Sbjct: 192 LR-DSGRGVMLITHYARLLNFVEPDRVTVLYRGSVLARGGAELARQVEEKGYAQ 244 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 62.0 bits (149), Expect = 2e-11 Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 12/213 (5%) Query: 31 VNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGEVLRLRGQRERRAYWSE 90 V++ G I IVG +G+GK+TL K G G V + + +R Sbjct: 24 VSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLFENTDVTHMPPHDRAKIG-- 81 Query: 91 VQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEAR-RIKEEACSFVNLPYHEIYNK 149 + IFQ FR + + + L++AG E R R++E F L E + Sbjct: 82 MTFIFQ-----LENIFR-ELTVYENLRLAGYDLPEDVFRDRLEEVFSMFPRLK--ERLGQ 133 Query: 150 YPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLRKERGTTIVF 209 LSGG+ Q L +A + KP+V + DEPT+ + +L + L KE G T+V Sbjct: 134 KAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVRILNKE-GYTVVL 192 Query: 210 ITHDLGLAYYVSDRIAIMHRGKICEEGDAKRVI 242 + ++ + + D+ ++ G+I +G A+ ++ Sbjct: 193 VEQNVKASLEIGDKGVLVVNGRIAFDGPAEELL 225 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 57.8 bits (138), Expect = 3e-10 Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 23/194 (11%) Query: 27 AVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGEVLRLRGQRE--- 83 A +V F G I+ ++G +G+GKTTL K LGL++PS+GE+ G R G + Sbjct: 19 AYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVEGVNPRSPGFEKLLP 77 Query: 84 RRAYWSE--VQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEARRIKEEACSFVNL 141 R Y E V ++ P R++ + + EAR EA V L Sbjct: 78 RIGYVPELPVVPLWTTPCILLETLARLEGY------------TSVEARVRAREALEVVGL 125 Query: 142 PYHEIYNKYPF-ELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLR 200 + P +LS G +R+++A+ FI + +L+ DEP S +D + ++L ++ Sbjct: 126 AGE---CETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVA 182 Query: 201 KERGTTIVFITHDL 214 +E G T++ +H L Sbjct: 183 RE-GATVIVSSHIL 195 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 50.1 bits (118), Expect = 6e-08 Identities = 53/204 (25%), Positives = 83/204 (40%), Gaps = 22/204 (10%) Query: 13 DLTRYFGIGRR---RFAAVDHVNIGFREGEIVSIVGESGSGKTTLAKIFLGLLRPSSGE- 68 D+ R FG RR R+ D VNI G + ++VG SG+GKTTL ++ LG GE Sbjct: 439 DVLRAFGAERRVVERYVLKD-VNITVNPGSVAAVVGASGAGKTTLLRMILGKALGIGGEG 497 Query: 69 VRYRGEVLRLRGQRERRAYWSEVQAIFQDPFASFNQFFRVDRFLQDCLKVAGIQASEQEA 128 R V+++ + A F + L+ G + Sbjct: 498 YRPDSGVVKIPTNTKAAALLP----------GELEPSFGGETLLEHVASKLGDPGA---- 543 Query: 129 RRIKEEACSFVNLPYHEIYNKYPFELSGGQMQRLMIARVFIIKPRVLIADEPTSMIDACS 188 E S V L + ELS GQ +R +A + +P +L+ DE + +D + Sbjct: 544 ---AVEVLSSVGLGDAIFFRASFGELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLT 600 Query: 189 RSTILDMLLSLRKERGTTIVFITH 212 I L L + +G T++ T+ Sbjct: 601 ARRIARKLGKLARSKGITLIVSTN 624 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 43.1 bits (100), Expect = 7e-06 Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 23/204 (11%) Query: 40 IVSIVGESGSGKTTLAKIFLGLLRPSSGEVRYRGEVLRLRGQRERRAYWSEVQAIFQDPF 99 I + G +G GK+T+ ++ GL G LRG+ E R + + Sbjct: 31 ITLLAGPTGGGKSTILRVAAGLATRIYGGY--------LRGEVEARGK----PVLVPQDY 78 Query: 100 ASFNQFFRVDRFLQDCLKVAGIQASE--QEARRIKEEACSFVNLPYHEIYNKYPFELSGG 157 F L+ C + +G+ E +EA R+ EE L ++ ++ +LS G Sbjct: 79 DLFILSLTPREELEYCYEASGLPPWEARREAVRLAEE------LGIEDLLDRRVSKLSAG 132 Query: 158 QMQRLMIARVFIIKPRVLIADEPTSMIDACSRSTILDMLLSLRKERGTTIVFITHDLGLA 217 + QR+ IA + VL+ DEP + D +++ +L L E +V H + Sbjct: 133 ERQRVAIASALALGAEVLLMDEPLAYQDPLGVESLIRLLRRLDVE---GVVVAEHRVHYL 189 Query: 218 YYVSDRIAIMHRGKICEEGDAKRV 241 + + +++ G+ + G + V Sbjct: 190 LPAASSVYLVYDGRAKQLGPGEAV 213 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.140 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 270,542 Number of Sequences: 1700 Number of extensions: 11852 Number of successful extensions: 176 Number of sequences better than 1.0e-04: 40 Number of HSP's better than 0.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 82 Number of HSP's gapped (non-prelim): 51 length of query: 267 length of database: 492,079 effective HSP length: 75 effective length of query: 192 effective length of database: 364,579 effective search space: 69999168 effective search space used: 69999168 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719147|ref|YP_003874679.1| hypothetical protein STHERM_c14660 [Spirochaeta thermophila DSM 6192] (157 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 100 3e-23 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 99 7e-23 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 91 1e-20 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 91 1e-20 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 85 8e-19 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 84 1e-18 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 79 4e-17 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 77 2e-16 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 40 2e-05 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 39 5e-05 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 99.8 bits (247), Expect = 3e-23 Identities = 57/129 (44%), Positives = 77/129 (59%), Gaps = 2/129 (1%) Query: 4 SSALDVSSQKAVIRMLRLLMRERVIKAMIFITHELPLLYHVADDIAVMYAGQLVEKGTAR 63 +SALDVS Q ++ +L+ L R+ + +FI+H+L ++ +++D IAVMY G++VE G A Sbjct: 202 TSALDVSVQAQILNLLKDLQRKYSL-TYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAE 260 Query: 64 EVIFDPLHPYSHALMGSILVPDEEFMSSSRTIRTIPGAPPNLKEEIRGCRFADRCPYAFD 123 EV PLHPY+ L+ SI VPD E IR I G PP+ GCRF RCP A D Sbjct: 261 EVFEKPLHPYTKVLLESIPVPDPEVAKRRSRIR-IKGEPPSPINPPSGCRFRTRCPIAVD 319 Query: 124 ACREHAVAE 132 C E E Sbjct: 320 KCLEEPPLE 328 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 98.6 bits (244), Expect = 7e-23 Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 7/142 (4%) Query: 4 SSALDVSSQKAVIRMLRLLMRERVIKAMIFITHELPLLYHVADDIAVMYAGQLVEKGTAR 63 ++ALDV Q ++ +++ L ER + M+ +TH++ L +D IAVMYAG+LVE G A Sbjct: 180 TTALDVVVQAKIMDLMKKLQEERGLTVML-VTHDIGLAAEYSDRIAVMYAGELVEIGPAE 238 Query: 64 EVIFDPLHPYSHALMGSILVPDEEFMSSSRTIRTIPGAPPNLKEEIRGCRFADRCPYAFD 123 +V+ +P+HPY+ L+ S+ P E+ R ++ IPG+PP+L+ GCRF RCP Sbjct: 239 DVVSNPIHPYTEMLIKSVPDPWED-----REVKPIPGSPPDLRNPPPGCRFHPRCPLRQP 293 Query: 124 ACREHAVAERPV-GKRMYRCLI 144 C + R V G R + CL+ Sbjct: 294 LCTNTRPSLRMVDGGRGHSCLV 315 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 90.9 bits (224), Expect = 1e-20 Identities = 49/122 (40%), Positives = 71/122 (58%), Gaps = 5/122 (4%) Query: 4 SSALDVSSQKAVIRMLRLLMRERVIKAMIFITHELPLLYHVADDIAVMYAGQLVEKGTAR 63 ++ALDV+ Q ++ +L L RE + ++ ITH L L+ D +AVMYAG +VE+ Sbjct: 193 TTALDVTIQAQIMDLLTQLKREHGL-TLLLITHNLGLVAEYCDRVAVMYAGNIVEEAPVD 251 Query: 64 EVIFDPLHPYSHALMGSILVPDEEFMSSSRTIRTIPGAPPNLKEEIRGCRFADRCPYAFD 123 E+ +PLHPY+ AL+ ++ P ++ + IPG PNL GCRF RCP AFD Sbjct: 252 ELFSNPLHPYTRALIRAVPNP----LAKIENLEHIPGTVPNLITPPPGCRFHPRCPLAFD 307 Query: 124 AC 125 C Sbjct: 308 RC 309 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 90.9 bits (224), Expect = 1e-20 Identities = 54/124 (43%), Positives = 70/124 (56%), Gaps = 10/124 (8%) Query: 4 SSALDVSSQKAVIRMLRLLMRERVIKAMIFITHELPLLYHVADDIAVMYAGQLVEKGTAR 63 ++ALDV+ Q +++ML L RE + +I ITH L + +AD IAVMYAG +VE Sbjct: 184 TTALDVTVQAQILKMLSRL-REELETTIILITHNLAVAAEIADRIAVMYAGHVVEVADVF 242 Query: 64 EVIFDPLHPYSHALMGSILVP--DEEFMSSSRTIRTIPGAPPNLKEEIRGCRFADRCPYA 121 + PLHPY+ L+ SI P DEE I I G PP+L + GCRF RCPY Sbjct: 243 SLFERPLHPYTKGLLKSIPKPHVDEE-------IEPIRGEPPSLADPPPGCRFHPRCPYV 295 Query: 122 FDAC 125 D C Sbjct: 296 MDVC 299 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 85.1 bits (209), Expect = 8e-19 Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 5/122 (4%) Query: 4 SSALDVSSQKAVIRMLRLLMRERVIKAMIFITHELPLLYHVADDIAVMYAGQLVEKGTAR 63 ++ALDV Q ++ +L+ L E+ + ++I ITH+L ++ +A+ + +MY G++ E G + Sbjct: 182 TTALDVVVQAQILNLLKKLAWEKNL-SIILITHDLSVIAELAETVMIMYGGKIAEYGPSD 240 Query: 64 EVIFDPLHPYSHALMGSILVPDEEFMSSSRTIRTIPGAPPNLKEEIRGCRFADRCPYAFD 123 V P HPY+ AL+ +I + + IPG+PP+L+ GCRF RCP AFD Sbjct: 241 AVFTKPQHPYTQALLKAI----PKLRGPIDRLAYIPGSPPDLRNPPPGCRFHPRCPKAFD 296 Query: 124 AC 125 C Sbjct: 297 RC 298 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 84.3 bits (207), Expect = 1e-18 Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 9/139 (6%) Query: 5 SALDVSSQKAVIRMLRLLMRERVIKAMIFITHELPLLYHVADDIAVMYAGQLVEKGTARE 64 S LDVS + ++ +L L RE++ +++FITH+L + ++ D IAVMY G++VE G AR Sbjct: 224 SMLDVSIRAEILELL-LGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDARR 282 Query: 65 VIFDPLHPYSHALMGSILVPDEEFMSSSRTIRTIP--GAPPNLKEEIRGCRFADRC---P 119 +I P+HPY+ AL+ +I PD S+ + +R +P G P+ GCRF RC Sbjct: 283 IIERPIHPYTKALVAAIPEPDP---SNRKKLREVPIKGEIPSAAAIPPGCRFHPRCVEYE 339 Query: 120 YAFDACREHAVAERPVGKR 138 D RE + P KR Sbjct: 340 QDMDRLREMCPVKEPPLKR 358 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 79.3 bits (194), Expect = 4e-17 Identities = 42/120 (35%), Positives = 72/120 (60%), Gaps = 7/120 (5%) Query: 4 SSALDVSSQKAVIRMLRLLMRERVIKAMIFITHELPLLYHVADDIAVMYAGQLVEKGTAR 63 +SALDVS Q ++R+LR L ++ + ++ ITH++ ++ +++ + VMY+G+++E Sbjct: 217 TSALDVSIQAQILRLLRELWKKYGLTYLL-ITHDISVVRYMSSSVVVMYSGKIMESAPKH 275 Query: 64 EVIFDPLHPYSHALMGSILVPDEEFMSSSRTIRTIP--GAPPNLKEEIRGCRFADRCPYA 121 + +PLHPY+ L+ ++ +PD SR I+ G PPN + GCRF RCP A Sbjct: 276 ILFTNPLHPYTKLLLSAVPIPDPR----SRRIKEFKDIGEPPNPAKPPVGCRFVTRCPIA 331 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 77.0 bits (188), Expect = 2e-16 Identities = 52/139 (37%), Positives = 71/139 (51%), Gaps = 7/139 (5%) Query: 5 SALDVSSQKAVIRMLRLLMRERVIKAMIFITHELPLLYHVADDIAVMYAGQLVEKGTARE 64 S +DVS + +++ ++ R R ++ ITH++ + VAD IAVMY G++VE G R Sbjct: 192 SMIDVSMRASILDLIMDYHR-RTGATIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRS 250 Query: 65 VIFDPLHPYSHALMGSILVPDEEFMSSSRTIR-TIPGAPPNLKEEIRGCRFADRCPYAFD 123 VI +P HPY+ A LV +S R R I G P+ GCRF RCP A Sbjct: 251 VIENPRHPYTAA-----LVTSTPSISRRRPPRFPISGEVPSAVAIPPGCRFHPRCPLASS 305 Query: 124 ACREHAVAERPVGKRMYRC 142 CR A G R+Y C Sbjct: 306 LCRSREPALVEEGGRLYAC 324 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 40.4 bits (93), Expect = 2e-05 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 12/104 (11%) Query: 18 MLRLLMRERVIKAM-------IFITHELPLLYHVADDIAVMYAGQLVEKGTAREVIFDPL 70 +LRL MR + K +++TH+ +AD IAVM G++V+ GT EV P Sbjct: 171 LLRLAMRAELKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEVYMRPK 230 Query: 71 HPYSHALMG----SILVPDEEFMSSSRTIRTIPGAPPNLKEEIR 110 H + +G +++ D E + I + PG + EE R Sbjct: 231 HTFVATFIGAPPMNLVECDVESVGEDLWI-SCPGFSRRVPEEAR 273 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 39.3 bits (90), Expect = 5e-05 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 5 SALDVSSQKAVIRMLRLLMRERVIKAMIFITHELPLLYHVADDIAVMYAGQLVEKGTARE 64 S LD ++ ++ L+ L R ++ MI++TH+ +AD + +M G++V+ GT E Sbjct: 167 SHLDFKIRQRLLAELKRLQR-KLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSE 225 Query: 65 VIFDPLHPYSHALMGSILVPDEEFMS 90 V P + Y G + +E ++ Sbjct: 226 VYTRPANVYVATFFGDANIIPKELLT 251 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 151,110 Number of Sequences: 1700 Number of extensions: 5895 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 10 Number of HSP's better than 0.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 11 length of query: 157 length of database: 492,079 effective HSP length: 70 effective length of query: 87 effective length of database: 373,079 effective search space: 32457873 effective search space used: 32457873 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719148|ref|YP_003874680.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (313 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 304,219 Number of Sequences: 1700 Number of extensions: 12789 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 313 length of database: 492,079 effective HSP length: 77 effective length of query: 236 effective length of database: 361,179 effective search space: 85238244 effective search space used: 85238244 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719149|ref|YP_003874681.1| hypothetical protein STHERM_c14680 [Spirochaeta thermophila DSM 6192] (643 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 670,625 Number of Sequences: 1700 Number of extensions: 29707 Number of successful extensions: 78 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78 Number of HSP's gapped (non-prelim): 0 length of query: 643 length of database: 492,079 effective HSP length: 83 effective length of query: 560 effective length of database: 350,979 effective search space: 196548240 effective search space used: 196548240 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719150|ref|YP_003874682.1| hypothetical protein STHERM_c14690 [Spirochaeta thermophila DSM 6192] (511 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 579,906 Number of Sequences: 1700 Number of extensions: 26981 Number of successful extensions: 48 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48 Number of HSP's gapped (non-prelim): 0 length of query: 511 length of database: 492,079 effective HSP length: 81 effective length of query: 430 effective length of database: 354,379 effective search space: 152382970 effective search space used: 152382970 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719151|ref|YP_003874683.1| hypothetical protein STHERM_c14700 [Spirochaeta thermophila DSM 6192] (262 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.132 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 238,445 Number of Sequences: 1700 Number of extensions: 9390 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 262 length of database: 492,079 effective HSP length: 75 effective length of query: 187 effective length of database: 364,579 effective search space: 68176273 effective search space used: 68176273 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719152|ref|YP_003874684.1| hypothetical protein STHERM_c14710 [Spirochaeta thermophila DSM 6192] (429 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 454,843 Number of Sequences: 1700 Number of extensions: 20740 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 429 length of database: 492,079 effective HSP length: 79 effective length of query: 350 effective length of database: 357,779 effective search space: 125222650 effective search space used: 125222650 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719153|ref|YP_003874685.1| transmembrane protein [Spirochaeta thermophila DSM 6192] (245 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 266,804 Number of Sequences: 1700 Number of extensions: 12853 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 245 length of database: 492,079 effective HSP length: 74 effective length of query: 171 effective length of database: 366,279 effective search space: 62633709 effective search space used: 62633709 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719154|ref|YP_003874686.1| hypothetical protein STHERM_c14730 [Spirochaeta thermophila DSM 6192] (548 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.137 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 640,194 Number of Sequences: 1700 Number of extensions: 31384 Number of successful extensions: 75 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75 Number of HSP's gapped (non-prelim): 0 length of query: 548 length of database: 492,079 effective HSP length: 81 effective length of query: 467 effective length of database: 354,379 effective search space: 165494993 effective search space used: 165494993 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719155|ref|YP_003874687.1| hypothetical protein STHERM_c14740 [Spirochaeta thermophila DSM 6192] (334 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 380,297 Number of Sequences: 1700 Number of extensions: 17703 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 334 length of database: 492,079 effective HSP length: 77 effective length of query: 257 effective length of database: 361,179 effective search space: 92823003 effective search space used: 92823003 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719156|ref|YP_003874688.1| glycerol-1-phosphate dehydrogenase [Spirochaeta thermophila DSM 6192] (387 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431088|ref|NP_147296.2| glycerol-1-phosphate dehydrogenase... 115 1e-27 >gi|118431088|ref|NP_147296.2| glycerol-1-phosphate dehydrogenase [Aeropyrum pernix K1] Length = 352 Score = 115 bits (289), Expect = 1e-27 Identities = 86/270 (31%), Positives = 127/270 (47%), Gaps = 28/270 (10%) Query: 98 SGVGMIVAVGSGTLNDICRFVSFVLGIPYVVVATAPSMDGYASSVSPLLVDGKKQTFPAH 157 S + ++ +G G D+ ++ S G +V + T S DG S S L K + PA Sbjct: 88 SRIEVVAGLGGGKSIDVAKYASKRAGSVFVSIPTVASHDGITSPFSSLKGFDKPISRPAK 147 Query: 158 VPLGVFASRRVLQDAPSELIRAGVGDMIGKKTALTDWRLSHGRRGEY---YCPEVASLME 214 P + V+ +AP AG GD+IGK TA+ DWRL+H R EY Y +A L Sbjct: 148 APEAIIIDVDVIAEAPRRYNIAGFGDLIGKYTAVLDWRLAHKLRLEYYGEYAASLALLSA 207 Query: 215 QAVDAALDSLRSGDGTTAVDVTALMEGLVLSGLAMEYVGSSRPASGSEHHLVHYWEYRLL 274 + V + + G T L+E LV SG++M GS+RPASGSEH H L Sbjct: 208 KHVSQYAEEIALG---TREGYRVLLEALVSSGVSMCIAGSTRPASGSEHLFAH-----AL 259 Query: 275 DAGVEPPFFHGSAVGVATLCIAHCYAFMNARLPDLVSDLGLVPPSPSEVHTLLVSSGLKI 334 HG AVGV T+ +A+ + R+ L+ +G P + E Sbjct: 260 HIVARNKPLHGEAVGVGTIMMAYLHGKNWRRIRGLLKTVG-APTNAKE------------ 306 Query: 335 RPGRLGIDGNLLHDSIRHASELRPHRYTIL 364 LG++ + + +++ A+ +RP RYTIL Sbjct: 307 ----LGVEDDEVVEALTIAARIRPERYTIL 332 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 388,323 Number of Sequences: 1700 Number of extensions: 17146 Number of successful extensions: 48 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 1 length of query: 387 length of database: 492,079 effective HSP length: 79 effective length of query: 308 effective length of database: 357,779 effective search space: 110195932 effective search space used: 110195932 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719157|ref|YP_003874689.1| alpha-N-arabinofuranosidase [Spirochaeta thermophila DSM 6192] (496 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 557,617 Number of Sequences: 1700 Number of extensions: 26573 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 0 length of query: 496 length of database: 492,079 effective HSP length: 81 effective length of query: 415 effective length of database: 354,379 effective search space: 147067285 effective search space used: 147067285 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719158|ref|YP_003874690.1| alpha-N-arabinofuranosidase [Spirochaeta thermophila DSM 6192] (501 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 548,493 Number of Sequences: 1700 Number of extensions: 25882 Number of successful extensions: 65 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65 Number of HSP's gapped (non-prelim): 0 length of query: 501 length of database: 492,079 effective HSP length: 81 effective length of query: 420 effective length of database: 354,379 effective search space: 148839180 effective search space used: 148839180 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719159|ref|YP_003874691.1| hypothetical protein STHERM_c14780 [Spirochaeta thermophila DSM 6192] (469 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 426,866 Number of Sequences: 1700 Number of extensions: 17134 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 469 length of database: 492,079 effective HSP length: 80 effective length of query: 389 effective length of database: 356,079 effective search space: 138514731 effective search space used: 138514731 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719160|ref|YP_003874692.1| hypothetical protein STHERM_c14790 [Spirochaeta thermophila DSM 6192] (158 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 159,657 Number of Sequences: 1700 Number of extensions: 7750 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 158 length of database: 492,079 effective HSP length: 70 effective length of query: 88 effective length of database: 373,079 effective search space: 32830952 effective search space used: 32830952 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719161|ref|YP_003874693.1| hypothetical protein STHERM_c14800 [Spirochaeta thermophila DSM 6192] (875 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.302 0.125 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 507,666 Number of Sequences: 1700 Number of extensions: 15791 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 875 length of database: 492,079 effective HSP length: 85 effective length of query: 790 effective length of database: 347,579 effective search space: 274587410 effective search space used: 274587410 T: 11 A: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.7 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719162|ref|YP_003874694.1| hypothetical protein STHERM_c14810 [Spirochaeta thermophila DSM 6192] (350 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 349,150 Number of Sequences: 1700 Number of extensions: 15025 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 350 length of database: 492,079 effective HSP length: 78 effective length of query: 272 effective length of database: 359,479 effective search space: 97778288 effective search space used: 97778288 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719163|ref|YP_003874695.1| hypothetical protein STHERM_c14820 [Spirochaeta thermophila DSM 6192] (374 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.468 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 248,794 Number of Sequences: 1700 Number of extensions: 7176 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 374 length of database: 492,079 effective HSP length: 78 effective length of query: 296 effective length of database: 359,479 effective search space: 106405784 effective search space used: 106405784 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719164|ref|YP_003874696.1| hypothetical protein STHERM_c14830 [Spirochaeta thermophila DSM 6192] (532 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 464,069 Number of Sequences: 1700 Number of extensions: 17775 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 532 length of database: 492,079 effective HSP length: 81 effective length of query: 451 effective length of database: 354,379 effective search space: 159824929 effective search space used: 159824929 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719165|ref|YP_003874697.1| lysine exporter protein [Spirochaeta thermophila DSM 6192] (198 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.140 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 175,783 Number of Sequences: 1700 Number of extensions: 6649 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 198 length of database: 492,079 effective HSP length: 72 effective length of query: 126 effective length of database: 369,679 effective search space: 46579554 effective search space used: 46579554 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719166|ref|YP_003874698.1| hypothetical protein STHERM_c14850 [Spirochaeta thermophila DSM 6192] (256 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 208,550 Number of Sequences: 1700 Number of extensions: 8183 Number of successful extensions: 75 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75 Number of HSP's gapped (non-prelim): 0 length of query: 256 length of database: 492,079 effective HSP length: 75 effective length of query: 181 effective length of database: 364,579 effective search space: 65988799 effective search space used: 65988799 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719167|ref|YP_003874699.1| hypothetical protein STHERM_c14860 [Spirochaeta thermophila DSM 6192] (125 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.140 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 132,771 Number of Sequences: 1700 Number of extensions: 5487 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 125 length of database: 492,079 effective HSP length: 67 effective length of query: 58 effective length of database: 378,179 effective search space: 21934382 effective search space used: 21934382 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719168|ref|YP_003874700.1| minor teichoic acid biosynthesis protein GgaA [Spirochaeta thermophila DSM 6192] (251 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601234|ref|NP_147767.1| glycosyl transferase [Aeropyrum per... 45 2e-06 gi|14602202|ref|NP_147771.1| glycosyl transferase [Aeropyrum per... 42 1e-05 >gi|14601234|ref|NP_147767.1| glycosyl transferase [Aeropyrum pernix K1] Length = 357 Score = 45.1 bits (105), Expect = 2e-06 Identities = 21/47 (44%), Positives = 30/47 (63%) Query: 22 SVIIPAYNEERYIAKTLTHLSREDYPQECLEVIIVENGSSDRTREVV 68 S+I+ +N +YI K L LS DYP+E L+VI V+N S D T ++ Sbjct: 7 SIIVVTHNSSKYIDKLLADLSSLDYPRELLQVIFVDNASWDDTLRLI 53 >gi|14602202|ref|NP_147771.1| glycosyl transferase [Aeropyrum pernix K1] Length = 283 Score = 42.0 bits (97), Expect = 1e-05 Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 2/49 (4%) Query: 22 SVIIPAYNEERYIAKTLTHLSREDYPQECLEVIIVENGSSDRTREVVEE 70 S++IP YN E+ ++ TL + R+ Y +EVIIV+N S+D T ++ E+ Sbjct: 20 SIVIPTYNSEKTLSLTLESIKRQTYKN--IEVIIVDNYSTDGTVKIAEK 66 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.138 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 243,464 Number of Sequences: 1700 Number of extensions: 9956 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 2 length of query: 251 length of database: 492,079 effective HSP length: 75 effective length of query: 176 effective length of database: 364,579 effective search space: 64165904 effective search space used: 64165904 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719169|ref|YP_003874701.1| hypothetical protein STHERM_c14880 [Spirochaeta thermophila DSM 6192] (409 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.146 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 382,154 Number of Sequences: 1700 Number of extensions: 16493 Number of successful extensions: 65 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65 Number of HSP's gapped (non-prelim): 0 length of query: 409 length of database: 492,079 effective HSP length: 79 effective length of query: 330 effective length of database: 357,779 effective search space: 118067070 effective search space used: 118067070 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719170|ref|YP_003874702.1| dihydrolipoyl dehydrogenase [Spirochaeta thermophila DSM 6192] (462 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431550|ref|NP_148088.2| dihydrolipoyl dehydrogenase [Aerop... 272 1e-74 gi|14601420|ref|NP_147957.1| mercuric reductase [Aeropyrum perni... 192 2e-50 gi|118431317|ref|NP_147693.2| thioredoxin reductase [Aeropyrum p... 50 2e-07 >gi|118431550|ref|NP_148088.2| dihydrolipoyl dehydrogenase [Aeropyrum pernix K1] Length = 464 Score = 272 bits (695), Expect = 1e-74 Identities = 167/461 (36%), Positives = 251/461 (54%), Gaps = 12/461 (2%) Query: 4 QYDLVVLGSGPGGYVAAIRASQLGLKTAVVEKDKLGGVCLNIGCIPSKALIHMATLYRQA 63 ++DLVV+G GPGGY AA+RA+Q GL A+VE D LGG C N GCIP+KAL+H A L Sbjct: 3 RFDLVVVGGGPGGYPAAVRAAQEGLNVALVEMDSLGGECTNYGCIPTKALLHPAGLV--- 59 Query: 64 QETLSRTGVKVDTSGFDYEKVFSYSRQVADRLSKGVQFLLKKNKVDVITGEGVLEDPHTV 123 +L+R + D++ + + V +S GV LLK V+V+ G + P V Sbjct: 60 -ASLARLKFVKGSVDVDFKGLMEWVDSVVKGVSNGVSTLLKGYGVEVVKGRAKIR-PGVV 117 Query: 124 RVGDARYTG-KYILVATGSSPRSIPGFEIDEEVVLSSTGALMLKDLPPRIIILGGGAVGM 182 V + G +++A G+SP SIPG E D EVV ++ L L+ P R++I+GGG +G+ Sbjct: 118 EVDGSGSIGYSKLVLALGTSPASIPGLEPDGEVVHNNRTILGLRRKPGRMLIVGGGYIGV 177 Query: 183 EFAYIFNSFGVEVTVVEMLDQVLPFMDHEVVEVLVKEFAKRGXXXXXXXXXXXXXXXDAG 242 E+A GVEVT+VE+LD++LP M + V+ + G + Sbjct: 178 EYATAMARLGVEVTIVELLDRLLPNMQRDFSRVVERRLRAEGVKIHTKSKVEAVERRERY 237 Query: 243 VTLTVEGPEGSRELAAEKLLVSIGRAPNTRGIGLEEIGVQLDERGFVKV-GDYYQTAVEG 301 + V G G E A +LV++GR PNT +GLE++GV+LD+ G+++V G +T V G Sbjct: 238 AVVEVSG-VGKMEYDA--ILVAVGRRPNTGDVGLEKLGVKLDKAGYIQVDGATLETGVPG 294 Query: 302 VYAIGDILPTPQLAHVASKEGEIAVLHMAGRPKEKVLPQEEIPSAVYTEPQVAGFGLTEK 361 VYA GD+ P LAH A + +A AG + +P+ VYT+P++A GLT + Sbjct: 295 VYASGDVTGPPLLAHRAFLQAVVAAERAAG-DSSAAFDAKAVPAVVYTDPELATVGLTLE 353 Query: 362 EAKEKGLSYKTAVFPFRGVGKAVAV-GEADGFVKLLYDPETEEILGAFIVGPEATELVHE 420 EA+ G+ P + + A+ G + F K++YD + ILG + P A+E++ E Sbjct: 354 EARAAGVDAAETRLPLASLPRVGAIEGCRECFAKVVYDRSSRAILGFHVAAPHASEIIAE 413 Query: 421 XXXXXXXXXXXDDISHMVHAHPSLSEGVMEAARMAQGWAIH 461 +D++ +H HPS+SE + E A +A IH Sbjct: 414 AALAIEMGATLEDLALTIHPHPSVSEALKEVAELALERPIH 454 >gi|14601420|ref|NP_147957.1| mercuric reductase [Aeropyrum pernix K1] Length = 461 Score = 192 bits (487), Expect = 2e-50 Identities = 132/458 (28%), Positives = 219/458 (47%), Gaps = 25/458 (5%) Query: 4 QYDLVVLGSGPGGYVAAIRASQLGLKTAVVEKDKLGGVCLNIGCIPSKALIHMATLYRQA 63 +YD++V+G G G+ A + A++ G +V + LGG C+N GC+PSK +++ + R+A Sbjct: 5 EYDIIVIGGGAAGFSAVVAAAEGGASVLLVSEGPLGGTCVNFGCVPSKHVLYNLSTARKA 64 Query: 64 QETLSRTGVKVDTSGFDYEKVFSYSRQVADRLSKG-VQFLLKKNKVDVITGEGVLEDPHT 122 G+K+ S + +R+V++ L K + LL VD + G + P Sbjct: 65 -------GLKISLS-----EALEGARKVSETLRKEKYESLLDSLGVDYLRGRARFKAPGI 112 Query: 123 VRVG--DARYTGKYILVATGSSP--RSIPGFEIDEEVVLSSTGALMLKDLPP----RIII 174 V + RY K ++A G+ IPG + E+ + + PP + + Sbjct: 113 VEADGREVRYR-KAAIIAVGARTWRPPIPGLKEAEKAGRILDNERLFGEGPPPDMESVAV 171 Query: 175 LGGGAVGMEFAYIFNSFGVEVTVVEMLDQVLPFMDHEVVEVLVKEFAKRGXXXXXXXXXX 234 +GG A G+E A IF G++ +++ ++LP + E + + G Sbjct: 172 IGGRAQGVEAAQIFARSGLKTVLLQRSGRLLPRDEPEAGVYMKRVLEGDGVEVRTSARPL 231 Query: 235 XXXXXDAGVTLTVEGPEGSRELAAEKLLVSIGRAPNTRGIGLEEIGVQLDERGFVKVGDY 294 V + E P+G + A + ++ GR P G+GLE +GV++ GF+ V + Sbjct: 232 RVESVRGAVRIDYETPQGPASVEASYIYLATGRKPVLDGLGLENVGVRVSSDGFIVVNEK 291 Query: 295 YQTAVEGVYAIGDILPTPQLAHVASKEGEIAVLHMAGRPKEKVLPQEEIPSAVYTEPQVA 354 A GVYA GD + QL VA++EG +A L+ G E + IP AV+T+P+ A Sbjct: 292 LM-ASPGVYAAGDCIGGIQLEPVAAREGYVAALNALGGNVE--MDYTVIPRAVFTDPEFA 348 Query: 355 GFGLTEKEAKEKGLSYKTAVFPFRGVGKAVAVGEADGFVKLLYDPETEEILGAFIVGPEA 414 GLTE+E K + +A +G GFVK++ DP T+++ G ++ P+A Sbjct: 349 SVGLTERELARKLGVCACRTVDITQIPRARIMGYETGFVKMVVDPRTKKVAGVHMMAPQA 408 Query: 415 TELVHEXXXXXXXXXXXDDISHMVHAHPSLSEGVMEAA 452 E +HE DD+ +H PS+SEG+ AA Sbjct: 409 AEAIHEAAFILKAGMTVDDVIDTIHIFPSISEGIKYAA 446 >gi|118431317|ref|NP_147693.2| thioredoxin reductase [Aeropyrum pernix K1] Length = 337 Score = 49.7 bits (117), Expect = 2e-07 Identities = 68/313 (21%), Positives = 119/313 (38%), Gaps = 46/313 (14%) Query: 4 QYDLVVLGSGPGGYVAAIRASQLGLKTAVVEKDKLGGVCLN--IGCIPSKALIHMATLYR 61 +YD V++G+GP G AAI ++ + T +V D G + L I P + + L Sbjct: 18 EYDTVIVGAGPAGLSAAIYTTRFLMSTLIVSMDVGGQLNLTNWIDDYPGMGGLEASKLVE 77 Query: 62 QAQETLSRTGVKVDTSGFDYEKVFSYSRQVADRLSKGVQFLLKKNKVDVITGEGVLEDPH 121 + G K+ V + DRL G FL++ ++ Sbjct: 78 SFKSHAEMFGAKI---------VTGVQVKTVDRLDDG-WFLVRGSR-------------- 113 Query: 122 TVRVGDARYTGKYILVATGSSPRSIPGFEIDEEVVLSSTGALMLKDLP-----PRIIILG 176 + +++A GS R + G + E+ + D P ++++G Sbjct: 114 -----GLEVKARTVILAVGSRRRKL-GVPGEAELAGRGVSYCSVCDAPLFKGKDAVVVVG 167 Query: 177 GGAVGMEFAYIFNSFGVEVTVVEMLD--QVLPFMDHEVVEVLVKEFAKRGXXXXXXXXXX 234 GG +E A + + + +V +V + PF E + EF Sbjct: 168 GGDSALEGALLLSGYVGKVYLVHRRQGFRAKPFYVEEARKKPNIEFI---LDSIVTEIRG 224 Query: 235 XXXXXDAGVTLTVEGPEGSRELAAEKLLVSIGRAPNTRGIGLEEIGVQLDERGFVKVGDY 294 V V G E +EL + + + IG P E IG++ D G V V ++ Sbjct: 225 RDRVESVVVKNKVTGEE--KELRVDGIFIEIGSEPPKE--LFEAIGLETDSMGNVVVDEW 280 Query: 295 YQTAVEGVYAIGD 307 +T++ G++A GD Sbjct: 281 MRTSIPGIFAAGD 293 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.137 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 480,107 Number of Sequences: 1700 Number of extensions: 22871 Number of successful extensions: 137 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 121 Number of HSP's gapped (non-prelim): 3 length of query: 462 length of database: 492,079 effective HSP length: 80 effective length of query: 382 effective length of database: 356,079 effective search space: 136022178 effective search space used: 136022178 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719171|ref|YP_003874703.1| hypothetical protein STHERM_c14900 [Spirochaeta thermophila DSM 6192] (70 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.337 0.148 0.491 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,566 Number of Sequences: 1700 Number of extensions: 1630 Number of successful extensions: 5 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 70 length of database: 492,079 effective HSP length: 41 effective length of query: 29 effective length of database: 422,379 effective search space: 12248991 effective search space used: 12248991 T: 11 A: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719172|ref|YP_003874704.1| soluble cytochrome b558 [Spirochaeta thermophila DSM 6192] (133 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 116,058 Number of Sequences: 1700 Number of extensions: 4407 Number of successful extensions: 7 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 133 length of database: 492,079 effective HSP length: 68 effective length of query: 65 effective length of database: 376,479 effective search space: 24471135 effective search space used: 24471135 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719173|ref|YP_003874705.1| hypothetical protein STHERM_c14920 [Spirochaeta thermophila DSM 6192] (762 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431463|ref|NP_147955.2| cation-transporting ATPase [Aeropy... 350 7e-98 gi|118431927|ref|NP_148699.2| cation-transporting P-type ATPase ... 177 6e-46 >gi|118431463|ref|NP_147955.2| cation-transporting ATPase [Aeropyrum pernix K1] Length = 838 Score = 350 bits (898), Expect = 7e-98 Identities = 213/592 (35%), Positives = 308/592 (52%), Gaps = 15/592 (2%) Query: 171 SLVFFYGGWPFLVGGRDEIQRRQPGMMTLIALAISVAYVYSTAVVFGL-SGKFFFWELAT 229 ++V G FLVG ++ PGM L++L Y YS A + G+ ++ + Sbjct: 201 AIVLLGPGRRFLVGAYRSLKNGTPGMDALVSLGTLSIYFYSLAATLNIIRGELYYEGIGL 260 Query: 230 LIDVMLLGHWIEMASVLGASRALEKLAQLLPDTAHKVEGEEVVDVRTSELAAGDLVLVKA 289 +I +L+G +IE G +A+E LA+L P A + G V+V SE+ GDLV+V+ Sbjct: 261 IIGFVLIGRYIESKVKKGTGKAVENLAKLKPQKARVLRGRREVEVDVSEVKPGDLVVVRQ 320 Query: 290 GEKIPADGEVVKGTSYVNESMLTGESVPVKKGPGDGVIGGSVNGDGVLTVRITGTGEDSY 349 GE+IP DG VV+G +YV+ES+ TGE +PV+K PGD V+ GS+ G L + T T D+ Sbjct: 321 GERIPVDGYVVQGKAYVDESVFTGEPIPVEKKPGDLVLAGSMVSSGWLHISATRTSGDTA 380 Query: 350 LQKVIHLVEEAQRTKSKTQRLADRAAQWLTFIAIGAGSLTFVLWMVFTGDLAAAIERMVT 409 + ++ L+ +Q K QRLADR + + + SLTF W+ F G L AI R + Sbjct: 381 IDRIARLIAYSQAGKMDIQRLADRVSGMFFWAVLCIASLTFTAWL-FLGGLETAIIRAAS 439 Query: 410 VMVITCPHXXXXXXXXXXXXSTSLSARNGLLIRNRTAFENARKISTVVFDKTGTLTXXXX 469 V +I+CP ++AR G+L+RN AFE K S VVFDKTGTLT Sbjct: 440 VFLISCPCALGLATPTASSAGVGVAARAGILVRNVVAFERLAKASIVVFDKTGTLTLGMP 499 Query: 470 XXXXXXXXXXXXXXXXXXXXXXXRN-SEHPVARGIVEE-AEKRGLAPLPVEDFSXXXXXX 527 SEHP+AR I++ E G P ++ Sbjct: 500 RVAAVEAVDGYSEKEILELAASAEKWSEHPLARAIIDAYMEVAGRGPEDPDNAEVFPGMG 559 Query: 528 XXXXXXXXXIALLSRRALEEGGYTVP--------ETEGSHIGTLVYVVEEGKVRGAVVLA 579 + + +R+ ++ G+ V E S T V+V +GK G + + Sbjct: 560 VYAEVGGRSVVVGNRKIMD--GFEVDIKTLEKIAEEWQSRGATTVFVAIDGKPAGVIAIR 617 Query: 580 DRIRPESREAVRTLQKKGIRCWMLTGDNRKVAEAVAKELGLDGVFAEVLPHEKQEKVKEL 639 D RPE+RE V L+K G++ MLTGD+ A A+A+EL ++ A V P K E ++EL Sbjct: 618 DEPRPEARETVDWLEKLGLKVMMLTGDSEGTARAIARELDIEEYRAGVSPEGKAEVIREL 677 Query: 640 QAKGEFVAMTGDGINDAPALAQADVGIAIGSGTDIAAETADIILVHDSPADVAALIEFGR 699 Q KG V M GDG+NDAP+LA+ADVGIA+ + TD++ E DI+L+ V + R Sbjct: 678 QKKGHVVVMVGDGVNDAPSLARADVGIAVANATDVSVEAGDIVLIKGDLRRVPLAVVISR 737 Query: 700 ATYRKMVQNLLWATGYNVVAIPLAAGVLYPLTGLLLSPAVGAALMSLSTVIV 751 TY + NL WA YNV IP+AAG + G+ L P + AA M+LS++ V Sbjct: 738 KTYNTIKFNLFWAFIYNVTLIPVAAGA-FAWAGITLRPELAAAAMALSSITV 788 >gi|118431927|ref|NP_148699.2| cation-transporting P-type ATPase [Aeropyrum pernix K1] Length = 585 Score = 177 bits (450), Expect = 6e-46 Identities = 143/509 (28%), Positives = 228/509 (44%), Gaps = 23/509 (4%) Query: 248 ASRALEKLAQLLPDTAHKVEGEEVVDVRTSELAAGDLVLVKAGEKIPADGEVVKGTSYVN 307 A R LE+ +L+P V + +V S++ GD+VLV+ GE +P DG V+ T + Sbjct: 90 ALRRLEEAKRLIPKRVRVVRDGSIEEVDASQVKPGDVVLVRKGEAVPVDG-VLLDTGVFD 148 Query: 308 ESMLTGESVPVKKGPGDGVIGGSVNGDGVLTVRITGTGEDSYLQKVIHLVEEAQRTKSKT 367 ++TGES PV G + G++N + V+ + +S +Q+++ E R K T Sbjct: 149 LRLITGESEPVTVEGGRAIESGAINVGQPVKVKAVKSPLESTIQRIVSSALELLREKGAT 208 Query: 368 QRLADRAAQWLTFIAIGAGSLTFVLWMVFTGDLAAAIERMVTVMVITCPHXXXXXXXXXX 427 QRL DR A ++ I IGA F+ + G E+ V +++ CP Sbjct: 209 QRLIDRLAPYMIVIVIGA----FIAAYITLGP-----EKSVVLLLAGCPSAFIIASSAAT 259 Query: 428 XXSTSLSARNGLLIRNRTAFENARKISTVVFDKTGTLTXXXX--XXXXXXXXXXXXXXXX 485 S + A G++ R + E A KI VV DKTGT+T Sbjct: 260 SYSIATLATRGIVARGGRSLEAAGKIKAVVLDKTGTITMGTLKPSRVVVLRGAASQDGLL 319 Query: 486 XXXXXXXRNSEHPVARGIVEEAEKRGLAPLPVEDFSXXXXXXXXXXXXXXXIALLSRRAL 545 S HP++ I G VE + L S R L Sbjct: 320 NLVAAAASTSLHPLSIAIARRWRPMG----NVEKVEEVPGRGLRAVVSGRTLLLGSERFL 375 Query: 546 EEG-GYTVPETEGSHIGTLVYVVEEGKVRGAVVLADRIRPESREAVRTLQKKGIRCWMLT 604 EE GY + +V +G A+ +++ + +++ A+ +++ G+ + + Sbjct: 376 EEEVGYRPENPCVDEVPVFAHV--DGTTL-AICMSEEVDEKTKAAINEMKRMGLNLVLAS 432 Query: 605 GDNRKVAEAVAKELGLDGVFAEVLPHEKQEKVKELQAKGEFVAMTGDGINDAPALAQADV 664 GD R E +A+ELG+D AE+ P +K E V +++ K + V+M GDG+ND ALA +D+ Sbjct: 433 GDRRNKVEKIARELGIDEYHAELKPEDKLEIVSKVREKYDPVSMIGDGVNDLEALAASDL 492 Query: 665 GIAIGSGTDIAAETADIILVHDSPADVAALIEFGRATYRKMVQNLLWATGYNVVAIPLAA 724 G+A+G+ D AD +LV + AD L GR+ + L+ AT + I L Sbjct: 493 GVAVGN-IDAVRNLADAVLV-NGVADAPRLYRMGRSYLAGLKAGLVAATIVKLAVIILGI 550 Query: 725 GVLYPLTGLLLSPAVGAALMSLSTVIVAV 753 G PL + L G+ ++ S VAV Sbjct: 551 GGSIPLWLVALLGDDGSTIIG-SVAAVAV 578 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 648,633 Number of Sequences: 1700 Number of extensions: 28181 Number of successful extensions: 139 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 129 Number of HSP's gapped (non-prelim): 2 length of query: 762 length of database: 492,079 effective HSP length: 84 effective length of query: 678 effective length of database: 349,279 effective search space: 236811162 effective search space used: 236811162 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719174|ref|YP_003874706.1| hypothetical protein STHERM_c14930 [Spirochaeta thermophila DSM 6192] (207 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601700|ref|NP_148241.1| hypothetical protein APE_1889 [Aero... 42 9e-06 gi|118430939|ref|NP_147054.2| methyltransferase [Aeropyrum perni... 42 1e-05 >gi|14601700|ref|NP_148241.1| hypothetical protein APE_1889 [Aeropyrum pernix K1] Length = 224 Score = 42.4 bits (98), Expect = 9e-06 Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 15/124 (12%) Query: 24 EAWVEE-RLFAPWRRETLSQV----SGKVLEIGVGTGKNLPYYPEGVEL-VGIDLSPKML 77 + W EE RL A +T+S+ +LE+GVGTG ++ V G+D S ML Sbjct: 22 DKWYEENRLLAANEAKTVSRALEGSPRPLLEVGVGTG----FFASIVGADAGLDPSLGML 77 Query: 78 ERAKARAEKLSREVTLLEMDAQELSFPPATFDFVVGTFVLCSIPDPVRALREAVRVLKPG 137 RA+ R L L+ + + F F + LC DP LRE RVL G Sbjct: 78 RRARERGIPL-----LVAGVGERMPFRSRVFGSALIVVTLCFADDPQELLREVWRVLAWG 132 Query: 138 GRLI 141 G L+ Sbjct: 133 GVLV 136 >gi|118430939|ref|NP_147054.2| methyltransferase [Aeropyrum pernix K1] Length = 189 Score = 41.6 bits (96), Expect = 1e-05 Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Query: 45 GKVLEIGVGTGKNLPYYPEGVELVGIDL------SPKMLERAKARAEKL--SREVTLLEM 96 G+VL+ G GTG L Y L +DL SP ML A+ R L + LE Sbjct: 47 GRVLDAGCGTGLLLEYMASYGSLDAVDLFTCLDYSPCMLSIARFRIGVLCGNGSCIALEG 106 Query: 97 DAQELSFPPATFDFVVGTFVLCSIPDPVRALREAVRV 133 + ++L F FD V VL + D RA++E +RV Sbjct: 107 NVEKLPFGSGVFDTVYSFTVLDLVDDLWRAVKELIRV 143 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 205,769 Number of Sequences: 1700 Number of extensions: 9052 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 2 length of query: 207 length of database: 492,079 effective HSP length: 73 effective length of query: 134 effective length of database: 367,979 effective search space: 49309186 effective search space used: 49309186 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719175|ref|YP_003874707.1| hypothetical protein STHERM_c14940 [Spirochaeta thermophila DSM 6192] (130 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 128,345 Number of Sequences: 1700 Number of extensions: 5352 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 130 length of database: 492,079 effective HSP length: 67 effective length of query: 63 effective length of database: 378,179 effective search space: 23825277 effective search space used: 23825277 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719176|ref|YP_003874708.1| hypothetical protein STHERM_c14950 [Spirochaeta thermophila DSM 6192] (97 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,121 Number of Sequences: 1700 Number of extensions: 1507 Number of successful extensions: 0 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 97 length of database: 492,079 effective HSP length: 63 effective length of query: 34 effective length of database: 384,979 effective search space: 13089286 effective search space used: 13089286 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719177|ref|YP_003874709.1| hypothetical protein STHERM_c14960 [Spirochaeta thermophila DSM 6192] (311 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.142 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 273,842 Number of Sequences: 1700 Number of extensions: 11465 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 311 length of database: 492,079 effective HSP length: 77 effective length of query: 234 effective length of database: 361,179 effective search space: 84515886 effective search space used: 84515886 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719178|ref|YP_003874710.1| hypothetical protein STHERM_c14970 [Spirochaeta thermophila DSM 6192] (748 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 618,148 Number of Sequences: 1700 Number of extensions: 25135 Number of successful extensions: 103 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103 Number of HSP's gapped (non-prelim): 0 length of query: 748 length of database: 492,079 effective HSP length: 84 effective length of query: 664 effective length of database: 349,279 effective search space: 231921256 effective search space used: 231921256 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719179|ref|YP_003874711.1| hypothetical protein STHERM_c14980 [Spirochaeta thermophila DSM 6192] (216 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 196,815 Number of Sequences: 1700 Number of extensions: 7606 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 216 length of database: 492,079 effective HSP length: 73 effective length of query: 143 effective length of database: 367,979 effective search space: 52620997 effective search space used: 52620997 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719180|ref|YP_003874712.1| heavy metal-binding protein [Spirochaeta thermophila DSM 6192] (151 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.128 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 147,839 Number of Sequences: 1700 Number of extensions: 5375 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 151 length of database: 492,079 effective HSP length: 69 effective length of query: 82 effective length of database: 374,779 effective search space: 30731878 effective search space used: 30731878 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719181|ref|YP_003874713.1| transporter [Spirochaeta thermophila DSM 6192] (820 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431463|ref|NP_147955.2| cation-transporting ATPase [Aeropy... 368 e-103 gi|118431927|ref|NP_148699.2| cation-transporting P-type ATPase ... 108 4e-25 >gi|118431463|ref|NP_147955.2| cation-transporting ATPase [Aeropyrum pernix K1] Length = 838 Score = 368 bits (944), Expect = e-103 Identities = 261/819 (31%), Positives = 387/819 (47%), Gaps = 49/819 (5%) Query: 16 LDIEGMSCTSCAQRVKKALFSREGVREAEVDFPSHRAKVVVE-GAVAMEELLKAVEEAGY 74 L I+GM C +C V+KAL S GV EA D + A + E G+V + +++KA+ GY Sbjct: 11 LSIKGMHCATCGLTVEKALRSLPGVVEASADPVTGEAVIAYEPGSVRLSDVVKAIRSVGY 70 Query: 75 RARLAEVGEVAVKTYRVEGMSCTSCAQRVKRALEKVEGVQEAEVSFASGEARXXXXXXXX 134 LAE RV MS + V+ L K++GV E S + Sbjct: 71 DVVLAEA------VIRVPSMSSIDDERVVEETLLKMKGVAEVYASHTNKTVVVRYNPHAT 124 Query: 135 XXXXA-HAVEEAGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGPVAVLMVMRMFFGLSL 193 A+ +AGY + +V + L Sbjct: 125 KPEEVLEALRKAGYKAEMAEGKSLVEAEAEEERRLLLDGLIS---ITASIVYYILLALER 181 Query: 194 LPGELTSW--LEXXXXXXXXXXXXWPILRSTWYAFRHLSFT---MDSLIGIGALASLATG 248 L G + L P R A+R L MD+L+ +G L+ Sbjct: 182 LAGVEAAGAVLPYYGAVVFAIVLLGPGRRFLVGAYRSLKNGTPGMDALVSLGTLSIYFYS 241 Query: 249 VLRKAGVEIEDFSLVG-AMILSIHLIGNYLKLVATGRASQAIRRLLELGAKVAHRIREDG 307 + + + G +I+ LIG Y++ +A+ L +L + A +R Sbjct: 242 LAATLNIIRGELYYEGIGLIIGFVLIGRYIESKVKKGTGKAVENLAKLKPQKARVLRGRR 301 Query: 308 QIEDVPVQALRKGDLVLVRPGEKIPSDGVIVEGHTAVDESIATGESVPVDRGPGDQVIGA 367 ++E V V ++ GDLV+VR GE+IP DG +V+G VDES+ TGE +PV++ PGD V+ Sbjct: 302 EVE-VDVSEVKPGDLVVVRQGERIPVDGYVVQGKAYVDESVFTGEPIPVEKKPGDLVLAG 360 Query: 368 TVNQQGAITVRIEKVGKETFLSQVARMVQEAQASKVPIQEFADRVTAVFVPVVLSISAAT 427 ++ G + + + +T + ++AR++ +QA K+ IQ ADRV+ +F VL I++ T Sbjct: 361 SMVSSGWLHISATRTSGDTAIDRIARLIAYSQAGKMDIQRLADRVSGMFFWAVLCIASLT 420 Query: 428 FVVWLLFPEALGEVVRWAAGFLPWVDPSRGVVSMALFAAIATLVIACPCALGLATPTALM 487 F WL G + A+ A + +I+CPCALGLATPTA Sbjct: 421 FTAWLFL----------------------GGLETAIIRAASVFLISCPCALGLATPTASS 458 Query: 488 VGMGLGAEHGILIRSGKAIQIAQSVQDVVFDKTGTLTEGKPRVVGVWAPGG--EEELARL 545 G+G+ A GIL+R+ A + VVFDKTGTLT G PRV V A G E+E+ L Sbjct: 459 AGVGVAARAGILVRNVVAFERLAKASIVVFDKTGTLTLGMPRVAAVEAVDGYSEKEILEL 518 Query: 546 LSAVESASEHPLARAVC-AWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQEWLX 604 ++ E SEHPLARA+ A+ ++ + Sbjct: 519 AASAEKWSEHPLARAIIDAYMEVAGRGPEDPDNAEVFPGMGVYAEVGGRSVVVGNRKIMD 578 Query: 605 XXXXXXXXXXXXXXXXXXXXXTVVWVAQDGSLVGLVSLADTLKPSSKEAVEALKELGIRC 664 T V+VA DG G++++ D +P ++E V+ L++LG++ Sbjct: 579 GFEVDIKTLEKIAEEWQSRGATTVFVAIDGKPAGVIAIRDEPRPEARETVDWLEKLGLKV 638 Query: 665 IMLTGDNERAARAIASQVGIDEVRARLLPQDKIRVIRELQAQGRVVAMVGDGINDAPALT 724 +MLTGD+E ARAIA ++ I+E RA + P+ K VIRELQ +G VV MVGDG+NDAP+L Sbjct: 639 MMLTGDSEGTARAIARELDIEEYRAGVSPEGKAEVIRELQKKGHVVVMVGDGVNDAPSLA 698 Query: 725 QADVXXXXXXXXXXXXESADITLVSENMLGVPRAIGLSRATFRKIRQNLFWAFFYNVIAI 784 +ADV E+ DI L+ ++ VP A+ +SR T+ I+ NLFWAF YNV I Sbjct: 699 RADVGIAVANATDVSVEAGDIVLIKGDLRRVPLAVVISRKTYNTIKFNLFWAFIYNVTLI 758 Query: 785 PIAVLGL------LHPVIAEIAMAISSVNVVTNSLRLRR 817 P+A L P +A AMA+SS+ V + S RL + Sbjct: 759 PVAAGAFAWAGITLRPELAAAAMALSSITVTSISYRLSK 797 >gi|118431927|ref|NP_148699.2| cation-transporting P-type ATPase [Aeropyrum pernix K1] Length = 585 Score = 108 bits (271), Expect = 4e-25 Identities = 86/300 (28%), Positives = 138/300 (46%), Gaps = 38/300 (12%) Query: 268 LSIHLIGNYLKLVATGRASQAIRRLLELGAKVAHRIR--EDGQIEDVPVQALRKGDLVLV 325 L I L+ ++ + + A+RRL E + R+R DG IE+V ++ GD+VLV Sbjct: 70 LIIMLLYSFAETLEAQVEKLALRRLEEAKRLIPKRVRVVRDGSIEEVDASQVKPGDVVLV 129 Query: 326 RPGEKIPSDGVIVEGHTAV-DESIATGESVPVDRGPGDQVIGATVNQQGAITVRIEKVGK 384 R GE +P DGV+++ T V D + TGES PV G + +N + V+ K Sbjct: 130 RKGEAVPVDGVLLD--TGVFDLRLITGESEPVTVEGGRAIESGAINVGQPVKVKAVKSPL 187 Query: 385 ETFLSQVARMVQEAQASKVPIQEFADRVTAVFVPVVLSISAATFVVWLLFPEALGEVVRW 444 E+ + ++ E K Q DR+ + +V+ A ++ Sbjct: 188 ESTIQRIVSSALELLREKGATQRLIDRLAPYMIVIVIGAFIAAYIT-------------- 233 Query: 445 AAGFLPWVDPSRGVVSMALFAAIATLVIACPCALGLATPTALMVGMGLGAEHGILIRSGK 504 + P + VV L+ CP A +A+ A + A GI+ R G+ Sbjct: 234 -------LGPEKSVV---------LLLAGCPSAFIIASSAATSYSIATLATRGIVARGGR 277 Query: 505 AIQIAQSVQDVVFDKTGTLTEG--KP-RVVGVWAPGGEEELARLLSAVESASEHPLARAV 561 +++ A ++ VV DKTGT+T G KP RVV + ++ L L++A S S HPL+ A+ Sbjct: 278 SLEAAGKIKAVVLDKTGTITMGTLKPSRVVVLRGAASQDGLLNLVAAAASTSLHPLSIAI 337 Score = 72.4 bits (176), Expect = 4e-14 Identities = 41/164 (25%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 628 VWVAQDGSLVGLVSLADTLKPSSKEAVEALKELGIRCIMLTGDNERAARAIASQVGIDEV 687 V+ DG+ + + +++ + +K A+ +K +G+ ++ +GD IA ++GIDE Sbjct: 393 VFAHVDGTTLA-ICMSEEVDEKTKAAINEMKRMGLNLVLASGDRRNKVEKIARELGIDEY 451 Query: 688 RARLLPQDKIRVIRELQAQGRVVAMVGDGINDAPALTQADVXXXXXXXXXXXXESADITL 747 A L P+DK+ ++ +++ + V+M+GDG+ND AL +D+ AD L Sbjct: 452 HAELKPEDKLEIVSKVREKYDPVSMIGDGVNDLEALAASDL-GVAVGNIDAVRNLADAVL 510 Query: 748 VSENMLGVPRAIGLSRATFRKIRQNLFWAFFYNVIAIPIAVLGL 791 V+ + PR + R+ ++ L A ++ + + +LG+ Sbjct: 511 VN-GVADAPRLYRMGRSYLAGLKAGLVAA---TIVKLAVIILGI 550 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 701,948 Number of Sequences: 1700 Number of extensions: 29151 Number of successful extensions: 163 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 150 Number of HSP's gapped (non-prelim): 7 length of query: 820 length of database: 492,079 effective HSP length: 85 effective length of query: 735 effective length of database: 347,579 effective search space: 255470565 effective search space used: 255470565 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719182|ref|YP_003874714.1| oligo-1,6-glucosidase [Spirochaeta thermophila DSM 6192] (546 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 645,322 Number of Sequences: 1700 Number of extensions: 31073 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 0 length of query: 546 length of database: 492,079 effective HSP length: 81 effective length of query: 465 effective length of database: 354,379 effective search space: 164786235 effective search space used: 164786235 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719183|ref|YP_003874715.1| transporter [Spirochaeta thermophila DSM 6192] (299 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 192 1e-50 gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum... 95 2e-21 gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyru... 79 1e-16 gi|14601089|ref|NP_147615.1| spermidine/putrescine ABC transport... 56 1e-09 gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease... 55 2e-09 gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 54 5e-09 gi|118431570|ref|NP_148130.2| ABC transporter permease [Aeropyru... 40 5e-05 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 192 bits (487), Expect = 1e-50 Identities = 95/299 (31%), Positives = 170/299 (56%), Gaps = 19/299 (6%) Query: 1 MREMSTVRRVGMGLVLAVLCTVWTIPTLGLFITSLRPREEATRSGWWTVFSSPGELTLEN 60 +R++ V V + L+ VW +P +GLF+ S+RP E GWW + + T++N Sbjct: 7 LRQVLRVDVVLINLLAWGFALVWLLPFIGLFMVSVRPYGEVIVKGWWNIVDAT--FTMDN 64 Query: 61 YRQVLAGADYSYTTRDGRKVTVRGDNMASAFLNSLAVTVPSVIIPIFLAALAAYGFAWLE 120 Y + + YS ++ ++NSL V +P+ +IP+ A+ AAYGF+ Sbjct: 65 YIKAWSYDPYS---------------VSGGYINSLIVALPATVIPVAAASFAAYGFSRFS 109 Query: 121 FPGRKLLFTLIVSLLVVPLQVALIPILRDYQKIGLNGTFLGIWLAHTGFGLPLATYLLFN 180 FP + LF + + L+ +P Q+ ++P+ + +GL TF GI L H+ +G+ + + N Sbjct: 110 FPLKSYLFLVTILLMALPQQIVVVPLFLLLKNLGLINTFPGIILVHSAWGMAWIIFFMKN 169 Query: 181 YISTIPRSIIESSLIDGADHFQIFTRLIVPLSAPALASFAIFQFLWVWNDLLVALVFLSG 240 + +PR + E++ +DGA F+IF ++++P+S P + S ++ QF WVW+ L+FL Sbjct: 170 FFDILPREVEEAARVDGASDFRIFYKIVLPMSLPGILSASVLQFTWVWSSFFFELIFL-- 227 Query: 241 VGQNMEVLTQRLLNMVGTRGQNWHLLTSGAFVTMLLPVIVFLGLQKYFVRGLMEGSIKG 299 + + V+TQR+ NM GT +W L+ +G+ M +P+ V++ LQ+Y++RG + + KG Sbjct: 228 IDPSKWVITQRIANMKGTYLVDWGLIAAGSVFAMAVPLAVYMLLQRYYIRGFVGWAAKG 286 >gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum pernix K1] Length = 270 Score = 95.1 bits (235), Expect = 2e-21 Identities = 50/147 (34%), Positives = 78/147 (53%) Query: 90 AFLNSLAVTVPSVIIPIFLAALAAYGFAWLEFPGRKLLFTLIVSLLVVPLQVALIPILRD 149 AFL S+AV +V I L Y A FPGR + I++ + P+ V + +L+ Sbjct: 68 AFLRSVAVGAMTVGISFLLGLPGGYALARYVFPGRDAVKLAIIATRMFPIIVISVSLLKT 127 Query: 150 YQKIGLNGTFLGIWLAHTGFGLPLATYLLFNYISTIPRSIIESSLIDGADHFQIFTRLIV 209 + +GLN T +G+ LAHT LP + + IPR + E+ +I G +F R+ + Sbjct: 128 FFNLGLNDTLIGLALAHTAMALPFVVIITGSIFGGIPRDLEEAGMIFGLSSIMVFLRITL 187 Query: 210 PLSAPALASFAIFQFLWVWNDLLVALV 236 PL+AP L + +F FL WN++ +A V Sbjct: 188 PLAAPGLTAAGMFTFLLSWNEVFMASV 214 >gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyrum pernix K1] Length = 302 Score = 79.0 bits (193), Expect = 1e-16 Identities = 67/252 (26%), Positives = 111/252 (44%), Gaps = 19/252 (7%) Query: 57 TLENYRQVLAGADYSYTTRDGRKVTVRGDNMASAFLNSLAVTVPSVIIPIFLAALAAYGF 116 TL+N+ L G +Y T + N+ L +L V V + ++ LAAY Sbjct: 61 TLDNWIMFLRG-QITYATGGLER------NVVEMTLVTLTVAVGVALTATLVSLLAAYSI 113 Query: 117 AWLEFPGRKLLFTLIVSLLVVPLQVALIPILRDYQKIGLNGTFLG--------IWLAHTG 168 + +EF GR + ++ L P +I + ++ IG LG I LA Sbjct: 114 SRMEFKGRGVFTAGLIMLHAFPGVALIIGVYMIFRIIGDVLGVLGEEFYAIAYIILARAA 173 Query: 169 FGLPLATYLLFNYISTIPRSIIESSLIDGADHFQIFTRLIVPLSAPALASFAIFQFLWVW 228 +P+A +L + IP + S+L+DGA +++ ++VPL P +A+ IF FL W Sbjct: 174 LEVPMAIWLFKGFFDKIPWELEWSALVDGASRVRVWWSILVPLVKPGIAAVLIFTFLAGW 233 Query: 229 NDLLVALVFLSGVGQNMEVLTQRLLNMVGTRGQNWHL-LTSGAFVTMLLPVIVFLGLQKY 287 + + VFL G + + + +N+ L + + A LLP IVF L + Sbjct: 234 EEFIYFYVFLKPFGIDS---LPTFIEEIVAAAENYQLTIIAAAGTFYLLPTIVFFVLTQR 290 Query: 288 FVRGLMEGSIKG 299 + G +KG Sbjct: 291 LLLEAYSGGLKG 302 >gi|14601089|ref|NP_147615.1| spermidine/putrescine ABC transporter permease [Aeropyrum pernix K1] Length = 257 Score = 56.2 bits (134), Expect = 1e-09 Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 20/194 (10%) Query: 93 NSLAVTVPSVIIPIFLAALAAYGFAWLEFPGRKLLFTL-------IVSLLVVPLQVALIP 145 NS AV + + + LA + +Y A LE GR+ + L IV +L+ L + L+ Sbjct: 61 NSAAVAAATALAVMLLALVPSYYIA-LEAGGRERIVLLALFVSPFIVDVLLRTLSIKLVL 119 Query: 146 ILRDYQKIGLNGTFLGIWLAHTGFGLPLATYLLFNYISTIPRSIIESSLIDGADHFQIFT 205 L K G TF+G+ + LPL F +S + RS++E++ GA +++ Sbjct: 120 TLVGV-KPGWTATFIGLVYEN----LPLGILFAFAGVSGVSRSLVEAARTLGAGRLEVYR 174 Query: 206 RLIVPLSAPALASFAIFQFLWVWNDLLVALVFLSGVGQNMEVLTQRLLNMVGTRGQNWHL 265 ++ PL+ P LA+ + FL + D +V + G + L L+ G W L Sbjct: 175 SVVAPLALPWLAAGFVVVFLISFTDYVVPSLLGGTTGFTVGSLIYHLI----LSGDRWDL 230 Query: 266 LTSGAFVTMLLPVI 279 G+ VT+++ ++ Sbjct: 231 ---GSAVTLMVTLL 241 >gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease ModB [Aeropyrum pernix K1] Length = 261 Score = 55.1 bits (131), Expect = 2e-09 Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 15/202 (7%) Query: 94 SLAVTVPSVIIPIFLAALAAYGFAWLEFPGRKLLFTLIVSLLVVP---LQVALIPILRDY 150 SL + S ++ + LA AY A E +L+ L + LL +P L A + + Y Sbjct: 51 SLGSSTISSVLAVTLATAPAYAMARQEGRLTRLISQLHLLLLSIPPVGLGTAALILFTRY 110 Query: 151 QKIGLNGTFLGIW-------LAHTGFGLPLATYLLFNYISTIPRSIIESSLIDGADHFQI 203 + LG++ LA P+A +L S +PR + E++ GA QI Sbjct: 111 PPLNSISETLGLFFSPKAVILAQLLVTTPIAVSMLTGVFSMVPRELEEAAEAYGAGRLQI 170 Query: 204 FTRLIVPLSAPALASFAIFQFLWVWNDLLVALVFLSGVGQNMEVLTQRLLNMVGTRGQNW 263 R+++PLS P + S F + LV + E L L N + Sbjct: 171 LIRIVLPLSLPGILSALAVTFFRALGEFGATLVLAGNIPGRTETLPLALYNAISLA---- 226 Query: 264 HLLTSGAFVTMLLPV-IVFLGL 284 + T+ A T++L V +V LG+ Sbjct: 227 DVETASAIYTLVLAVGLVTLGV 248 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 53.9 bits (128), Expect = 5e-09 Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 46/186 (24%) Query: 95 LAVTVPSV-IIPIFLAALAAYGFAWLEFPGRKLLFTLIVSLLVVPL-------------Q 140 +A+ +P V + +FLA L Y F G ++ T++ +V+P+ Sbjct: 84 MALHIPLVTFLGLFLAYLLKYTF------GSSIVKTIVFIGMVIPMVVGGLIVRFMFDEY 137 Query: 141 VALIPIL-------------RDYQKIGLNGTFLG-IWLAHTGFGLPLATYLLFNYISTIP 186 V ++P++ +Y ++ L LG +WL TGF L + + L +IP Sbjct: 138 VGVVPLVFKALGVDFLAKTWTNYPQLSLLSLILGSVWL-WTGFSLTVYSAAL----GSIP 192 Query: 187 RSIIESSLIDGADHFQIFTRLIVPLSAPALASFAIFQFLWVWNDL----LVALVFLSGVG 242 S IE++ IDGA H+ IF +++ PL PA + LW DL +V + L G G Sbjct: 193 SSFIEAARIDGAGHWHIFWKIVFPLVRPATIIVVVMTMLW---DLKIFDIVYVATLGGPG 249 Query: 243 QNMEVL 248 + VL Sbjct: 250 GSSNVL 255 >gi|118431570|ref|NP_148130.2| ABC transporter permease [Aeropyrum pernix K1] Length = 594 Score = 40.4 bits (93), Expect = 5e-05 Identities = 62/290 (21%), Positives = 117/290 (40%), Gaps = 41/290 (14%) Query: 1 MREMSTVRRVGMGLVLAVLCTVWTIPTLGLFITSLRPREEATRSGWWTVFSSPGELTLEN 60 + E V + + L+L V P LG+ + A W + ++P TL++ Sbjct: 314 LEEPGPVAKALIYLILIPWIVVSISPQLGVLVY-------AFSESW--IGTTPQGFTLDH 364 Query: 61 YRQVLAGADYSYTTRDGRKVTVRGDNMASAFLNSLAVTVPSVIIPIFLAALAAYGFAWLE 120 R+VL+ D R V +AF NS+ + + +I I +A +Y L Sbjct: 365 MREVLS---------DSRVV--------NAFRNSVTYALLASLISIVIAVTTSYSVERLR 407 Query: 121 FPGRKLLFTLIVSLLVVPLQVALIPILRDYQKIGLNGTFLGIW--------LAHTGFGLP 172 + L L + +P + IL + GT L + LA++ P Sbjct: 408 TRLSEPLDVLATIPIALPGLALALGILIMFSTSFTRGTLLDPYEFPALFLVLAYSVRKSP 467 Query: 173 LATYLLFNYISTIPRSIIESSLIDGADHFQIFTRLIVPLSAPALASFAIFQFLWVWNDLL 232 AT F + + +S+ E+++ GA ++ + VPL L + F++ ++ Sbjct: 468 FATRAAFAGLKHLHKSLEEAAMNLGARRLRVIRDITVPLIGINLLGGVLLTFVYSVTEVS 527 Query: 233 VALVFLSGVGQNMEVLTQRLLNMVGTRGQNWHLLTSGAFVTMLLPVIVFL 282 ++ + G+ ++ +T + + V T G GAFV + ++V L Sbjct: 528 TSIT-IGGLNEDYSPITYIIYDYV-TGGYG-----GGAFVHLAASIVVIL 570 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.142 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 303,478 Number of Sequences: 1700 Number of extensions: 13054 Number of successful extensions: 84 Number of sequences better than 1.0e-04: 7 Number of HSP's better than 0.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 72 Number of HSP's gapped (non-prelim): 8 length of query: 299 length of database: 492,079 effective HSP length: 76 effective length of query: 223 effective length of database: 362,879 effective search space: 80922017 effective search space used: 80922017 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719184|ref|YP_003874716.1| transporter [Spirochaeta thermophila DSM 6192] (364 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 109 1e-25 gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyru... 65 2e-12 gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum... 62 2e-11 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 109 bits (272), Expect = 1e-25 Identities = 90/290 (31%), Positives = 131/290 (45%), Gaps = 29/290 (10%) Query: 86 VFVGPAVLVMGWYLFLPIVRTFYLSFFDRMGSGFVGLSNYLYIFTDR---------TMRI 136 VF+ PA + ++ P + T YLS G + L Y + ++R T R Sbjct: 13 VFLLPAFTFITIFVIAPSIATVYLSL---NVDGHINLEKYAEVVSERSPDKALIMITSRP 69 Query: 137 ------AFANNLIWXXXXXXXXXXXXXXXXXXXDRMPFERTAKTLIFLPMSISFVGAGVI 190 A +N+IW KT++F+ M I V G+I Sbjct: 70 ESPPWGALIHNIIWMALHIPLVTFLGLFLAYLLKYTFGSSIVKTIVFIGMVIPMVVGGLI 129 Query: 191 WRFVYAYQPPGSPQYGVLNALVVALGGE--PQNWIVLRPWNTFFLIVILVWLYTGFAMVI 248 RF++ GV+ + ALG + + W + LI+ VWL+TGF++ + Sbjct: 130 VRFMF------DEYVGVVPLVFKALGVDFLAKTWTNYPQLSLLSLILGSVWLWTGFSLTV 183 Query: 249 FSAALKGIPKELREAAHIDGAGEFVTTVKILIPCIKGTIVSVSTTIILVTLKIFDIVYTM 308 +SAAL IP EAA IDGAG + KI+ P ++ + V +L LKIFDIVY Sbjct: 184 YSAALGSIPSSFIEAARIDGAGHWHIFWKIVFPLVRPATIIVVVMTMLWDLKIFDIVYVA 243 Query: 309 TNGLYG--SEVLASQQYKQMFKFLHYGRGSAIAVVIFLAVIPI-IWYNLR 355 T G G S VLA Y+ M + L Y SA+AV++ L +P +W LR Sbjct: 244 TLGGPGGSSNVLALVMYQYMARALDYQAASAVAVILTLLTLPPGLWLALR 293 >gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyrum pernix K1] Length = 314 Score = 65.5 bits (158), Expect = 2e-12 Identities = 59/239 (24%), Positives = 103/239 (43%), Gaps = 22/239 (9%) Query: 87 FVGPAVLVMGWYLFLPIVRTFYLSF-------FDRMGSGFVGLSNYLYIFTDRTMRIAFA 139 F+GPA+L++ + FLP++ T Y SF D VGL NY + F Sbjct: 12 FLGPALLIVITFFFLPLLLTVYTSFTNMRNWNVDAYLFDIVGLYNYKVLVHFAKYDPMFR 71 Query: 140 NNLIWXXXXXXXXXXXXXXXXXXXDRMPF---ERTA---KTLIFLPMSISFVGAGVIWRF 193 N LI + F ER + + L LP ++W + Sbjct: 72 NALITTVVFVAVTLVVNVLGGLTLAILTFFLEERISIHYRLLWLLPRMTPVAVYSLLWYY 131 Query: 194 VYAYQPPGSPQYGVLNALVVALG--GEPQNW-IVLRPWNTFFLIVILVWLY-TGFAMVIF 249 + S G LN +++ G +P NW + P T+++++ + L F M++F Sbjct: 132 FFH-----SDAIGTLNRILLLAGVIDKPINWGSYMLPLGTWWILIFVNGLVGVSFGMIVF 186 Query: 250 SAALKGIPKELREAAHIDGAGEFVTTVKILIPCIKGTIVSVSTTIILVTLKIFDIVYTM 308 +A++ IP E AA +DGA V +I++P I+ ++ V+ +L L + ++ + Sbjct: 187 YSAIRSIPWEYIAAARVDGASNLVIIRRIIVPMIRWHLLFVTVWQMLSLLTTYTHIFLL 245 >gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum pernix K1] Length = 288 Score = 62.0 bits (149), Expect = 2e-11 Identities = 60/268 (22%), Positives = 106/268 (39%), Gaps = 13/268 (4%) Query: 81 RIVPFVFVGPAVLVMGWYLFLPIVRTFYLSFFDRMGSGFVGLSNYLYIFTDRTMRIAFAN 140 R+ ++ + P +L + ++ PI+ +F ++F F + LY Sbjct: 11 RVKAWLLLSPTILYLAVFIAYPIIDSFRIAFVKNGSISFEAVDFLLYSPLSEFWSALKYT 70 Query: 141 NLIWXXXXXXXXXXXXXXXXXXXDRMPFERTAKTLIFLPMSISFVGAGVIWRFVYAYQPP 200 L+ R ++ +P+++S + AG+IW + + Sbjct: 71 FLLAILVIPTETLLALTAVILLFKRFRGRDAVIYVLVMPLALSDLAAGLIWYSMLTGK-- 128 Query: 201 GSPQYGVLNALVVALGGEPQNWIVL---RPWNTFFLIVIL-VWLYTGFAMVIFSAALKGI 256 G LN L++ +G I W TF + + VW T VI A + I Sbjct: 129 -----GFLNKLLLNMGLISDPIIFFGYENRWLTFLAVYLAEVWRSTAIVFVILFAGAQLI 183 Query: 257 PKELREAAHIDGAGEFVTTVKILIPCIKGTIVSVSTTIILVTLKIFDIVYTMTNGLYGSE 316 KE+ EAA + GA +V ILIP IK ++ + L ++F +V+ + Sbjct: 184 NKEVFEAAEVFGASFYVKLRHILIPMIKPSLQAALLIRTLFAFQVFAVVWILAG--RDIP 241 Query: 317 VLASQQYKQMFKFLHYGRGSAIAVVIFL 344 VLA + Y + + Y + A+VI L Sbjct: 242 VLAGEAYYSIVELHKYDVAALYAIVIAL 269 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.332 0.145 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 359,334 Number of Sequences: 1700 Number of extensions: 15701 Number of successful extensions: 78 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 3 length of query: 364 length of database: 492,079 effective HSP length: 78 effective length of query: 286 effective length of database: 359,479 effective search space: 102810994 effective search space used: 102810994 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719185|ref|YP_003874717.1| alpha-glucosides-binding periplasmic protein AglE precursor [Spirochaeta thermophila DSM 6192] (424 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430849|ref|NP_146914.2| ABC transporter substrate-binding ... 71 6e-14 >gi|118430849|ref|NP_146914.2| ABC transporter substrate-binding protein [Aeropyrum pernix K1] Length = 468 Score = 70.9 bits (172), Expect = 6e-14 Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 16/166 (9%) Query: 70 EFETQIFVQVEAG-TPPDIAALPQPGLMKRFAGKGQIIPLPA-----EVVAKIDQNYKPV 123 E + VQ EAG TP D+ P + A KG +I + E V I N K Sbjct: 131 EVARTLSVQFEAGVTPADVVITPWAWWIVEMAQKGHVIEVTGLINEDEYVGGILDNVK-- 188 Query: 124 WKELGSYEGKVYGVFHRVNIKSLVWYPKKFFESKGWKIPATWDELMALTEQIAAEGYAPW 183 + K++GV + +K WY K FF G P +W+E + L +QI +G Sbjct: 189 ------WNNKLWGVPFTMWLKPGFWYKKSFFAKHGLSEPNSWEEFLQLLDQI--KGIEGI 240 Query: 184 SIGMESGTATGWVATDWMEDIMLRTGGPEVYDKWVNHEIPFNHPAV 229 + SG + GW +D E ++ GGPE+ K + E+ F P V Sbjct: 241 KNPIVSGDSVGWPLSDVTEHFIIAFGGPELQYKLITGEVSFTDPQV 286 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 447,152 Number of Sequences: 1700 Number of extensions: 20714 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 48 Number of HSP's gapped (non-prelim): 1 length of query: 424 length of database: 492,079 effective HSP length: 79 effective length of query: 345 effective length of database: 357,779 effective search space: 123433755 effective search space used: 123433755 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719186|ref|YP_003874718.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (332 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 300,815 Number of Sequences: 1700 Number of extensions: 12984 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 332 length of database: 492,079 effective HSP length: 77 effective length of query: 255 effective length of database: 361,179 effective search space: 92100645 effective search space used: 92100645 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719187|ref|YP_003874719.1| hypothetical protein STHERM_c15060 [Spirochaeta thermophila DSM 6192] (68 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,543 Number of Sequences: 1700 Number of extensions: 1816 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 68 length of database: 492,079 effective HSP length: 39 effective length of query: 29 effective length of database: 425,779 effective search space: 12347591 effective search space used: 12347591 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719188|ref|YP_003874720.1| hypothetical protein STHERM_c15070 [Spirochaeta thermophila DSM 6192] (389 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431664|ref|NP_148291.2| alcohol dehydrogenase [Aeropyrum p... 88 4e-19 >gi|118431664|ref|NP_148291.2| alcohol dehydrogenase [Aeropyrum pernix K1] Length = 390 Score = 87.8 bits (216), Expect = 4e-19 Identities = 93/366 (25%), Positives = 159/366 (43%), Gaps = 24/366 (6%) Query: 11 RVVFGLEAEKELPSYIPLLGRKVLLHYGGGSIKKIGLYDVVVKALKDAGVEWVELGGVKP 70 R+V+ + L + + G K +L G + + + V+ + GVE GV P Sbjct: 9 RIVYNESLPRALETLLGDKGVKHVLVVTDGKVAAMSWFKEAVEHVASLGVEVCIFDGVTP 68 Query: 71 NPRLSLVHEGIELCRKEGVTGILAVGGGSVIDSAKA-----IAAGVKYEGDVWDFYAGKA 125 P + R+ I+AVGGGSVID+AKA + EG Y G Sbjct: 69 EPEFDVGDAIASEARRCRAEAIVAVGGGSVIDAAKAGFVKFVRPDADLEGLAPFNYLGLE 128 Query: 126 QPKETLPVGVVLTIPAAGSETSGSSVVTK--EDGQLKRGI-TYDILRPQFAILNPKWTLS 182 + + V T GS+ S V+TK G+ K + +Y+++ P +IL+P TL Sbjct: 129 D--SGIVLVAVPTTSGTGSDASYGIVLTKRVNGGREKIAVGSYEVV-PYASILDPSITLG 185 Query: 183 LPWYQTACGISDMLAHVMERYFTTVPHVELTDRMAEGVMRTIIHQAYRLKEDPNDINARS 242 +P T D LAH +E +T + L+D +A + + + DP + +AR+ Sbjct: 186 MPERLTVGTAVDALAHSVEAIASTNAN-PLSDALAAKAAEIVFRRLPEVVNDPGNYDARA 244 Query: 243 EIMWAGTVAHNDLLGTGREGDWTSHGIEHEISGIYDLAHGAGLSIVFPAWLKYVLPKRTE 302 E+ A T+A + G +H I H + HGA + +V P +++ E Sbjct: 245 EMHIAATMAG---MAFTNSGLGLAHAIAHPLGARLGTHHGATVGMVLPHVVRF-----NE 296 Query: 303 KIAQFAHRVF-GMDYYFDNPEETAREG--VRRLEQFYRDMGLPVRLKE-AGIDGSRIREM 358 + +A R + + ++ G +E+ Y +G P R++E AGI+ R + Sbjct: 297 SRSDYARRKYWELKLLLESLLGLEERGSLADHIEELYARVGQPTRVRELAGIERERYLTL 356 Query: 359 AEKTRD 364 A++ + Sbjct: 357 ADEVAE 362 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 427,148 Number of Sequences: 1700 Number of extensions: 20913 Number of successful extensions: 77 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 1 length of query: 389 length of database: 492,079 effective HSP length: 79 effective length of query: 310 effective length of database: 357,779 effective search space: 110911490 effective search space used: 110911490 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719189|ref|YP_003874721.1| hypothetical protein STHERM_c15080 [Spirochaeta thermophila DSM 6192] (202 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.140 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 196,860 Number of Sequences: 1700 Number of extensions: 9380 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 202 length of database: 492,079 effective HSP length: 73 effective length of query: 129 effective length of database: 367,979 effective search space: 47469291 effective search space used: 47469291 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719190|ref|YP_003874722.1| endo-1,4-beta-xylanase B [Spirochaeta thermophila DSM 6192] (804 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 885,699 Number of Sequences: 1700 Number of extensions: 42276 Number of successful extensions: 110 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110 Number of HSP's gapped (non-prelim): 0 length of query: 804 length of database: 492,079 effective HSP length: 84 effective length of query: 720 effective length of database: 349,279 effective search space: 251480880 effective search space used: 251480880 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719191|ref|YP_003874723.1| hypothetical protein STHERM_c15100 [Spirochaeta thermophila DSM 6192] (822 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431550|ref|NP_148088.2| dihydrolipoyl dehydrogenase [Aerop... 69 6e-13 gi|14601420|ref|NP_147957.1| mercuric reductase [Aeropyrum perni... 45 5e-06 gi|118431317|ref|NP_147693.2| thioredoxin reductase [Aeropyrum p... 43 3e-05 >gi|118431550|ref|NP_148088.2| dihydrolipoyl dehydrogenase [Aeropyrum pernix K1] Length = 464 Score = 68.6 bits (166), Expect = 6e-13 Identities = 73/295 (24%), Positives = 128/295 (43%), Gaps = 24/295 (8%) Query: 105 YDKLVLSPGAEPIRPPIPGIGDERIFTLRSVDDTDAIVRFIEEKKPRRVVIVGAGFIGLE 164 Y KLVL+ G P IPG+ + V + I+ +KP R++IVG G+IG+E Sbjct: 127 YSKLVLALGTSPAS--IPGLEPDG----EVVHNNRTILGL--RRKPGRMLIVGGGYIGVE 178 Query: 165 MAENFHSRELKVTIVELAPQVMNVLDFEMAAEVHQHLKTKNVAFFLGDAVSAFERTGDEL 224 A ++VTIVEL +++ + + + V + L+ + V V A ER Sbjct: 179 YATAMARLGVEVTIVELLDRLLPNMQRDFSRVVERRLRAEGVKIHTKSKVEAVERRERYA 238 Query: 225 RVRLKSGRTLVCDFVLLSIGVRPDSRLA--KEAGLELGPRGGIKVN-EYLQTSDPDIYAV 281 V + + D +L+++G RP++ ++ G++L G I+V+ L+T P +YA Sbjct: 239 VVEVSGVGKMEYDAILVAVGRRPNTGDVGLEKLGVKLDKAGYIQVDGATLETGVPGVYAS 298 Query: 282 GDAIEFPNPITGKSMPTYLAGPANKQGRIVANNIVEGNKYTYKGSIGTAIAKVFDLTVAS 341 GD +TG P LA A Q + A + + A+ D +A+ Sbjct: 299 GD-------VTG---PPLLAHRAFLQAVVAAERAAGDSSAAFDAKAVPAVVYT-DPELAT 347 Query: 342 TGMPEKVLKEEGIPHKAVIVHPGS--HAGYYPGAQPMTIKLIFSPDDGRVLGAQI 394 G+ + + G+ + S G G + K+++ +LG + Sbjct: 348 VGLTLEEARAAGVDAAETRLPLASLPRVGAIEGCRECFAKVVYDRSSRAILGFHV 402 >gi|14601420|ref|NP_147957.1| mercuric reductase [Aeropyrum pernix K1] Length = 461 Score = 45.4 bits (106), Expect = 5e-06 Identities = 71/328 (21%), Positives = 134/328 (40%), Gaps = 28/328 (8%) Query: 109 VLSPGAEPIRPPIPGIGDERIFTLRSVDDTDAIVRFIEEKKP---RRVVIVGAGFIGLEM 165 +++ GA RPPIPG+ E R +D+ R E P V ++G G+E Sbjct: 127 IIAVGARTWRPPIPGL-KEAEKAGRILDNE----RLFGEGPPPDMESVAVIGGRAQGVEA 181 Query: 166 AENFHSRELKVTIVELAPQVMNVLDFEMAAEVHQHLKTKNVAFFLGDAVSAFERTGDELR 225 A+ F LK +++ + +++ + E + + L+ V E +R Sbjct: 182 AQIFARSGLKTVLLQRSGRLLPRDEPEAGVYMKRVLEGDGVEVRTSARPLRVESVRGAVR 241 Query: 226 VRLKSGR---TLVCDFVLLSIGVRP--DSRLAKEAGLELGPRGGIKVNEYLQTSDPDIYA 280 + ++ + ++ ++ L+ G +P D + G+ + G I VNE L S P +YA Sbjct: 242 IDYETPQGPASVEASYIYLATGRKPVLDGLGLENVGVRVSSDGFIVVNEKLMAS-PGVYA 300 Query: 281 VGDAIEFPNPITGKSMPTYLAGPANKQGRIVANNIVEGNKYTYKGSIGTAIAKVFDLTVA 340 GD I L A ++G + A N + GN I A+ D A Sbjct: 301 AGDCIG----------GIQLEPVAAREGYVAALNALGGNVEMDYTVIPRAV--FTDPEFA 348 Query: 341 STGMPEKVL-KEEGIPHKAVIVHPGSHAGYYPGAQPMTIKLIFSPDDGRVLGAQIVGYEG 399 S G+ E+ L ++ G+ + G + +K++ P +V G ++ + Sbjct: 349 SVGLTERELARKLGVCACRTVDITQIPRARIMGYETGFVKMVVDPRTKKVAGVHMMAPQA 408 Query: 400 VDKRIDLLASVIQRKGTVTELTEIEHAY 427 + I A +++ TV ++ + H + Sbjct: 409 AE-AIHEAAFILKAGMTVDDVIDTIHIF 435 >gi|118431317|ref|NP_147693.2| thioredoxin reductase [Aeropyrum pernix K1] Length = 337 Score = 43.1 bits (100), Expect = 3e-05 Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 32/147 (21%) Query: 153 VVIVGAGFIGLEMA----------------ENFHSRELKVTIVELAPQVMNVLDFEMAAE 196 VV+VG G LE A + F ++ V P + +LD + E Sbjct: 163 VVVVGGGDSALEGALLLSGYVGKVYLVHRRQGFRAKPFYVEEARKKPNIEFILD-SIVTE 221 Query: 197 VHQHLKTKNVAFFLGDAVSAFERTGDELRVRLKSGRTLVCDFVLLSIGVRPDSRLAKEAG 256 + + ++V V + TG+E +R+ D + + IG P L + G Sbjct: 222 IRGRDRVESV-------VVKNKVTGEEKELRV--------DGIFIEIGSEPPKELFEAIG 266 Query: 257 LELGPRGGIKVNEYLQTSDPDIYAVGD 283 LE G + V+E+++TS P I+A GD Sbjct: 267 LETDSMGNVVVDEWMRTSIPGIFAAGD 293 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 829,255 Number of Sequences: 1700 Number of extensions: 39030 Number of successful extensions: 138 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 136 Number of HSP's gapped (non-prelim): 4 length of query: 822 length of database: 492,079 effective HSP length: 85 effective length of query: 737 effective length of database: 347,579 effective search space: 256165723 effective search space used: 256165723 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719192|ref|YP_003874724.1| transporter [Spirochaeta thermophila DSM 6192] (302 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601347|ref|NP_147883.1| hypothetical protein APE_1345 [Aero... 77 7e-16 >gi|14601347|ref|NP_147883.1| hypothetical protein APE_1345 [Aeropyrum pernix K1] Length = 197 Score = 76.6 bits (187), Expect = 7e-16 Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 3/177 (1%) Query: 93 LPASDASLIVASIPIVSLLVEAVVFRRGMGVREVVGALLSFAGVYLIVREGLRLTGRPVG 152 + AS +L+ A ++ + V+ + GA +S AG YL++ T +G Sbjct: 1 MDASITALVTALATPLTYIAAVVLGLEKATLLATAGAFISVAGTYLVLSPQPGSTVSIIG 60 Query: 153 YLLMAGAAASWVAYGFLSRPVLEANDRLVVVFWHFVAGTAAFLPFLPGEAQNLEAVHLGV 212 +LL GAA SWV Y + R L D+ VV+FW + GT +P A + +G+ Sbjct: 61 FLLAFGAALSWVIYTLILRVKLAGYDQNVVMFWTSLFGTVFTVPAYIALAPR-GGLEVGL 119 Query: 213 IGHLLFLGVGC--SALAYWTYQVALHRLGVAVANVFINLIPFVTVLTAMVVLGEALS 267 + L L V AL Y + + + R+G + + VFI L+P + ++LGE LS Sbjct: 120 LEAALILYVAAVPGALGYTLWNLGVERVGASKSAVFIPLVPLTAAILGWLLLGETLS 176 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.144 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 285,162 Number of Sequences: 1700 Number of extensions: 12459 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 2 length of query: 302 length of database: 492,079 effective HSP length: 76 effective length of query: 226 effective length of database: 362,879 effective search space: 82010654 effective search space used: 82010654 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719193|ref|YP_003874725.1| hypothetical protein STHERM_c15120 [Spirochaeta thermophila DSM 6192] (65 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.137 0.471 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,122 Number of Sequences: 1700 Number of extensions: 1579 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 65 length of database: 492,079 effective HSP length: 37 effective length of query: 28 effective length of database: 429,179 effective search space: 12017012 effective search space used: 12017012 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719194|ref|YP_003874726.1| hypothetical protein STHERM_c15130 [Spirochaeta thermophila DSM 6192] (271 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600857|ref|NP_147381.1| metal dependent hydrolase [Aeropyru... 43 7e-06 gi|14600672|ref|NP_147192.1| hypothetical protein APE_0382 [Aero... 41 3e-05 >gi|14600857|ref|NP_147381.1| metal dependent hydrolase [Aeropyrum pernix K1] Length = 250 Score = 43.1 bits (100), Expect = 7e-06 Identities = 35/88 (39%), Positives = 43/88 (48%), Gaps = 17/88 (19%) Query: 32 VLFDTGAGRALSHNARRLGVRREEIQAVVLSHGHYDHTGGL------TWWEGGGPPRIHL 85 VL D G A + A LG E I AVV++HGHYDH GL + GG P ++H Sbjct: 33 VLVDASCGAANALEA--LGYPPESIGAVVVTHGHYDHVCGLGLLSFIKSFRGGPPLKLHS 90 Query: 86 SPYA---VQS------RYSVRGGDARSV 104 P A V+S R S RGG S+ Sbjct: 91 PPAAEGVVRSVVEAGLRSSARGGVGYSI 118 >gi|14600672|ref|NP_147192.1| hypothetical protein APE_0382 [Aeropyrum pernix K1] Length = 229 Score = 41.2 bits (95), Expect = 3e-05 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Query: 24 LVRTGNGAVLFDTGAGR-----ALSHNARRLGVRREEIQAVVLSHGHYDHTGGLTW 74 L R G +VL+DTG+G AL+ N GV+ I ++SH H +GG W Sbjct: 19 LARVGGCSVLYDTGSGEPGSIVALAANLASAGVKPWSINVAIVSHAHVPSSGGARW 74 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 344,955 Number of Sequences: 1700 Number of extensions: 17796 Number of successful extensions: 48 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 2 length of query: 271 length of database: 492,079 effective HSP length: 75 effective length of query: 196 effective length of database: 364,579 effective search space: 71457484 effective search space used: 71457484 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719195|ref|YP_003874727.1| hypothetical protein STHERM_c15140 [Spirochaeta thermophila DSM 6192] (124 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.139 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 124,944 Number of Sequences: 1700 Number of extensions: 4668 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 124 length of database: 492,079 effective HSP length: 67 effective length of query: 57 effective length of database: 378,179 effective search space: 21556203 effective search space used: 21556203 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719196|ref|YP_003874728.1| hypothetical protein STHERM_c15150 [Spirochaeta thermophila DSM 6192] (111 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.140 0.522 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,492 Number of Sequences: 1700 Number of extensions: 2924 Number of successful extensions: 4 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 111 length of database: 492,079 effective HSP length: 65 effective length of query: 46 effective length of database: 381,579 effective search space: 17552634 effective search space used: 17552634 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719197|ref|YP_003874729.1| hypothetical protein STHERM_c15160 [Spirochaeta thermophila DSM 6192] (121 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 112,615 Number of Sequences: 1700 Number of extensions: 3825 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 121 length of database: 492,079 effective HSP length: 67 effective length of query: 54 effective length of database: 378,179 effective search space: 20421666 effective search space used: 20421666 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719198|ref|YP_003874730.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (457 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 501,054 Number of Sequences: 1700 Number of extensions: 24790 Number of successful extensions: 99 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99 Number of HSP's gapped (non-prelim): 0 length of query: 457 length of database: 492,079 effective HSP length: 80 effective length of query: 377 effective length of database: 356,079 effective search space: 134241783 effective search space used: 134241783 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719199|ref|YP_003874731.1| DNA-binding protein [Spirochaeta thermophila DSM 6192] (136 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.134 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 141,564 Number of Sequences: 1700 Number of extensions: 5724 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 136 length of database: 492,079 effective HSP length: 68 effective length of query: 68 effective length of database: 376,479 effective search space: 25600572 effective search space used: 25600572 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719200|ref|YP_003874732.1| ABC-type transport system periplasmic component-like protein [Spirochaeta thermophila DSM 6192] (234 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.144 0.469 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 250,723 Number of Sequences: 1700 Number of extensions: 10736 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 234 length of database: 492,079 effective HSP length: 74 effective length of query: 160 effective length of database: 366,279 effective search space: 58604640 effective search space used: 58604640 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719201|ref|YP_003874733.1| hypothetical protein STHERM_c15200 [Spirochaeta thermophila DSM 6192] (296 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.144 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 277,502 Number of Sequences: 1700 Number of extensions: 11387 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 296 length of database: 492,079 effective HSP length: 76 effective length of query: 220 effective length of database: 362,879 effective search space: 79833380 effective search space used: 79833380 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719202|ref|YP_003874734.1| hypothetical protein STHERM_c15210 [Spirochaeta thermophila DSM 6192] (214 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.144 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 239,295 Number of Sequences: 1700 Number of extensions: 10616 Number of successful extensions: 100 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100 Number of HSP's gapped (non-prelim): 0 length of query: 214 length of database: 492,079 effective HSP length: 73 effective length of query: 141 effective length of database: 367,979 effective search space: 51885039 effective search space used: 51885039 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719203|ref|YP_003874735.1| hypothetical protein STHERM_c15220 [Spirochaeta thermophila DSM 6192] (191 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 188,679 Number of Sequences: 1700 Number of extensions: 8267 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 191 length of database: 492,079 effective HSP length: 72 effective length of query: 119 effective length of database: 369,679 effective search space: 43991801 effective search space used: 43991801 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719204|ref|YP_003874736.1| hepn domain-containing protein [Spirochaeta thermophila DSM 6192] (69 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431390|ref|NP_147836.2| hypothetical protein APE_1272.1 [A... 47 9e-08 >gi|118431390|ref|NP_147836.2| hypothetical protein APE_1272.1 [Aeropyrum pernix K1] Length = 139 Score = 47.0 bits (110), Expect = 9e-08 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 18 EAARVLDKHYIPTRYPNGLPEGA-PTEFYTRKEAEDALRYSEEILRFARHLLG 69 E VL+K Y+P RYP+ P GA P E YTR++AE+AL + + R LG Sbjct: 81 ECIAVLNKLYLPPRYPDAWPGGAAPFENYTRRDAEEALECASRVYRAVEECLG 133 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,357 Number of Sequences: 1700 Number of extensions: 3418 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 1 length of query: 69 length of database: 492,079 effective HSP length: 40 effective length of query: 29 effective length of database: 424,079 effective search space: 12298291 effective search space used: 12298291 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719205|ref|YP_003874737.1| hypothetical protein STHERM_c15240 [Spirochaeta thermophila DSM 6192] (100 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,353 Number of Sequences: 1700 Number of extensions: 3656 Number of successful extensions: 4 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 100 length of database: 492,079 effective HSP length: 64 effective length of query: 36 effective length of database: 383,279 effective search space: 13798044 effective search space used: 13798044 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719206|ref|YP_003874738.1| transporter [Spirochaeta thermophila DSM 6192] (246 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 132 6e-33 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 102 1e-23 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 100 6e-23 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 99 1e-22 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 92 1e-20 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 92 2e-20 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 89 8e-20 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 88 2e-19 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 87 4e-19 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 86 1e-18 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 84 3e-18 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 84 3e-18 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 84 4e-18 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 83 7e-18 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 82 1e-17 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 82 2e-17 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 78 2e-16 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 78 2e-16 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 77 4e-16 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 75 1e-15 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 75 2e-15 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 74 3e-15 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 74 3e-15 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 73 8e-15 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 71 3e-14 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 70 4e-14 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 69 9e-14 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 69 1e-13 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 67 4e-13 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 67 4e-13 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 66 7e-13 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 66 9e-13 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 66 9e-13 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 65 2e-12 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 64 3e-12 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 64 4e-12 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 58 3e-10 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 57 4e-10 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 52 1e-08 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 47 3e-07 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 132 bits (333), Expect = 6e-33 Identities = 84/231 (36%), Positives = 131/231 (56%), Gaps = 16/231 (6%) Query: 4 LSIRHLSLTKEGKPILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEIL 63 L ++ L+ K +L+ + D++ G V+AV+GPNG+GKSSL VIMG Y +EG+IL Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 64 FKGQPFTPLSIDERARLGITLAWQEPARFDGLSVREYL------RLSARGHTE------- 110 G+ L +ERA GI +A Q+P + G+ + + RL A+ ++ Sbjct: 63 LDGESIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKIV 122 Query: 111 EEAAEALSLVGLDPARYLDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDA 170 + E + +GLD L+R+V+ SGGE+KR EL + P + +LDEPDSG+DID Sbjct: 123 KRMYEYATKLGLD-REILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDG 181 Query: 171 VERIFGLIGYLKDRGTTVVLVTHSAQVLR--QADRGFLLCNGTLLREGTVE 219 ++ + I L+D G V+L+TH A++L + DR +L G++L G E Sbjct: 182 LKIVAEFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGSVLARGGAE 232 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 102 bits (253), Expect = 1e-23 Identities = 68/207 (32%), Positives = 109/207 (52%), Gaps = 5/207 (2%) Query: 19 LDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFKGQPFTPLSIDERA 78 L D+SL+I G + +VGPNGAGKS+L + G +G +LF+ T + +RA Sbjct: 21 LFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTV--YKGRVLFENTDVTHMPPHDRA 78 Query: 79 RLGITLAWQEPARFDGLSVREYLRLSARGHTEEEAAEALSLVGLDPARYLDRKVDQS--L 136 ++G+T +Q F L+V E LRL+ E+ + L V R +R ++ L Sbjct: 79 KIGMTFIFQLENIFRELTVYENLRLAGYDLPEDVFRDRLEEVFSMFPRLKERLGQKAGTL 138 Query: 137 SGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYLKDRGTTVVLVTHSAQ 196 SGGER+ + +A + +P + L+DEP +G+ + + + L G TVVLV + + Sbjct: 139 SGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVRILNKEGYTVVLVEQNVK 198 Query: 197 V-LRQADRGFLLCNGTLLREGTVEEIL 222 L D+G L+ NG + +G EE+L Sbjct: 199 ASLEIGDKGVLVVNGRIAFDGPAEELL 225 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 99.8 bits (247), Expect = 6e-23 Identities = 71/239 (29%), Positives = 121/239 (50%), Gaps = 21/239 (8%) Query: 3 LLSIRHLSLTKEGKPILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEI 62 +L + L G LD ++L+IE G V ++GPNG+GK++L VI G Y+ G + Sbjct: 6 ILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGF--YKPDGGRV 63 Query: 63 LFKGQPFTPLSIDERARLGITLAWQEPARFDGLSVRE-------------YLRLSAR--- 106 LFKG+ T +S E ++LG+ +Q P F L+V E YL AR Sbjct: 64 LFKGRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLW 123 Query: 107 -GHTEEEAAEALSLVGLDPARYLDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSG 165 G + AA A ++G ++ + LSGG+ K +E+A + + ++DEP +G Sbjct: 124 LGFEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAG 183 Query: 166 VDIDAVERIFGLIGYL-KDRGTTVVLVTHSAQVLRQ-ADRGFLLCNGTLLREGTVEEIL 222 V+ I I YL +++G T +++ H ++++ DR + + G ++ G +E+L Sbjct: 184 VNPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEVL 242 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 98.6 bits (244), Expect = 1e-22 Identities = 82/255 (32%), Positives = 122/255 (47%), Gaps = 32/255 (12%) Query: 19 LDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFKGQPFTP--LSIDE 76 +D + L I G V A+VG +G GK++L I+G+ +G I ++G+ TP L+ D Sbjct: 38 VDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIE--EPSDGAIYYRGELLTPHRLARDR 95 Query: 77 RARLGITLAWQEPARF------DGLSVREYLRLSARGHTEE---EAAEALSLVGLDPARY 127 R R + + +Q+P + G V E L + EE A E L VGL P R Sbjct: 96 RLRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETVGLTPGRE 155 Query: 128 LDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLI-GYLKDRGT 186 + LSGG+R+RV +A + + P + + DEP S +D+ I LI Y + G Sbjct: 156 FYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTGA 215 Query: 187 TVVLVTHSAQVLRQ-ADRGFLLCNGTLLREGTVEEIL-----PYFS---------SRCYP 231 T+VL+TH V R ADR ++ G ++ G ++ PY + SR P Sbjct: 216 TIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVIENPRHPYTAALVTSTPSISRRRP 275 Query: 232 CNHPNNPVPGEVGSA 246 P P+ GEV SA Sbjct: 276 ---PRFPISGEVPSA 287 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 92.0 bits (227), Expect = 1e-20 Identities = 64/211 (30%), Positives = 109/211 (51%), Gaps = 9/211 (4%) Query: 18 ILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGY---REIEGEILFKGQPFTPLSI 74 ++ +LSL +E G + ++GPNGAGK++L + G+ Y R G I +G+ T Sbjct: 20 VIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNREP 79 Query: 75 DERARLGITLAWQEPARFDGLSVREYL--RLSARGHTEEEAAEALSLVGLDPARYLDRKV 132 DE AR G+ + F L+ E L A G + ++ LS R ++ Sbjct: 80 DEIARRGVIYVMEGRRIFKELTTEENLVSVAYAAGASRDDIRSVLSYFPRLKERLGEKA- 138 Query: 133 DQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYL-KDRGTTVVLV 191 +LSGGE++ + +A + RP L +LDEP G+ +I+ I L ++ G T++L Sbjct: 139 -GNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHREEGLTILLA 197 Query: 192 THSA-QVLRQADRGFLLCNGTLLREGTVEEI 221 +A + L +D G+++ NG ++ EG+ EE+ Sbjct: 198 EQNARKALEISDYGYVIENGRIVLEGSAEEL 228 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 91.7 bits (226), Expect = 2e-20 Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 20/236 (8%) Query: 4 LSIRHLSLTKEGKPILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGL--PGYREIEGE 61 L + + +LT + + D +SL + G ++VG +G+GKS+LA I L P R + G Sbjct: 9 LKVHYYTLTGIVRAV-DGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGR 67 Query: 62 ILFKGQPFTPLSIDERAR-----LGITL----AWQEPARFDGLSVREYLR----LSARGH 108 IL+ G L+ +E R +G+ A+ +P R G + E L S+ Sbjct: 68 ILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLASSGSE 127 Query: 109 TEEEAAEALSLVGLDPARYLDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDI 168 E A +AL LVG+ R LSGG+R+RV +AA VA+ P + + DEP + +D+ Sbjct: 128 AESMAGDALELVGIPRDRA--SVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDV 185 Query: 169 DAVERIFGLIGYL-KDRGTTVVLVTHSAQVLRQ-ADRGFLLCNGTLLREGTVEEIL 222 +I L+ L ++RG TV+LVTH + + +DR ++ G L+ G E+++ Sbjct: 186 VVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDVV 241 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 89.4 bits (220), Expect = 8e-20 Identities = 68/238 (28%), Positives = 120/238 (50%), Gaps = 22/238 (9%) Query: 3 LLSIRHLSLTKEGKPILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEI 62 +L +++L G LD++S+++ G + ++GPNGAGK+SL VI G+ Y+ G + Sbjct: 1 MLWTENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGV--YKPQRGRV 58 Query: 63 LFKGQPFTPLSIDERARLGITLAWQEPARFDGLSVREYLRLS----ARGHTEEEA----- 113 FKG+ T L +R LG++ +Q F ++V E + + RG E+A Sbjct: 59 YFKGRDITGLKPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFR 118 Query: 114 AEALSLVGLDPARYLDRKVD---------QSLSGGERKRVELAAVVAMRPTLALLDEPDS 164 A+ + + A ++ +D +L G +K+V+LA +A P + L+DEP + Sbjct: 119 AKRWEVEARERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMA 178 Query: 165 GVDIDAVERIF-GLIGYLKDRGTTVVLVTHSAQVLRQ-ADRGFLLCNGTLLREGTVEE 220 G+ + E I +I + TT+VL+ H +V+ DR ++ G ++ EG E Sbjct: 179 GLSKEEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHE 236 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 88.2 bits (217), Expect = 2e-19 Identities = 65/212 (30%), Positives = 110/212 (51%), Gaps = 15/212 (7%) Query: 19 LDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFKGQPFTPLSIDERA 78 L +S + AV+GP+G GK+++ VI GL R G + F G +T L + R+ Sbjct: 21 LRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRR--GRVFFGGVDYTGLPPERRS 78 Query: 79 RLGITLAWQEPARFDGLSVREYLRLSAR------GHTEEEAAEALSLVGLDPAR-YLDRK 131 + +Q+ A F ++V + + R G + AL VGL P R ++ R+ Sbjct: 79 ---VGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWALETVGLTPPREFMGRR 135 Query: 132 VDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYLKDR-GTTVVL 190 V LSGG+++RV LA +A P + LLDEP S +D +R+ + L+ + G+T++ Sbjct: 136 VT-GLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQRKLGSTMIY 194 Query: 191 VTHSA-QVLRQADRGFLLCNGTLLREGTVEEI 221 VTH + + AD ++ +G +++ GT E+ Sbjct: 195 VTHDQWEAMELADTLVIMRDGRIVQHGTPSEV 226 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 87.0 bits (214), Expect = 4e-19 Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 31/245 (12%) Query: 1 MALLSIR--HLSLTKEGKPILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGL----PG 54 M L+ +R L++ K IL +S + G V A++GP+G+GKS+L VI L PG Sbjct: 1 MKLMDVRVSGLNVWITDKHILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPG 60 Query: 55 YREIEGEI------LFKGQPFTPLSIDERARLGITLAWQEPARFDGLSVREYLRLSARGH 108 R +EGE+ + K P+ R + +QEP F +++ E + + + H Sbjct: 61 AR-VEGEVWINNMNVMKEDPYN-------IRRYTGMVFQEPNPFPHMTIYENVAIGPKLH 112 Query: 109 TEEEAAEALSLV---GLDPARYLDRKVDQ------SLSGGERKRVELAAVVAMRPTLALL 159 + + L + L A D D+ LSGG+R+R+ LA +A++P + LL Sbjct: 113 GLAKNKKELDEIVEWALKMAHLWDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLL 172 Query: 160 DEPDSGVD-IDAVERIFGLIGYLKDRGTTVVLVTHS-AQVLRQADRGFLLCNGTLLREGT 217 DEP + +D + V+ ++ Y K+ TV++VTH+ Q R +D+ L G ++ G Sbjct: 173 DEPTANIDPVSTVKIEQSIVEYAKEEMATVIIVTHTPQQAARISDQILFLYEGRVIEYGP 232 Query: 218 VEEIL 222 +E++ Sbjct: 233 TKELV 237 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 85.5 bits (210), Expect = 1e-18 Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 12/226 (5%) Query: 3 LLSIRHLSLTKEGKPILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEI 62 +L +R + G L +S + G ++GPNGAGK++L +I G+ Y G + Sbjct: 4 ILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGI--YMPDRGRV 61 Query: 63 LFKGQPFTPLSIDERARLGITLAWQEPARFDGLSVRE------YLRLSARGHTEEEAAEA 116 ++KG T R+R GI +Q L+V LR + E A EA Sbjct: 62 IYKGVDITGWPAYRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAMEA 121 Query: 117 LSLVGLDPARYLDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFG 176 + +VGL + K L+ E+KR+ELA +A +P L LLDE +G+ V+ + Sbjct: 122 IDMVGLAGKEDILAK---DLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVY 178 Query: 177 LIGYLKDRGTTVVLVTHSAQ-VLRQADRGFLLCNGTLLREGTVEEI 221 + + RG T+++V H + V+ A+R +L G + EGT E+ Sbjct: 179 TLLEISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREV 224 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 84.3 bits (207), Expect = 3e-18 Identities = 68/214 (31%), Positives = 100/214 (46%), Gaps = 20/214 (9%) Query: 15 GKPILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFKGQPFTPLSI 74 G L ++ AG V A++G NGAGK++L IMG+ R+ G IL G P Sbjct: 17 GVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRK--GRILVDGYELRPKGP 74 Query: 75 DERARLGITLAWQEPARFDGLSVREYLRLSARGHTEE-----------EAAEALSLVGLD 123 + R GI +A Q P + G+ E L ++ + EA+EAL L +D Sbjct: 75 GDSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAEASEALGL-NID 133 Query: 124 PARYLDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYLKD 183 P RYL + ER+R+E+ +A+ LLDEP + + + R+ G L Sbjct: 134 PDRYLGE-----MGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAA 188 Query: 184 RGTTVVLVTHS-AQVLRQADRGFLLCNGTLLREG 216 G V+LVTH + + ADR +L G + EG Sbjct: 189 SGAAVLLVTHRIGEAMEHADRLVILRKGVKVYEG 222 Score = 53.1 bits (126), Expect = 6e-09 Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 21/221 (9%) Query: 3 LLSIRHLSLTKEGKPILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEI 62 +LS+ +SL P L L++ G V V G G G+ L VI+GL + +G I Sbjct: 258 VLSVDRVSLP----PRLRMARLEVRQGEVVGVAGVAGNGQEELFEVIVGLR--KPAKGRI 311 Query: 63 LFKGQPFTPLSIDERARLGITLAWQEP---ARFDGLSVREYLRLSARG----------HT 109 L G T R RLG+ + +E A G S+ + LS + Sbjct: 312 LIAGVDVTRAPPLARRRLGLGVIPEERLGHALVPGESIAFNIALSIHTARDGFIVDWRYY 371 Query: 110 EEEAAEALSLVGLDPARYLDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDID 169 E+ A E + +G+ R++ LSGG +R+ LA + ++P L + P +G+D++ Sbjct: 372 EKLAEEMIRDMGIKAVS--PRQMVDELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLE 429 Query: 170 AVERIFGLIGYLKDRGTTVVLVTHSAQVLRQADRGFLLCNG 210 + + ++ +RG +V+ +LR +++ ++ G Sbjct: 430 GQQAVAEMMRMSSERGGVLVIDEDLDFLLRVSNKIYVASGG 470 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 84.0 bits (206), Expect = 3e-18 Identities = 68/231 (29%), Positives = 115/231 (49%), Gaps = 17/231 (7%) Query: 3 LLSIRHLSLTKEGKPILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEI 62 LL +R L ++ G+ +L + + + G ++GP+G+GKS+L I L G I Sbjct: 4 LLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRL--VEPDSGSI 61 Query: 63 LFKGQPFTPLSIDE--RARLGITLAWQEPARFDGLSV--------REYLRLSARGHTEEE 112 +F+G T LS + R I Q + F ++V + L LS R EE Sbjct: 62 VFRGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRD-AEER 120 Query: 113 AAEALSLVGLDPARYLDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVE 172 A + LS++G++ L + LSGG+++R LA +AM P + LLDEP S +D ++ Sbjct: 121 AVKYLSMLGIED---LAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRA 177 Query: 173 RIFGLIGYLKDRGTTVVLVTHSAQ-VLRQADRGFLLCNGTLLREGTVEEIL 222 + + + G +++VTH A ++ ADR + +G + EG E++ Sbjct: 178 DVLEALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSELV 228 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 83.6 bits (205), Expect = 4e-18 Identities = 67/185 (36%), Positives = 102/185 (55%), Gaps = 12/185 (6%) Query: 15 GKPILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFKGQPFTPLSI 74 G+ +L D+SL + G VY VVGPNGAGK++L ++GL YR G + G+P Sbjct: 20 GRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGL--YRADRGRVALLGEPVERAGG 77 Query: 75 DERARLGITLAWQEPARFDGLSVREYLRLSARGHTEEE----AAEALSLVGLDPARYLDR 130 R+ EP R ++ E+LRL A + E+ EA L GL L Sbjct: 78 SLFRRVAYLPEDGEPYR--NMTGHEFLRLYASIYGVEDLEGYLEEASRLSGL--GGRLGE 133 Query: 131 KVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVD-IDAVERIFGLIGYLKDRGTTVV 189 +V +S S G R+R+ +AA++A++P+LA+LDEP +G+D + +V L Y + G TV+ Sbjct: 134 RV-RSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERHGVTVL 192 Query: 190 LVTHS 194 L +H+ Sbjct: 193 LSSHN 197 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 82.8 bits (203), Expect = 7e-18 Identities = 63/226 (27%), Positives = 117/226 (51%), Gaps = 11/226 (4%) Query: 3 LLSIRHLSLTKEGKPILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEI 62 LL ++ + + L +SL + G + A++G NGAGK++ I GL R G I Sbjct: 6 LLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRN--GSI 63 Query: 63 LFKGQPFTPLSIDERARLGITLAWQEPARFDGLSVREYLRLSA-----RGHTEEEAAEAL 117 +++G+ T L +R GI+ + F L+V E LR++A + H ++ + Sbjct: 64 IWQGRDITGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRVAASTRRAKEHFQDSLEQVY 123 Query: 118 SLVGLDPARYLDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGL 177 ++ + AR ++ +LSGGE++ + +A + RP L ++DEP G+ + L Sbjct: 124 TIFPILKARR--SQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYL 181 Query: 178 IGYLKDR-GTTVVLVTHSAQV-LRQADRGFLLCNGTLLREGTVEEI 221 L++ G T++LV + + L+ ADRG+++ G ++ EG +E+ Sbjct: 182 ASRLREELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDEL 227 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 82.4 bits (202), Expect = 1e-17 Identities = 64/224 (28%), Positives = 111/224 (49%), Gaps = 14/224 (6%) Query: 3 LLSIRHLSLTKEGKPILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEI 62 +L R + G+P+LD + L++ G +VGPNGAGK++L V +GL R G + Sbjct: 4 VLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLA--RRDGGRV 61 Query: 63 LFKG-QPFTPLSIDERARLGITLAWQEPARFDGLSVREYLRLSAR--GHTEEEAAEALSL 119 L G P+ + RAR G+ + ++ P + V E+L +A G + A+ Sbjct: 62 LLNGLDPWR----EPRAREGVGVVFERPNLPSSMPVVEFLESAAAIIGSSPSRVDWAIRA 117 Query: 120 VGLDPARYLDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIG 179 GL+ + K LS G ++R +A + P + DEP S +D + L+ Sbjct: 118 AGLEGHEW---KTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLA 174 Query: 180 YL-KDRGTTVVLVTH-SAQVLRQADRGFLLCNGTLLREGTVEEI 221 L ++ G ++++ +H ++LR A R ++L G L EG+ E++ Sbjct: 175 RLNREHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDL 218 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 81.6 bits (200), Expect = 2e-17 Identities = 65/217 (29%), Positives = 109/217 (50%), Gaps = 20/217 (9%) Query: 14 EGKPILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFKGQPFTPLS 73 +G LD++ + AG V+A++G NGAGK++L ++ G + GEI G+ + Sbjct: 24 DGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYG--EIKPTMGEIYVWGRKVSWRG 81 Query: 74 IDERARLGITLAWQEPARFDGLSVREYLR--LSARGHTEEEAAEALSLVGLDPARYLDRK 131 + R GI + +Q+ + ++V E + LS+ G EA L+ A L + Sbjct: 82 PWDAIRNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRT----LETAERLGLE 137 Query: 132 VDQS-----LSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYLKDRGT 186 +D + L G R+RVE+ ++ + +LDEP S + E++F + LKD G Sbjct: 138 IDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLRLLKDMGV 197 Query: 187 TVVLVTHS-AQVLRQADRGFLLCNGTLLREGTVEEIL 222 +VV +TH +V+R ADR T+LR G V ++ Sbjct: 198 SVVYITHKLGEVVRVADR------VTVLRRGRVSAVI 228 Score = 49.7 bits (117), Expect = 7e-08 Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 19/221 (8%) Query: 3 LLSIRHLSLTKEGKPILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGY------- 55 LLS+R +S+ +G + ++SL++ G + + G G G+ L I+GL Sbjct: 262 LLSVRGVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEV 321 Query: 56 --REIEGEILFKGQPFTPLSIDERARLGITLAWQEPARFDGLSVREYLRLSARGHTEE-- 111 R IEG + F ++ D L + + E F + + L L R E+ Sbjct: 322 QGRRIEGSLDFYRAGGGYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLR-RSRLEDLF 380 Query: 112 -EAAEALSLVGLDPARYLDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDA 170 E LV P + R LSGG +++V + + V L + P G+DI Sbjct: 381 RRLVERFRLVARSPWTPVGR-----LSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIAT 435 Query: 171 VERIFGLIGYLKDRGTTVVLV-THSAQVLRQADRGFLLCNG 210 + L+ L +G ++LV T ++L +DR +++ G Sbjct: 436 TSFVRNLLSELARQGAGILLVSTDLDEILELSDRIYVMSGG 476 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 78.2 bits (191), Expect = 2e-16 Identities = 63/201 (31%), Positives = 99/201 (49%), Gaps = 12/201 (5%) Query: 19 LDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFKGQPFTPLSIDERA 78 L ++SL + G V A++GP+G+GK++L +I G+ R G ++ G + +E Sbjct: 30 LREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVD--RPNAGRVIVDGFEVSSAGGEELR 87 Query: 79 RLGIT---LAWQEPARFDGLSVREYLRLS---ARGHTEEEAAEALSLVGLDPARYLDRKV 132 R + +Q+ L+ E + L A E L VGL +R+ Sbjct: 88 RFRLERVGYVFQQHNLIPTLTALENILLPMALAGKANRLRGQELLRRVGLGGK---ERRY 144 Query: 133 DQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFG-LIGYLKDRGTTVVLV 191 + LSGGE++R+ +A +A P + + DEP +DI ERI L+ RG TVVL Sbjct: 145 PEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEAHSRGKTVVLT 204 Query: 192 THSAQVLRQADRGFLLCNGTL 212 TH +V R ADR ++ +G L Sbjct: 205 THDPRVARMADRVAVIEDGRL 225 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 78.2 bits (191), Expect = 2e-16 Identities = 70/217 (32%), Positives = 113/217 (52%), Gaps = 24/217 (11%) Query: 19 LDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFKGQPFTPLSIDERA 78 +D + L I+ G + ++GP+G GK++ +I GL Y + EG IL G+ T +R Sbjct: 19 VDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLE-YPD-EGRILIDGEDVTFKDPKDR- 75 Query: 79 RLGITLAWQEPAR------FDGLSVREYLRLSARGHTEEE----AAEALSLVGLDPARYL 128 + + +Q A FD ++ +LR G T+++ E L+ ++ L Sbjct: 76 --NVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIEVAKLLRIEDL--L 131 Query: 129 DRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERI---FGLIGYLKDRG 185 DRK Q LSGG+++RV LA + RP + L+DEP S ++DA+ R+ L KD Sbjct: 132 DRKPGQ-LSGGQQQRVALARALVRRPKVWLMDEPLS--NLDALLRLAMRAELKKLQKDLK 188 Query: 186 TTVVLVTH-SAQVLRQADRGFLLCNGTLLREGTVEEI 221 T V VTH A+ + ADR ++ G +++ GT EE+ Sbjct: 189 ITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEV 225 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 77.0 bits (188), Expect = 4e-16 Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 18/213 (8%) Query: 19 LDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGL--PGYREIEGEILFKGQPFTPLSIDE 76 +D +S + G V + G +G+GKS+LA I+GL P R + G I+ G T +S E Sbjct: 25 VDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTSMSEAE 84 Query: 77 RARL----GITLAWQ------EPARFDGLSVREYLRLS---ARGHTEEEAAEALSLVGLD 123 R +++ +Q P G + E L++ R + E L VGL Sbjct: 85 LRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELLESVGLH 144 Query: 124 PARYLDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYLK- 182 R + + LSGG+++RV +A +A+ P + + DEP + +D+ +I L+ L Sbjct: 145 --RSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLKKLAW 202 Query: 183 DRGTTVVLVTHSAQVLRQADRGFLLCNGTLLRE 215 ++ +++L+TH V+ + ++ G + E Sbjct: 203 EKNLSIILITHDLSVIAELAETVMIMYGGKIAE 235 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 75.5 bits (184), Expect = 1e-15 Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 21/215 (9%) Query: 17 PILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFKGQPFTPLSIDE 76 P+L +S ++ G + A++GPNG+GK++L ++ G+ + G + G P Sbjct: 20 PVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGI--IKPSRGRVEVCGSP------PG 71 Query: 77 RARLGITLAWQEPARFDGLSVREYLRLSARGHTE---------EEAAEALSLVGLDPARY 127 R R + A P L E L G +E EE AL +G+ + Sbjct: 72 RVRRMLGYAPASPEVDPRLKAVEVALLYRYGVSEGVAWGRRDWEEVLAALGEMGVGELAW 131 Query: 128 LDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYLKDRGTT 187 R+ + LS G+R+ V LA V+A RP LALLDEP S +D+ + R+ ++ L+ R T Sbjct: 132 --RRWGE-LSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRSLRGR-AT 187 Query: 188 VVLVTHSAQVLRQADRGFLLCNGTLLREGTVEEIL 222 +V TH AD +L G L +G E ++ Sbjct: 188 IVYTTHDPLAAMAADSVIMLREGLLHAQGPPEAVV 222 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 74.7 bits (182), Expect = 2e-15 Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 11/210 (5%) Query: 19 LDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFKGQPFTPLSIDERA 78 L +S + G +Y+ +GPNGAGK++ ++ L GE G + R Sbjct: 28 LKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTL--LDPDGGEARVAGFDVVKERWEVRK 85 Query: 79 RLGITLAWQEPARFDGLSVREYLRLSAR------GHTEEEAAEALSLVGLDPARYLDRKV 132 R+G+ L+ E + L+ RE L R G + E L LVGL D+ Sbjct: 86 RIGVMLS-VERGFYWKLTGRENLYYFGRIYGIPQGELKSRIKEVLDLVGLTDLGGADKPF 144 Query: 133 DQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYLKDRGTTVVLVT 192 ++ +S G + R+ LA V+ P + +LDEP G+D + I G+I L G T+ + T Sbjct: 145 EE-MSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSLASEGRTIFITT 203 Query: 193 HS-AQVLRQADRGFLLCNGTLLREGTVEEI 221 H+ + +DR ++ G + EGT +E+ Sbjct: 204 HNMVEAEMISDRVGIIIGGRIAMEGTPDEL 233 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 73.9 bits (180), Expect = 3e-15 Identities = 68/206 (33%), Positives = 108/206 (52%), Gaps = 20/206 (9%) Query: 21 DLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFKGQPFTPLSIDERARL 80 D++L IE +++GP+G+GK++L +I G+ Y+ G I F T L ++R Sbjct: 21 DVNLYIEDKEFVSILGPSGSGKTTLLYLIAGI--YKPSRGRIYFNDVDVTDLPPNKR--- 75 Query: 81 GITLAWQEPARFDGLSVREY----LRLSARGHT--EEEAAEALSLVGLDPARYLDRKVDQ 134 I L +Q A + ++V E LRL G +E+ L+G++ LDR Q Sbjct: 76 NIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVAKLLGIEGL--LDRYPAQ 133 Query: 135 SLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERI---FGLIGYLKDRGTTVVLV 191 LSGG+++RV LA + P + LLDEP S ++DA+ RI L K+ G T + V Sbjct: 134 -LSGGQQQRVALARALVKEPEVLLLDEPLS--NLDALLRIKIRSELKKLQKELGITAIYV 190 Query: 192 TH-SAQVLRQADRGFLLCNGTLLREG 216 TH ++ L ADR ++ +G + + G Sbjct: 191 THDQSEALAMADRIAIIASGVIQQVG 216 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 73.9 bits (180), Expect = 3e-15 Identities = 70/252 (27%), Positives = 122/252 (48%), Gaps = 28/252 (11%) Query: 3 LLSIRHLSL---TKEGKP-ILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMG-LPGYRE 57 +LSIR L++ T++G LD + LD+ G + A+VG +G GKS+LA I LP Sbjct: 5 VLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAV 64 Query: 58 IE-GEILFK-----GQPFTPLSIDERARLG---ITLAWQEPARFDGLSVREYLRLSARGH 108 IE G I+ LS DE ++ +++ +Q+P+ LS ++ H Sbjct: 65 IEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSA--ALSPVHKVKKQVTDH 122 Query: 109 TEEE-------AAEALSLVGLDPARYLDRKVDQSLSGGERKRVELAAVVAMRPTLALLDE 161 E A E L + + + K LSGG ++R+ +AA + RP + + DE Sbjct: 123 VSGEKRRVEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADE 182 Query: 162 PDSGVDIDAVERIFGLIGYLKDR-GTTVVLVTHSAQVLRQ-ADRGFLLCNGTLLREGTVE 219 P + +D+ +I ++ L++ TT++L+TH+ V + ADR ++ G ++ V Sbjct: 183 PTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVVE---VA 239 Query: 220 EILPYFSSRCYP 231 ++ F +P Sbjct: 240 DVFSLFERPLHP 251 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 72.8 bits (177), Expect = 8e-15 Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 14/210 (6%) Query: 19 LDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFKGQPFTPLSIDERA 78 +D +S I G +++++GPNGAGK++ ++ L R GE G + R Sbjct: 22 VDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTL--LRPTSGEAWIAGYSIVREPGNVRR 79 Query: 79 RLGIT----LAWQEPARFDGLSVREYLRLSARGHTEEEAAEALSLVGLDPARYLDRKVDQ 134 +G+ A E + +D + ++ L E E L + L A + R+V Sbjct: 80 VIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEARERTREVLDYLDLMEAAH--RRV-A 136 Query: 135 SLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYLKDRGTTVVLVTH- 193 + SGG R+++E+A + P + LDEP G+D+ + ++ I LK T++L TH Sbjct: 137 TYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLKRSAVTILLTTHY 196 Query: 194 --SAQVLRQADRGFLLCNGTLLREGTVEEI 221 A++L +DR ++ G ++ EGT EE+ Sbjct: 197 MEEAEML--SDRVAIIDRGRIVAEGTPEEL 224 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 70.9 bits (172), Expect = 3e-14 Identities = 68/261 (26%), Positives = 114/261 (43%), Gaps = 54/261 (20%) Query: 19 LDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILF---KGQPFTPLSID 75 +D +SL ++ G + VVG +G+GK++LA I+GL +R G + KG+ +SI Sbjct: 30 VDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGL--HRPFTGHVFIDIDKGELEEAVSIY 87 Query: 76 ERARLGITLAWQEPARF------------------------------------DGLSVRE 99 E + G + ++ R+ + V E Sbjct: 88 EALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMKVGE 147 Query: 100 YLRLSARGHTEEEAAEA--------LSLVGLDPARYLDRKVDQSLSGGERKRVELAAVVA 151 + R H E+++E L VGL + DR LSGG+R+RV +A +A Sbjct: 148 IIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGK-EFADR-YPYELSGGQRQRVAIARALA 205 Query: 152 MRPTLALLDEPDSGVDIDAVERIFGLIGYL-KDRGTTVVLVTHSAQVLRQADRGFLLCNG 210 + P + +LDEP S +D+ +I L+ L K G T +L+TH V+R ++ Sbjct: 206 LNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMYS 265 Query: 211 TLLREGTVEEILPYFSSRCYP 231 + E + IL F++ +P Sbjct: 266 GKIMESAPKHIL--FTNPLHP 284 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 70.5 bits (171), Expect = 4e-14 Identities = 68/226 (30%), Positives = 106/226 (46%), Gaps = 12/226 (5%) Query: 3 LLSIRHLSLTKE-GKPI-LDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEG 60 + IR S+TK G + LD +SL+I G ++ ++GP+G GK++ VI G EG Sbjct: 1 MAGIRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFE--TPDEG 58 Query: 61 EILFKGQPFTPLSIDERARLGIT---LAWQEPARFDGLSVREYLRLSARGHTEEEAAEAL 117 + + T L ER + W FD ++ LR R A Sbjct: 59 RVYIGSRDVTMLKPYERNTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWAA 118 Query: 118 SLVGLDPARYLDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGL 177 L+ +D LDR Q LSGG+++RV +A + P + L+DEP S +D ++ Sbjct: 119 ELLEID--HLLDRYPHQ-LSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREE 175 Query: 178 IGYLKDR-GTTVVLVTH-SAQVLRQADRGFLLCNGTLLREGTVEEI 221 I L+ R G T+V VTH + L + R ++ G + + GT E+ Sbjct: 176 IVRLQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEV 221 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 69.3 bits (168), Expect = 9e-14 Identities = 73/277 (26%), Positives = 118/277 (42%), Gaps = 53/277 (19%) Query: 19 LDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFK------------- 65 +D +S I G V+ +VG +G GK++ I+ L + G + FK Sbjct: 50 VDGVSFSIARGEVFCLVGESGCGKTTTGKAILRL--VKATGGRVFFKPKKEVLEELERRG 107 Query: 66 ----GQPFTPLSIDER-----ARLGITLAWQEPARFDGLSVR--------EYLRLSARGH 108 G F L R R + + +Q+P + L+ R + L + + G+ Sbjct: 108 VKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDP--YGSLNPRFTIKRILEDPLLIHSIGN 165 Query: 109 T---EEEAAEALSLVGLDPARYLDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSG 165 EE A L V L PA + LSGG+R+RV +A + P+L + DEP S Sbjct: 166 AREREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSM 225 Query: 166 VDIDAVERIFG-LIGYLKDRGTTVVLVTHSAQVLRQ-ADRGFLLCNGTLLREGTVEEIL- 222 +D+ I L+G+ + GT+++ +TH V R DR ++ G ++ G I+ Sbjct: 226 LDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDARRIIE 285 Query: 223 ----PYFSS--RCYPCNHPNN-------PVPGEVGSA 246 PY + P P+N P+ GE+ SA Sbjct: 286 RPIHPYTKALVAAIPEPDPSNRKKLREVPIKGEIPSA 322 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 68.6 bits (166), Expect = 1e-13 Identities = 67/210 (31%), Positives = 99/210 (47%), Gaps = 28/210 (13%) Query: 31 VYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFKG-QPFTPLSIDERARLG------IT 83 + V+GPNGAGK++L I+GL + GEIL +G P +P R+G + Sbjct: 31 ILGVLGPNGAGKTTLLKTILGL--VKPSAGEILVEGVNPRSPGFEKLLPRIGYVPELPVV 88 Query: 84 LAWQEP-------ARFDGLSVREYLRLSARGHTEEEAAEALSLVGLDPARYLDRKVDQSL 136 W P AR +G Y + AR A EAL +VGL A + + + L Sbjct: 89 PLWTTPCILLETLARLEG-----YTSVEAR----VRAREALEVVGL--AGECETPIGK-L 136 Query: 137 SGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYLKDRGTTVVLVTHSAQ 196 S G RKRV +A L +LDEP SG+D + V R+ L+ + G TV++ +H + Sbjct: 137 SKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAREGATVIVSSHILR 196 Query: 197 VLRQADRGFLLCNGTLLREGTVEEILPYFS 226 L L+ L G++EE+ + S Sbjct: 197 ELEDIATHVLVLKTDQLFYGSIEELRAWLS 226 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 67.0 bits (162), Expect = 4e-13 Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 19/213 (8%) Query: 19 LDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGL----PGYREIEGEILFKGQPFTPLSI 74 LD + L + G +++++GPNGAGK++L ++ L G+ + G + + + Sbjct: 29 LDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVRE------AN 82 Query: 75 DERARLGITLAWQEP-----ARFDGLSVREYLRLSARGHTEEEAAEALSLVGLDPARYLD 129 + R+R+G+ L + + +D L L + E L +VGL+ ++ Sbjct: 83 NVRSRIGVVLGGERALYWRLSGWDNLWFFSQLYGIPPREAKRRVKELLEIVGLEEWAHVR 142 Query: 130 RKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYLKDRGTTVV 189 ++ S G ++R+ +A + P + LLDEP G+D A + +I + G TV+ Sbjct: 143 V---ENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVL 199 Query: 190 LVTH-SAQVLRQADRGFLLCNGTLLREGTVEEI 221 L TH + +DR ++ G ++ EG E++ Sbjct: 200 LTTHYMVEAEELSDRVAIISKGRIVAEGPPEDL 232 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 67.0 bits (162), Expect = 4e-13 Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 25/235 (10%) Query: 19 LDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGL--PGYREIEGEILFKGQP---FTPLS 73 ++D+S I G Y +VG G GKS + + L P R +EG+I + +P +S Sbjct: 29 IEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGRIVEGKIYYYPEPGRRVDIMS 88 Query: 74 IDERARLGI-----TLAWQEP-ARFD-----GLSVREYLRLSARGHTEEE----AAEALS 118 +DE+ I +Q+P A D G V E + R + E A L Sbjct: 89 LDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETMLAHGRVRSLREGVRRAVGVLK 148 Query: 119 LVGLDPARYLDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLI 178 V + + LSGG ++R + ++ RP L + DEP + +D+ +I L+ Sbjct: 149 TVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLIADEPTTALDVTIQAQIMDLL 208 Query: 179 GYLK-DRGTTVVLVTHS-AQVLRQADRGFLLCNGTLLREGTVEEILPYFSSRCYP 231 LK + G T++L+TH+ V DR ++ G ++ E V+E+ FS+ +P Sbjct: 209 TQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEEAPVDEL---FSNPLHP 260 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 66.2 bits (160), Expect = 7e-13 Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 22/207 (10%) Query: 18 ILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGL------PGYREIEGEILFKGQPFTP 71 +L D+++ + G V AVVG +GAGK++L +I+G GYR G + Sbjct: 455 VLKDVNITVNPGSVAAVVGASGAGKTTLLRMILGKALGIGGEGYRPDSGVV--------- 505 Query: 72 LSIDERARLGITLAWQEPARFDGLSVREYLRLSARGHTEEEAAEALSLVGLDPARYLDRK 131 I + L + F G ++ E+ ++++ A E LS VGL A + R Sbjct: 506 -KIPTNTKAAALLPGELEPSFGGETLLEH--VASKLGDPGAAVEVLSSVGLGDAIFF-RA 561 Query: 132 VDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYL-KDRGTTVVL 190 LS G+++R +LA+++A RP L ++DE + +D RI +G L + +G T+++ Sbjct: 562 SFGELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLTARRIARKLGKLARSKGITLIV 621 Query: 191 VTHSAQVL--RQADRGFLLCNGTLLRE 215 T+ ++L Q D L+ G+ +E Sbjct: 622 STNRPEILDALQPDTVILVGYGSAFQE 648 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 65.9 bits (159), Expect = 9e-13 Identities = 58/213 (27%), Positives = 101/213 (47%), Gaps = 11/213 (5%) Query: 15 GKPI-LDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFKGQPFTPLS 73 GK + L + L+I+ G ++GP+G GK++ ++ GL R G + F G+ T L Sbjct: 14 GKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLE--RPDAGRVYFDGRDVTGLP 71 Query: 74 IDERARLGITLA---WQEPARFDGLSVREYLRLSARGHTEEEAAEALSLVGLDPARYLDR 130 +R + + W FD ++ ++ R A L+ +D LDR Sbjct: 72 PKDRNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAAELLEID--HLLDR 129 Query: 131 KVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYLKDR-GTTVV 189 Q LSGG+++RV +A + P + L+DEP S +D ++ I L+ R G T++ Sbjct: 130 YPHQ-LSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKLQRRLGVTMI 188 Query: 190 LVTH-SAQVLRQADRGFLLCNGTLLREGTVEEI 221 VTH + + DR ++ G + + GT ++ Sbjct: 189 YVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDV 221 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 65.9 bits (159), Expect = 9e-13 Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 14/221 (6%) Query: 15 GKPILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFKGQPFTPLSI 74 G+ + +S + G ++GPNG+GK++L ++ G+ R G + G Sbjct: 16 GRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGV--LRPSGGSVRVCGYDVWGDGW 73 Query: 75 DERARLGITLAWQEPARFDGLSVREYLRLS------ARGHTEEEAAEALSLVGLDPARYL 128 E AR I A Q+P ++ EY+ + + G EA L ++G + L Sbjct: 74 RE-ARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREARRVLEMLGFEDV--L 130 Query: 129 DRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYLKDRGTTV 188 R V + LSGG+R+ + +A +A P + +LDEP SG+D+ A E ++ + +G TV Sbjct: 131 GRVVAR-LSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASL-RKAFKGRTV 188 Query: 189 VLVTHSAQVLR-QADRGFLLCNGTLLREGTVEEILPYFSSR 228 + +H Q ++DR ++ G L G E++ ++ + Sbjct: 189 LFSSHDPQEAEAESDRVLIMHRGRLAAWGKPRELIQRYAPK 229 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 65.1 bits (157), Expect = 2e-12 Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 17/212 (8%) Query: 14 EGKPILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFK---GQPFT 70 +G+P+L +SL ++ G ++ + G NGAGK++ V++GL E +L G F Sbjct: 25 KGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPWGGGF- 83 Query: 71 PLSIDERARLGITLAWQEPARFDGLSVREYLRLSARGHT-----EEEAAEALSLVGLDPA 125 ER + + ++ + ++ L+ E + AR ++ EE A+ GL Sbjct: 84 -----ERVKGEVGYLPEDASVYERLTGMENILFYARLYSGWRDVEELVENAVFYSGLSRE 138 Query: 126 RYLDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYLKDRG 185 R S G ++R+ L + +P L +LDEP SGVD A RI ++ L G Sbjct: 139 DLARRA--GGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSREG 196 Query: 186 TTVVLVTHSAQVLRQ-ADRGFLLCNGTLLREG 216 +++ TH + + ADR ++ G+ + G Sbjct: 197 RAILVTTHDLALAEEIADRVTIIHGGSTVASG 228 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 64.3 bits (155), Expect = 3e-12 Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 13/222 (5%) Query: 6 IRHLSLTKEGKPILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFK 65 + L++ G+P+L ++L+ + ++GPNGAGK++ I+GL + G + Sbjct: 5 VEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGL--IKPARGRVFLD 62 Query: 66 GQPFTPLSIDERARLGITLAWQEPA--RFDGLSVREY----LRLSARGHTEEEAAEALSL 119 G F E Q P+ + ++VRE+ LRL E A E L Sbjct: 63 G--FEATGRPEMVGRYAGYVPQNPSAPKLSPMTVREFVETSLRLRGVTRARERAVEVLHT 120 Query: 120 VGLDPARYLDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIG 179 +G+ L+ ++ LS G +RV +A +A P + ++DEP + VD I +I Sbjct: 121 LGI-RGEVLESRL-WELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIA 178 Query: 180 YLKDRGTTVVLVTHSAQVLRQADRGFLLCNGTLLREGTVEEI 221 L R V++ +H +L ++ N L+ G EE+ Sbjct: 179 GLA-RERLVLMTSHDPSLLLGHTDIIVVINRDLIASGPPEEV 219 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 63.9 bits (154), Expect = 4e-12 Identities = 58/239 (24%), Positives = 105/239 (43%), Gaps = 38/239 (15%) Query: 6 IRHLSLTKEGKPILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFK 65 ++ L T+ +D++++ I G +VG +G+GK++ VI+ L G I F Sbjct: 39 VKSLFFTRAYVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLE--EPTGGRIFFD 96 Query: 66 GQPFTPL---------------------SIDERARLGITLAWQEPARFDGLSVREYLRLS 104 G L S++ R + +A EP + G+ V Sbjct: 97 GIDVMKLRGRGLKEFRRRAQIIFQDPYGSLNPRKTIFNLIA--EPIKVHGIKV------- 147 Query: 105 ARGHTEEEAAEALSLVGLDPARYLDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDS 164 G +E L VGL+ + SGG+R+R+ +A V+A++P +LDEP S Sbjct: 148 --GDLQEYIVSLLYQVGLNETHLY--RYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTS 203 Query: 165 GVDIDAVERIFGLIGYLKDR-GTTVVLVTHSAQVLR-QADRGFLLCNGTLLREGTVEEI 221 +D+ +I L+ L+ + T + ++H V+R +D ++ G ++ G EE+ Sbjct: 204 ALDVSVQAQILNLLKDLQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEV 262 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 57.8 bits (138), Expect = 3e-10 Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 22/185 (11%) Query: 29 GYVYAVVGPNGAGKSSLAAVIMG--LPGYREIEG------EIL--FKG---QPFTPLSID 75 G V ++G NG GK++ ++ G P +EG EIL F+G Q + +D Sbjct: 106 GQVVGLLGRNGTGKTTALRILAGELKPNLGRVEGGEPEWDEILKRFRGSELQTYFRKLVD 165 Query: 76 ERARLGITLAWQE--PARFDGLSVREYLRLSARGHTEEEAAEALSLVGLDPARYLDRKVD 133 + R+ + + E P R G VR+ L+ R A E VGLD + DR V Sbjct: 166 GKLRVAHKIQYVELVPRRLKG-RVRDLLK---RADERGVALELAEQVGLD--KVFDRDVR 219 Query: 134 QSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYLKDRGTTVVLVTH 193 Q LSGGE +++ + AV++ + + DEP S +DI R+ LI G V++V H Sbjct: 220 Q-LSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAARPGAYVMVVEH 278 Query: 194 SAQVL 198 VL Sbjct: 279 DLAVL 283 Score = 50.1 bits (118), Expect = 5e-08 Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 30/205 (14%) Query: 29 GYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEILFKGQPFTPLSIDERARLGITLAWQE 88 G V V GPNG GK++ + G + +EG + P+ E R+ + Sbjct: 383 GEVIGVAGPNGIGKTTFVRTLAG--ALKPVEGAVY----PYV-----EDLRVSYKPQYIS 431 Query: 89 PARFDGLSVREYLRLSARGHTEEEAAEALSLVG---LDPARYLDRKVDQSLSGGERKRVE 145 P +V + L+ + + L LV LD + L+R+V ++LSGGE ++V Sbjct: 432 PESLPDATVEQVLKAANPAILAPGSWLNLELVKRMRLD--KLLERRV-RTLSGGELQKVA 488 Query: 146 LAAVVAMRPTLALLDEPDSGVDID-------AVERIFGLIGYLKDRGTTVVLVTHSAQVL 198 +AA +A + LLDEP + +D++ A+ RI ++ R ++V H +L Sbjct: 489 VAAALAREADVYLLDEPSAYLDVEERVGVARAIRRI------VETREAAALVVEHDLMIL 542 Query: 199 RQADRGFLLCNGTLLREGTVEEILP 223 +L G G V++ P Sbjct: 543 DYVSDRIMLVTGEPGVRGHVDDPRP 567 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 57.0 bits (136), Expect = 4e-10 Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 20/212 (9%) Query: 19 LDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLPGYREIEGEI-LFKGQPFTPLSIDER 77 L +S + +G V+ +GPNGAGK++ V+MG R G +F + + P + R Sbjct: 20 LRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFS--RPTSGSARVFGVELYNPGASGVR 77 Query: 78 ARLGITLAWQEPARFD------GLSVREYLRLSARGHTEEEAAEALSLVGLDPARYLDRK 131 R+G P F+ G + +Y G + E L L L+R Sbjct: 78 RRVGYV-----PGEFEFYGGVSGGRMLDYWCRLVGGCSRGVVRELLEAFPLP----LERA 128 Query: 132 VDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYLKDRGTTVVLV 191 V + S G ++ + L + P L ++DEP +G+D A R+ + G TV Sbjct: 129 VG-TYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDFVRSKAREGVTVFFS 187 Query: 192 TH-SAQVLRQADRGFLLCNGTLLREGTVEEIL 222 +H ++V R ADR LL +G L+ V +L Sbjct: 188 SHVLSEVQRVADRVGLLRSGVLVALEDVSSLL 219 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 52.0 bits (123), Expect = 1e-08 Identities = 64/215 (29%), Positives = 100/215 (46%), Gaps = 31/215 (14%) Query: 18 ILDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGLP-----GYREIEGEILFKGQP-FTP 71 +L +SL+ G + + GP G GKS++ V GL GY + GE+ +G+P P Sbjct: 19 VLRGVSLEAPRG-ITLLAGPTGGGKSTILRVAAGLATRIYGGY--LRGEVEARGKPVLVP 75 Query: 72 LSIDERARLGITLAWQEPARF----DGLSVREYLRLSARGHTEEEAAEALSLVGLDPARY 127 D ++L +E + GL E R + R AE L + L Sbjct: 76 QDYD---LFILSLTPREELEYCYEASGLPPWEARREAVR------LAEELGIEDL----- 121 Query: 128 LDRKVDQSLSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYLKDRGTT 187 LDR+V + LS GER+RV +A+ +A+ + L+DEP + D VE + L+ L G Sbjct: 122 LDRRVSK-LSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVESLIRLLRRLDVEG-- 178 Query: 188 VVLVTHSAQ-VLRQADRGFLLCNGTLLREGTVEEI 221 VV+ H +L A +L+ +G + G E + Sbjct: 179 VVVAEHRVHYLLPAASSVYLVYDGRAKQLGPGEAV 213 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 47.4 bits (111), Expect = 3e-07 Identities = 57/208 (27%), Positives = 88/208 (42%), Gaps = 31/208 (14%) Query: 19 LDDLSLDIEAGYVYAVVGPNGAGKSSLAAVIMGL--PGYREIEGEILFKGQPFTPLSIDE 76 L D++L I G V A++G NG+GK++L + L P +EG Sbjct: 7 LRDVTLSIPRG-VTAILGANGSGKTTLLKLAARLLKPDRGSVEGP--------------- 50 Query: 77 RARLGITLAWQEP-ARFDGLSVREYLRLSARGHTEEEAAEALSLVGLDPARYLDRKVDQS 135 R+G L Q P F G +V E L +A G EAL L+ Y + + Sbjct: 51 -RRVGAAL--QNPYLGFLGPTVAEDLARTAGGR-----GEALKLLREAGLEYASERSPYT 102 Query: 136 LSGGERKRVELAAVVAMRPTLALLDEPDSGVDIDAVERIFGLIGYLKDRGTTVVLVTHSA 195 LS GE + + + ++ P ++DEP SG+D + LI L G V++ H Sbjct: 103 LSMGEARILSVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLIARL---GVPVLVAGHDI 159 Query: 196 Q-VLRQADRGFLLCNGTLLREGTVEEIL 222 A +L +G + G +E +L Sbjct: 160 DFAAAVAGWAVILRDGRVRVSGDMERVL 187 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 281,404 Number of Sequences: 1700 Number of extensions: 13939 Number of successful extensions: 162 Number of sequences better than 1.0e-04: 40 Number of HSP's better than 0.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 79 Number of HSP's gapped (non-prelim): 45 length of query: 246 length of database: 492,079 effective HSP length: 74 effective length of query: 172 effective length of database: 366,279 effective search space: 62999988 effective search space used: 62999988 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719207|ref|YP_003874739.1| iron-regulated ABC transporter membrane subunit [Spirochaeta thermophila DSM 6192] (317 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601570|ref|NP_148110.1| FeS assembly protein SufB [Aeropyru... 52 1e-08 >gi|14601570|ref|NP_148110.1| FeS assembly protein SufB [Aeropyrum pernix K1] Length = 476 Score = 52.4 bits (124), Expect = 1e-08 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 244 APGARGHVDCKEIV-QDRAVARAVPLIQVEDPAAHITHEAAIGSVDSKQLQTLMARGLTE 302 A A +V+C+ ++ D++ A P QV++P A + HEA G + QL L +RGLTE Sbjct: 375 ARNAVANVECESLILDDKSKAHTYPHNQVDEPTASVNHEATTGRLTEPQLFYLTSRGLTE 434 Query: 303 EEATDVII 310 EEA +I+ Sbjct: 435 EEAKSLIV 442 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 317,434 Number of Sequences: 1700 Number of extensions: 14840 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 2 length of query: 317 length of database: 492,079 effective HSP length: 77 effective length of query: 240 effective length of database: 361,179 effective search space: 86682960 effective search space used: 86682960 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719208|ref|YP_003874740.1| hypothetical protein STHERM_c15270 [Spirochaeta thermophila DSM 6192] (189 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.132 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 180,578 Number of Sequences: 1700 Number of extensions: 7585 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 189 length of database: 492,079 effective HSP length: 72 effective length of query: 117 effective length of database: 369,679 effective search space: 43252443 effective search space used: 43252443 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719209|ref|YP_003874741.1| hypothetical protein STHERM_c15280 [Spirochaeta thermophila DSM 6192] (511 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 586,119 Number of Sequences: 1700 Number of extensions: 28807 Number of successful extensions: 68 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 0 length of query: 511 length of database: 492,079 effective HSP length: 81 effective length of query: 430 effective length of database: 354,379 effective search space: 152382970 effective search space used: 152382970 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719210|ref|YP_003874742.1| hypothetical protein STHERM_c15290 [Spirochaeta thermophila DSM 6192] (244 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.132 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 232,964 Number of Sequences: 1700 Number of extensions: 10176 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 244 length of database: 492,079 effective HSP length: 74 effective length of query: 170 effective length of database: 366,279 effective search space: 62267430 effective search space used: 62267430 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719211|ref|YP_003874743.1| hypothetical protein STHERM_c15300 [Spirochaeta thermophila DSM 6192] (444 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600923|ref|NP_147448.1| hypothetical protein APE_0727 [Aero... 75 2e-15 gi|118431096|ref|NP_147308.2| hypothetical protein APE_0536.1 [A... 68 4e-13 >gi|14600923|ref|NP_147448.1| hypothetical protein APE_0727 [Aeropyrum pernix K1] Length = 284 Score = 75.5 bits (184), Expect = 2e-15 Identities = 73/273 (26%), Positives = 123/273 (45%), Gaps = 42/273 (15%) Query: 116 PLTGPYDSRDPDLIEYQLLLMKMAGIDGVIVDWYGIKDALDYGFIHEATQALFQKIEEAG 175 P+ G YDSRD +I++QL M+ AGID + + W+G GF EA + +F + + G Sbjct: 2 PVIGLYDSRDVRVIDWQLQRMREAGIDCLFISWWG-----PGGFEDEAARRVFWRAQLYG 56 Query: 176 LKFVVCYEDQTIRHMIDTDYIKSTEAVDHGKEVFSWLEANWFQ--SPSYVKIEGRPVVMV 233 LK + E + D + A ++ ++++ N+ +Y++++G+P+V+ Sbjct: 57 LKAAIFVEP-----YLGNDPSRYDRA--FWEQTLAYIKQNFIDRYPGAYLRLDGKPLVLA 109 Query: 234 FGPQYFTSASEWDAIFSGLAVRPYLVTLDAHLENAADTLYPWPPMYLSGGGELSILNVVD 293 F P D F G A+R +V D D Y WP + GEL + Sbjct: 110 FNPIGLAYDPRPD--FPGYAIR--IVGNDIDSAGYQDWDY-WPDYDNALSGELRVRR--- 161 Query: 294 YLNGFYAKTNQKEHLIATAFPRFH-DIYREAGVGPSYGYLADLAGGTFHVTFIAAVRAVP 352 +G+ T PR+ D +R G+ Y DL+ G + + +R + Sbjct: 162 --DGYVVLT-----------PRYRDDHFRSPGLSIDY----DLSQGWYERQWEWVLRNLD 204 Query: 353 DI--VQIATWNDYGEGTVIEPTEEYGYRDLEYL 383 + + I +WN+Y E T IEP + +D YL Sbjct: 205 RVRLIAITSWNEYHENTFIEPANDPAIKDPYYL 237 >gi|118431096|ref|NP_147308.2| hypothetical protein APE_0536.1 [Aeropyrum pernix K1] Length = 327 Score = 68.2 bits (165), Expect = 4e-13 Identities = 74/272 (27%), Positives = 121/272 (44%), Gaps = 55/272 (20%) Query: 116 PLTGPYDSRDPDLIEYQLLLMKMAGIDGVIVDWYGIKDALDYGFIHEATQALFQKIEEAG 175 PL G YDSRDP ++++QL L+ AG+D + V W+G F EA++ +FQ++ E G Sbjct: 28 PLLGYYDSRDPVVVDWQLGLISDAGVDCLFVSWWG-----PGSFEDEASRLVFQRLGEHG 82 Query: 176 LKFVVCYEDQTIRHMIDTDYIKSTEAVDHGK----EVFSWLEANWFQ--SPSYVKIEGRP 229 LK + E +A +G+ E ++ N+ + S SY+ EGRP Sbjct: 83 LKAAILVEPYL-----------GGDAGLYGRGWWEETLDYVYENFVEKYSESYLSWEGRP 131 Query: 230 VVMVFGPQYFTSASEWDAIFSGLAVRPYLVTLD----AHLENAADTLYPWPPMYLSGGGE 285 +V+ F P + + +R +D H + D L PW + Sbjct: 132 LVLAFNP----IGMSYRPLDPRFTIRIVGNDIDRAGYQHWDLWPDYLAPWV------AEK 181 Query: 286 LSILNVVDYLNGFYAKTNQKEHLIATAFPRFHD-IYREAGVGPSYGYL---ADLAGGTFH 341 ++L V +G+ A T PRF D ++ EAGV G D A + Sbjct: 182 DAVLRVRG--DGYVAIT-----------PRFDDRVFCEAGVRTGCGQRLIDPDYALNAYA 228 Query: 342 VTFIAAVRAVPDI--VQIATWNDYGEGTVIEP 371 + + +R + + V + +WN+Y E ++IEP Sbjct: 229 IQWEWVLRNMDRVRLVAVYSWNEYHERSMIEP 260 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 480,206 Number of Sequences: 1700 Number of extensions: 22736 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 3 length of query: 444 length of database: 492,079 effective HSP length: 80 effective length of query: 364 effective length of database: 356,079 effective search space: 129612756 effective search space used: 129612756 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719212|ref|YP_003874744.1| hypothetical protein STHERM_c15310 [Spirochaeta thermophila DSM 6192] (256 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 311,517 Number of Sequences: 1700 Number of extensions: 15257 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 0 length of query: 256 length of database: 492,079 effective HSP length: 75 effective length of query: 181 effective length of database: 364,579 effective search space: 65988799 effective search space used: 65988799 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719213|ref|YP_003874745.1| kojibiose phosphorylase [Spirochaeta thermophila DSM 6192] (727 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 849,824 Number of Sequences: 1700 Number of extensions: 41962 Number of successful extensions: 85 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85 Number of HSP's gapped (non-prelim): 0 length of query: 727 length of database: 492,079 effective HSP length: 84 effective length of query: 643 effective length of database: 349,279 effective search space: 224586397 effective search space used: 224586397 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719214|ref|YP_003874746.1| kojibiose phosphorylase [Spirochaeta thermophila DSM 6192] (772 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 784,690 Number of Sequences: 1700 Number of extensions: 34812 Number of successful extensions: 86 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86 Number of HSP's gapped (non-prelim): 0 length of query: 772 length of database: 492,079 effective HSP length: 84 effective length of query: 688 effective length of database: 349,279 effective search space: 240303952 effective search space used: 240303952 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719215|ref|YP_003874747.1| transporter [Spirochaeta thermophila DSM 6192] (288 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 101 2e-23 gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyru... 72 1e-14 gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum... 56 9e-10 gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease... 50 7e-08 gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 47 4e-07 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 101 bits (252), Expect = 2e-23 Identities = 70/268 (26%), Positives = 123/268 (45%), Gaps = 12/268 (4%) Query: 15 LRSPVVLMGYIGLILLCXXXXXXXXXPILWLFFASFKDIREFVREP--TFLPRSFDFSRF 72 LR VVL+ LL P + LF S + E + + + +F + Sbjct: 11 LRVDVVLIN-----LLAWGFALVWLLPFIGLFMVSVRPYGEVIVKGWWNIVDATFTMDNY 65 Query: 73 VKTWN--DLKFVRYYRNSLISVTGCVISAVFFNGLLAYALSKVRPRGSKLVFTLVLWSLL 130 +K W+ Y NSLI + V AY S+ +F + + + Sbjct: 66 IKAWSYDPYSVSGGYINSLIVALPATVIPVAAASFAAYGFSRFSFPLKSYLFLVTILLMA 125 Query: 131 IPPTTSIVPLFMNIVRLGMVGTFFPIWFSFGA--NAFYVILFKNFFDTIPQSLVEASRLD 188 +P +VPLF+ + LG++ TF I A A+ + KNFFD +P+ + EA+R+D Sbjct: 126 LPQQIVVVPLFLLLKNLGLINTFPGIILVHSAWGMAWIIFFMKNFFDILPREVEEAARVD 185 Query: 189 GCNEFQIFRRVVLPLSRPIVMVVVIYAVNAAWSDFLLPYLVLTNSGLETVMVRLFQFRGS 248 G ++F+IF ++VLP+S P ++ + WS F + L + + R+ +G+ Sbjct: 186 GASDFRIFYKIVLPMSLPGILSASVLQFTWVWSSFFFELIFLIDPSKWVITQRIANMKGT 245 Query: 249 YTTEVDILRA-IVFAVIPPVVLFVLFQK 275 Y + ++ A VFA+ P+ +++L Q+ Sbjct: 246 YLVDWGLIAAGSVFAMAVPLAVYMLLQR 273 >gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyrum pernix K1] Length = 302 Score = 72.4 bits (176), Expect = 1e-14 Identities = 61/215 (28%), Positives = 108/215 (50%), Gaps = 17/215 (7%) Query: 88 SLISVTGCVISAVFFNGLLAYALSKVRPRGSKLVFTLVLWSLLIPPTTSIVPLFMNIVR- 146 +L G ++A + L AY++S++ +G + VFT L L P +++ I R Sbjct: 91 TLTVAVGVALTATLVSLLAAYSISRMEFKG-RGVFTAGLIMLHAFPGVALIIGVYMIFRI 149 Query: 147 ----LGMVGT-FFPIWFSFGANAFYVI-----LFKNFFDTIPQSLVEASRLDGCNEFQIF 196 LG++G F+ I + A A + LFK FFD IP L ++ +DG + +++ Sbjct: 150 IGDVLGVLGEEFYAIAYIILARAALEVPMAIWLFKGFFDKIPWELEWSALVDGASRVRVW 209 Query: 197 RRVVLPLSRPIVMVVVIYAVNAAWSDFLLPYLVLTNSGLE---TVMVRLFQFRGSYTTEV 253 +++PL +P + V+I+ A W +F+ Y+ L G++ T + + +Y + Sbjct: 210 WSILVPLVKPGIAAVLIFTFLAGWEEFIYFYVFLKPFGIDSLPTFIEEIVAAAENYQLTI 269 Query: 254 DILRAIVFAVIPPVVLFVLFQKQITEMAAHSGIKG 288 I A F ++P +V FVL Q+ + E A G+KG Sbjct: 270 -IAAAGTFYLLPTIVFFVLTQRLLLE-AYSGGLKG 302 >gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum pernix K1] Length = 270 Score = 56.2 bits (134), Expect = 9e-10 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 10/192 (5%) Query: 90 ISVTGCVISAVFFNGLLA-YALSKVRPRGSKLVFTLVLWSLLIPPTTSIVPLFMNIVRLG 148 ++V + F GL YAL++ G V ++ + + P V L LG Sbjct: 73 VAVGAMTVGISFLLGLPGGYALARYVFPGRDAVKLAIIATRMFPIIVISVSLLKTFFNLG 132 Query: 149 MVGTFFPIWFSFGANA--FYVILFKNFFDTIPQSLVEASRLDGCNEFQIFRRVVLPLSRP 206 + T + + A A F VI+ + F IP+ L EA + G + +F R+ LPL+ P Sbjct: 133 LNDTLIGLALAHTAMALPFVVIITGSIFGGIPRDLEEAGMIFGLSSIMVFLRITLPLAAP 192 Query: 207 IVMVVVIYAVNAAWSD-FLLPYLVLTNSGLETVMVRLFQFRGSYTTEVDILR-AIVFAVI 264 + ++ +W++ F+ L L N L F ++ T ++ +R A F +I Sbjct: 193 GLTAAGMFTFLLSWNEVFMASVLTLVNRTLPA-----FILNSAFATPIEPIRFAAAFMLI 247 Query: 265 PPVVLFVLFQKQ 276 P ++F+ ++ Sbjct: 248 LPALVFMFLARR 259 >gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease ModB [Aeropyrum pernix K1] Length = 261 Score = 50.1 bits (118), Expect = 7e-08 Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 15/197 (7%) Query: 83 RYYRNSLISVTGCVISAVFFNGLL---AYALSKVRPRGSKLVFTLVLWSLLIPPT---TS 136 R+ R+ ++S+ IS+V L AYA+++ R ++L+ L L L IPP T+ Sbjct: 43 RFRRSLVLSLGSSTISSVLAVTLATAPAYAMARQEGRLTRLISQLHLLLLSIPPVGLGTA 102 Query: 137 IVPLFMNIVRLGMVGTFFPIWFSFGA---------NAFYVILFKNFFDTIPQSLVEASRL 187 + LF L + ++FS A V + F +P+ L EA+ Sbjct: 103 ALILFTRYPPLNSISETLGLFFSPKAVILAQLLVTTPIAVSMLTGVFSMVPRELEEAAEA 162 Query: 188 DGCNEFQIFRRVVLPLSRPIVMVVVIYAVNAAWSDFLLPYLVLTNSGLETVMVRLFQFRG 247 G QI R+VLPLS P ++ + A +F ++ N T + L + Sbjct: 163 YGAGRLQILIRIVLPLSLPGILSALAVTFFRALGEFGATLVLAGNIPGRTETLPLALYNA 222 Query: 248 SYTTEVDILRAIVFAVI 264 +V+ AI V+ Sbjct: 223 ISLADVETASAIYTLVL 239 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 47.4 bits (111), Expect = 4e-07 Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 33/145 (22%) Query: 97 ISAVFFNGL-LAYALSKVRPRGSKLVFTLVLWSLLIPPTTS-------------IVPLF- 141 I V F GL LAY L GS +V T+V ++IP +VPL Sbjct: 88 IPLVTFLGLFLAYLLKYTF--GSSIVKTIVFIGMVIPMVVGGLIVRFMFDEYVGVVPLVF 145 Query: 142 --MNIVRLGMVGTFFP-----------IWFSFGANAFYVILFKNFFDTIPQSLVEASRLD 188 + + L T +P +W G F + ++ +IP S +EA+R+D Sbjct: 146 KALGVDFLAKTWTNYPQLSLLSLILGSVWLWTG---FSLTVYSAALGSIPSSFIEAARID 202 Query: 189 GCNEFQIFRRVVLPLSRPIVMVVVI 213 G + IF ++V PL RP ++VV+ Sbjct: 203 GAGHWHIFWKIVFPLVRPATIIVVV 227 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.334 0.147 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 257,524 Number of Sequences: 1700 Number of extensions: 10026 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 5 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 6 length of query: 288 length of database: 492,079 effective HSP length: 76 effective length of query: 212 effective length of database: 362,879 effective search space: 76930348 effective search space used: 76930348 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719216|ref|YP_003874748.1| transporter [Spirochaeta thermophila DSM 6192] (326 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 79 2e-16 gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum... 75 2e-15 gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyru... 54 4e-09 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 78.6 bits (192), Expect = 2e-16 Identities = 72/284 (25%), Positives = 121/284 (42%), Gaps = 37/284 (13%) Query: 46 LLMLPTVVLFAFFVWEPLLESIRLSLYSAKGVRLQEFVGF-------KNYVDVVRHPDF- 97 + +LP FV P + ++ LSL + L+++ K + + P+ Sbjct: 13 VFLLPAFTFITIFVIAPSIATVYLSLNVDGHINLEKYAEVVSERSPDKALIMITSRPESP 72 Query: 98 -WAAVRNTFLY--------TFWSLVIGFMVPIVMAVSINEMFAFRSFYKIGVYLPNVVPG 148 W A+ + ++ TF L + +++ SI + F IG+ +P VV G Sbjct: 73 PWGALIHNIIWMALHIPLVTFLGLFLAYLLKYTFGSSIVKTIVF-----IGMVIPMVVGG 127 Query: 149 MATVLLWAFLFRPGETGALNILLGKLG--YPPQPWLSNPQWTIPLIVATLTWKSAGATTL 206 L+ F+F G + ++ LG + + W + PQ ++ ++ W G + Sbjct: 128 ----LIVRFMFDE-YVGVVPLVFKALGVDFLAKTWTNYPQLSLLSLILGSVWLWTGFSLT 182 Query: 207 IYIAGLQGIPSELYEASIIDGAGIWARVRHITIPQIFNLARTXXXXXXXXXXXXXYE--- 263 +Y A L IPS EA+ IDGAG W HI +F L R + Sbjct: 183 VYSAALGSIPSSFIEAARIDGAGHW----HIFWKIVFPLVRPATIIVVVMTMLWDLKIFD 238 Query: 264 -PLVMTNGGPNNASVSLMLLVFRYAFEKYDYPKAGAVSVIISLI 306 V T GGP +S L L++++Y DY A AV+VI++L+ Sbjct: 239 IVYVATLGGPGGSSNVLALVMYQYMARALDYQAASAVAVILTLL 282 >gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum pernix K1] Length = 288 Score = 75.5 bits (184), Expect = 2e-15 Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 10/202 (4%) Query: 45 WLLMLPTVVLFAFFVWEPLLESIRLSLYSAKGVRLQEFVGFKNYVDVVRHPDFWAAVRNT 104 WLL+ PT++ A F+ P+++S R++ + E V F Y + +FW+A++ T Sbjct: 15 WLLLSPTILYLAVFIAYPIIDSFRIAFVKNGSISF-EAVDFLLYSPL---SEFWSALKYT 70 Query: 105 FLYTFWSLVIGFMVPIVMAVSINEMFAFRSFYKIGVYLPNVVPGMATVLLWAFLFRPGET 164 FL + ++ + + + + F R + +P + +A L+W + Sbjct: 71 FLLAILVIPTETLLALTAVILLFKRFRGRDAVIYVLVMPLALSDLAAGLIWYSMLTG--K 128 Query: 165 GALNILLGKLGYPPQPWL----SNPQWTIPLIVATLTWKSAGATTLIYIAGLQGIPSELY 220 G LN LL +G P + N T + W+S +I AG Q I E++ Sbjct: 129 GFLNKLLLNMGLISDPIIFFGYENRWLTFLAVYLAEVWRSTAIVFVILFAGAQLINKEVF 188 Query: 221 EASIIDGAGIWARVRHITIPQI 242 EA+ + GA + ++RHI IP I Sbjct: 189 EAAEVFGASFYVKLRHILIPMI 210 >gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyrum pernix K1] Length = 314 Score = 54.3 bits (129), Expect = 4e-09 Identities = 50/208 (24%), Positives = 88/208 (42%), Gaps = 17/208 (8%) Query: 50 PTVVLFAFFVWEPLLESIRLSLYSAKG----VRLQEFVGFKNYVDVVRHPDFWAAVRNTF 105 P +++ F + PLL ++ S + + L + VG NY +V + RN Sbjct: 15 PALLIVITFFFLPLLLTVYTSFTNMRNWNVDAYLFDIVGLYNYKVLVHFAKYDPMFRNAL 74 Query: 106 LYTFWSLVIGFMVPIVMAVSINEMFAFRS-----FYKIGVYLPNVVPGMATVLLWAFLFR 160 + T + + +V ++ +++ + F Y++ LP + P LLW + F Sbjct: 75 ITTVVFVAVTLVVNVLGGLTLAILTFFLEERISIHYRLLWLLPRMTPVAVYSLLWYYFFH 134 Query: 161 PGETGALNILLGKLGYPPQP--W----LSNPQWTIPLIVATLTWKSAGATTLIYIAGLQG 214 G LN +L G +P W L W I + V L S G +++ + ++ Sbjct: 135 SDAIGTLNRILLLAGVIDKPINWGSYMLPLGTWWILIFVNGLVGVSFGM--IVFYSAIRS 192 Query: 215 IPSELYEASIIDGAGIWARVRHITIPQI 242 IP E A+ +DGA +R I +P I Sbjct: 193 IPWEYIAAARVDGASNLVIIRRIIVPMI 220 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.142 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 350,840 Number of Sequences: 1700 Number of extensions: 15803 Number of successful extensions: 63 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 3 length of query: 326 length of database: 492,079 effective HSP length: 77 effective length of query: 249 effective length of database: 361,179 effective search space: 89933571 effective search space used: 89933571 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719217|ref|YP_003874749.1| extracellular solute-binding protein [Spirochaeta thermophila DSM 6192] (465 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 479,838 Number of Sequences: 1700 Number of extensions: 23019 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 0 length of query: 465 length of database: 492,079 effective HSP length: 80 effective length of query: 385 effective length of database: 356,079 effective search space: 137090415 effective search space used: 137090415 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719218|ref|YP_003874750.1| hypothetical protein STHERM_c15370 [Spirochaeta thermophila DSM 6192] (622 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aero... 48 6e-07 gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad5... 43 3e-05 >gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aeropyrum pernix K1] Length = 791 Score = 48.1 bits (113), Expect = 6e-07 Identities = 86/400 (21%), Positives = 147/400 (36%), Gaps = 62/400 (15%) Query: 265 QVMEGMNRFVGALSRV--IASLRETVRLNREAGDLLFHGTQIADARVKRIGEELSTVLGE 322 +VM + R G LS+ +AS E + L+ G GT + A I +T E Sbjct: 337 EVMREIARAQGYLSKAQALASAAEVILLS---GPTTETGTAVETATETTITTITTTTTRE 393 Query: 323 VEELE--RVAGATSDAARGISQQIDRLE--EQVRSQTAMVEQXXXXXXXXXXXLRGVASL 378 EE E V ++ I + ++ LE +Q + E R + L Sbjct: 394 AEETEAAEVLAELTEVEIEIGELMEELETLQQKAASANQGEVQEILDEAGALIDRASSLL 453 Query: 379 AERDNAVALRLEGETREAREVVFAVGERIEQLGQWMDRVQRMVDVIKDVGDRTNIL---- 434 AE A +L EG EA+E + +E+ +D + +++V+++ +R Sbjct: 454 AE---ARSLLDEGRIAEAKEKIAQAEAALEKADSKLDTAEAILEVVEEYAERAREAIEEA 510 Query: 435 --AMNXXXXXXXXXXXXXXFSVVAQEIRKLAETATR---------------------EAE 471 A+ V + + +L E + EA Sbjct: 511 EEALAKAEAKLQLAAQLSGSEAVEEALNRLEEAKEKLEAAKEAYSNGRYGEAIVLAEEAA 570 Query: 472 GIHRGVLEMMDE-LRQIQEGSGRMLAAFGVMEGHIGEVSASFHEMHERIRESAAGSREIL 530 I E+ ++ + QE +L + + ++ ++ E+ RE+ + EI Sbjct: 571 SIAEEAKELAEKAIEAAQEAVSEVLNQVEELLDRVKDLQEEIEDIAEKAREAGVLTEEIQ 630 Query: 531 EAVEE-----------LRTASGLIKE-----SSQVLSGQRDVVREGSERLRRVAAGVREA 574 A++E L A L KE + Q L RDV+ E +R + + V +A Sbjct: 631 AAIDEVLGKLDQARSLLEEADSLAKEGDIDGARQKLGEARDVIEEAVSMVRDIRSMVEQA 690 Query: 575 MHRIAGESEELTRVADETALTAERLNRAGEVLE---REMG 611 I +EL R+ +E A LN +LE R MG Sbjct: 691 ---IGDLIDELRRLIEELREKAAELNTEAAMLEAKARRMG 727 Score = 46.6 bits (109), Expect = 2e-06 Identities = 81/408 (19%), Positives = 145/408 (35%), Gaps = 82/408 (20%) Query: 156 EERYAEALKTLELFYTVGETLSSSLDSSLAVFEEQKAFINEALDRTEQRXXXXXXXXXXX 215 E R AEA + + E S LD++ A+ E + + A + E+ Sbjct: 462 EGRIAEAKEKIAQAEAALEKADSKLDTAEAILEVVEEYAERAREAIEE-----------A 510 Query: 216 XXXXXXXXXXXXXXXXXXATERVVAGLSTLGTGDLSVRFKVEKVKDEFQQVMEGMNRFVG 275 +E V L+ L + K+E K+ + G Sbjct: 511 EEALAKAEAKLQLAAQLSGSEAVEEALNRLE----EAKEKLEAAKEAYSNGRYG------ 560 Query: 276 ALSRVIASLRETVRLNREAGDLLFHGTQIADARVKRIGEELSTVLGEVEELERVAGATSD 335 E + L EA + ++A+ ++ E +S VL +VEEL D Sbjct: 561 ----------EAIVLAEEAASIAEEAKELAEKAIEAAQEAVSEVLNQVEEL-------LD 603 Query: 336 AARGISQQIDRLEEQVRSQTAMVEQXXXXXXXXXXXLRGVASLAERDNAVALRLEGETRE 395 + + ++I+ + E+ R + E+ L SL E A +L EG+ Sbjct: 604 RVKDLQEEIEDIAEKAREAGVLTEEIQAAIDEVLGKLDQARSLLE--EADSLAKEGDIDG 661 Query: 396 AREVVFAVGERIEQLGQWMDRVQRMVDVIKDVGDRTNILAMNXXXXXXXXXXXXXXFSVV 455 AR ++LG+ D ++ V +++D+ S+V Sbjct: 662 AR----------QKLGEARDVIEEAVSMVRDIR------------------------SMV 687 Query: 456 AQEIRKLAETATREAEGIHRGVLEMMDELRQIQEGSGRMLAAFGVMEG--HIGEVSASFH 513 Q I L + R E + E+ E ++ + RM G E I E ++ Sbjct: 688 EQAIGDLIDELRRLIEELREKAAELNTEAAMLEAKARRM----GDREALRLIEEARSNIE 743 Query: 514 EMHERIRESA--AGSREILEAVEELRTASGLIKESSQVLSGQRDVVRE 559 E E+++++ G ++ EA E + A L+ E+ L R + E Sbjct: 744 EAIEKLQDATDKLGDGKLGEAREAIGQAEDLLNEAEMKLEEARQRLGE 791 Score = 45.8 bits (107), Expect = 3e-06 Identities = 68/285 (23%), Positives = 110/285 (38%), Gaps = 33/285 (11%) Query: 308 RVKRIGEELSTVLGEVEELERVAGATSDAARGISQQIDRLEEQVRSQTAMVEQXXXXXXX 367 R + EE L + E ++A S + + + ++RLEE A E Sbjct: 502 RAREAIEEAEEALAKAEAKLQLAAQLS-GSEAVEEALNRLEEAKEKLEAAKEAYSNGRYG 560 Query: 368 XXXXL-RGVASLAERDNAVALRLEGETREAREVVFAVGERIEQLGQWMDRVQRMVDVIKD 426 L AS+AE +A E A+E AV E + Q+ + +DRV+ + + I+D Sbjct: 561 EAIVLAEEAASIAEEAKELA---EKAIEAAQE---AVSEVLNQVEELLDRVKDLQEEIED 614 Query: 427 VGDRTNILAMNXXXXXXXXXXXXXXFSVVAQEIRKLAETATREA-EGIHRGVLEMMDELR 485 + ++ A + R L E A A EG G + + E R Sbjct: 615 IAEK----AREAGVLTEEIQAAIDEVLGKLDQARSLLEEADSLAKEGDIDGARQKLGEAR 670 Query: 486 QIQEGSGRMLAAF-GVMEGHIGEVSASFHEMHERIRESAA----------------GSRE 528 + E + M+ ++E IG++ + E +RE AA G RE Sbjct: 671 DVIEEAVSMVRDIRSMVEQAIGDLIDELRRLIEELREKAAELNTEAAMLEAKARRMGDRE 730 Query: 529 ILEAVEELRTASGLIKESSQVLSGQRDVVREGSERLRRVAAGVRE 573 L +EE R+ I+E+ + L D + +G R A G E Sbjct: 731 ALRLIEEARSN---IEEAIEKLQDATDKLGDGKLGEAREAIGQAE 772 >gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1] Length = 919 Score = 42.7 bits (99), Expect = 3e-05 Identities = 63/323 (19%), Positives = 126/323 (39%), Gaps = 19/323 (5%) Query: 306 DARVKRIGEELSTVLGEVEELERVAGATSDAARGISQQIDRL---EEQVRSQTAMVEQXX 362 D ++ + L + E EELER A A+ + +I +L EE + + T+M+ Sbjct: 218 DREIREASKRLEELEREREELERRARDLESEAKALQSEIGKLETMEEMLVNVTSMIRSER 277 Query: 363 XXXXXXXXXLRGVASLAERDNAVALRLEGETREAREVVFAVGERIEQLGQWMDRVQRMVD 422 LR S + + R E R + V E + +L +D++ R ++ Sbjct: 278 SKLDTINTRLRYAESKISSIDDLEKR-RAELRAKASLAHEVAE-LARLQSRLDKLGRDLE 335 Query: 423 VIKDVGDRTNI---LAMNXXXXXXXXXXXXXXFSVVAQEIRK--LAETATREAEGIHRGV 477 +I+D ++ + L S + +E R+ L + I + Sbjct: 336 MIRDAVEKLEVSRRLKEIESARREAENRLLEARSSIKEEQRRYTLLDYRVTRGRSIVTNI 395 Query: 478 LEMMDELRQIQE-GSGRMLAAFGVMEGHIGEVSASFHEMHERIRESAAGSREILEAVEEL 536 ++ E R GS + + ++ I ++ + + + A +R +++A+ L Sbjct: 396 RRVLSECRSKDLCGSEKPESVLERLDAVINDLESKARALDQEASALEAEARRLVQALSML 455 Query: 537 RTASGLIK---ESSQVLSGQRDVV----REGSERLRRVAAGVREAMHRIAGESEELTRVA 589 + G + +++ G+ + + R +ERLR+ A + E+ L Sbjct: 456 EESGGSARCPVCGAELPPGRAEAIARHYRHEAERLRKAAKEKAAEAEKARAEASRLQDKR 515 Query: 590 DETALTAERLNRAGEVLEREMGY 612 L RLN+ E L RE+G+ Sbjct: 516 RRIELLLSRLNQLEEGL-RELGF 537 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.133 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 498,080 Number of Sequences: 1700 Number of extensions: 20124 Number of successful extensions: 133 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 122 Number of HSP's gapped (non-prelim): 9 length of query: 622 length of database: 492,079 effective HSP length: 82 effective length of query: 540 effective length of database: 352,679 effective search space: 190446660 effective search space used: 190446660 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719219|ref|YP_003874751.1| transcriptional repressor [Spirochaeta thermophila DSM 6192] (355 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 366,792 Number of Sequences: 1700 Number of extensions: 17197 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61 Number of HSP's gapped (non-prelim): 0 length of query: 355 length of database: 492,079 effective HSP length: 78 effective length of query: 277 effective length of database: 359,479 effective search space: 99575683 effective search space used: 99575683 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719220|ref|YP_003874752.1| hypothetical protein STHERM_c15390 [Spirochaeta thermophila DSM 6192] (57 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.333 0.147 0.469 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,384 Number of Sequences: 1700 Number of extensions: 679 Number of successful extensions: 0 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 57 length of database: 492,079 effective HSP length: 29 effective length of query: 28 effective length of database: 442,779 effective search space: 12397812 effective search space used: 12397812 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719221|ref|YP_003874753.1| LVIVD repeat-containing protein [Spirochaeta thermophila DSM 6192] (637 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 693,768 Number of Sequences: 1700 Number of extensions: 33698 Number of successful extensions: 90 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90 Number of HSP's gapped (non-prelim): 0 length of query: 637 length of database: 492,079 effective HSP length: 83 effective length of query: 554 effective length of database: 350,979 effective search space: 194442366 effective search space used: 194442366 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719222|ref|YP_003874754.1| hypothetical protein STHERM_c15410 [Spirochaeta thermophila DSM 6192] (171 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 169,842 Number of Sequences: 1700 Number of extensions: 6947 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 171 length of database: 492,079 effective HSP length: 71 effective length of query: 100 effective length of database: 371,379 effective search space: 37137900 effective search space used: 37137900 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719223|ref|YP_003874755.1| transcriptional regulator [Spirochaeta thermophila DSM 6192] (218 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.134 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 188,462 Number of Sequences: 1700 Number of extensions: 7311 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 218 length of database: 492,079 effective HSP length: 73 effective length of query: 145 effective length of database: 367,979 effective search space: 53356955 effective search space used: 53356955 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719224|ref|YP_003874756.1| hypothetical protein STHERM_c15430 [Spirochaeta thermophila DSM 6192] (299 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.142 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 294,376 Number of Sequences: 1700 Number of extensions: 12401 Number of successful extensions: 82 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82 Number of HSP's gapped (non-prelim): 0 length of query: 299 length of database: 492,079 effective HSP length: 76 effective length of query: 223 effective length of database: 362,879 effective search space: 80922017 effective search space used: 80922017 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719225|ref|YP_003874757.1| phytoene dehydrogenase [Spirochaeta thermophila DSM 6192] (345 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.140 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 371,837 Number of Sequences: 1700 Number of extensions: 17248 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 0 length of query: 345 length of database: 492,079 effective HSP length: 78 effective length of query: 267 effective length of database: 359,479 effective search space: 95980893 effective search space used: 95980893 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719226|ref|YP_003874758.1| hypothetical protein STHERM_c15450 [Spirochaeta thermophila DSM 6192] (140 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 175,273 Number of Sequences: 1700 Number of extensions: 7798 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 0 length of query: 140 length of database: 492,079 effective HSP length: 68 effective length of query: 72 effective length of database: 376,479 effective search space: 27106488 effective search space used: 27106488 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719227|ref|YP_003874759.1| hypothetical protein STHERM_c15460 [Spirochaeta thermophila DSM 6192] (265 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 269,492 Number of Sequences: 1700 Number of extensions: 12488 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 265 length of database: 492,079 effective HSP length: 75 effective length of query: 190 effective length of database: 364,579 effective search space: 69270010 effective search space used: 69270010 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719228|ref|YP_003874760.1| hypothetical protein STHERM_c15470 [Spirochaeta thermophila DSM 6192] (135 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.332 0.141 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 117,720 Number of Sequences: 1700 Number of extensions: 4488 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 135 length of database: 492,079 effective HSP length: 68 effective length of query: 67 effective length of database: 376,479 effective search space: 25224093 effective search space used: 25224093 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719229|ref|YP_003874761.1| hypothetical protein STHERM_c15480 [Spirochaeta thermophila DSM 6192] (65 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.150 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,288 Number of Sequences: 1700 Number of extensions: 2518 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 65 length of database: 492,079 effective HSP length: 37 effective length of query: 28 effective length of database: 429,179 effective search space: 12017012 effective search space used: 12017012 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719230|ref|YP_003874762.1| hypothetical protein STHERM_c15490 [Spirochaeta thermophila DSM 6192] (181 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.334 0.146 0.472 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 153,203 Number of Sequences: 1700 Number of extensions: 5540 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 181 length of database: 492,079 effective HSP length: 71 effective length of query: 110 effective length of database: 371,379 effective search space: 40851690 effective search space used: 40851690 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719231|ref|YP_003874763.1| hypothetical protein STHERM_c15500 [Spirochaeta thermophila DSM 6192] (412 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 369,575 Number of Sequences: 1700 Number of extensions: 14627 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 412 length of database: 492,079 effective HSP length: 79 effective length of query: 333 effective length of database: 357,779 effective search space: 119140407 effective search space used: 119140407 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719232|ref|YP_003874764.1| hypothetical protein STHERM_c15510 [Spirochaeta thermophila DSM 6192] (1477 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,475,775 Number of Sequences: 1700 Number of extensions: 66235 Number of successful extensions: 185 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 185 Number of HSP's gapped (non-prelim): 0 length of query: 1477 length of database: 492,079 effective HSP length: 89 effective length of query: 1388 effective length of database: 340,779 effective search space: 473001252 effective search space used: 473001252 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 98 (42.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719233|ref|YP_003874765.1| hypothetical protein STHERM_c15520 [Spirochaeta thermophila DSM 6192] (96 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,438 Number of Sequences: 1700 Number of extensions: 3067 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 96 length of database: 492,079 effective HSP length: 63 effective length of query: 33 effective length of database: 384,979 effective search space: 12704307 effective search space used: 12704307 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719234|ref|YP_003874766.1| nucleotidyltransferase [Spirochaeta thermophila DSM 6192] (110 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 115,556 Number of Sequences: 1700 Number of extensions: 4573 Number of successful extensions: 7 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 110 length of database: 492,079 effective HSP length: 65 effective length of query: 45 effective length of database: 381,579 effective search space: 17171055 effective search space used: 17171055 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719235|ref|YP_003874767.1| hypothetical protein STHERM_c15540 [Spirochaeta thermophila DSM 6192] (195 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602102|ref|NP_148650.1| small neutral amino acid transporte... 48 2e-07 >gi|14602102|ref|NP_148650.1| small neutral amino acid transporter [Aeropyrum pernix K1] Length = 199 Score = 47.8 bits (112), Expect = 2e-07 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 1/117 (0%) Query: 5 ATMITLLLIMDPFGNIPAFLAVLKNYTSEQRRRIIIREMXXXXXXXXXXXXXXXXXXDAM 64 +++I L +++DP G P +++ +R RI+ + D + Sbjct: 9 SSIILLFIVLDPVGVSPYVASIVARRPEGERERIVRTALASAGAILVAFTLIGVAVLDIL 68 Query: 65 QIKKPALGIAGGVVLFFIAIRMIFPGTGSYTEEE-SEPLIVPLAVPFIAGPSAIAMI 120 + +A G++L A +F Y+E E I PLA P +AGP +IA + Sbjct: 69 GVSMDEFKVAAGLLLLIYATADLFEIKIGYSEPSGDEVAIFPLATPLLAGPGSIATV 125 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.143 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 143,721 Number of Sequences: 1700 Number of extensions: 4791 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 1 length of query: 195 length of database: 492,079 effective HSP length: 72 effective length of query: 123 effective length of database: 369,679 effective search space: 45470517 effective search space used: 45470517 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719236|ref|YP_003874768.1| nucleotidyltransferase domain-containing protein [Spirochaeta thermophila DSM 6192] (93 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431389|ref|NP_147835.2| hypothetical protein APE_1270.1 [A... 38 5e-05 >gi|118431389|ref|NP_147835.2| hypothetical protein APE_1270.1 [Aeropyrum pernix K1] Length = 149 Score = 37.7 bits (86), Expect = 5e-05 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Query: 6 RASLPLLREALPVLSVVLFGSYAKGTNTAFSDIDLLVV---YQDPPRQDAYTLVKRSIPL 62 ++S L E L ++V+LFGSYA+G +SDID++VV ++ D Y +V ++ Sbjct: 19 KSSASKLLERLGDVTVILFGSYARGDFNRWSDIDIIVVSPRFRGVRILDRYDMVSGAVE- 77 Query: 63 RGLEPHVYARSEYEQ 77 G+E + E+ + Sbjct: 78 EGVEAILMTPEEFRE 92 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,833 Number of Sequences: 1700 Number of extensions: 4044 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 1 length of query: 93 length of database: 492,079 effective HSP length: 61 effective length of query: 32 effective length of database: 388,379 effective search space: 12428128 effective search space used: 12428128 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719237|ref|YP_003874769.1| hypothetical protein STHERM_c15560 [Spirochaeta thermophila DSM 6192] (131 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431390|ref|NP_147836.2| hypothetical protein APE_1272.1 [A... 90 2e-20 gi|118431183|ref|NP_147472.2| hypothetical protein APE_0760.1 [A... 60 2e-11 >gi|118431390|ref|NP_147836.2| hypothetical protein APE_1272.1 [Aeropyrum pernix K1] Length = 139 Score = 89.7 bits (221), Expect = 2e-20 Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 4/128 (3%) Query: 2 ERSQDWIDAAEGDLEHARHDLEKGFYNWACFSSQQAAEKAVKAVFQKIGAEAWGHSVFDL 61 E + W+ A+ LE R D E GFY+WACF + QAAE ++KAV + G E++GH + L Sbjct: 6 EEAVRWLRQAKHTLESIRVDYEGGFYSWACFKANQAAEYSIKAVLRAAGLESFGHDLMAL 65 Query: 62 LEELSGSYEVPERLIEMALELDKAYIPTRYPDALPSG-SPRTRYSRLEAERMITYAQEIF 120 + + + E L+K Y+P RYPDA P G +P Y+R +AE + A ++ Sbjct: 66 WRRARSLCQPLQEMEECIAVLNKLYLPPRYPDAWPGGAAPFENYTRRDAEEALECASRVY 125 Query: 121 ---EYCKG 125 E C G Sbjct: 126 RAVEECLG 133 >gi|118431183|ref|NP_147472.2| hypothetical protein APE_0760.1 [Aeropyrum pernix K1] Length = 135 Score = 60.1 bits (144), Expect = 2e-11 Identities = 45/121 (37%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 ERSQDWIDAAEGDLEHARHDLEKGFYNWACFSSQQAAEKAVKAVFQKI-GAEAWGHSVFD 60 E++ W+ AA DL A + L+ G A F SQQAAEKA+K + G HS+ Sbjct: 3 EKAWLWLRAARRDLGRAEYSLKVGDRAAATFWSQQAAEKALKGLLLAFKGDYPKTHSIRR 62 Query: 61 LLEELSGSYEVPERLIEMALELDKAYIPTRYPDALPSGSPRTRYSRLEAERMITYAQEIF 120 LLE+L + E +E A EL + Y +RYPD + P R AER + A+ I Sbjct: 63 LLEDLGLDLGLSEGELEDAFELTQYYYLSRYPDVVEE-LPDEVIGRRSAERAVNAARRIV 121 Query: 121 E 121 E Sbjct: 122 E 122 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.132 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 132,987 Number of Sequences: 1700 Number of extensions: 5488 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 2 length of query: 131 length of database: 492,079 effective HSP length: 68 effective length of query: 63 effective length of database: 376,479 effective search space: 23718177 effective search space used: 23718177 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719238|ref|YP_003874770.1| iron-sulfur cluster-binding protein [Spirochaeta thermophila DSM 6192] (371 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431451|ref|NP_147932.2| NADH dehydrogenase subunit I [Aero... 42 3e-05 >gi|118431451|ref|NP_147932.2| NADH dehydrogenase subunit I [Aeropyrum pernix K1] Length = 186 Score = 41.6 bits (96), Expect = 3e-05 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 16/61 (26%) Query: 310 RCRRCGYCARVCPVSCITM----------------DGLPVWDYSRCIYCYCCHENCPHEA 353 +C C CAR+CP + + M PV +Y RCI+C C + CP EA Sbjct: 65 KCISCAACARICPSAAMKMIRVPVPHPKEPEKKVTKQFPVINYQRCIFCGYCVDICPTEA 124 Query: 354 I 354 + Sbjct: 125 L 125 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.139 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 346,257 Number of Sequences: 1700 Number of extensions: 13999 Number of successful extensions: 86 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 83 Number of HSP's gapped (non-prelim): 3 length of query: 371 length of database: 492,079 effective HSP length: 78 effective length of query: 293 effective length of database: 359,479 effective search space: 105327347 effective search space used: 105327347 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719239|ref|YP_003874771.1| hypothetical protein STHERM_c15580 [Spirochaeta thermophila DSM 6192] (291 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 262,510 Number of Sequences: 1700 Number of extensions: 10441 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 291 length of database: 492,079 effective HSP length: 76 effective length of query: 215 effective length of database: 362,879 effective search space: 78018985 effective search space used: 78018985 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719240|ref|YP_003874772.1| class V aminotransferase [Spirochaeta thermophila DSM 6192] (619 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602053|ref|NP_148599.1| aspartate aminotransferase [Aeropyr... 90 2e-19 gi|14601973|ref|NP_148518.1| sugar-phosphate nucleotidyl transfe... 45 7e-06 gi|14601231|ref|NP_147764.1| glucose-1-phosphate thymidylyltrans... 41 1e-04 >gi|14602053|ref|NP_148599.1| aspartate aminotransferase [Aeropyrum pernix K1] Length = 382 Score = 89.7 bits (221), Expect = 2e-19 Identities = 88/372 (23%), Positives = 155/372 (41%), Gaps = 16/372 (4%) Query: 252 VLLNPGPATTTDSVKYAQVVPDICPREKEFGDLMDQIRRDLTSFVADWSHYTTVLF--GG 309 +L+ PGP V A P I +F D+I + S + + +F G Sbjct: 4 LLMIPGPTPVDPEVLLAMARPVISHTSPDF----DEIHGETVSMLQKLFRTSGKVFLLPG 59 Query: 310 SGTAADEAMICSVVPEDGRLLVIDNGVYGERMARMASVYKLNYEVFESSP-TGPVDLDVM 368 SG+ E + SV R LV+ G +G R+ + V ES G DV Sbjct: 60 SGSLGMEFAVRSVAGRGSRALVLKAGYFGGYFERILRSLGASVTVVESPVGRGFTGADVE 119 Query: 369 EHTLKKGKFTHLAVVYHETTTGLLTDLPSIGEICKRLGIVTLVDAVSAYAGIPMDLEKLN 428 E + G + V + ET+T + + I + K+ G +VD +++ G+ + L++ Sbjct: 120 EALDRAGDVDVVFVQHVETSTSVANPVREIAGVVKKNGARLVVDGIASVGGMDLRLDEWG 179 Query: 429 VHFMAASSNKNLQGMAGVAFVICNRE-SLEATRSIPMRSY--YLNLYDQHVFFEKTKQTR 485 V S K L G+A V + E S+E + P Y +L+L + E T+ Sbjct: 180 VDVALTGSQKALSTPPGLAIVAFSSEYSVELEKREPSGIYFDFLSLSRE---MESTRNYH 236 Query: 486 FTPPVQTLYALRQAILETKVETVEARYARYTACWEILMDGIARLGLEALVPREYQSHLIT 545 TP V ++AL ++ E +E R+ R+ + LGL + +++ +T Sbjct: 237 ITPAVNLVFALNASLKRILGEGLENRFERHRVLARAFTRAMEALGLRLVAEEPFRAWTVT 296 Query: 546 AIVEPSRPGYSFEDLHAYARKRGFTIYPGKLS-NAQTFRIANIGDIQPEEMQRFVEILGE 604 A+ P G + ++ RKRG + G + FR+ ++G++ ++ + + Sbjct: 297 AVYLPQ--GIDWSRFYSVMRKRGVEVAGGLGGLKGKIFRVGHMGEVDANDLIATIAAIER 354 Query: 605 YLLSLDESEENL 616 L+ L E L Sbjct: 355 SLVELGYREARL 366 >gi|14601973|ref|NP_148518.1| sugar-phosphate nucleotidyl transferase [Aeropyrum pernix K1] Length = 239 Score = 44.7 bits (104), Expect = 7e-06 Identities = 60/240 (25%), Positives = 95/240 (39%), Gaps = 24/240 (10%) Query: 5 AVILGAGLGSRLKERTASMPKGFLVVGGMPIVEHSVRNLIEAGVERIIIGTGYCAEYY-- 62 A+IL G G RL+ T PK L V G P++ H + L GVE ++ GY E Sbjct: 3 ALILAGGYGKRLRPLTEHKPKPLLEVAGKPVLVHQIEWLRYYGVEEFVLLVGYLKERIIE 62 Query: 63 -EALARKYPVIET--LRNPHYATTGSMRTLYELRELVSSDFFLL--ESDLV--YDPAGLF 115 K+ V T + + T G+ L+ R ++ + +L D+V DP L Sbjct: 63 EMGSGAKFGVKITYVVEDKPLGTAGA---LWNARHIIEKENLVLVVNGDIVTNIDPDPLV 119 Query: 116 VLANDPRENVVLVSGKTNSGDEVYVEVDERGCLRNLSKDLADVSSVYGELVGITKLSPHA 175 L + RE V ++ +E+D+ K + G L ++K Sbjct: 120 RLVRE-REAVAGIAAVPLRSPYGILELDDGNVTGFREKPFIYDYWINGGLYAVSKEIVKY 178 Query: 176 LAKMCEYAEGVFADQPLLDYERALVAVSTNGVPIGVRKIEHYLWREIDNEQHLSMAVKDI 235 L + + + F P L + LVA +I + WR ID + + A K+I Sbjct: 179 LPQQGDIEKTTF---PQLASDGKLVAAR--------YEIPPFYWRSIDTFKDIEEASKEI 227 >gi|14601231|ref|NP_147764.1| glucose-1-phosphate thymidylyltransferase [Aeropyrum pernix K1] Length = 355 Score = 40.8 bits (94), Expect = 1e-04 Identities = 20/54 (37%), Positives = 33/54 (61%) Query: 4 EAVILGAGLGSRLKERTASMPKGFLVVGGMPIVEHSVRNLIEAGVERIIIGTGY 57 + +IL AG GSRL+ T S PK + + G PI+++++ +L+ V I + GY Sbjct: 3 KGLILAAGEGSRLRPFTFSRPKHLIPLLGKPIIQYAIDDLVSINVRDIGVVVGY 56 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 640,945 Number of Sequences: 1700 Number of extensions: 29790 Number of successful extensions: 103 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 99 Number of HSP's gapped (non-prelim): 4 length of query: 619 length of database: 492,079 effective HSP length: 82 effective length of query: 537 effective length of database: 352,679 effective search space: 189388623 effective search space used: 189388623 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719241|ref|YP_003874773.1| phosphonopyruvate decarboxylase [Spirochaeta thermophila DSM 6192] (370 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 367,822 Number of Sequences: 1700 Number of extensions: 16525 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 0 length of query: 370 length of database: 492,079 effective HSP length: 78 effective length of query: 292 effective length of database: 359,479 effective search space: 104967868 effective search space used: 104967868 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719242|ref|YP_003874774.1| hypothetical protein STHERM_c15610 [Spirochaeta thermophila DSM 6192] (531 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430941|ref|NP_147059.2| carboxyvinyl-carboxyphosphonate ph... 114 8e-27 gi|14601973|ref|NP_148518.1| sugar-phosphate nucleotidyl transfe... 47 1e-06 gi|14601231|ref|NP_147764.1| glucose-1-phosphate thymidylyltrans... 47 2e-06 gi|118430955|ref|NP_147084.2| sugar-phosphate nucleotidyl transf... 41 8e-05 >gi|118430941|ref|NP_147059.2| carboxyvinyl-carboxyphosphonate phosphorylmutase [Aeropyrum pernix K1] Length = 308 Score = 114 bits (284), Expect = 8e-27 Identities = 82/280 (29%), Positives = 143/280 (51%), Gaps = 15/280 (5%) Query: 7 LKRLLLSDDVEFLMEAHNGISAKIVEEAGFKGIWASGLTISASLGVRDNNEASWTQVLEV 66 L+ L+ D+ +N A + E GF+ ++ SG I+ SL + D + +++ Sbjct: 16 LRELIEKRDIVVAPGVYNPAVALLAERMGFEALYLSGAAITGSLAMPDLGLITLSELAMF 75 Query: 67 VEFMSDATNIPILLDGDTGYGNFNNARRLVRKLEQRGVAGVCIEDKLFPKTNSFISGETQ 126 +++ +P+++D DTG+G N R VR+LE+ G A + IED++ PK + G+ Sbjct: 76 TSYITRVVRVPVIVDADTGFGEAINVERTVRELERAGAAAIQIEDQVMPKKCGHLQGKA- 134 Query: 127 PLANTEEFCGKIKAMKDIQEDPDFVVVARVEAFIAGWGLEEALRRAEAYRQAGADAVLIH 186 L + E+ KI A + D ++VAR +A G E+A+ RA+ Y +AGAD + Sbjct: 135 -LISPEDMVKKIIAAVGARRDA--LIVARTDA-RGVEGFEKAVERAQLYVEAGADIIFPE 190 Query: 187 SKRSDFREIEAFMREWGNRL--PVVIVPTKYYSTP---TDVFRSAGVRLVIWANHNLRAA 241 + S +E F RE+ R+ P++ T++ TP D FR AG ++VI+ RA+ Sbjct: 191 ALTS----LEEF-REFARRVKAPLLANMTEFGKTPYITVDQFREAGYKIVIFPVTTFRAS 245 Query: 242 ISAMQHVSAAIFKSETLMVVEDQIAPLSEVFRLQGASELE 281 + A + V I + T + D++ +E + L G + E Sbjct: 246 LKASETVLREIMEKGTQKDILDKLYTRTEFYDLIGYHDYE 285 >gi|14601973|ref|NP_148518.1| sugar-phosphate nucleotidyl transferase [Aeropyrum pernix K1] Length = 239 Score = 47.0 bits (110), Expect = 1e-06 Identities = 24/58 (41%), Positives = 37/58 (63%) Query: 297 AVILAAAQGEKLGDLTSTTPKAMLKVHGKPILGLIVEKLNRVGVKDITVVRGFAKEKI 354 A+ILA G++L LT PK +L+V GKP+L +E L GV++ ++ G+ KE+I Sbjct: 3 ALILAGGYGKRLRPLTEHKPKPLLEVAGKPVLVHQIEWLRYYGVEEFVLLVGYLKERI 60 >gi|14601231|ref|NP_147764.1| glucose-1-phosphate thymidylyltransferase [Aeropyrum pernix K1] Length = 355 Score = 46.6 bits (109), Expect = 2e-06 Identities = 23/61 (37%), Positives = 38/61 (62%) Query: 295 VNAVILAAAQGEKLGDLTSTTPKAMLKVHGKPILGLIVEKLNRVGVKDITVVRGFAKEKI 354 V +ILAA +G +L T + PK ++ + GKPI+ ++ L + V+DI VV G+ +KI Sbjct: 2 VKGLILAAGEGSRLRPFTFSRPKHLIPLLGKPIIQYAIDDLVSINVRDIGVVVGYFGDKI 61 Query: 355 Q 355 + Sbjct: 62 K 62 >gi|118430955|ref|NP_147084.2| sugar-phosphate nucleotidyl transferase [Aeropyrum pernix K1] Length = 250 Score = 40.8 bits (94), Expect = 8e-05 Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 13/112 (11%) Query: 297 AVILAAAQGEKLGDLTSTTPKAMLKV--HGKPILGLIVEKLNRVGVKDITVVRGF----- 349 A+ILA +G + T PK M+ + KP+L +V+ L GV++I ++ G+ Sbjct: 7 ALILAGGKGRRFRPYTDLIPKPMIPLGRSEKPLLEYVVKMLALQGVENIVLLVGYKWRYI 66 Query: 350 -----AKEKIQMPNTTTVDNDRYAETSEVYSLYLARDRIK-ENTVISFGDIV 395 EK+ + ++D++RY+ T L R+ E+ ++ +GDI+ Sbjct: 67 YNYFGRGEKLGVKIDYSIDDERYSGTGGSVLKALEEGRVSDEDFLVWYGDII 118 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 495,038 Number of Sequences: 1700 Number of extensions: 20612 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 4 length of query: 531 length of database: 492,079 effective HSP length: 81 effective length of query: 450 effective length of database: 354,379 effective search space: 159470550 effective search space used: 159470550 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719243|ref|YP_003874775.1| transporter [Spirochaeta thermophila DSM 6192] (368 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.143 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 285,377 Number of Sequences: 1700 Number of extensions: 10343 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 368 length of database: 492,079 effective HSP length: 78 effective length of query: 290 effective length of database: 359,479 effective search space: 104248910 effective search space used: 104248910 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719244|ref|YP_003874776.1| glycosyltransferase [Spirochaeta thermophila DSM 6192] (295 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 300,274 Number of Sequences: 1700 Number of extensions: 13224 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 295 length of database: 492,079 effective HSP length: 76 effective length of query: 219 effective length of database: 362,879 effective search space: 79470501 effective search space used: 79470501 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719245|ref|YP_003874777.1| glycosyl transferase, group 2 [Spirochaeta thermophila DSM 6192] (321 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.141 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 332,300 Number of Sequences: 1700 Number of extensions: 14490 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 321 length of database: 492,079 effective HSP length: 77 effective length of query: 244 effective length of database: 361,179 effective search space: 88127676 effective search space used: 88127676 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719246|ref|YP_003874778.1| hypothetical protein STHERM_c15650 [Spirochaeta thermophila DSM 6192] (366 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.134 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 320,075 Number of Sequences: 1700 Number of extensions: 12921 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 0 length of query: 366 length of database: 492,079 effective HSP length: 78 effective length of query: 288 effective length of database: 359,479 effective search space: 103529952 effective search space used: 103529952 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719247|ref|YP_003874779.1| hypothetical protein STHERM_c15660 [Spirochaeta thermophila DSM 6192] (418 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601239|ref|NP_147773.1| glycosyl transferase, group 1 [Aero... 90 9e-20 gi|118431714|ref|NP_148357.2| glycosyl transferase, group 1 [Aer... 79 3e-16 >gi|14601239|ref|NP_147773.1| glycosyl transferase, group 1 [Aeropyrum pernix K1] Length = 363 Score = 90.1 bits (222), Expect = 9e-20 Identities = 77/284 (27%), Positives = 135/284 (47%), Gaps = 28/284 (9%) Query: 126 DILHLPSFIGPSIPSLPIPMVIT-VH-DLIPLFLPSGEDPLFRNFLIRKLGELHPEVWIH 183 DI H + P + P+ I VH D++ + LP PL +++ + + +++ Sbjct: 88 DIAHAVPWYSPLVTKTPVVAQIHHVHQDVVYIELPK---PLA--WIVSRAEKTIAKIYRR 142 Query: 184 --CISEATKKDLLTYAPHLDPGHVFVVPNGISSRFFRETETSAIEKTLAYYGLEPGTPYI 241 +S++TKK+L +DP + VVPNG+ +R G + P I Sbjct: 143 FIAVSQSTKKELAKRLG-IDPDRIAVVPNGVDLEKYRP-------------GSKDPRPTI 188 Query: 242 VSLSTLQERKNLLTALRAFAAAKKEIPELRYVLIGYTPREEREKILTVLNELSIASHVII 301 + ++ KNL L+A+ K+EIP+ + ++IG +E++ + L E V Sbjct: 189 LWAGRIKMYKNLDHLLKAYRIVKQEIPDAQLIIIGTGDQEQKMRELAKKLE---PRDVHF 245 Query: 302 TGFLPDDRVRALYSAAKAFVFPSLYEGFGLPPLEAMACGLPVICSNTSSLPEVVG--DAG 359 G + + A V S+ EG+G+ EA AC +P I N L + V + G Sbjct: 246 LGKMSEQEKIMWMQRAWIIVSTSMIEGWGITITEAAACKIPAIAYNVPGLRDSVKHMETG 305 Query: 360 ILLDPYDIHGFSEAICRIVTDSELRQRLSQKGLERSASFTWRHT 403 IL++P +I ++AI ++TD+ LR +LS+ + SF+W +T Sbjct: 306 ILVEPGNIEQLAKAIAWLLTDNSLRNKLSENAYNYAQSFSWDNT 349 >gi|118431714|ref|NP_148357.2| glycosyl transferase, group 1 [Aeropyrum pernix K1] Length = 385 Score = 78.6 bits (192), Expect = 3e-16 Identities = 63/239 (26%), Positives = 113/239 (47%), Gaps = 24/239 (10%) Query: 185 ISEATKKDLLTYAPHLDPGHVFVVPNGISSRFFRETETSAIEKTLAYYGLEPGTPYIVSL 244 IS +T D + D +++PNG+ F+ + A P ++ L Sbjct: 161 ISVSTAADKMVEGIVGDSVDRYIIPNGVDVERFKPSTPKA------------DYPLVLFL 208 Query: 245 STLQERKNLLTALRAFAAAKKEIPELRYVLIGYTPREEREKILTVLNELSIASHVIITGF 304 L RK +RAF EI + + + G E K+L + + ++V + G Sbjct: 209 GRLVWRKGAHVLVRAFRHVVDEIRDAKLYIGGKGEFEPIIKLL--IARYGLENNVKMLGV 266 Query: 305 LPDDRVRALYSAAKAFVFPSLY-EGFGLPPLEAMACGLPVICSNTSSLPEVV--GDAGIL 361 +P+ +LYS+A PS+ E FG+ LE+++ G PV+ S L +VV G G+L Sbjct: 267 VPESEKPSLYSSAWVTAVPSIVNESFGIVALESLSSGTPVVASRQGGLKDVVKHGKTGLL 326 Query: 362 LDPYDIHGFSEAICRIVTDSELRQRLSQKG----LERSASFTWRHTTDKLVEMYKYILE 416 + P ++A+ ++ DS LR+R+S++ LER + WR +++++Y + +E Sbjct: 327 VKPGSSKELAKALITLLQDSGLRKRMSEEARKIVLER---YDWRKVVPQILKVYGHYME 382 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 432,414 Number of Sequences: 1700 Number of extensions: 19693 Number of successful extensions: 76 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 71 Number of HSP's gapped (non-prelim): 2 length of query: 418 length of database: 492,079 effective HSP length: 79 effective length of query: 339 effective length of database: 357,779 effective search space: 121287081 effective search space used: 121287081 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719248|ref|YP_003874780.1| hypothetical protein STHERM_c15670 [Spirochaeta thermophila DSM 6192] (379 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601239|ref|NP_147773.1| glycosyl transferase, group 1 [Aero... 85 3e-18 gi|118431714|ref|NP_148357.2| glycosyl transferase, group 1 [Aer... 68 4e-13 >gi|14601239|ref|NP_147773.1| glycosyl transferase, group 1 [Aeropyrum pernix K1] Length = 363 Score = 85.1 bits (209), Expect = 3e-18 Identities = 81/296 (27%), Positives = 131/296 (44%), Gaps = 31/296 (10%) Query: 88 DVYHCLNSNYPLGFHYPRGVVTIH----DLKYLKYPRFMGNAWWLKTRYLELVFKSAAKR 143 D+ H + PL P V IH D+ Y++ P+ + W+ +R K+ AK Sbjct: 88 DIAHAVPWYSPLVTKTPV-VAQIHHVHQDVVYIELPKPLA---WIVSR----AEKTIAKI 139 Query: 144 CAKVIAVSHATKRDIVDLFSIPDPDRIVVIHEAGGL--FSASSNVPEQGDRILETYGVKR 201 + IAVS +TK+++ I DPDRI V+ L + S P R Sbjct: 140 YRRFIAVSQSTKKELAKRLGI-DPDRIAVVPNGVDLEKYRPGSKDP-------------R 185 Query: 202 PYFLFLGEHRPHKNIEGVIEAFERFRQMCRDPFHLVITGKVHPSYRARMTRLKWGRDDVV 261 P L+ G + +KN++ +++A+ +Q D L+I G + R K DV Sbjct: 186 PTILWAGRIKMYKNLDHLLKAYRIVKQEIPDA-QLIIIGTGDQEQKMRELAKKLEPRDVH 244 Query: 262 FTGFIPDEHLPVLYRHAYGFLLPSFYEGFGIPILEAMEAGVPVITSNVSSMPEVGG--DA 319 F G + ++ + + A+ + S EG+GI I EA +P I NV + + + Sbjct: 245 FLGKMSEQEKIMWMQRAWIIVSTSMIEGWGITITEAAACKIPAIAYNVPGLRDSVKHMET 304 Query: 320 CLTVSPYDPEDIARKMYVLATDAGLHALLREKGYARAKEFSWEKAARETLKVYEQV 375 + V P + E +A+ + L TD L L E Y A+ FSW+ A L + E + Sbjct: 305 GILVEPGNIEQLAKAIAWLLTDNSLRNKLSENAYNYAQSFSWDNTAITFLNILEDI 360 >gi|118431714|ref|NP_148357.2| glycosyl transferase, group 1 [Aeropyrum pernix K1] Length = 385 Score = 67.8 bits (164), Expect = 4e-13 Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 6/176 (3%) Query: 202 PYFLFLGEHRPHKNIEGVIEAFERFRQMCRDPFHLVITGKVHPSYRARMTRLKWG-RDDV 260 P LFLG K ++ AF RD L I GK ++ ++G ++V Sbjct: 203 PLVLFLGRLVWRKGAHVLVRAFRHVVDEIRDA-KLYIGGKGEFEPIIKLLIARYGLENNV 261 Query: 261 VFTGFIPDEHLPVLYRHAYGFLLPSFY-EGFGIPILEAMEAGVPVITSNVSSMPEV--GG 317 G +P+ P LY A+ +PS E FGI LE++ +G PV+ S + +V G Sbjct: 262 KMLGVVPESEKPSLYSSAWVTAVPSIVNESFGIVALESLSSGTPVVASRQGGLKDVVKHG 321 Query: 318 DACLTVSPYDPEDIARKMYVLATDAGLHALLREKGYARAKE-FSWEKAARETLKVY 372 L V P +++A+ + L D+GL + E+ E + W K + LKVY Sbjct: 322 KTGLLVKPGSSKELAKALITLLQDSGLRKRMSEEARKIVLERYDWRKVVPQILKVY 377 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.140 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 416,084 Number of Sequences: 1700 Number of extensions: 20053 Number of successful extensions: 66 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 61 Number of HSP's gapped (non-prelim): 2 length of query: 379 length of database: 492,079 effective HSP length: 78 effective length of query: 301 effective length of database: 359,479 effective search space: 108203179 effective search space used: 108203179 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719249|ref|YP_003874781.1| group 1 glycosyl transferase [Spirochaeta thermophila DSM 6192] (370 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431714|ref|NP_148357.2| glycosyl transferase, group 1 [Aer... 76 1e-15 >gi|118431714|ref|NP_148357.2| glycosyl transferase, group 1 [Aeropyrum pernix K1] Length = 385 Score = 76.3 bits (186), Expect = 1e-15 Identities = 98/372 (26%), Positives = 158/372 (42%), Gaps = 36/372 (9%) Query: 14 GGVQVHVRDLCRALMALGHRCTVLMG--GRGIFLDELAECGIPYVVIPSLKRSISPFKDL 71 GGVQ HVRDL R L G+ ++ G+G D AE Y+V P L Sbjct: 27 GGVQSHVRDLTRLLQDFGYDVVIVSRALGKGDVKDLEAEG--HYIV--------KPLFPL 76 Query: 72 EAVL------KIRKVLKDLRPDLVSTH--TSKAGVLGRLAARSLGIPVVFTAHGWAFTEG 123 E + +R+ ++ L+PD+V +H + +L AAR LG+P + T H Sbjct: 77 EIIFVPPDPSDLRREIESLKPDVVHSHHIYTLTSLLALKAARDLGLPRIATNHSIFLAYD 136 Query: 124 VPAASRWIYRLL-ERIVAPCARKIITVSEFDREIALKGKVGRSSQLIAIHNGMPDVSVEH 182 A R +L R + P A+ +I+VS ++ ++G VG S I NG+ DV Sbjct: 137 KVALWRIASIVLPTRYLLPNAQAVISVSTAADKM-VEGIVGDSVDRYIIPNGV-DVERFK 194 Query: 183 HAKPELQPPRMVMLARFEPQKDHKTLFLA----LSKLRHMEWHMECVGDGPLLEETKKLA 238 + P+ P ++ L R +K L A + ++R + ++ G G K L Sbjct: 195 PSTPKADYPLVLFLGRLVWRKGAHVLVRAFRHVVDEIRDAKLYIG--GKGEFEPIIKLLI 252 Query: 239 YRLGLEERISFPGFRGDIEAVLAQSQIYV-----LISHWEGLPRSILEAMRAGLPVVASR 293 R GLE + G + E S +V +++ G+ LE++ +G PVVASR Sbjct: 253 ARYGLENNVKMLGVVPESEKPSLYSSAWVTAVPSIVNESFGI--VALESLSSGTPVVASR 310 Query: 294 XXXXXXXXXXXXXXYVVDRRDVDALAQRLERLIADPRLRASMGRAGRARYETHFTFERML 353 +V LA+ L L+ D LR M R + + +++ Sbjct: 311 QGGLKDVVKHGKTGLLVKPGSSKELAKALITLLQDSGLRKRMSEEARKIVLERYDWRKVV 370 Query: 354 KETLELYQQVLE 365 + L++Y +E Sbjct: 371 PQILKVYGHYME 382 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 371,692 Number of Sequences: 1700 Number of extensions: 16406 Number of successful extensions: 84 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 81 Number of HSP's gapped (non-prelim): 1 length of query: 370 length of database: 492,079 effective HSP length: 78 effective length of query: 292 effective length of database: 359,479 effective search space: 104967868 effective search space used: 104967868 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719250|ref|YP_003874782.1| hypothetical protein STHERM_c15690 [Spirochaeta thermophila DSM 6192] (445 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.332 0.145 0.495 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 449,390 Number of Sequences: 1700 Number of extensions: 19130 Number of successful extensions: 64 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 0 length of query: 445 length of database: 492,079 effective HSP length: 80 effective length of query: 365 effective length of database: 356,079 effective search space: 129968835 effective search space used: 129968835 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719251|ref|YP_003874783.1| glycosyl transferase, group 1 family [Spirochaeta thermophila DSM 6192] (242 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601239|ref|NP_147773.1| glycosyl transferase, group 1 [Aero... 72 1e-14 gi|118431714|ref|NP_148357.2| glycosyl transferase, group 1 [Aer... 65 2e-12 >gi|14601239|ref|NP_147773.1| glycosyl transferase, group 1 [Aeropyrum pernix K1] Length = 363 Score = 72.4 bits (176), Expect = 1e-14 Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 10/234 (4%) Query: 9 ERIASLFARKIITVSEYDRTLALQQRVADSKKIVTIHNGIPVGNASSGRRIWKNP-PGLV 67 E+ + R+ I VS+ + ++ D +I + NG+ + G K+P P ++ Sbjct: 133 EKTIAKIYRRFIAVSQSTKKELAKRLGIDPDRIAVVPNGVDLEKYRPGS---KDPRPTIL 189 Query: 68 MVARFEYQKDHPTLFKALSLLRDL--EWSLVCVGDGPLLESMKEEAKALGIGDRVEFLGF 125 R + K+ L KA +++ + L+ +G G + M+E AK L D V FLG Sbjct: 190 WAGRIKMYKNLDHLLKAYRIVKQEIPDAQLIIIGTGDQEQKMRELAKKLEPRD-VHFLGK 248 Query: 126 CEDVEGVLASSQ--IFVLASRWEGFPISILEAMRAGLPVVASDVGGCREAVVEGETGYLV 183 + E ++ + I V S EG+ I+I EA +P +A +V G R++V ETG LV Sbjct: 249 MSEQEKIMWMQRAWIIVSTSMIEGWGITITEAAACKIPAIAYNVPGLRDSVKHMETGILV 308 Query: 184 PRGDHMVLAERLRELILDPGKRERMGRAGRERFLAHFTFDHMMELLLDLYKELT 237 G+ LA+ + L+ D R ++ + F++D+ L++ +++T Sbjct: 309 EPGNIEQLAKAIAWLLTDNSLRNKLSE-NAYNYAQSFSWDNTAITFLNILEDIT 361 >gi|118431714|ref|NP_148357.2| glycosyl transferase, group 1 [Aeropyrum pernix K1] Length = 385 Score = 65.1 bits (157), Expect = 2e-12 Identities = 56/188 (29%), Positives = 85/188 (45%), Gaps = 15/188 (7%) Query: 56 GRRIWKNPPGLVMVARFEYQKDHPTLFKALSLLRDLEWSLVCVGDGPLLESMKEEAKALG 115 GR +W+ V+V F + D +RD + L G G +K G Sbjct: 209 GRLVWRKGAH-VLVRAFRHVVDE---------IRDAK--LYIGGKGEFEPIIKLLIARYG 256 Query: 116 IGDRVEFLGFCEDVEGVLASSQIFVLASRW---EGFPISILEAMRAGLPVVASDVGGCRE 172 + + V+ LG + E S +V A E F I LE++ +G PVVAS GG ++ Sbjct: 257 LENNVKMLGVVPESEKPSLYSSAWVTAVPSIVNESFGIVALESLSSGTPVVASRQGGLKD 316 Query: 173 AVVEGETGYLVPRGDHMVLAERLRELILDPGKRERMGRAGRERFLAHFTFDHMMELLLDL 232 V G+TG LV G LA+ L L+ D G R+RM R+ L + + ++ +L + Sbjct: 317 VVKHGKTGLLVKPGSSKELAKALITLLQDSGLRKRMSEEARKIVLERYDWRKVVPQILKV 376 Query: 233 YKELTESR 240 Y E+R Sbjct: 377 YGHYMEAR 384 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 257,387 Number of Sequences: 1700 Number of extensions: 11888 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 2 length of query: 242 length of database: 492,079 effective HSP length: 74 effective length of query: 168 effective length of database: 366,279 effective search space: 61534872 effective search space used: 61534872 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719252|ref|YP_003874784.1| hypothetical protein STHERM_c15710 [Spirochaeta thermophila DSM 6192] (352 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602202|ref|NP_147771.1| glycosyl transferase [Aeropyrum per... 70 1e-13 gi|118431038|ref|NP_147219.2| dolichol-phosphate mannosyltransfe... 41 4e-05 >gi|14602202|ref|NP_147771.1| glycosyl transferase [Aeropyrum pernix K1] Length = 283 Score = 69.7 bits (169), Expect = 1e-13 Identities = 43/137 (31%), Positives = 77/137 (56%), Gaps = 5/137 (3%) Query: 94 PLVTVITVSYNAERHLRDAIESVLSQTYPNVEYIVIDGGSTDGTLRILEEYSPSLDYWVS 153 PLV+++ +YN+E+ L +ES+ QTY N+E I++D STDGT++I E+Y+ V Sbjct: 17 PLVSIVIPTYNSEKTLSLTLESIKRQTYKNIEVIIVDNYSTDGTVKIAEKYNAR----VI 72 Query: 154 EPDEGIYHAFNKGLLLARGEIIGILNADDEYFPHAVEESVGAILSSGVDYSIGEVIHMDQ 213 + G+ A G L A+GE+ +L++D A+E V ++ G D I E Sbjct: 73 QTSGGLLWARYLGHLHAKGEVELLLDSDQILEHTAIERGV-KMVRRGYDALILEETSYKP 131 Query: 214 KILMKPIFPLSSKRIYQ 230 + L++ +F + + +++ Sbjct: 132 RTLVQWLFYIDRRHVFR 148 >gi|118431038|ref|NP_147219.2| dolichol-phosphate mannosyltransferase [Aeropyrum pernix K1] Length = 361 Score = 41.2 bits (95), Expect = 4e-05 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 7/119 (5%) Query: 94 PLVTVITVSYNAERHLRDAI----ESVLSQTYPNVEYIVIDGGSTDGTLRILEEYS---P 146 P V+VI + N ++R +S+ E + +D STDGT+ +E S P Sbjct: 9 PEVSVIVPTLNERDNIRPLYVGLKKSLEGAGLECFEIVFVDDSSTDGTIEEVERLSRSDP 68 Query: 147 SLDYWVSEPDEGIYHAFNKGLLLARGEIIGILNADDEYFPHAVEESVGAILSSGVDYSI 205 + V ++G+ A +GL ARG + +++AD ++ P V V + D ++ Sbjct: 69 RVRLIVRRGEKGLSRAVLEGLRRARGRVAVVMDADLQHPPETVPLLVEKVAGGEADLAV 127 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 381,695 Number of Sequences: 1700 Number of extensions: 18949 Number of successful extensions: 67 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 65 Number of HSP's gapped (non-prelim): 2 length of query: 352 length of database: 492,079 effective HSP length: 78 effective length of query: 274 effective length of database: 359,479 effective search space: 98497246 effective search space used: 98497246 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719253|ref|YP_003874785.1| group 1 glycosyl transferase [Spirochaeta thermophila DSM 6192] (417 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431714|ref|NP_148357.2| glycosyl transferase, group 1 [Aer... 69 2e-13 gi|14601239|ref|NP_147773.1| glycosyl transferase, group 1 [Aero... 59 2e-10 >gi|118431714|ref|NP_148357.2| glycosyl transferase, group 1 [Aeropyrum pernix K1] Length = 385 Score = 68.9 bits (167), Expect = 2e-13 Identities = 65/209 (31%), Positives = 100/209 (47%), Gaps = 28/209 (13%) Query: 212 ILPNLIDTAVFKPVEKSFARELWNLPK-NKKLILFGAISATVDPNKGFHQLLGALEKLRH 270 I+PN +D FKP + PK + L+LF + KG H L+ A RH Sbjct: 183 IIPNGVDVERFKP----------STPKADYPLVLF---LGRLVWRKGAHVLVRAF---RH 226 Query: 271 FPRKVDDIXXXXXXXXXXXTTI------YGFP--VYYMGHVNDDTSLVALYTAXXXXXXP 322 ++ D I YG V +G V ++ +LY++ P Sbjct: 227 VVDEIRDAKLYIGGKGEFEPIIKLLIARYGLENNVKMLGVV-PESEKPSLYSSAWVTAVP 285 Query: 323 SR-QEAFGLVAEESLACGTPVVAFGATGLLDIIDHQHNGYLARPYDPEDLARGIEWVLYE 381 S E+FG+VA ESL+ GTPVVA GL D++ H G L +P ++LA+ + +L + Sbjct: 286 SIVNESFGIVALESLSSGTPVVASRQGGLKDVVKHGKTGLLVKPGSSKELAKALITLLQD 345 Query: 382 SDY-ERLSRNARRKVVEHFSFEKVLPRYL 409 S +R+S AR+ V+E + + KV+P+ L Sbjct: 346 SGLRKRMSEEARKIVLERYDWRKVVPQIL 374 >gi|14601239|ref|NP_147773.1| glycosyl transferase, group 1 [Aeropyrum pernix K1] Length = 363 Score = 59.3 bits (142), Expect = 2e-10 Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 297 VYYMGHVNDDTSLVALYTAXXXXXXPSRQEAFGLVAEESLACGTPVVAFGATGLLDIIDH 356 V+++G +++ ++ + A S E +G+ E+ AC P +A+ GL D + H Sbjct: 243 VHFLGKMSEQEKIMWMQRAWIIVST-SMIEGWGITITEAAACKIPAIAYNVPGLRDSVKH 301 Query: 357 QHNGYLARPYDPEDLARGIEWVLYESDY-ERLSRNARRKVVEHFSFEKVLPRYLALLEDL 415 G L P + E LA+ I W+L ++ +LS NA + FS++ +L +LED+ Sbjct: 302 METGILVEPGNIEQLAKAIAWLLTDNSLRNKLSENA-YNYAQSFSWDNTAITFLNILEDI 360 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 430,305 Number of Sequences: 1700 Number of extensions: 18871 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 3 length of query: 417 length of database: 492,079 effective HSP length: 79 effective length of query: 338 effective length of database: 357,779 effective search space: 120929302 effective search space used: 120929302 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719254|ref|YP_003874786.1| GDP-L-fucose synthase 2 [Spirochaeta thermophila DSM 6192] (370 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601230|ref|NP_147763.1| dTDP-glucose 4,6-dehydratase [Aerop... 44 6e-06 >gi|14601230|ref|NP_147763.1| dTDP-glucose 4,6-dehydratase [Aeropyrum pernix K1] Length = 330 Score = 43.9 bits (102), Expect = 6e-06 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 16/129 (12%) Query: 235 RTPHGVEVEIWGTGTPRREFLWVEDLADACVFLMERIDFDDIVKNFLAGRKEIRNTHINI 294 R HG I+G G+ R++L+VED A A ++E K + N+ Sbjct: 196 RILHGKPPVIYGDGSQIRDWLYVEDTARAIHVVLE---------------KGVDGEIYNV 240 Query: 295 GTGEDIRIKELAELIKEVVGF-KGGIVFNPEKPEGTPVKRTDVSRLHSLGWRHSVELKEG 353 G +K++ I E +G + +V+ +P ++ +LGW V LKEG Sbjct: 241 CGGMASTVKDIVVNILESMGKPRDYLVYGKSRPGEDRRYAMKCDKIRNLGWAPHVTLKEG 300 Query: 354 VERLYEWYV 362 ++ +WY+ Sbjct: 301 LKITVKWYI 309 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 377,901 Number of Sequences: 1700 Number of extensions: 16895 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 2 length of query: 370 length of database: 492,079 effective HSP length: 78 effective length of query: 292 effective length of database: 359,479 effective search space: 104967868 effective search space used: 104967868 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719255|ref|YP_003874787.1| GDP-mannose 4,6-dehydratase [Spirochaeta thermophila DSM 6192] (378 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601230|ref|NP_147763.1| dTDP-glucose 4,6-dehydratase [Aerop... 64 6e-12 >gi|14601230|ref|NP_147763.1| dTDP-glucose 4,6-dehydratase [Aeropyrum pernix K1] Length = 330 Score = 63.9 bits (154), Expect = 6e-12 Identities = 85/349 (24%), Positives = 144/349 (41%), Gaps = 51/349 (14%) Query: 3 LRALITGITGQDGSYLAEFLLSK-GYEVHGLIRRASTFNTHRIDHLYTDPHNPGVRFFLH 61 +R L+TG G GS ++++ +EV L+ T+ R+++L H+ R Sbjct: 1 MRVLVTGGAGFIGSSFVRYIVNTTDWEV--LVYDKLTY-AGRLENL----HDVIDRIGFM 53 Query: 62 YGELSDSGRLTNLIYEVQPHEVYHLGAQSHVRVSFDMPEYTGDVTGLGTTRLLEAIRRSG 121 G+++D + ++ E +P V + A++HV S + P +G +LEAIR+ Sbjct: 54 RGDIADEEQFGRVLTEFEPDVVVNFAAETHVDRSINEPAPFMRTNIIGVFTILEAIRKRI 113 Query: 122 VKTKFYQASSSEMFG---AAPPPQNESTPFYPRSPYAAAKVYAYWMTINYREAYGLFACN 178 + S+ E++G ES P P SPY+A+K + Y YGL Sbjct: 114 DQIVLLHVSTDEVYGDLWNTGKEATESDPLNPSSPYSASKASGDLLIKAYGRTYGLKYRI 173 Query: 179 GILFNHESPRRGETFVTRKITRGLSHILAGKEKKLYLGNLDAQRDWGFAPEYVTCQWLML 238 N+ P + V + I R + IL GK +Y G+ RDW + + ++L Sbjct: 174 VRPCNNYGPYQ---HVEKLIPRTIIRILHGKPPVIY-GDGSQIRDWLYVEDTARAIHVVL 229 Query: 239 QQ-EEPDDYVIGTGETHSVREFVEEAFTYAGVELEWRGKGIETKGIVKSVREEWSDKISP 297 ++ + + Y + G +V++ V G ++ G K P Sbjct: 230 EKGVDGEIYNVCGGMASTVKDIVVNILESMGKPRDYLVYG----------------KSRP 273 Query: 298 GDVVVEIDPRYFRPTEVDVLLADATKAEK--RLGWKPRVTFTQLVRIMV 344 G+ D RY A K +K LGW P VT + ++I V Sbjct: 274 GE-----DRRY------------AMKCDKIRNLGWAPHVTLKEGLKITV 305 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 414,019 Number of Sequences: 1700 Number of extensions: 19300 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 1 length of query: 378 length of database: 492,079 effective HSP length: 78 effective length of query: 300 effective length of database: 359,479 effective search space: 107843700 effective search space used: 107843700 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719256|ref|YP_003874788.1| group 1 glycosyl transferase [Spirochaeta thermophila DSM 6192] (451 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431714|ref|NP_148357.2| glycosyl transferase, group 1 [Aer... 48 6e-07 >gi|118431714|ref|NP_148357.2| glycosyl transferase, group 1 [Aeropyrum pernix K1] Length = 385 Score = 47.8 bits (112), Expect = 6e-07 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 3/150 (2%) Query: 276 FLGRFDKYKGIPYLLRAFDLLPSEVRKRVHLTLAGTGRLDRVSRRLIKKYNDSPSFSLVN 335 FLGR KG L+RAF + E+R L + G G + + + LI +Y + ++ Sbjct: 207 FLGRLVWRKGAHVLVRAFRHVVDEIRD-AKLYIGGKGEFEPIIKLLIARYGLENNVKMLG 265 Query: 336 RWLSEDDICSLMKQCDLVVLPYTHATQSGVVPI-AFHYRKPVLVTATGGLPEQVQFGRLG 394 + E + SL + +P G+V + + PV+ + GGL + V+ G+ G Sbjct: 266 V-VPESEKPSLYSSAWVTAVPSIVNESFGIVALESLSSGTPVVASRQGGLKDVVKHGKTG 324 Query: 395 FVVEAANDYALLSCILTVFHNRDMLKEKRE 424 +V+ + L ++T+ + + K E Sbjct: 325 LLVKPGSSKELAKALITLLQDSGLRKRMSE 354 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.140 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 441,299 Number of Sequences: 1700 Number of extensions: 18406 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 1 length of query: 451 length of database: 492,079 effective HSP length: 80 effective length of query: 371 effective length of database: 356,079 effective search space: 132105309 effective search space used: 132105309 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719257|ref|YP_003874789.1| hypothetical protein STHERM_c15760 [Spirochaeta thermophila DSM 6192] (357 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.146 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 318,749 Number of Sequences: 1700 Number of extensions: 12763 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 0 length of query: 357 length of database: 492,079 effective HSP length: 78 effective length of query: 279 effective length of database: 359,479 effective search space: 100294641 effective search space used: 100294641 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719258|ref|YP_003874790.1| hypothetical protein STHERM_c15770 [Spirochaeta thermophila DSM 6192] (501 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.468 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 579,121 Number of Sequences: 1700 Number of extensions: 28030 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 0 length of query: 501 length of database: 492,079 effective HSP length: 81 effective length of query: 420 effective length of database: 354,379 effective search space: 148839180 effective search space used: 148839180 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719259|ref|YP_003874791.1| DNA polymerase, beta domain-containing protein region [Spirochaeta thermophila DSM 6192] (119 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,147 Number of Sequences: 1700 Number of extensions: 3513 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 119 length of database: 492,079 effective HSP length: 66 effective length of query: 53 effective length of database: 379,879 effective search space: 20133587 effective search space used: 20133587 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719260|ref|YP_003874792.1| polyA polymerase family protein [Spirochaeta thermophila DSM 6192] (364 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.144 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 350,059 Number of Sequences: 1700 Number of extensions: 14882 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 0 length of query: 364 length of database: 492,079 effective HSP length: 78 effective length of query: 286 effective length of database: 359,479 effective search space: 102810994 effective search space used: 102810994 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719261|ref|YP_003874793.1| histidyl-tRNA synthetase [Spirochaeta thermophila DSM 6192] (437 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431143|ref|NP_147398.2| histidyl-tRNA synthetase [Aeropyru... 253 8e-69 >gi|118431143|ref|NP_147398.2| histidyl-tRNA synthetase [Aeropyrum pernix K1] Length = 435 Score = 253 bits (645), Expect = 8e-69 Identities = 164/434 (37%), Positives = 239/434 (55%), Gaps = 16/434 (3%) Query: 3 QPRVLKGFRDFLPDLEARKKSIVRTLEEVFTSFGYLPIDTPVLEYAEILLGKSGGETEKQ 62 +PR +GFRDF P++ +K ++ LE VF S+G+ P+DTP +EY E L GK G E E + Sbjct: 5 RPRPPRGFRDFPPEVMILRKRLLSRLERVFESYGFDPLDTPAVEYWETLSGKYGEEAESR 64 Query: 63 -VYRFTDH-GGRDVALRFDLTVPFARFMAQHMAELYLPFRRYHIAKVFRGENTQRGRYRE 120 ++RF D GR ALR+DLTVP ARF+A + L +PF+RYHI KV+R E Q+GRYRE Sbjct: 65 LIWRFQDPWSGRWYALRYDLTVPLARFVASNPG-LPMPFKRYHIGKVWRHEEPQKGRYRE 123 Query: 121 FMQCDFDIVGPDSTSADLEVLLIMQKALASLGMERFTIHLSHRGVLQD-FLARLGVSEPV 179 F+QCD DIVG AD E++ + ++ +LG+ F + ++ R +L F LG P+ Sbjct: 124 FVQCDADIVGSPYPEADAEIVSLAVDSIDALGLPGFRVRVNDRRLLAGVFEEELGFDNPL 183 Query: 180 EVLRTVDKIRKIGREKVRETLAQLS-DEERAGRILDFIAPGSEPEEALSRMEEGVGAD-- 236 + R +DK+ KIG E VR L +L RI++ I+ P E L + G G++ Sbjct: 184 PIYRAIDKLDKIGVEGVRRELERLGLPGSTVERIMEIISWRGRPGEVLESVRRGYGSNEK 243 Query: 237 -NPHLARLKEIWAVIGELGLAGFFTIDPSITRGLDYYTGVVFETFLSDLPDIGSVCSGGR 295 L L+E+ ++ + + +D S+ RGLDYYTG + E L D P IGSV GGR Sbjct: 244 VREALDHLEEMLSLADDKRV----ELDMSLVRGLDYYTGPILEVVL-DEPRIGSVAGGGR 298 Query: 296 YDNLVGLYSTQSMSGVGASIGLDRLMAAMQELGMLEAIPTMAPEVLVVCMEERFLAHYHX 355 YD LVG+++ + + G SIG++R++ A ELG+ +V VV ++ R+ + Sbjct: 299 YDGLVGMFAGRDIPATGVSIGIERIIDAGLELGVYSLDVKTVAQVAVVVLDRRYYRYAWE 358 Query: 356 XXXXXXXXXXXTEVYPQARKLGQ-QFSYAEKKGIPFALIMGEDEIAAGTMALKDLVARTQ 414 + +R GQ Q A + GIP +G E G + L A+ + Sbjct: 359 AARILRRGGLNVRI-DLSRASGQVQRRKASRLGIPVLAFVGAKEAEGGFLTLYS-AAKGE 416 Query: 415 RVVQGLEEVVDAVE 428 RV L E V AVE Sbjct: 417 RVAVPLGEAVKAVE 430 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 445,734 Number of Sequences: 1700 Number of extensions: 20849 Number of successful extensions: 82 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76 Number of HSP's gapped (non-prelim): 1 length of query: 437 length of database: 492,079 effective HSP length: 80 effective length of query: 357 effective length of database: 356,079 effective search space: 127120203 effective search space used: 127120203 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719262|ref|YP_003874794.1| hypothetical protein STHERM_c15810 [Spirochaeta thermophila DSM 6192] (837 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 750,290 Number of Sequences: 1700 Number of extensions: 31664 Number of successful extensions: 131 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 131 Number of HSP's gapped (non-prelim): 0 length of query: 837 length of database: 492,079 effective HSP length: 85 effective length of query: 752 effective length of database: 347,579 effective search space: 261379408 effective search space used: 261379408 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719263|ref|YP_003874795.1| 3-dehydroquinate synthase [Spirochaeta thermophila DSM 6192] (347 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600814|ref|NP_147337.1| 3-dehydroquinate synthase [Aeropyru... 123 8e-30 >gi|14600814|ref|NP_147337.1| 3-dehydroquinate synthase [Aeropyrum pernix K1] Length = 358 Score = 123 bits (308), Expect = 8e-30 Identities = 86/259 (33%), Positives = 123/259 (47%), Gaps = 5/259 (1%) Query: 59 GEQGKRWESVERILEEGFSRGFGRDAAFLXXXXXXXXXXXXXXXSLYMRGIEVVLVPTTL 118 GE+ K + V R+ + G R S MRG+ V +P+T Sbjct: 73 GERVKSLDWVTRLWDLMLQAGVERSTTVYIIGGGALLDAAGFAASTLMRGLSTVNIPSTT 132 Query: 119 LAMVDAALGGKTGIDFLSYKNMVGTFYPAREVRLAVPFVASLPEREYRSGLAEVIKSAML 178 LA DAA GGKTG++ L KNMVGTF+ R V + VA P+ YR G AE++K L Sbjct: 133 LAAFDAAAGGKTGVN-LRGKNMVGTFHNPRMVLVEPGIVAGQPDEGYRDGFAELVKHVAL 191 Query: 179 GDERLFGXXXXXXXXXXXXXKTLVQEMVERALRVKARVVEADFREGGMRAFLNLGHTFGH 238 +R + + +L K +VV D RE G+R LNLGHT GH Sbjct: 192 SGDR--EPAASLLPQALARRPAPLARLAFWSLGYKMQVVAGDPRERGLRRILNLGHTIGH 249 Query: 239 ALESVTGFSRFTHGEAVAWGIRCALDLGRRLGLTDAAYAERITALLDAYGYPSTVGGGIS 298 ALE+ + ++ +HG +V+ G+ L+L RRL AE + +L G P G++ Sbjct: 250 ALEAASSYT-LSHGRSVSIGLAGELELSRRLAGLPRGEAEDVLDMLSTAGLPLEPPPGLA 308 Query: 299 PPALLEAMRMDKKKQRGKI 317 A + +DKK++ G I Sbjct: 309 GEA-AGLVGLDKKREGGSI 326 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 342,335 Number of Sequences: 1700 Number of extensions: 14795 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 1 length of query: 347 length of database: 492,079 effective HSP length: 78 effective length of query: 269 effective length of database: 359,479 effective search space: 96699851 effective search space used: 96699851 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719264|ref|YP_003874796.1| glycosyl hydrolases family 18 [Spirochaeta thermophila DSM 6192] (644 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.138 0.465 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 634,434 Number of Sequences: 1700 Number of extensions: 28410 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 644 length of database: 492,079 effective HSP length: 83 effective length of query: 561 effective length of database: 350,979 effective search space: 196899219 effective search space used: 196899219 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719265|ref|YP_003874797.1| RNA-binding region RNP-1 [Spirochaeta thermophila DSM 6192] (101 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,387 Number of Sequences: 1700 Number of extensions: 1360 Number of successful extensions: 1 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 101 length of database: 492,079 effective HSP length: 64 effective length of query: 37 effective length of database: 383,279 effective search space: 14181323 effective search space used: 14181323 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719266|ref|YP_003874798.1| polysaccharide biosynthesis protein [Spirochaeta thermophila DSM 6192] (490 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 516,376 Number of Sequences: 1700 Number of extensions: 23466 Number of successful extensions: 87 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87 Number of HSP's gapped (non-prelim): 0 length of query: 490 length of database: 492,079 effective HSP length: 80 effective length of query: 410 effective length of database: 356,079 effective search space: 145992390 effective search space used: 145992390 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719267|ref|YP_003874799.1| ArsR family transcriptional regulator [Spirochaeta thermophila DSM 6192] (106 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,524 Number of Sequences: 1700 Number of extensions: 3100 Number of successful extensions: 7 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 106 length of database: 492,079 effective HSP length: 65 effective length of query: 41 effective length of database: 381,579 effective search space: 15644739 effective search space used: 15644739 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719268|ref|YP_003874800.1| cysteine desulfurase [Spirochaeta thermophila DSM 6192] (384 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601789|ref|NP_148330.1| cysteine desulfurase [Aeropyrum per... 86 2e-18 gi|118431577|ref|NP_148146.2| aminotransferase [Aeropyrum pernix... 47 6e-07 >gi|14601789|ref|NP_148330.1| cysteine desulfurase [Aeropyrum pernix K1] Length = 411 Score = 85.5 bits (210), Expect = 2e-18 Identities = 92/363 (25%), Positives = 146/363 (40%), Gaps = 51/363 (14%) Query: 3 VYLDWAATSPPDPEILDLQRRVAEDLFANPS-SLHTMGRKAQEALHEAREKTATALGTKA 61 VYLD AA++ +++ R + +AN +H + +A +A +A E A +G Sbjct: 21 VYLDNAASTLKPRRVVEAMREFSYRSYANVHRGVHRLSMEASKAYEDAHEVVARLVGGSW 80 Query: 62 ERIYFTSGATESNNIVFTSLLLRR--REGHVVTSAVEHSSAWEPALLLKRLGYEVTSVRP 119 + + FT TE+ + +L R G V+ +A +H S P + RLG + P Sbjct: 81 DEVVFTRNTTEAMQLAALTLAYNGLLRGGEVLVTAADHHSTLLPWVRAARLGGGRARILP 140 Query: 120 RPDGILNPEDVVEA-VRPDTLLVSVMLVNNETGAIQPXXXXXXXXXXXXXXXXHIHSDVV 178 + D++E + DT V+V V+N TG + P + D Sbjct: 141 LDGRGVPRWDLLEDYITEDTRAVAVGHVSNVTGVVAPVEDIVKAAKKVGAL---VVLDSA 197 Query: 179 QAVGKIPVDLEALGVDSASVSMHKFRGPRGVGILY----LARQIEVLYAGGG-------- 226 Q V +PVD +GVD A+ S HK GP G+G+L+ L ++E GGG Sbjct: 198 QGVPHLPVDFRRMGVDMAAFSGHKMLGPTGIGVLWARRDLLEELEPPLGGGGTVSRVRLQ 257 Query: 227 ----------QEWGMRPGTENLPGIVAGAEA--------LSRAVRRREEGAEQASRLMGR 268 W GT + V AEA + R +E +L+ Sbjct: 258 GGSVEIEWEEPPWKFEAGTPPIIEAVGLAEAANMLMEIGMEHVARHEDELTSHTMKLLEP 317 Query: 269 LI-EGLCGMKGVHILPRDRLVAPERYSP--FILTVSFPPVPGEVIQRVLNDAGFAVSTGS 325 L EGL R V P++ I++++ + + +L+ G AV TG Sbjct: 318 LYSEGLI-----------RYVGPDKPGERHGIVSITTHLKSPDELGLLLDRRGIAVRTGL 366 Query: 326 ACA 328 CA Sbjct: 367 HCA 369 >gi|118431577|ref|NP_148146.2| aminotransferase [Aeropyrum pernix K1] Length = 391 Score = 47.4 bits (111), Expect = 6e-07 Identities = 85/385 (22%), Positives = 145/385 (37%), Gaps = 35/385 (9%) Query: 2 RVYLDWAATSPPDPEILDLQRRVAEDLFANPSSLHTMGRKAQEALHEAREKTATALGTKA 61 +VYLD A P ++ D E +S +A + + E+R A +G K Sbjct: 19 KVYLDTAGAGPLTLDVKD----AVEGFLELWNSEGEPWGEALDDILESRRLFAQMVGAKV 74 Query: 62 ERIYFTSGATESNNIVFTSLLLRRREGHVVTSAVEHSSAWEPALLLKRLGYEVTSVRPRP 121 E + G T N +SL L VV+ + + + +R + Sbjct: 75 EEVAAVPGVTYGLNAFLSSLKLPPDSNVVVSETNFPTGVYTFHAMARRGLIREVRIASAS 134 Query: 122 DGILNPEDVVEAVRPDTLLVSVMLVNNETGAIQPXXXXXXXXXXXXXXXXHIHSDVVQAV 181 DG + + + T +V V +V+ TG + SDV A Sbjct: 135 DGCVGLDGFERLIDDSTSIVYVDMVSWITGCREDLRTLAELAHSHGALMV---SDVFHAA 191 Query: 182 GKIPVDLEALGVDSASVSMHKF-RGPRGVGILYLARQ----IEVLYAGGGQEWGMRPGTE 236 G P+D++ LG+D+A +K+ G G G Y++ + +E +++G W M Sbjct: 192 GVYPIDVKKLGLDAAFTGSYKWLLGLHGGGFAYVSEELLPSLEPMFSG----W-MAIDDS 246 Query: 237 NLPGIVAGAEALSRAVRRREEGAEQASRLMGRLIEGLCGMKGVHILPRDRLVAPERYSPF 296 + + G SR RE +AS +++E + + L Y Sbjct: 247 VMERMARGDPLFSRPFNVRE--FRRASD--AKVLEWGTWPAIAFVSLKASLKMLSAYDAP 302 Query: 297 ILTVSFPPVPGEVIQRV---LNDAGFAVSTGSACAS--------HKGKGRRVLDAMGIPD 345 L S G +++R+ L D G T A+ H + R L++ GI Sbjct: 303 GLYASH---TGRLVKRLIDSLTDMGVETVTPRGMAAGIVVFRHRHPERLGRFLESRGIVA 359 Query: 346 GLSFSSIRISIGPDTTEDDIEEFLR 370 + S+R+SI + +D+E LR Sbjct: 360 SVRPGSVRVSIHFYNSREDVEALLR 384 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 394,804 Number of Sequences: 1700 Number of extensions: 17977 Number of successful extensions: 77 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 72 Number of HSP's gapped (non-prelim): 3 length of query: 384 length of database: 492,079 effective HSP length: 78 effective length of query: 306 effective length of database: 359,479 effective search space: 110000574 effective search space used: 110000574 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719269|ref|YP_003874801.1| thiamine biosynthesis protein ThiI [Spirochaeta thermophila DSM 6192] (393 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431057|ref|NP_147253.2| thiamine biosynthesis protein ThiI... 120 8e-29 >gi|118431057|ref|NP_147253.2| thiamine biosynthesis protein ThiI [Aeropyrum pernix K1] Length = 396 Score = 120 bits (300), Expect = 8e-29 Identities = 102/362 (28%), Positives = 164/362 (45%), Gaps = 19/362 (5%) Query: 4 VFIVMCGELTLKGENKGFFEETLKRNILQRI-------GGDVQIEHKHQRFYIAC-SPEQ 55 V +V E+ +KG G+ ++R +L+ + G + ++E R + SP Sbjct: 5 VVLVRYSEIAVKG---GYTRSRMERLLLRALEESLAAAGVEAEVERLQGRVLVRLRSPGD 61 Query: 56 ESRVREALGSTFGIVKYAPALELPKXXXXXXXXXXXXXXXXXXTTGTTVFKIEAKRTDKS 115 + A FG+ +PA+E+ VF++ A+R+ Sbjct: 62 AAAAARASARVFGVKSVSPAVEVE--YSGIEDLAEKAAEFFGERVRGRVFRVRARRSGVE 119 Query: 116 FPLTSYDIAKELGALLLEHDPRLSVRMTRPDWSIKVEIRDK-AYLFWEEXXXXXXXXXXX 174 TS D+ + LG LLLE V + +P+++ VE+R + AY F Sbjct: 120 -GFTSKDVERLLGKLLLERGAG-GVDLEKPEYTAYVEVRGRRAYFFDTINPGPGGLPVGS 177 Query: 175 XXXXXXXXXXXIDSPVAGYLMAKRGLALHAAYFHT-YPYTSDDARKKVETLAAILSRWTG 233 DS VA +++ +RG +H A++ P + A + +TLA + W Sbjct: 178 EEPSLALYSGGFDSGVAAWMIMRRGSPVHLAFYDFGVPEALEVAVEGAKTLAGEWA-WGY 236 Query: 234 RVDLHVVPFTEAQIHINRHARKNEITLHMRAAMVRIATILAGRVGASCLITGESLGQVAS 293 R L+VV F A + +N + + TL +R M+ A LA R G L+TGES+GQVAS Sbjct: 237 RPRLYVVNFRGAALIVNGLVKPSYRTLVLRRLMLLHAQDLAAREGFEALVTGESVGQVAS 296 Query: 294 QTAESMRFTQHTTDLPVFRPLVGMDKQEIIALARRIGTFETSILPYADCCTLFSPEHPLI 353 QT ++R +LPV RPL GMDK EI+ +R IG ++ + + C + P +P Sbjct: 297 QTVRNLRLISSGLELPVLRPLAGMDKDEIVEKSREIGLYDIA-RRQVEVCGVDQPPNPRA 355 Query: 354 RP 355 P Sbjct: 356 SP 357 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 315,936 Number of Sequences: 1700 Number of extensions: 11311 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 1 length of query: 393 length of database: 492,079 effective HSP length: 79 effective length of query: 314 effective length of database: 357,779 effective search space: 112342606 effective search space used: 112342606 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719270|ref|YP_003874802.1| Imidazole glycerol phosphate synthase cyclase subunit [Spirochaeta thermophila DSM 6192] (261 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 285,840 Number of Sequences: 1700 Number of extensions: 13441 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 261 length of database: 492,079 effective HSP length: 75 effective length of query: 186 effective length of database: 364,579 effective search space: 67811694 effective search space used: 67811694 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719271|ref|YP_003874803.1| imidazole glycerol phosphate synthase subunit HisH [Spirochaeta thermophila DSM 6192] (204 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602074|ref|NP_148620.1| GMP synthase [Aeropyrum pernix K1] 48 2e-07 gi|14602143|ref|NP_148691.1| anthranilate synthase component II ... 45 1e-06 >gi|14602074|ref|NP_148620.1| GMP synthase [Aeropyrum pernix K1] Length = 512 Score = 47.8 bits (112), Expect = 2e-07 Identities = 43/140 (30%), Positives = 60/140 (42%), Gaps = 18/140 (12%) Query: 66 DEALREVVEQGVPFLGICIGCQLVLEFSEERETDTLGFLRGRVVRFPSLPGLKVPHMGWN 125 DEA V++ G P LGIC G QL+ + L G V R P +P G Sbjct: 70 DEAAAMVLQLGKPVLGICYGHQLLAK-----------VLGGEVGRSP------LPEFGPT 112 Query: 126 GVEHVKPHPLFEGIPSGASFYFVHSYYPVPEEKESIVATTEYGVRFASAFAKDNLFAVQF 185 VE + L G+PS + H + E+ V G A+ +F VQ+ Sbjct: 113 EVEVLDYGILLNGLPSRFKVWMSHYDAVLRPPGEAKVLARTPGSPVAAMELWGRVFGVQW 172 Query: 186 HPE-KSGPYGLRLLENFFSL 204 HPE + YG +L+N+ SL Sbjct: 173 HPEVRHTQYGREVLDNWLSL 192 >gi|14602143|ref|NP_148691.1| anthranilate synthase component II [Aeropyrum pernix K1] Length = 196 Score = 45.1 bits (105), Expect = 1e-06 Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 23/139 (16%) Query: 67 EALREVVEQGVPFLGICIGCQLVLEFSEERETDTLGFLRG-RVVRFPSLPGLKVPHMGWN 125 + +RE+ + P LGIC+G Q++ G L G +V R P K H + Sbjct: 71 DIVREMA-RNTPVLGICLGHQII------------GLLYGAKVERAP-----KPMHGKTS 112 Query: 126 GVEHVKPHPLFEGIPSGASFYFVHSY--YPVPEEKESIVATTEYGVRFASAFAKDNLFAV 183 VEH H L+ G+P HS Y PEE + + + V + A+ ++ V Sbjct: 113 PVEHYG-HKLYRGVPRVFQAMRYHSLAVYDPPEELQVDSVSLDDKVIMGISHAELPVYGV 171 Query: 184 QFHPEKSG-PYGLRLLENF 201 QFHPE G P+G ++ NF Sbjct: 172 QFHPESIGTPHGEVIVRNF 190 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.142 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 200,129 Number of Sequences: 1700 Number of extensions: 8305 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 2 length of query: 204 length of database: 492,079 effective HSP length: 73 effective length of query: 131 effective length of database: 367,979 effective search space: 48205249 effective search space used: 48205249 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719272|ref|YP_003874804.1| hypothetical protein STHERM_c15910 [Spirochaeta thermophila DSM 6192] (272 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.143 0.482 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 341,720 Number of Sequences: 1700 Number of extensions: 18759 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 0 length of query: 272 length of database: 492,079 effective HSP length: 75 effective length of query: 197 effective length of database: 364,579 effective search space: 71822063 effective search space used: 71822063 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719273|ref|YP_003874805.1| isoleucyl-tRNA synthetase [Spirochaeta thermophila DSM 6192] (1048 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600670|ref|NP_147189.1| isoleucyl-tRNA synthetase [Aeropyru... 648 0.0 gi|118431600|ref|NP_148179.2| valyl-tRNA synthetase [Aeropyrum p... 229 2e-61 gi|14601141|ref|NP_147669.1| leucyl-tRNA synthetase [Aeropyrum p... 82 5e-17 gi|14601199|ref|NP_147731.1| methionyl-tRNA synthetase [Aeropyru... 65 1e-11 >gi|14600670|ref|NP_147189.1| isoleucyl-tRNA synthetase [Aeropyrum pernix K1] Length = 1064 Score = 648 bits (1672), Expect = 0.0 Identities = 377/1042 (36%), Positives = 574/1042 (55%), Gaps = 43/1042 (4%) Query: 14 MEEDILAFWQEHGIFEKSIARRAGA-EEYVFYDGPPFATGLP-HFGHFVPGTVKDIFPRY 71 +E + ++W+E+ I+ K + + A ++ F DGPP+A+ H G VKD+ R+ Sbjct: 18 LESFVKSYWEENSIYRKVKEKSSRAPRKFYFLDGPPYASAKSIHIGTAWNKVVKDVVLRF 77 Query: 72 KTMRGYKVERRFGWDCHGLPVEYEMEKELGISGKRQIEE-YGVARFNEACRSIVLRYVKE 130 M GY V + G+D HGLP+E ++E+ LG+ KR+IEE GV F AC+ R+V E Sbjct: 78 YRMTGYNVWDKPGYDTHGLPIEVKIEQSLGVRVKREIEEKVGVENFIAACK----RFVDE 133 Query: 131 WRQIVTR----MGRWVDFDNDYKTMDPDYMETIWWVMKQLWEKGLLYEGYYILPYCPRCS 186 + +TR +G ++D++N Y T +Y+E+ WW++K+ WEKGLLY+GY +L +CPRC Sbjct: 134 NMEAMTRQFKEIGVFMDWENPYVTYRDEYIESGWWLVKKAWEKGLLYKGYRVLHWCPRCE 193 Query: 187 TVLSNHELNLGGYQDVHDPAITVRFRVKDDNPKGWKDTYILAWTTTPWTLPSNLALALGP 246 T L+++E++ Y+++ DP+I V+F V+ G + Y+L WTTTPWTLP+N + P Sbjct: 194 TTLADYEVS--EYRELEDPSIYVKFPVE-----GREGEYLLVWTTTPWTLPANAFVMAHP 246 Query: 247 DIEYVRVKDGEDYYVLAKERLSTYYRSE--DEYEIVETFTGKDAVGIPYEPLFPYFADLA 304 D+EYV+V+ G D +LAK RL R EYE++E G G+ Y D Sbjct: 247 DMEYVKVRVGRDTLILAKARLDHVMREAGVSEYEVLEVLKGSQLEGLRYRHPLEDVVDAQ 306 Query: 305 GQGAFRXXXXXXXXXXX---XXXIVHIAPGFGEDDYRLLKDSGLPVVCPVDAEGRFTGEV 361 + + +VH APG G DY + + G PVV VD G T Sbjct: 307 RELSKWHKVVMAPEAVTPHEGSGLVHSAPGHGTIDYEIAQRIGAPVVSLVDERGFMTEAA 366 Query: 362 GDYEGLFVK-DADKEIIRRLKEEGKLVKREQYLHAYPHCWRCKSPLIYRAISSWFVAVEK 420 G Y GL+ + +A+K I+ L+ G L +H YP CWRCK+PL+ RA + WFVAV + Sbjct: 367 GKYSGLYFRGEANKAIVEDLRARGALFHAATIVHRYPVCWRCKTPLLLRATTQWFVAVTR 426 Query: 421 IKERMIANNEKIYWMPSHIKHGRFGKWLENARDWAISRNRYWGNPLPIWRCEACGHTECI 480 +K +++ EK+ W P K RF L RDW ISR RYWG PLP+WRC +CG+ + Sbjct: 427 LKNQLMREAEKVEWQPGWAKT-RFMNMLRELRDWVISRQRYWGIPLPVWRCSSCGYEHVV 485 Query: 481 GSRQELKEKSGVWPEDLHKHFVDEITYPCPSCGGTMRRIPEVLDCWFESGAMPYAQNHYP 540 GS +EL+ G PE+LH+ +VD + CP CGG+M+R+P+VLD WF+SG YA YP Sbjct: 486 GSVEELESMGGRRPENLHRPWVDRVELKCPRCGGSMKRVPDVLDVWFDSGIAFYASLGYP 545 Query: 541 FENKEKFERHFPADFVCEGIDQTRGWFYTLLVLSTALFDKPPFLNNITTGLVLAADGKKM 600 ++E +ER P DF+ EG DQ RGWF++LL F + P+ + G L G++M Sbjct: 546 -RDRETWERLKPVDFIVEGHDQIRGWFFSLLRSGVIGFGETPYRRVLVHGFALDEQGREM 604 Query: 601 SKSERNYTDPKDVIETFGADALRLFLMHSAVVRAEELRYSDEGVREVLKNVLIPLWNAYA 660 KS NY D +++I D +R +++ + V E+LR+S +G+ ++++ +WN YA Sbjct: 605 HKSLGNYVDFEELIAKVPRDVVRFWVLQNTV--WEDLRFSWKGL-DLMRRDFNVIWNVYA 661 Query: 661 FFVTYANIDGIRP----TAPPEDPAHPLDRWILS---EAQRLVLTVTEEMDRYDLVRAID 713 F Y +D P + ED DRWILS +R LT E++ +D RA+ Sbjct: 662 FASIYMGLDRFDPRRTSLSSVEDSLEVEDRWILSRLASLKRRYLTAMEDLRIHDAARALR 721 Query: 714 PIVAFIDSLNNWYIRRSRRRFWKSESDADKREAYATLWTVLMTLVKVAAPIVPFITEEIY 773 + I+ +++WY+R RRR W+ KR AYATL+ VL + +AAP++P+ E +Y Sbjct: 722 SFI--IEDVSHWYLRIIRRRVWEEVDTPSKRAAYATLYKVLWEWLLMAAPLIPYTAEYLY 779 Query: 774 RNL--RTEEMP-DSVHLCDWPEVDERRRDTVLEEKMRIVRRAVSLGRALRSEHNIKTRQP 830 + EE P +S+H+ D PE ++ D+ LEE M R + + R+E +K R+P Sbjct: 780 IKVFREAEERPEESIHMLDMPEPEDHLIDSTLEEDMEKARMVLEAILSARNEAGLKLRRP 839 Query: 831 LKAIYLVTRDEHERRVLMEMEDIVREELNVKQVVYRENE--DDVVEYRAKPNYPVLGKRL 888 ++ + + + L +E ++R N K++ + + YR +P+Y LG + Sbjct: 840 VRRVIIAASNPGVEGSLRRLEGLIRLMANAKEIEFAPASALEATRIYRVEPDYGRLGPKY 899 Query: 889 GPLMKKAARRIEALSMEEIKGLLDGATLVLDLDGERLELTSEGIVVQRIEKAGLKVLNEG 948 M K R IE E + L + + +G ++LT E + ++ LKV + Sbjct: 900 KRDMPKVLRLIEEKGGEIGRVLAEKGVYEGEYEGLPVKLTLEDVSLKAEYPEWLKVRDTP 959 Query: 949 SLTVALDTELSAELVREGLVRDFVRVVQNFRKEKGLEVTDRIRLHYQVPDDLAEAIEAFK 1008 VA+DT L+ E V EGL RD VR +Q RKE G V D + + Q +D+ EA+ A K Sbjct: 960 LGLVAVDTRLTKEEVLEGLARDIVRRIQAMRKEAGYSVEDYVEVWIQGGEDVVEAVNALK 1019 Query: 1009 EYVMNETLAVALVPRDDGQGLE 1030 EY+ ET A+ L + G+E Sbjct: 1020 EYIKRETRALKLEVGEPPSGVE 1041 >gi|118431600|ref|NP_148179.2| valyl-tRNA synthetase [Aeropyrum pernix K1] Length = 823 Score = 229 bits (585), Expect = 2e-61 Identities = 220/838 (26%), Positives = 352/838 (42%), Gaps = 101/838 (12%) Query: 15 EEDILAFWQEHGIFEKSIARRAGAEEYVFYDGPPFATGLPHFGHFVPGTVKDIFPRYKTM 74 EE +L+ W + + ++ E V PP+ +G H G T D+ RY + Sbjct: 19 EEKLLSLWDAEDLHKSTLDPDDPREIVVIDTPPPYPSGKWHVGGAAHYTQIDMIARYFRL 78 Query: 75 RGYKVERRFGWDCHGLPVEYEMEKELGISGKRQIEEY-GVARFNEACRSIVLRYVKEWRQ 133 +GY V F D +GLPVE ++EK G+ G RF C + + E Q Sbjct: 79 KGYNVVAPFYADRNGLPVEVQVEKTYGVVAHEMARTTEGRERFLALCSEFLDKVESEIVQ 138 Query: 134 IVTRMGRWVDFDNDYKTMDPDYMETIWWVMKQLWEKGLLYEGYYILPYCPRCSTVLSNHE 193 + R+G D+ + T P Y LW +GL+YE + +CPRC T L+ E Sbjct: 139 LWRRLGCGFDYWRE-GTDSPRYRSMTQATFIDLWRRGLIYEAERPVRWCPRCKTTLAEAE 197 Query: 194 LNLGGYQDVHDPAITVRFRVKDDNPKGWKDTYILAWTTTPWTLPSNLALALGPDIEYVRV 253 + +++ D V++R+++D ++ TT P L ALA P+ Sbjct: 198 IE---HKEDEDFIYYVKYRLEEDGRD------LVVATTRPELLAGCAALAYHPE------ 242 Query: 254 KDGEDYYVLAKERLSTYYRSEDEYEIVETFTGKDAVGIPYEPLFPYFADLAGQGAFRXXX 313 E Y LA GK A+ PL+ + + A + Sbjct: 243 --DERYKGLA---------------------GKTAIA----PLYGHRVKIVEHPAVKKDF 275 Query: 314 XXXXXXXXXXXIVHIAPGFGEDDYRLLKDSGLPVVCPVDAEGRFTGEVGDYEGLFVKDAD 373 ++ I E+D RL + L +D G G GL VK+A Sbjct: 276 GTG--------LMMICSYGDEEDVRLFLELDLKPKVLIDENGVMNENAGPIAGLPVKEAR 327 Query: 374 KEIIRRLKEEGKLVKREQYLHAYPHCWRCKSPLIYRAISSWFVAVEKIKERMIANNEKIY 433 + I L+ EG LVK+E+ +H+ P CWRCK+PL F+ K+ + K+ Sbjct: 328 RRIAEILEREGLLVKKERIVHSVPVCWRCKTPLQIIHRRELFLRQLDFKDAVKQAAAKMD 387 Query: 434 WMPSHIKHGRFGKWLENAR-DWAISRNRYWGNPLPIWRCEACGHTECIGSRQELKEKSGV 492 + P + + W+++ + DW ISR R++G +P+W CE CG K Sbjct: 388 FKP-EMHRKKLYDWIDSIKMDWPISRERFYGTEIPLWTCEKCG------------AKLVP 434 Query: 493 WPEDLHKHFVDEITY-PCPSCGGTMRRI---PEVLDCWFESGAMPYAQNHYPFENKEKFE 548 P ++ + +E + CP CG R + V D WF+S P + ++ K +E Sbjct: 435 EPGRYYRPWAEEPPWDSCPRCGAPRRYLKGETRVFDTWFDSSISPLYVTRWMWD-KRFYE 493 Query: 549 RHFPADFVCEGIDQTRGWFYTLLVLSTALFDKPPFLNNITTGLVLAADGKKMSKSERNYT 608 R +G D R W Y ++ L KP F TGL L G+ M KS N Sbjct: 494 RASRNVLRPQGQDIIRTWLYYSILRVLQLTGKPAFRWVRITGLGLDPKGRPMHKSLGNVI 553 Query: 609 DPKDVIETFGADALRLFLMHSAVVRAEELRYSDEGVREVLKNVLIPLWNAYAFFVTYANI 668 DP+ +I +G DA R + +A + + R+ DE + +N LWN F ++ Sbjct: 554 DPEPIIAKYGGDAFRFWAAIAAKL-GYDYRF-DENKVKTGRNFATKLWNLARFVSSFP-- 609 Query: 669 DGIRPTAPPEDPAHPLDRWILSEAQRLVLTVTE---EMDRYDLVRAIDPIVAFIDSLNNW 725 RP P + A +D+ L+ A + + E+D Y+ I + D + Sbjct: 610 ---RPEGSPLEKATEVDKAFLALADEYLEAADKAYGELDVYEPANLIYELA--WDIFASH 664 Query: 726 YIRRSRRRFWKSE---SDADKREAYATLWTVLMTLVKVAAPIVPFITEEIYRNLRTEEMP 782 Y+ + R + + ++ A+ATL +L ++ +PI+PF+T+ I+R L Sbjct: 665 YVELVKERSYNRSGLFTREEQEAAWATLHELLRRILVALSPIMPFVTDAIHRRL----YG 720 Query: 783 DSVHLCDWPE---VDERRRDTVLEEKMRIVRRAVSLGRA---LRSEHNIKTRQPLKAI 834 SVH WP+ E RR+ L K R++ VS+ +A L+ K +PL + Sbjct: 721 SSVHRQRWPDPLFTPEERRE--LAGKARLI---VSVNKAVWNLKRSMGKKLYEPLDTV 773 >gi|14601141|ref|NP_147669.1| leucyl-tRNA synthetase [Aeropyrum pernix K1] Length = 959 Score = 82.4 bits (202), Expect = 5e-17 Identities = 135/602 (22%), Positives = 227/602 (37%), Gaps = 89/602 (14%) Query: 354 EGRFTGEVGDYEGLFVKDADKEIIRRLKEEGKLVKREQYLHAYPHCWRCKSPLIYRAISS 413 EG G + GL V +A ++++ L+E G + R L +C RC + + + Sbjct: 397 EGIMLETTGRFSGLKVAEAKEKVVEWLEERGAAL-RIYTLPQEVYC-RCGARTHVKIVED 454 Query: 414 -WFVAVEKIKERMIANNE--KIYWMPSHIKHGRFGKWLENARDWAISRNRYWGNPLPI-- 468 WF+ K + + +A ++ ++P H++ F +E RDWA + G PLP Sbjct: 455 QWFLLYSKPEWKALAREAVARMEFLPGHVRRD-FEAIIEALRDWAFTHKGELGTPLPWDR 513 Query: 469 -WRCEACGHTEC------IGSRQELKEKSGVWPEDLHKHFVDEITYPCPSCGGTMRR--I 519 W E+ + I + EK GV PE L D + G RR I Sbjct: 514 EWVIESLSDSTIYMAYYTIAKYTQHPEKYGVEPEMLTPEVFDYVFLGAGDPGEVSRRSGI 573 Query: 520 PEVLDCWFESGAMPYAQNHYPFENKEKFERHFPADFVCEGIDQTRGWFYTLLVLSTALFD 579 P+ L E + +F +P D G D + TA+F Sbjct: 574 PQGL----------------LEEMRREFLYWYPLDMRISGKDLIPNHLVFFIFHHTAIFP 617 Query: 580 KPPFLNNI-TTGLVLAADGKKMSKSERNYTDPKDVIETFGADALRLFLMHSAVVRAEELR 638 + + I G VL A G+KMSKS+ N+ + ++ +GADA R + V+ + Sbjct: 618 RELWPRAIGVNGWVLVA-GEKMSKSKGNFILLRQALDWWGADATR----WAEVLAGADSG 672 Query: 639 YSDEGVREVLKNVLIPLWNAYAFFV--TYANIDGIRPTAPPEDPAHPLDRWILSEAQRLV 696 D + + + L + + FV Y P +DRW S + Sbjct: 673 LDDANFEPSVADSAVSLLSQWLDFVRENYGR--------PARREERWVDRWFESRLNSTI 724 Query: 697 LTVTEEMDRYDLVRAIDPIVAFIDSLNNWYIRRSRRRFWKSESDADKREAYATLWTVLMT 756 VT M+ + A+ + WY + R++ S + RE + + T Sbjct: 725 ARVTRLMEEANFKTAL---------VEAWYKLQESYRWYLRRSGGEPREDLLRRFIEVQT 775 Query: 757 LVKVAAPIVPFITEEIYRNLRTEEMPDSVHLCDWPEVDERRRDTVLEEKMRIVRRAVS-- 814 L + AP P EE + + E + WPE DE + +E V+ + Sbjct: 776 L--LIAPFAPHTAEEAWEAMGREGFAST---ASWPEPDESKISPEVEAAEETVQAVLEDA 830 Query: 815 ------LGRALRSEHNIKTRQPLKAIYLVTRDEHERRVLMEMEDIVREELNVKQVVYREN 868 +G A + +A+ V R R M++ +RE V+ V RE Sbjct: 831 REVLSLIGGADTLVVTVAAEWKYRAVEAVRR---ARERGASMKEALREAFKVEGVDKREA 887 Query: 869 EDDVVEYRAKPNYPVLGKRLGPLMKKAARRIEALSMEEIKGLLDGATLVLDLDGERLELT 928 V + P ++++AA R E++ L D A L+ + G ++ + Sbjct: 888 ARLVQQLSRAPE----------VLRRAAPR-----SVELEALRDAAQLLQEELGVKVVVE 932 Query: 929 SE 930 +E Sbjct: 933 TE 934 Score = 75.5 bits (184), Expect = 6e-15 Identities = 75/291 (25%), Positives = 122/291 (41%), Gaps = 28/291 (9%) Query: 14 MEEDILAFWQEHGIFEKSIARRAGAEEYVFYDGPPFATGLPHFGHFVPGTVKDIFPRYKT 73 +EE W+E +FE + G ++ P+ PH G DI RYK Sbjct: 7 VEEKWQERWREARLFEAD--PQPGRRKFFITFPYPYVNAYPHLGSAFTILRVDIMARYKR 64 Query: 74 MRGYKVERRFGWDCHGLPV----------EYEMEKELGISGKRQIEEYGVARFNEACRSI 123 MRGY V GW G P+ + + K L G I E + RF + R Sbjct: 65 MRGYNVLFPQGWHATGGPIVSSALRVREGDPRIIKTLRDMG---IPEEDIPRFRDP-RYW 120 Query: 124 VLRYVKEWRQIVTRMGRWVDFDNDYKT--MDPDYMETIWWVMKQLWEKGLLYEGYYILPY 181 V + K WR+ + R G +D+ ++ T ++P Y I W +L EKG + +G + + + Sbjct: 121 VEFFTKAWRRDLERYGMSIDWRREFYTTSLNPAYSRFIEWQYLKLREKGFVGKGRHPVVW 180 Query: 182 CPRCSTVLSNHELNLGGYQDVH-DPAITVRFRVKDDNPKGWKDTYILAWTTTPWTLPSNL 240 CP+ V+ +H+ Y + A+ ++FR +D A T P T+ Sbjct: 181 CPKEQKVVGDHD-RPDEYAGISPQEAVIIKFRGRD-------GLVYPALTYRPETVFGVT 232 Query: 241 ALALGPDIEY-VRVKDGEDYYVLAKERLSTYYRSEDEYEIVETFTGKDAVG 290 L + PD Y V DGE+ +++ ++ I+E G+ +G Sbjct: 233 NLWVHPDATYLVAEVDGEERWIIGEQAARELADQGHRVVILERIEGRRLLG 283 >gi|14601199|ref|NP_147731.1| methionyl-tRNA synthetase [Aeropyrum pernix K1] Length = 572 Score = 64.7 bits (156), Expect = 1e-11 Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 26/149 (17%) Query: 40 EYVFYDGPPFATGLPHFGHFVPGTVK-DIFPRYKTMRGYKVERRFGWDCHGLPVEYEMEK 98 +YV P+ +PH G + + DI+ RY +RG +V G D HG P+E E K Sbjct: 3 KYVVTSAWPYVNHVPHLGTLIGSVLSADIYARYLRLRGRQVVFVSGSDEHGTPIELEARK 62 Query: 99 ELGISGKR---QIEEYGVARFNEACRSIVLRYVKEWRQIVTRMGRWVDFDNDYKTMDPDY 155 + G+ K Q+ EY V K WR+ + FDN +T P + Sbjct: 63 K-GVHPKELTDQVHEYDV---------------KMWREYR------ISFDNYSRTESPVH 100 Query: 156 METIWWVMKQLWEKGLLYEGYYILPYCPR 184 E + MK+L E G ++ +LPYC R Sbjct: 101 KEFVMEFMKKLEENGYIFSQEEVLPYCER 129 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,118,013 Number of Sequences: 1700 Number of extensions: 52135 Number of successful extensions: 207 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 178 Number of HSP's gapped (non-prelim): 8 length of query: 1048 length of database: 492,079 effective HSP length: 86 effective length of query: 962 effective length of database: 345,879 effective search space: 332735598 effective search space used: 332735598 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719274|ref|YP_003874806.1| CDP-alcohol phosphatidyltransferase [Spirochaeta thermophila DSM 6192] (269 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.333 0.146 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 194,435 Number of Sequences: 1700 Number of extensions: 6066 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 269 length of database: 492,079 effective HSP length: 75 effective length of query: 194 effective length of database: 364,579 effective search space: 70728326 effective search space used: 70728326 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719275|ref|YP_003874807.1| glycoside hydrolase family protein [Spirochaeta thermophila DSM 6192] (1000 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,129,905 Number of Sequences: 1700 Number of extensions: 55789 Number of successful extensions: 151 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 151 Number of HSP's gapped (non-prelim): 0 length of query: 1000 length of database: 492,079 effective HSP length: 86 effective length of query: 914 effective length of database: 345,879 effective search space: 316133406 effective search space used: 316133406 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719276|ref|YP_003874808.1| hypothetical protein STHERM_c15950 [Spirochaeta thermophila DSM 6192] (194 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 201,450 Number of Sequences: 1700 Number of extensions: 8650 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 194 length of database: 492,079 effective HSP length: 72 effective length of query: 122 effective length of database: 369,679 effective search space: 45100838 effective search space used: 45100838 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719277|ref|YP_003874809.1| hypothetical protein STHERM_c15960 [Spirochaeta thermophila DSM 6192] (667 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 671,900 Number of Sequences: 1700 Number of extensions: 29326 Number of successful extensions: 74 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74 Number of HSP's gapped (non-prelim): 0 length of query: 667 length of database: 492,079 effective HSP length: 83 effective length of query: 584 effective length of database: 350,979 effective search space: 204971736 effective search space used: 204971736 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719278|ref|YP_003874810.1| hypothetical protein STHERM_c15970 [Spirochaeta thermophila DSM 6192] (34 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,672 Number of Sequences: 1700 Number of extensions: 517 Number of successful extensions: 0 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 34 length of database: 492,079 effective HSP length: 8 effective length of query: 26 effective length of database: 478,479 effective search space: 12440454 effective search space used: 12440454 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719279|ref|YP_003874811.1| alpha-amylase type A isozyme precursor [Spirochaeta thermophila DSM 6192] (437 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 493,666 Number of Sequences: 1700 Number of extensions: 22745 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 0 length of query: 437 length of database: 492,079 effective HSP length: 80 effective length of query: 357 effective length of database: 356,079 effective search space: 127120203 effective search space used: 127120203 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719280|ref|YP_003874812.1| hypothetical protein STHERM_c15990 [Spirochaeta thermophila DSM 6192] (630 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aero... 50 2e-07 gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad5... 47 1e-06 gi|14601261|ref|NP_147796.1| surface layer protein [Aeropyrum pe... 42 3e-05 >gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aeropyrum pernix K1] Length = 791 Score = 49.7 bits (117), Expect = 2e-07 Identities = 72/352 (20%), Positives = 132/352 (37%), Gaps = 54/352 (15%) Query: 304 KNALATGLSESAASVEEITRNIGSFREMVEHLERAIDVTGGAISSIVGRIEEIHQDIQRQ 363 + A T +E A + E+ IG E +E L++ A S+ G ++EI + Sbjct: 392 REAEETEAAEVLAELTEVEIEIGELMEELETLQQK------AASANQGEVQEILDE---- 441 Query: 364 XXXXXXXXXXXXXXXXXXQQASSLARERREGLQHLMELIRENGEKIAGTQEVISTVSREI 423 +ASSL E R L I E EKIA + + ++ Sbjct: 442 -------------AGALIDRASSLLAEARSLLDE--GRIAEAKEKIAQAEAALEKADSKL 486 Query: 424 TNVQEIIEIIDSIAEQTNILSMNAAIESAHAGEAG-------KGFAVVAEEIRKLAESTE 476 + I+E+++ AE+ ++ A E+ EA G V E + +L E+ E Sbjct: 487 DTAEAILEVVEEYAERARE-AIEEAEEALAKAEAKLQLAAQLSGSEAVEEALNRLEEAKE 545 Query: 477 Q-------HAGGITRALKGMTEQVTKALQTSNESAE-SFEHIREEMKKFTYSLEEIASIM 528 + ++ G + E+ + + E AE + E +E + + +EE+ + Sbjct: 546 KLEAAKEAYSNGRYGEAIVLAEEAASIAEEAKELAEKAIEAAQEAVSEVLNQVEELLDRV 605 Query: 529 TQLSTASTQILEHIHTITRITGKIKGESDEIAGRISEIHQAAESTQSTS----------- 577 L I E +T +I+ DE+ G++ + E S + Sbjct: 606 KDLQEEIEDIAEKAREAGVLTEEIQAAIDEVLGKLDQARSLLEEADSLAKEGDIDGARQK 665 Query: 578 LMVKQSXXXXXXXXXXXSKAMHE--VDSLAQEMKLRMDELKERVHEFELEEA 627 L + ++M E + L E++ ++EL+E+ E E A Sbjct: 666 LGEARDVIEEAVSMVRDIRSMVEQAIGDLIDELRRLIEELREKAAELNTEAA 717 >gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1] Length = 919 Score = 47.0 bits (110), Expect = 1e-06 Identities = 84/479 (17%), Positives = 177/479 (36%), Gaps = 52/479 (10%) Query: 189 SQLMRLSSEVQTHVTRTKQLIHTGXXXXXXXXXXXXXXXXXRITRSLSQRIRMINTLIGE 248 S+ L SE+ T + L++ R S I + E Sbjct: 247 SEAKALQSEIGKLETMEEMLVNVTSMIRSERSKLDTINTRLRYAESKISSIDDLEKRRAE 306 Query: 249 IKTQRITPSIIRELDTLGGRRDELGEIALHTSQVMDVLRSFLLSVQQAAAEVEALKNALA 308 ++ + + EL L R D+LG + D + L V + E+E+ + Sbjct: 307 LRAKASLAHEVAELARLQSRLDKLGR---DLEMIRDAVEK--LEVSRRLKEIESARREAE 361 Query: 309 TGLSESAASVEEITRN-------IGSFREMVEHLERAI------DVTGGAI-SSIVGRIE 354 L E+ +S++E R + R +V ++ R + D+ G S++ R++ Sbjct: 362 NRLLEARSSIKEEQRRYTLLDYRVTRGRSIVTNIRRVLSECRSKDLCGSEKPESVLERLD 421 Query: 355 EIHQDIQRQXXXXXXXXXXXXXXXXXXQQASSLARE-----------------RREGL-- 395 + D++ + QA S+ E R E + Sbjct: 422 AVINDLESKARALDQEASALEAEARRLVQALSMLEESGGSARCPVCGAELPPGRAEAIAR 481 Query: 396 --QHLMELIRENGEKIAGTQEVISTVSREITNVQEIIEII----DSIAEQTNILSMNAAI 449 +H E +R+ ++ A E + + + + IE++ + + E L Sbjct: 482 HYRHEAERLRKAAKEKAAEAEKARAEASRLQDKRRRIELLLSRLNQLEEGLRELGFQTPE 541 Query: 450 ESAHAGEAGKGFAVVAEEIRKLAESTEQHAGGITRALKGMTEQVTKALQTSNESAESFEH 509 + A A + + EE+RKL S E+ ++R + E T+AL+ E Sbjct: 542 DLAKAEQKLRMLRERLEELRKLENSLEEKVRNLSREEVALREAKTRALEVLQRLGIKEEE 601 Query: 510 IREEMKKFTYSLEEI-ASIMTQLSTASTQI-LEHIHTITRITGKIKGESDEIAGRISEIH 567 RE++K + +++ ++++ +T++ + ++ + K + + + +S I Sbjct: 602 AREKLKTLSSESKKLERMLVSKAEDLATRLGITAYRSLDDLLEKAREALEGVDKELSAIE 661 Query: 568 QAAESTQSTSLMVKQSXXXXXXXXXXXSKAMHEVDSLAQEMKLRMDELKERVHEFELEE 626 + E + +K+ K + E++ A+E KLR + ++ E L+E Sbjct: 662 RRLEEAR----RLKEEAAKLKWEAEQVMKRLEELE--AEEKKLRKEVSRKSEIEARLKE 714 >gi|14601261|ref|NP_147796.1| surface layer protein [Aeropyrum pernix K1] Length = 533 Score = 42.4 bits (98), Expect = 3e-05 Identities = 56/314 (17%), Positives = 118/314 (37%), Gaps = 31/314 (9%) Query: 264 TLGGRRDELGEIALHTSQVMDVLRSFLLSVQQAAAEVEALKNALATGLSESAASVEEITR 323 T+GG R+ E+A S + L L V+QA ++ ++L + + +VE++T Sbjct: 223 TIGGAREIAEEVA---SAYVAPLEERLSLVEQAVEDLGLALDSLEERVGDLEFAVEDLTL 279 Query: 324 NIGSFREMVEHLERAIDVTGGAISSIVGRIEEIHQDIQRQXXXXXXXXXXXXXXXXXXQQ 383 + S V LE + G + ++ G +E++ + QQ Sbjct: 280 QLSSLDSRVGALEDRVADIEGRLEAVEGSLEDLSGAVD-----------------AMSQQ 322 Query: 384 ASSLARERREGLQHLMELIRENGEKIAGTQEVISTVSREITNVQEIIEIIDSIAEQTNIL 443 +LA E L+ L + + ++ ++ +S +I + +DS+ + L Sbjct: 323 LQALA----EDLESLSSRVEDLEARVGSVEDRLSQAEEDI---DSLTTSLDSLRTELEDL 375 Query: 444 SMNAAIESAHAGEAGKGFAVVAEEIRKLAESTEQHAGGITRALKGMTEQVTKALQTSNES 503 S A A + VA +++L +Q +L+ +TE + Sbjct: 376 STRLAEAQASLEDLNTRLDQVASTLQQL----QQRLATAEESLQALTEDLASLQAEVETL 431 Query: 504 AESFEHIREEMKKFTYSLEEIASIMTQLSTASTQILEHIHTITRITGKIKGESDEIAGRI 563 +S I + + +++ + + L Q E + + E+ ++ Sbjct: 432 QQSIVEIDRRLGQLRSTVDAVRLEVESLGEKLVQAEEKNQRQDASIEDFQSQIQELRTQL 491 Query: 564 SEIHQAAESTQSTS 577 E + A+ T ST+ Sbjct: 492 DEKTREAQQTASTA 505 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.128 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 450,769 Number of Sequences: 1700 Number of extensions: 15709 Number of successful extensions: 99 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 89 Number of HSP's gapped (non-prelim): 9 length of query: 630 length of database: 492,079 effective HSP length: 82 effective length of query: 548 effective length of database: 352,679 effective search space: 193268092 effective search space used: 193268092 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719281|ref|YP_003874813.1| hypothetical protein STHERM_c16000 [Spirochaeta thermophila DSM 6192] (97 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.137 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,210 Number of Sequences: 1700 Number of extensions: 2639 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 97 length of database: 492,079 effective HSP length: 63 effective length of query: 34 effective length of database: 384,979 effective search space: 13089286 effective search space used: 13089286 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719282|ref|YP_003874814.1| hypothetical protein STHERM_c16010 [Spirochaeta thermophila DSM 6192] (198 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.143 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 188,774 Number of Sequences: 1700 Number of extensions: 7294 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 198 length of database: 492,079 effective HSP length: 72 effective length of query: 126 effective length of database: 369,679 effective search space: 46579554 effective search space used: 46579554 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719283|ref|YP_003874815.1| thermostable carboxypeptidase 1 [Spirochaeta thermophila DSM 6192] (506 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431585|ref|NP_148158.2| carboxypeptidase [Aeropyrum pernix... 389 e-109 >gi|118431585|ref|NP_148158.2| carboxypeptidase [Aeropyrum pernix K1] Length = 500 Score = 389 bits (998), Expect = e-109 Identities = 218/498 (43%), Positives = 279/498 (56%), Gaps = 9/498 (1%) Query: 4 DDAVRRLKDYWREVVLLSHVQALLGWDQETYMPEGAVEERAAQQALLQGLIHRRKTAPXX 63 + VR L + +R V +SH +L+GWD ETYMP+G V ERA +A L + RR+ Sbjct: 7 NSVVRELVEAYRPVWSVSHALSLMGWDSETYMPKGGVGERALARADL--FVLRRRLL--- 61 Query: 64 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYREWRRATKLPEDLVRRFAETTSRAQVVW 123 RE R A LPE+ V FA+ A W Sbjct: 62 --LREELLRLLERAESQEGLNEYEAGVVRVLKREVRIARSLPEEFVFEFAKLREEATHAW 119 Query: 124 QRARAEDDFGMFAPHLEEILSLVREIAERLGYEEHPYDALLDEYEPYMKASQVRAVFDQL 183 + AR DDFG+F P+LE I+ R +A+ LG+E HPY+ALLD +E + V +FD + Sbjct: 120 RTARERDDFGLFKPYLERIVEYARRMADYLGWEGHPYNALLDLHEEGLTVGDVDRIFDSI 179 Query: 184 EGPLVRLLEEIMEAGEVDDSPLHRHFPREG--QEQVSRRILTDMGFDWKRGRLDVSAHPF 241 L R L+ ++ G S E E V+R +L +GF W RGRLDVS HPF Sbjct: 180 VPTLRRALDRVLSTGSYPRSHSLESVEYEQGVMEAVNREVLDLLGFPWDRGRLDVSPHPF 239 Query: 242 TTTLAEGDIRITTRYMEDFLPSSLFGSIHEGGHALYEQGIAEDLAGTILADGTSLGIHES 301 T ++ GD+RITTRY +LF IHE GHALYE I E L + LA+G SLG+HES Sbjct: 240 TISMGIGDVRITTRYEGRDFRHTLFAVIHEFGHALYELQIDERLKASPLAEGASLGVHES 299 Query: 302 QSRFWENVVGRSRAFWQKYFPLLKETFSSLSDVEFERFYRAINKVKPSHIRVEADEVTYN 361 QSRFWENVV RSR+F P+L++ L D + Y N V+P IRVEADE+TYN Sbjct: 300 QSRFWENVVARSRSFIPLVTPILRKRLPFLKDYSDDDVYLYFNIVRPGLIRVEADELTYN 359 Query: 362 LHILLRFRLELALVEGRLAVKDLPEAWREESRRLLGIVPERDAEGVLQDIHWSFGGIGYF 421 HI LR+ LE L+EG + V DLPE W LLG+ P+ +GVLQDIHWS G IGYF Sbjct: 360 FHIYLRYTLEKGLIEGSIKVDDLPELWNSMMEDLLGVRPKSYRDGVLQDIHWSHGSIGYF 419 Query: 422 PTYTLGNLYSAQFARAMERDLGDLSSLIAEARFDAILGWLREKIHRHGRTYPAHELCLRA 481 PTYTLG + SAQ A++ LG L L+ D + +LRE IHR+G TY EL R Sbjct: 420 PTYTLGTVLSAQIKAAIDGSLGGLYRLVENGELDRVRTFLRENIHRYGSTYAPKELVERG 479 Query: 482 TGETLNPDYFLSYLRGKY 499 GE LNP+Y+ Y+ K+ Sbjct: 480 LGEPLNPEYYNQYITEKF 497 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 515,503 Number of Sequences: 1700 Number of extensions: 23303 Number of successful extensions: 76 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 2 length of query: 506 length of database: 492,079 effective HSP length: 81 effective length of query: 425 effective length of database: 354,379 effective search space: 150611075 effective search space used: 150611075 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719284|ref|YP_003874816.1| threonyl-tRNA synthetase [Spirochaeta thermophila DSM 6192] (578 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431208|ref|NP_147510.2| threonyl-tRNA synthetase [Aeropyru... 193 8e-51 gi|118431143|ref|NP_147398.2| histidyl-tRNA synthetase [Aeropyru... 42 3e-05 >gi|118431208|ref|NP_147510.2| threonyl-tRNA synthetase [Aeropyrum pernix K1] Length = 471 Score = 193 bits (491), Expect = 8e-51 Identities = 128/381 (33%), Positives = 192/381 (50%), Gaps = 30/381 (7%) Query: 198 GPGLIYWHPKGARIRLEIENFWREQHLARGYEVLYTPHIGKAWLWETSGHLSFYKENMYA 257 G G+ + G IR + + H RGY V+ TP I L++ SGH+ FY+ NMY Sbjct: 38 GAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYL 97 Query: 258 PMEVDKSDYYIKPMNCPFHIMIYKTRLRSYRE---LPLRWAELGTVYRYERSGVLHGLLR 314 +++ ++ +KPMNCP+HI+++ + +R LP + E G V+RYE SG ++GLLR Sbjct: 98 -FDIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLR 156 Query: 315 VRGFTQDDAHIFCTPEQIED---EILETLRFSLFMWETFGFSD----VKAYLSTRP---E 364 VRGFTQDDAHI ++ D ++ E ++ L G S V+ +S + + Sbjct: 157 VRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGK 216 Query: 365 KSVGEPERWEQATGSLRKAIEREGLDYEVD----EGGGAFYGPKIDIKV---RDALGREW 417 + +G E WE A +LR+A R Y +D EG AFYGPK+D + + +EW Sbjct: 217 EFMGSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIMMVEESGVSKEW 276 Query: 418 QTSTIQFDFNLPERFDI-TYVDADGREKRPYMVHRALLGSLERFFGILIEHYGG------ 470 Q TIQFDFNLP RF + V + + Y++HRALLGS+ERF G+ +EH G Sbjct: 277 QMGTIQFDFNLPRRFRLYDVVREEFGIEEVYIIHRALLGSIERFLGVYLEHRRGRMPFTL 336 Query: 471 AFXXXXXXXXXXXXXXXXXFAGYAQEVVRALREAGVR-AEADLSADRMNAKIRKAQQEKI 529 A A + + L + G R A S +++ +R + Sbjct: 337 APIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSDVRHIESTAK 396 Query: 530 PYA-VIVGQREQEGRTVSVRV 549 P V +G +E + + VRV Sbjct: 397 PAVNVFIGAKEVREKVLDVRV 417 >gi|118431143|ref|NP_147398.2| histidyl-tRNA synthetase [Aeropyrum pernix K1] Length = 435 Score = 42.4 bits (98), Expect = 3e-05 Identities = 27/77 (35%), Positives = 36/77 (46%) Query: 493 YAQEVVRALREAGVRAEADLSADRMNAKIRKAQQEKIPYAVIVGQREQEGRTVSVRVRGG 552 YA E R LR G+ DLS + RKA + IP VG +E EG +++ Sbjct: 355 YAWEAARILRRGGLNVRIDLSRASGQVQRRKASRLGIPVLAFVGAKEAEGGFLTLYSAAK 414 Query: 553 EQRNGVALGAFVEDVAR 569 +R V LG V+ V R Sbjct: 415 GERVAVPLGEAVKAVER 431 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 620,022 Number of Sequences: 1700 Number of extensions: 29472 Number of successful extensions: 124 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117 Number of HSP's gapped (non-prelim): 2 length of query: 578 length of database: 492,079 effective HSP length: 82 effective length of query: 496 effective length of database: 352,679 effective search space: 174928784 effective search space used: 174928784 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719285|ref|YP_003874817.1| 3-hydroxyisobutyrate dehydrogenase [Spirochaeta thermophila DSM 6192] (283 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431181|ref|NP_147470.2| dehydrogenase [Aeropyrum pernix K1] 69 1e-13 >gi|118431181|ref|NP_147470.2| dehydrogenase [Aeropyrum pernix K1] Length = 291 Score = 68.9 bits (167), Expect = 1e-13 Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 13/180 (7%) Query: 2 KIGFIGLGSLGSAIAGRLASCGHELLVWNRTREKAE----ASGFPVADSPADLVSRSEVV 57 ++ +G G +GS A RLAS G+ ++VW+R+ EKAE +G A S D ++ SE Sbjct: 4 RVAVVGAGRMGSGAARRLASRGYRVVVWSRSWEKAERLAREAGLEAARSLVDALAESEAA 63 Query: 58 CLCLFDSTAVRDVLSGEDGICSVDLS-GKVVVDFTTNHYKEVTSFYDLCRARGGEYLESP 116 + D A+ +V+S V S G + V+ T + S G +Y+E+P Sbjct: 64 IAFVSDDDALLNVVS------QVRRSDGLIFVNSATTTPRASVSAARYLEGLGVQYVEAP 117 Query: 117 VLGSGVPASKGELTVVVSGKEDAFKRVEAPLLSCIGRHIFYLGEPGLASKMKVV-NNLTL 175 V+G +GE V+ + A PLLS +G + G+A+ MK+ NNL L Sbjct: 118 VIGGPGALERGEAIVLAAAPRSALAPA-VPLLSELGELVKVGESYGMAAAMKLAFNNLLL 176 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 260,477 Number of Sequences: 1700 Number of extensions: 10832 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 1 length of query: 283 length of database: 492,079 effective HSP length: 76 effective length of query: 207 effective length of database: 362,879 effective search space: 75115953 effective search space used: 75115953 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719286|ref|YP_003874818.1| hypothetical protein STHERM_c16050 [Spirochaeta thermophila DSM 6192] (477 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431578|ref|NP_148148.2| hypothetical protein APE_1758.1 [A... 427 e-121 >gi|118431578|ref|NP_148148.2| hypothetical protein APE_1758.1 [Aeropyrum pernix K1] Length = 481 Score = 427 bits (1099), Expect = e-121 Identities = 230/477 (48%), Positives = 301/477 (63%), Gaps = 5/477 (1%) Query: 5 RESTYRYVIPPHED--MRVPAVVYTTEDLLPLLTKDEALRQLTNVARLPGVVRCAVGMPD 62 R Y ++IP MRVPA+VY + L+ + +D+ L Q NVA L G+ + ++ MPD Sbjct: 6 RIDKYVWMIPQDAKPCMRVPAIVYADDFLIEKMKQDKTLLQAANVACLQGIQKYSIVMPD 65 Query: 63 MHQGYAFPIGTVAAFDIEE--GVVSPGGVGFDINCGVRVIRTSLTAPEVKGVLEELGNIL 120 HQGY FPIG VAA DIEE GV+SPGGVG+DINCGVRV+RT+LT EV+ L++L + L Sbjct: 66 GHQGYGFPIGGVAAMDIEEENGVISPGGVGYDINCGVRVLRTNLTEEEVRPKLKDLVDTL 125 Query: 121 FATVPAGLGSRGLEKFSHKEARRAMRKGLGWALEKGMAMXXXXXXXXXXGCLKDADPQLV 180 + VP+GLGS G K S +E + + G+ WA+ +G G AD V Sbjct: 126 YHNVPSGLGSTGKVKLSVQELDKVLDTGVEWAISRGYGWPEDKEHIEERGSWSLADSSKV 185 Query: 181 SDEALDRGREEFGTLGSGNHFLEIDVVEKVFDPKKAQALGLFEGQVVIWIHTGSRGLGHQ 240 S A RG E+ GTLGSGNHFLE+ VVE+VFD + A+A GLFEGQVV+ IHTGSRGLGHQ Sbjct: 186 SQTAKRRGAEQLGTLGSGNHFLEVQVVERVFDERIAKAYGLFEGQVVVMIHTGSRGLGHQ 245 Query: 241 IAMDYMEKMRPRMESYGIPLFERDFVSLPVKAPQSQXXXXXXXXXXXXXWVNRQLITHRV 300 +A DY+ M M YG +R+ S+P +P++Q W NRQ+ITH Sbjct: 246 VASDYLMIMERAMRKYGTIPPDRELASIPYNSPEAQNYVRAMAAAANFAWTNRQMITHWT 305 Query: 301 REAFSRVFRRPGDELGLFLLYDVAHNIAKYEVYKVDGAERMLLVHRKGATRAFPAGHPAL 360 RE+F +VF + D+LGL ++YDVAHNIAK E Y+VDG + L++HRKGATRAFP GHP + Sbjct: 306 RESFKKVFHQDPDKLGLEIVYDVAHNIAKIEEYEVDGKRKKLVIHRKGATRAFPPGHPEI 365 Query: 361 RGIFREVGQPILLPGDMKRGSYILLGTERALEESFGSVAHGAGRQMSRHAAKKAFGFKEM 420 + +VGQP+L+PG M GSYIL G + +S+ + HGAGR MSR AK+ F ++ Sbjct: 366 PKDYMDVGQPVLIPGSMGTGSYILAGVPEGV-KSWYTAPHGAGRWMSRSRAKRTKTFNQV 424 Query: 421 QEDLARDEIRLYAVDRRRAQEEAPGAYKDVDTVVKPLVGEGLAVPVVRTRPLLVIKG 477 E+LA I + A +R EE P AYKDVD V + G+ V R RP+ V KG Sbjct: 425 LEELAAKGIYIRASNRATVVEEMPEAYKDVDRVAQVAHAVGIGRLVARMRPIGVTKG 481 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 508,800 Number of Sequences: 1700 Number of extensions: 23948 Number of successful extensions: 83 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80 Number of HSP's gapped (non-prelim): 1 length of query: 477 length of database: 492,079 effective HSP length: 80 effective length of query: 397 effective length of database: 356,079 effective search space: 141363363 effective search space used: 141363363 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719287|ref|YP_003874819.1| dioxygenase [Spirochaeta thermophila DSM 6192] (299 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601616|ref|NP_148156.1| hypothetical protein APE_1771 [Aero... 61 3e-11 >gi|14601616|ref|NP_148156.1| hypothetical protein APE_1771 [Aeropyrum pernix K1] Length = 281 Score = 61.2 bits (147), Expect = 3e-11 Identities = 57/203 (28%), Positives = 100/203 (49%), Gaps = 23/203 (11%) Query: 25 MKVRERMLPPGWYPDEKEEVLEEIA-------GWKRLERR---LSTPAVACIVPHAGWYF 74 MK+R +YP +EE+++ I G RL +R A+A I PHAG+ + Sbjct: 1 MKIRNPAHAGTFYPATREELVKSIESSFTHPLGPGRLPQRGGGSGEQAIAYIPPHAGYMY 60 Query: 75 SGELAFMGI--RSLDPEAEVVAVVGGHLSERSPLLYMPEDGL-STPLGDLPVE----RPL 127 SG +A SL + +VV ++G + + + ++G+ TPLG++ V+ R + Sbjct: 61 SGPIAAHVYYDMSLGRKPDVVVLLGPNHTGLGLAASLWDEGVWRTPLGEVEVDSEAGRLV 120 Query: 128 VETLREHVPTEPDVYPDNTVEIQLPLVKYC----FPHASVVGLRCPPLLEVAERTARVLY 183 VE P + ++++E+QLP ++Y F +V L L+++ R AR + Sbjct: 121 VEYSGIVAPDDEGHIYEHSLEVQLPFLQYLYGGDFRIVPIVVLH--QTLDISIRIARAYH 178 Query: 184 DYGKETGKKPVVIGSTDLTHYGP 206 +E G V++ ++DL HY P Sbjct: 179 RLREENGVNAVLVATSDLNHYEP 201 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 316,179 Number of Sequences: 1700 Number of extensions: 14697 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 1 length of query: 299 length of database: 492,079 effective HSP length: 76 effective length of query: 223 effective length of database: 362,879 effective search space: 80922017 effective search space used: 80922017 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719288|ref|YP_003874820.1| hypothetical protein STHERM_c16060 [Spirochaeta thermophila DSM 6192] (395 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 364,230 Number of Sequences: 1700 Number of extensions: 15368 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 395 length of database: 492,079 effective HSP length: 79 effective length of query: 316 effective length of database: 357,779 effective search space: 113058164 effective search space used: 113058164 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719289|ref|YP_003874821.1| hypothetical protein STHERM_c16080 [Spirochaeta thermophila DSM 6192] (291 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 209,115 Number of Sequences: 1700 Number of extensions: 7794 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 291 length of database: 492,079 effective HSP length: 76 effective length of query: 215 effective length of database: 362,879 effective search space: 78018985 effective search space used: 78018985 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719290|ref|YP_003874822.1| hypothetical protein STHERM_c16090 [Spirochaeta thermophila DSM 6192] (545 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 503,205 Number of Sequences: 1700 Number of extensions: 23340 Number of successful extensions: 84 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84 Number of HSP's gapped (non-prelim): 0 length of query: 545 length of database: 492,079 effective HSP length: 81 effective length of query: 464 effective length of database: 354,379 effective search space: 164431856 effective search space used: 164431856 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719291|ref|YP_003874823.1| transporter [Spirochaeta thermophila DSM 6192] (307 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 118 2e-28 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 101 3e-23 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 96 1e-21 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 94 4e-21 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 93 7e-21 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 93 7e-21 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 93 7e-21 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 91 3e-20 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 87 4e-19 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 87 7e-19 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 80 5e-17 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 78 3e-16 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 78 3e-16 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 75 3e-15 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 73 1e-14 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 72 1e-14 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 71 4e-14 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 69 2e-13 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 67 7e-13 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 65 2e-12 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 65 3e-12 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 62 2e-11 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 60 5e-11 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 60 5e-11 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 60 5e-11 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 60 7e-11 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 60 9e-11 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 59 2e-10 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 56 1e-09 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 56 1e-09 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 55 2e-09 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 54 5e-09 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 53 1e-08 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 53 1e-08 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 52 1e-08 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 52 2e-08 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 50 9e-08 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 48 4e-07 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 47 8e-07 gi|118431756|ref|YP_874928.1| hypothetical protein APE_2154b [Ae... 42 3e-05 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 118 bits (295), Expect = 2e-28 Identities = 79/215 (36%), Positives = 110/215 (51%), Gaps = 6/215 (2%) Query: 2 IEVRGVRKAYGEVEALCGVGFVCG--ERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVW 59 +E RG+RK +G A+ GV F G ER C+ +GPNG+GK+TLLR+++G L P G V Sbjct: 5 VEARGLRKRFGGRTAVAGVSFSVGDGERACI--MGPNGSGKTTLLRMVSGVLRPSGGSVR 62 Query: 60 VGGLRMDEDRVR-AQMMVGFMPEECVFPAEWRVGELLVWVASCXXXX-XXXXXXXXXXXX 117 V G + D R A+ ++GF P++ E + V Sbjct: 63 VCGYDVWGDGWREARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREARRVLE 122 Query: 118 XXXXXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLREL 177 ++ LS G R+ +G+A AL P VVVLDEPG+G D A+ L A LR+ Sbjct: 123 MLGFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASLRKA 182 Query: 178 SQERLVVLSSHRLSEVERVCDRVLLLHRGRIVGEG 212 + R V+ SSH E E DRVL++HRGR+ G Sbjct: 183 FKGRTVLFSSHDPQEAEAESDRVLIMHRGRLAAWG 217 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 101 bits (251), Expect = 3e-23 Identities = 76/215 (35%), Positives = 103/215 (47%), Gaps = 14/215 (6%) Query: 1 MIEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWV 60 +IEV G+ K YG VEAL GV F G +GPNGAGK+T +RV+ G P G V Sbjct: 4 VIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARV 63 Query: 61 GGLRM-DEDRVRAQMMVGFMPEECVFPAEWRVGELLVW----VASCXXXXXXXXXXXXXX 115 G+ + + + VG++P E F G +L + V C Sbjct: 64 FGVELYNPGASGVRRRVGYVPGEFEFYGGVSGGRMLDYWCRLVGGCSRGVVRELLEAFPL 123 Query: 116 XXXXXXXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLR 175 +G SRG +Q + L A P +VV+DEP TG DP A+ + +R Sbjct: 124 PLERA--------VGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDFVR 175 Query: 176 ELSQERLVV-LSSHRLSEVERVCDRVLLLHRGRIV 209 ++E + V SSH LSEV+RV DRV LL G +V Sbjct: 176 SKAREGVTVFFSSHVLSEVQRVADRVGLLRSGVLV 210 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 95.5 bits (236), Expect = 1e-21 Identities = 64/205 (31%), Positives = 105/205 (51%), Gaps = 9/205 (4%) Query: 14 VEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWVGGLRM--DEDRVR 71 + AL GV G L+GPNGAGK+TL+++++ L+PD G V G + + + VR Sbjct: 26 IRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANNVR 85 Query: 72 AQMMVGFMPEECVFPAEWRV-GELLVWVASCXXXX--XXXXXXXXXXXXXXXXXXXXXXM 128 +++ V E ++ WR+ G +W S Sbjct: 86 SRIGVVLGGERALY---WRLSGWDNLWFFSQLYGIPPREAKRRVKELLEIVGLEEWAHVR 142 Query: 129 LGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLRELSQE-RLVVLSS 187 + S+G +QR+ +A L+ P V++LDEP G DP A +R+++R + +E R V+L++ Sbjct: 143 VENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVLLTT 202 Query: 188 HRLSEVERVCDRVLLLHRGRIVGEG 212 H + E E + DRV ++ +GRIV EG Sbjct: 203 HYMVEAEELSDRVAIISKGRIVAEG 227 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 94.0 bits (232), Expect = 4e-21 Identities = 72/215 (33%), Positives = 100/215 (46%), Gaps = 6/215 (2%) Query: 1 MIEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWV 60 ++E RGV K Y L V G VGL+GPNGAGK+TL++V G D G V + Sbjct: 4 VLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLL 63 Query: 61 GGLRMDEDRVRAQMMVGFMPEECVFPAEWRVGELLVWVASCXXXXXXXXXXXXXXXXXXX 120 GL + RA+ VG + E P+ V E L S Sbjct: 64 NGLDPWRE-PRAREGVGVVFERPNLPSSMPVVEFL---ESAAAIIGSSPSRVDWAIRAAG 119 Query: 121 XXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLRELSQE 180 LS G +QR +A AL+G PR +V DEP + DP + + LL L++E Sbjct: 120 LEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLNRE 179 Query: 181 R--LVVLSSHRLSEVERVCDRVLLLHRGRIVGEGS 213 +++SSH + E+ RV R+ +L GR+ EGS Sbjct: 180 HGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGS 214 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 93.2 bits (230), Expect = 7e-21 Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 2/215 (0%) Query: 1 MIEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWV 60 M+ + K YG A+ GV F L+GPNGAGK+T +++++ L P GE W+ Sbjct: 6 MVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWI 65 Query: 61 GGLRMDEDRVRAQMMVGFMPEECVFPAEWRVGE-LLVWVASCXXXXXXXXXXXXXXXXXX 119 G + + + ++G +P++ E + + + Sbjct: 66 AGYSIVREPGNVRRVIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEARERTREVLDYL 125 Query: 120 XXXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLRELSQ 179 + S G R+++ +A +LV P+V+ LDEP G D ++ L + +L + Sbjct: 126 DLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLKR 185 Query: 180 ERL-VVLSSHRLSEVERVCDRVLLLHRGRIVGEGS 213 + ++L++H + E E + DRV ++ RGRIV EG+ Sbjct: 186 SAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGT 220 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 93.2 bits (230), Expect = 7e-21 Identities = 72/229 (31%), Positives = 107/229 (46%), Gaps = 20/229 (8%) Query: 1 MIEVRGVRKAYGE-------VEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVP 53 MIE RG+ K + VEAL GV F E +GPNGAGK+T +R+++ L P Sbjct: 5 MIEARGLVKRFVSGRIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDP 64 Query: 54 DEGEVWVGGLRMDEDRVRAQMMVGFMPE-ECVFPAEWRVGELLVWVASCXXXXXXXXXXX 112 D GE V G + ++R + +G M E F + E L + Sbjct: 65 DGGEARVAGFDVVKERWEVRKRIGVMLSVERGFYWKLTGRENLYYFGRIYGIPQGELKSR 124 Query: 113 XXXXXXXXXXXXXXXMLGG-------LSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPP 165 LGG +S G + R+GLA L+ P V++LDEP G DP Sbjct: 125 IKEVLDLVGLTD----LGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPA 180 Query: 166 AQAGLRALLRELSQE-RLVVLSSHRLSEVERVCDRVLLLHRGRIVGEGS 213 + +R ++R L+ E R + +++H + E E + DRV ++ GRI EG+ Sbjct: 181 SARTIRGVIRSLASEGRTIFITTHNMVEAEMISDRVGIIIGGRIAMEGT 229 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 93.2 bits (230), Expect = 7e-21 Identities = 66/214 (30%), Positives = 94/214 (43%), Gaps = 3/214 (1%) Query: 2 IEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWVG 61 +E GV K G L V G++GPNGAGK+TL R + G D G V + Sbjct: 9 VEAEGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALL 68 Query: 62 GLRMDEDRVRAQMMVGFMPEECVFPAEWRVGELLVWVASCXXXXXXXXXXXXXXXXXXXX 121 G ++ V ++PE+ P G + + + Sbjct: 69 GEPVERAGGSLFRRVAYLPEDGE-PYRNMTGHEFLRLYASIYGVEDLEGYLEEASRLSGL 127 Query: 122 XXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLRELSQER 181 + S+G R+R+ +AA L P + VLDEP G DP G+R LL+E S+ Sbjct: 128 GGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERH 187 Query: 182 --LVVLSSHRLSEVERVCDRVLLLHRGRIVGEGS 213 V+LSSH + EVE VC + ++ GRIV GS Sbjct: 188 GVTVLLSSHNMYEVESVCSEITMISSGRIVYSGS 221 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 91.3 bits (225), Expect = 3e-20 Identities = 62/190 (32%), Positives = 94/190 (49%), Gaps = 15/190 (7%) Query: 32 LIGPNGAGKSTLLRVITGALVPDEGEV-------WVGGLRMDEDRVRAQMMVGFMPEEC- 83 L G NGAGK+T LRV+ G L D GE W GG +RV+ + VG++PE+ Sbjct: 45 LAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPWGGGF----ERVKGE--VGYLPEDAS 98 Query: 84 VFPAEWRVGELLVWVASCXXXXXXXXXXXXXXXXXXXXXXXXXXMLGGLSRGFRQRVGLA 143 V+ + +L + GG S+G ++R+ L Sbjct: 99 VYERLTGMENILFYARLYSGWRDVEELVENAVFYSGLSREDLARRAGGYSKGMKRRLLLG 158 Query: 144 AALVGGPRVVVLDEPGTGFDPPAQAGLRALLRELSQE-RLVVLSSHRLSEVERVCDRVLL 202 L+ PR+VVLDEP +G DP A ++ +LR LS+E R +++++H L+ E + DRV + Sbjct: 159 ITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSREGRAILVTTHDLALAEEIADRVTI 218 Query: 203 LHRGRIVGEG 212 +H G V G Sbjct: 219 IHGGSTVASG 228 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 87.4 bits (215), Expect = 4e-19 Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 22/214 (10%) Query: 2 IEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWVG 61 + + K +G+ A V F G +G++GPNGAGK+TLL+ I G + P GE+ V Sbjct: 5 VNASALSKRFGQRYAYRNVEFTFTS-GILGVLGPNGAGKTTLLKTILGLVKPSAGEILVE 63 Query: 62 GLRMDEDRVRAQM-MVGFMPEECVFPAEWRVGELLVWVASCXXXXXXXXXXXXXXXXXXX 120 G+ + +G++PE V P +W C Sbjct: 64 GVNPRSPGFEKLLPRIGYVPELPVVP---------LWTTPCILLETLARLEGYTSVEARV 114 Query: 121 XXXXXXXM----------LGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGL 170 + +G LS+G R+RV +A A +G ++VLDEP +G DP + Sbjct: 115 RAREALEVVGLAGECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRV 174 Query: 171 RALLRELSQE-RLVVLSSHRLSEVERVCDRVLLL 203 R LLR +++E V++SSH L E+E + VL+L Sbjct: 175 RELLRTVAREGATVIVSSHILRELEDIATHVLVL 208 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 86.7 bits (213), Expect = 7e-19 Identities = 67/216 (31%), Positives = 102/216 (47%), Gaps = 13/216 (6%) Query: 2 IEVRGVRKAYGE-VEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWV 60 + +RG+ K Y + V+AL V F L+G NGAGK+TL+R++ G + P GE++V Sbjct: 13 VAMRGIVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYV 72 Query: 61 GGLRMDE----DRVR---AQMMVGFMPEECVFPAEWRVGELLVWVASCXXXXXXXXXXXX 113 G ++ D +R A + F E + E + ++++S Sbjct: 73 WGRKVSWRGPWDAIRNGIAMVYQQFRLVESMTVEE----NIAIYLSSLGLGRSEARRRTL 128 Query: 114 XXXXXXXXXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRAL 173 + L G RQRV + AL GG +V++LDEP + P L + Sbjct: 129 ETAERLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFST 188 Query: 174 LRELSQERL-VVLSSHRLSEVERVCDRVLLLHRGRI 208 LR L + VV +H+L EV RV DRV +L RGR+ Sbjct: 189 LRLLKDMGVSVVYITHKLGEVVRVADRVTVLRRGRV 224 Score = 48.5 bits (114), Expect = 2e-07 Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 9/219 (4%) Query: 1 MIEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWV 60 ++ VRGV VE + V E VG+ G G G+ L+ I G P G + V Sbjct: 262 LLSVRGVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEV 321 Query: 61 GGLRMDEDRVRAQMMVGFMPEEC--VFPAEWRVGE---LLVWVASCXXXXXXXXXXXXXX 115 G R++ + G++ + V ++ V E L + AS Sbjct: 322 QGRRIEGSLDFYRAGGGYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRRSRLEDLFR 381 Query: 116 XXXXXXXXXXXXM---LGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRA 172 +G LS G +Q+V + + ++ G +++V P G D + +R Sbjct: 382 RLVERFRLVARSPWTPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTSFVRN 441 Query: 173 LLRELSQERL-VVLSSHRLSEVERVCDRVLLLHRGRIVG 210 LL EL+++ ++L S L E+ + DR+ ++ GR+ G Sbjct: 442 LLSELARQGAGILLVSTDLDEILELSDRIYVMSGGRVTG 480 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 80.5 bits (197), Expect = 5e-17 Identities = 65/220 (29%), Positives = 101/220 (45%), Gaps = 9/220 (4%) Query: 2 IEVR--GVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVW 59 +EVR V +YGEVEAL GV F E ++GP+G GK+T+L+VI G L P G V+ Sbjct: 4 VEVRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVF 63 Query: 60 VGGLRMDEDRVRAQMMVGFMPEECVFPAEWRVGELLVWVASCXXXXXXXXXXXXXXXXXX 119 GG+ + VGF+ ++ V + + + Sbjct: 64 FGGVDY-TGLPPERRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWALET 122 Query: 120 XXXXXXXXMLG----GLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLR 175 +G GLS G +QRV LA A+ P V++LDEP + D + L A L+ Sbjct: 123 VGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELK 182 Query: 176 ELSQE--RLVVLSSHRLSEVERVCDRVLLLHRGRIVGEGS 213 L ++ ++ +H E + D ++++ GRIV G+ Sbjct: 183 RLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGT 222 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 77.8 bits (190), Expect = 3e-16 Identities = 60/232 (25%), Positives = 94/232 (40%), Gaps = 20/232 (8%) Query: 1 MIEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWV 60 M+ + +G V AL V +G+IGPNGAGK++LL VITG P G V+ Sbjct: 1 MLWTENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYF 60 Query: 61 GGLRMDEDRVRAQMMVGF---------------MPEECVFPAEWRVGELL---VWVASCX 102 G + + ++ +G + V W G +L +W Sbjct: 61 KGRDITGLKPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAK 120 Query: 103 XXXXXXXXXXXXXXXXXXXXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGF 162 +G L G +++V LA AL P VV++DEP G Sbjct: 121 RWEVEARERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGL 180 Query: 163 DPPAQAGLRALLRELSQ--ERLVVLSSHRLSEVERVCDRVLLLHRGRIVGEG 212 + + + E S+ +VL H + V VCDRV+++ G+++ EG Sbjct: 181 SKEEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEG 232 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 77.8 bits (190), Expect = 3e-16 Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 2/209 (0%) Query: 2 IEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWVG 61 + V + AY L GV G V +IGPNGAGK+T L+ I G + P G V++ Sbjct: 3 VRVEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLD 62 Query: 62 GLRMDEDRVRAQMMVGFMPEECVFP--AEWRVGELLVWVASCXXXXXXXXXXXXXXXXXX 119 G G++P+ P + V E + Sbjct: 63 GFEATGRPEMVGRYAGYVPQNPSAPKLSPMTVREFVETSLRLRGVTRARERAVEVLHTLG 122 Query: 120 XXXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLRELSQ 179 L LS G QRV +A A+ P+++V+DEP DP + + ++ L++ Sbjct: 123 IRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAGLAR 182 Query: 180 ERLVVLSSHRLSEVERVCDRVLLLHRGRI 208 ERLV+++SH S + D +++++R I Sbjct: 183 ERLVLMTSHDPSLLLGHTDIIVVINRDLI 211 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 74.7 bits (182), Expect = 3e-15 Identities = 63/220 (28%), Positives = 99/220 (45%), Gaps = 10/220 (4%) Query: 1 MIEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWV 60 +++VR V K +G +EAL GV F VGLIGPNGAGK+TL +I+G +PD G V Sbjct: 4 ILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIY 63 Query: 61 GGLRMD----EDRVRAQMMVGFMPEECVFPAE--WRVGELLVWVASCXXXXXXXXXXXXX 114 G+ + R RA + F + V P + ++V Sbjct: 64 KGVDITGWPAYRRSRAGIARTF---QIVRPLANLTVLNNVIVGALLRTNDIREARERAME 120 Query: 115 XXXXXXXXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALL 174 + L+ ++R+ LA AL P +++LDE G P L L Sbjct: 121 AIDMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTL 180 Query: 175 RELSQERL-VVLSSHRLSEVERVCDRVLLLHRGRIVGEGS 213 E+S+ + +++ H + V +RV++LH G + EG+ Sbjct: 181 LEISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGT 220 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 72.8 bits (177), Expect = 1e-14 Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 10/220 (4%) Query: 2 IEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWVG 61 I + GV K +G+V A+ V + L+GP+G GK+T LR+I G PDEG + + Sbjct: 4 IRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILID 63 Query: 62 G----LRMDEDRVRAQMMVGFM--PEECVFPAEWRVGELLVWVASCXXXXXXXXXXXXXX 115 G + +DR A + + P VF + L + Sbjct: 64 GEDVTFKDPKDRNVAMVFQNYALYPHMSVF--DNIAFTLHLRRKEMGLTKDDIRRRVIEV 121 Query: 116 XXXXXXXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLR 175 G LS G +QRV LA ALV P+V ++DEP + D + +RA L+ Sbjct: 122 AKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELK 181 Query: 176 ELSQERLV--VLSSHRLSEVERVCDRVLLLHRGRIVGEGS 213 +L ++ + V +H +E + DR+ ++++GR+V G+ Sbjct: 182 KLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGT 221 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 72.4 bits (176), Expect = 1e-14 Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 15/226 (6%) Query: 2 IEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGA--LVPD---EG 56 + V G+ + L G+ F ++GP+G+GKSTL+RVI L+P EG Sbjct: 6 VRVSGLNVWITDKHILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEG 65 Query: 57 EVWVGGLR-MDEDRVRAQMMVGFMPEEC-VFP-----AEWRVGELLVWVASCXXXXXXXX 109 EVW+ + M ED + G + +E FP +G L +A Sbjct: 66 EVWINNMNVMKEDPYNIRRYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEIV 125 Query: 110 XXXXXXXXX-XXXXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQA 168 LS G RQR+ LA AL PRV++LDEP DP + Sbjct: 126 EWALKMAHLWDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTV 185 Query: 169 GLRALLRELSQERL--VVLSSHRLSEVERVCDRVLLLHRGRIVGEG 212 + + E ++E + V++ +H + R+ D++L L+ GR++ G Sbjct: 186 KIEQSIVEYAKEEMATVIIVTHTPQQAARISDQILFLYEGRVIEYG 231 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 70.9 bits (172), Expect = 4e-14 Identities = 62/221 (28%), Positives = 97/221 (43%), Gaps = 11/221 (4%) Query: 1 MIEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGE-VW 59 ++EV+ + YGE +AL GV + V L+G NGAGK+T L I+G L P G +W Sbjct: 6 LLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIW 65 Query: 60 VG----GLRMDEDRVRAQMMVGFMPE-ECVFPAEWRVGELLVWVASCXXXXXXXXXXXXX 114 G GL + R + + +PE +FP L V ++ Sbjct: 66 QGRDITGLPAFK---RVEEGISHVPEGRGIFPRLTVYENLRVAASTRRAKEHFQDSLEQV 122 Query: 115 XXXXXXXXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALL 174 + G LS G +Q + +A AL+ P ++++DEP G P + L Sbjct: 123 YTIFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLA 182 Query: 175 RELSQER--LVVLSSHRLSEVERVCDRVLLLHRGRIVGEGS 213 L +E ++L + +V DR ++ GRIV EG+ Sbjct: 183 SRLREELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGA 223 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 68.6 bits (166), Expect = 2e-13 Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 7/219 (3%) Query: 1 MIEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWV 60 ++EVRG+ +Y + L GV + ++GP+G+GKSTLL+ I + PD G + Sbjct: 4 LLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVF 63 Query: 61 GGL---RMDEDRVR-AQMMVGFMPEE-CVFPAEWRVGELLVWVASCXXXXXXXXXXXXXX 115 G+ R+ ++R + +G++P+ +FP + + + Sbjct: 64 RGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAEERAVK 123 Query: 116 XXXXXXXXXXXXMLGG-LSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAG-LRAL 173 LS G +QR LA AL P +++LDEP + DP ++A L AL Sbjct: 124 YLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEAL 183 Query: 174 LRELSQERLVVLSSHRLSEVERVCDRVLLLHRGRIVGEG 212 R + + +++ +H +V DR+ + G + EG Sbjct: 184 FRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEG 222 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 66.6 bits (161), Expect = 7e-13 Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 14/199 (7%) Query: 26 ERGCVG-LIGPNGAGKSTLLRVITGALVPDEGEVWVGGLRMD--------EDRVRAQMMV 76 E+G + LIGPNGAGK+TLL+ ++G + + G V G ++++ D + + ++ Sbjct: 29 EKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNREPDEIARRGVI 88 Query: 77 GFMPEECVFPAEWRVGELLVWVASCXXXXXXXXXXXXXXXXXXXXXXXXXXMLGGLSRGF 136 M +F E E LV VA G LS G Sbjct: 89 YVMEGRRIFK-ELTTEENLVSVAYAAGASRDDIRSVLSYFPRLKERLGEKA--GNLSGGE 145 Query: 137 RQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLRELSQER--LVVLSSHRLSEVE 194 +Q + +A AL+ P++++LDEP G P + + A ++ L +E ++L+ + Sbjct: 146 QQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHREEGLTILLAEQNARKAL 205 Query: 195 RVCDRVLLLHRGRIVGEGS 213 + D ++ GRIV EGS Sbjct: 206 EISDYGYVIENGRIVLEGS 224 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 65.5 bits (158), Expect = 2e-12 Identities = 62/208 (29%), Positives = 87/208 (41%), Gaps = 8/208 (3%) Query: 12 GEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWVGGLRMDE---- 67 G V AL GV L+G NGAGK+TLL+ I G + P +G + V G + Sbjct: 16 GGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPKGPG 75 Query: 68 DRVRAQMMVGFMPEECVFPAEWRVGELLV--WVASCXXXXXXXXXXXXXXXXXXXXXXXX 125 D +R+ + + V+P +L V VA Sbjct: 76 DSLRSGIYMASQNPP-VYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAEASEALGLNIDP 134 Query: 126 XXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAG-LRALLRELSQERLVV 184 LG + RQR+ + AL G R V+LDEP T P A L A R + V+ Sbjct: 135 DRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAASGAAVL 194 Query: 185 LSSHRLSEVERVCDRVLLLHRGRIVGEG 212 L +HR+ E DR+++L +G V EG Sbjct: 195 LVTHRIGEAMEHADRLVILRKGVKVYEG 222 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 64.7 bits (156), Expect = 3e-12 Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 4/210 (1%) Query: 2 IEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWVG 61 +++ GV K +G V A+ V ++ V ++GP+G+GK+TLL +I G P G ++ Sbjct: 4 VKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFN 63 Query: 62 GLRMDEDRVRAQMMVGFMPEECVFPAEWRVGELLVWVASCXXXXXXXXXXXXXXXXXXXX 121 + + D + +G + + V E + + Sbjct: 64 DVDVT-DLPPNKRNIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVAKLLG 122 Query: 122 XXXXXXMLGG-LSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLRELSQE 180 LS G +QRV LA ALV P V++LDEP + D + +R+ L++L +E Sbjct: 123 IEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQKE 182 Query: 181 R--LVVLSSHRLSEVERVCDRVLLLHRGRI 208 + +H SE + DR+ ++ G I Sbjct: 183 LGITAIYVTHDQSEALAMADRIAIIASGVI 212 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 61.6 bits (148), Expect = 2e-11 Identities = 54/192 (28%), Positives = 79/192 (41%), Gaps = 6/192 (3%) Query: 1 MIEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWV 60 ++ + V K G L GV G V + G NG+GK+TLLR+ G P G V Sbjct: 4 LLRLENVWKMLGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRVSW 63 Query: 61 GGLRMDEDRVRAQMMVGFMPEECVFPAEWRVGELLVWVASCXXXXXXXXXXXXXXXXXXX 120 G R VG++ + + V E + + +S Sbjct: 64 GCPRGPRG------CVGYVGHTPMVYGDLTVWENVEFFSSLHGGSLGDYPLAAEAWRLLG 117 Query: 121 XXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLRELSQE 180 + LS G+R+R+ + AL+G PR+++LDE TG D A L LLR E Sbjct: 118 LEKYGSHLASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLLRLALGE 177 Query: 181 RLVVLSSHRLSE 192 L +L + L E Sbjct: 178 GLALLMTTPLLE 189 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 60.5 bits (145), Expect = 5e-11 Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 20/223 (8%) Query: 2 IEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWVG 61 + + G+ K +G+ AL G+ + V L+GP+G GK+T LR++ G PD G V+ Sbjct: 4 VRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFD 63 Query: 62 GLRM----DEDRVRAQMMVGFMPEECVFPAEWRVGELLVWVASCXXXXXXXXXXXXXXXX 117 G + +DR A + + A W + +A Sbjct: 64 GRDVTGLPPKDRNVAMVFQSY--------ALWPHMRVFDNIAFPLKIKKLPRDEIVRRVR 115 Query: 118 XXXXXXXXXXMLG----GLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRAL 173 +L LS G +QRV +A A+V P V+++DEP + D + +R+ Sbjct: 116 WAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSE 175 Query: 174 LRELSQERL---VVLSSHRLSEVERVCDRVLLLHRGRIVGEGS 213 +++L Q RL ++ +H E + DR+++++ G I G+ Sbjct: 176 IKKL-QRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGT 217 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 60.5 bits (145), Expect = 5e-11 Identities = 56/216 (25%), Positives = 84/216 (38%), Gaps = 10/216 (4%) Query: 2 IEVRGVRKAYG-EVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWV 60 + + GV Y L GV F V L+GPNG+GK+TLLR++ G + P G V V Sbjct: 6 VRLEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEV 65 Query: 61 GGLRMDEDRVRAQMMVGFMPEECVFPAEWRVGELLV----WVASCXXXXXXXXXXXXXXX 116 G R + M+G+ P + E+ + V+ Sbjct: 66 CG----SPPGRVRRMLGYAPASPEVDPRLKAVEVALLYRYGVSEGVAWGRRDWEEVLAAL 121 Query: 117 XXXXXXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLRE 176 G LS G R+ V LA L P + +LDEP + D + +LR Sbjct: 122 GEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRS 181 Query: 177 LSQERLVVLSSHRLSEVERVCDRVLLLHRGRIVGEG 212 L +V ++H D V++L G + +G Sbjct: 182 LRGRATIVYTTHD-PLAAMAADSVIMLREGLLHAQG 216 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 60.5 bits (145), Expect = 5e-11 Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 19/217 (8%) Query: 12 GEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGAL----VPDEGEV--------W 59 G V AL GV + + ++G +G GKSTL R I L V ++G + Sbjct: 20 GVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNT 79 Query: 60 VGGLRMDED---RVRAQM--MVGFMPEECVFPAEWRVGELLVWVASCXXXXXXXXXXXXX 114 V +R+ ED ++R ++ M+ P + P ++ V+ Sbjct: 80 VDLVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDHVSGEKRRVEKIAQEILK 139 Query: 115 XXXXXXXXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALL 174 LS G +QR+ +AA+L+ PR+++ DEP T D QA + +L Sbjct: 140 KLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKML 199 Query: 175 RELSQ--ERLVVLSSHRLSEVERVCDRVLLLHRGRIV 209 L + E ++L +H L+ + DR+ +++ G +V Sbjct: 200 SRLREELETTIILITHNLAVAAEIADRIAVMYAGHVV 236 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 60.1 bits (144), Expect = 7e-11 Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 19/219 (8%) Query: 12 GEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWVGGLRMDEDRVR 71 G V+A+ GV F +G+ G +G+GKSTL I G LVP G + G + +D V Sbjct: 20 GIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILG-LVPPPGRIVGGRIMIDGMDVT 78 Query: 72 A-------------QMMVGFMPEECVFPAEWRVG---ELLVWVASCXXXXXXXXXXXXXX 115 + ++ + F V + VG E ++ + Sbjct: 79 SMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELL 138 Query: 116 XXXXXXXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLR 175 LS G +QRV +A AL P +V+ DEP T D QA + LL+ Sbjct: 139 ESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLK 198 Query: 176 ELSQER--LVVLSSHRLSEVERVCDRVLLLHRGRIVGEG 212 +L+ E+ ++L +H LS + + + V++++ G+I G Sbjct: 199 KLAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEYG 237 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 59.7 bits (143), Expect = 9e-11 Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 16/221 (7%) Query: 2 IEVRGVRKAY---GE-VEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGE 57 + V GV K Y GE + AL V + ++GP+G+GK+TLL +I G P+ G Sbjct: 11 VVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGR 70 Query: 58 VWVGGLRMDED------RVRAQMMVGFMPEECVFPAEWRVGELLVWVASCXXXXXXXXXX 111 V V G + R R + + + + P + +L+ +A Sbjct: 71 VIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIPTLTALENILLPMALAGKANRLRGQE 130 Query: 112 XXXXXXXXXXXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFD-PPAQAGL 170 L G G +QR+ +A AL P ++V DEP D + + Sbjct: 131 LLRRVGLGGKERRYPEELSG---GEQQRLAVAVALANDPPIIVADEPTGELDIATGERIV 187 Query: 171 RALLREL-SQERLVVLSSHRLSEVERVCDRVLLLHRGRIVG 210 R LL E S+ + VVL++H V R+ DRV ++ GR+ G Sbjct: 188 RILLEEAHSRGKTVVLTTHD-PRVARMADRVAVIEDGRLRG 227 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 58.9 bits (141), Expect = 2e-10 Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 6/216 (2%) Query: 2 IEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWVG 61 I + V K +G AL V + L+GP+G GK+T LRVI G PDEG V++G Sbjct: 4 IRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIG 63 Query: 62 GLRMDEDRVRAQMMVGFMPEECVFPAEWRVGELLVWVASCXXXXXXXXXXXXXXXXXXXX 121 + + + ++P RV + + + Sbjct: 64 SRDVTMLKPYERNTAMVFQNYALWP-HMRVFDNIAYGLKLRKLPRSEIVRRVRWAAELLE 122 Query: 122 XXXXXXMLGGLSRGFRQ-RVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLRELSQE 180 G +Q RV +A A+V P V+++DEP + D + +R + L Q+ Sbjct: 123 IDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRL-QK 181 Query: 181 RL---VVLSSHRLSEVERVCDRVLLLHRGRIVGEGS 213 RL +V +H E + RV +++RGR+ G+ Sbjct: 182 RLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGT 217 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 56.2 bits (134), Expect = 1e-09 Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 13/212 (6%) Query: 14 VEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWVGGL-----RMDED 68 V A+ GV E + ++G +G GK+TL + I G P +G ++ G R+ D Sbjct: 35 VRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARD 94 Query: 69 R-VRAQMMVGFMPE----ECVFPAEWRVGE-LLVWVASCXXXXXXXXXXXXXXXXXXXXX 122 R +R ++ + F + + P +V E L++ + Sbjct: 95 RRLRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETVGLTPGR 154 Query: 123 XXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLRELSQE-- 180 LS G RQRV +A LV P V+V DEP + D +A + L+ + + Sbjct: 155 EFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTG 214 Query: 181 RLVVLSSHRLSEVERVCDRVLLLHRGRIVGEG 212 +VL +H ++ V DR+ +++ G+IV G Sbjct: 215 ATIVLITHDIAVARAVADRIAVMYLGKIVEVG 246 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 56.2 bits (134), Expect = 1e-09 Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 17/218 (7%) Query: 12 GEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDE----GEVWVGGLRM-- 65 G V A+ GV + + ++G +G+GKSTL I ++P G + G+ + Sbjct: 18 GIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRILYSGVDLLS 77 Query: 66 ----DEDRVRAQMMVGFMPEECVFPAEWR-----VGELLVWVASCXXXXXXXXXXXXXXX 116 + R R + + + + +R + E L+ Sbjct: 78 LAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLASSGSEAESMAGDALE 137 Query: 117 XXXXXXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLRE 176 LS G RQRV +AAA+ P++++ DEP T D QA + L+++ Sbjct: 138 LVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKIMDLMKK 197 Query: 177 LSQER--LVVLSSHRLSEVERVCDRVLLLHRGRIVGEG 212 L +ER V+L +H + DR+ +++ G +V G Sbjct: 198 LQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIG 235 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 55.1 bits (131), Expect = 2e-09 Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 7/217 (3%) Query: 1 MIEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEVWV 60 +I++ V YG+++ L V ++GPNGAGKSTLL+ + G +G V Sbjct: 5 IIKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLF 64 Query: 61 GGLRMDE----DRVRAQMMVGFMPEECVFPAEWRVGELLVWVASCXXXXXXXXXXXXXXX 116 + DR + M F E E V E L Sbjct: 65 ENTDVTHMPPHDRAKIGMTFIFQLENIF--RELTVYENLRLAGYDLPEDVFRDRLEEVFS 122 Query: 117 XXXXXXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLRE 176 G LS G RQ + +A ++ P+V ++DEP G P + + +R Sbjct: 123 MFPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVRI 182 Query: 177 LSQE-RLVVLSSHRLSEVERVCDRVLLLHRGRIVGEG 212 L++E VVL + + D+ +L+ GRI +G Sbjct: 183 LNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDG 219 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 53.9 bits (128), Expect = 5e-09 Identities = 61/241 (25%), Positives = 103/241 (42%), Gaps = 32/241 (13%) Query: 1 MIEVRGVRKAY----GEVEALCGVGF-VC-GERGCVGLIGPNGAGKSTLLRVITGALVPD 54 +IEV ++ + G V+A+ V F +C GE C L+G G GKS R +T + P Sbjct: 9 IIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYC--LVGETGCGKSVTSRALTRLIYPP 66 Query: 55 ----EGEVW--------VGGLRMDED---RVRAQMMVGFMPE-----ECVFPAEWRVGEL 94 EG+++ V + +DE R+R + + + + ++ ++VGE Sbjct: 67 GRIVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGET 126 Query: 95 LVWVASCXXXXXXXXXXXXXXXXXXXXX--XXXXXMLGGLSRGFRQRVGLAAALVGGPRV 152 ++ LS G +QR + +L P++ Sbjct: 127 MLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKL 186 Query: 153 VVLDEPGTGFDPPAQAGLRALLRELSQER--LVVLSSHRLSEVERVCDRVLLLHRGRIVG 210 ++ DEP T D QA + LL +L +E ++L +H L V CDRV +++ G IV Sbjct: 187 LIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVE 246 Query: 211 E 211 E Sbjct: 247 E 247 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 52.8 bits (125), Expect = 1e-08 Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 36/206 (17%) Query: 30 VGLIGPNGAGKSTLLRVITGALVPDEGEVWVGGLR--------MDEDRVRAQMMV----- 76 +GL+G +G+GK+T RVI P G ++ G+ + E R RAQ++ Sbjct: 65 LGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGLKEFRRRAQIIFQDPYG 124 Query: 77 GFMPEECVFP--AE------WRVGELLVWVASCXXXXXXXXXXXXXXXXXXXXXXXXXXM 128 P + +F AE +VG+L ++ S Sbjct: 125 SLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQVGLNETHLYRYPHE---------- 174 Query: 129 LGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLRELSQERLV--VLS 186 S G RQR+ +A L P +VLDEP + D QA + LL++L ++ + + Sbjct: 175 ---FSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTYLFI 231 Query: 187 SHRLSEVERVCDRVLLLHRGRIVGEG 212 SH L V + D + +++ G+IV G Sbjct: 232 SHDLGVVRYMSDYIAVMYLGKIVEFG 257 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 52.8 bits (125), Expect = 1e-08 Identities = 56/213 (26%), Positives = 86/213 (40%), Gaps = 38/213 (17%) Query: 6 GVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPDEGEV--WVGGL 63 G+R A G G + G +G+ GPNG GK+T +R + GAL P EG V +V L Sbjct: 363 GLRVALDGFTLTSGEGALYGGE-VIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYVEDL 421 Query: 64 RMD-----------EDRVRAQMMVGFMPEECVFPAEWRVGELLVWVASCXXXXXXXXXXX 112 R+ D Q++ P + P W EL+ Sbjct: 422 RVSYKPQYISPESLPDATVEQVLKAANP-AILAPGSWLNLELV----------------- 463 Query: 113 XXXXXXXXXXXXXXXMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRA 172 + LS G Q+V +AAAL V +LDEP D + G+ Sbjct: 464 ----KRMRLDKLLERRVRTLSGGELQKVAVAAALAREADVYLLDEPSAYLDVEERVGVAR 519 Query: 173 LLREL--SQERLVVLSSHRLSEVERVCDRVLLL 203 +R + ++E ++ H L ++ V DR++L+ Sbjct: 520 AIRRIVETREAAALVVEHDLMILDYVSDRIMLV 552 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 52.4 bits (124), Expect = 1e-08 Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 2/80 (2%) Query: 132 LSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLRELSQE--RLVVLSSHR 189 LS G RQRV +A AL P+++VLDEP + D QA + LLREL ++ +L +H Sbjct: 190 LSGGQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHD 249 Query: 190 LSEVERVCDRVLLLHRGRIV 209 +S V + V++++ G+I+ Sbjct: 250 ISVVRYMSSSVVVMYSGKIM 269 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 51.6 bits (122), Expect = 2e-08 Identities = 56/201 (27%), Positives = 76/201 (37%), Gaps = 46/201 (22%) Query: 27 RGCVGLIGPNGAGKSTLLRVITG--------------------ALVPDEGEVWVGGLRMD 66 RG L GP G GKST+LRV G LVP + ++++ L Sbjct: 29 RGITLLAGPTGGGKSTILRVAAGLATRIYGGYLRGEVEARGKPVLVPQDYDLFILSLTPR 88 Query: 67 EDRVRAQMMVGFMPEECVFPAEWRVGELLVWVASCXXXXXXXXXXXXXXXXXXXXXXXXX 126 E+ G P E A EL + Sbjct: 89 EELEYCYEASGLPPWEARREAVRLAEELGI-------------------------EDLLD 123 Query: 127 XMLGGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLRELSQERLVVLS 186 + LS G RQRV +A+AL G V+++DEP DP L LLR L E VV++ Sbjct: 124 RRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVESLIRLLRRLDVEG-VVVA 182 Query: 187 SHRLSEVERVCDRVLLLHRGR 207 HR+ + V L++ GR Sbjct: 183 EHRVHYLLPAASSVYLVYDGR 203 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 49.7 bits (117), Expect = 9e-08 Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 16/227 (7%) Query: 2 IEVRGVRKAYGEVEALCGVGFVCGERGCVGLIGPNGAGKSTLLRVITGALVPD--EGEVW 59 +EV+G+ GE L V F ++GPNG+GKS+L VI G + + EG++ Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 60 VGGLRMDEDRVRAQMMVGFMPEECVFPAEWRVGELLVWVASCXXXXXXXXXXXXXXXXXX 119 + G + E + + G + P V + +A Sbjct: 63 LDGESIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKIV 122 Query: 120 XXXXXXXXMLG------------GLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQ 167 LG G S G ++R L A++ P++V+LDEP +G D Sbjct: 123 KRMYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGL 182 Query: 168 AGLRALLRELSQE-RLVVLSSHRLSEVERV-CDRVLLLHRGRIVGEG 212 + +++L R V+L +H + V DRV +L+RG ++ G Sbjct: 183 KIVAEFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGSVLARG 229 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 47.8 bits (112), Expect = 4e-07 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%) Query: 132 LSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLRELSQE--RLVVLSSHR 189 LS G RQRV +A A + P +VV DEP + D +A + LL ++ ++ +H Sbjct: 196 LSGGQRQRVAIARAFILNPSLVVADEPVSMLDVSIRAEILELLLGFREKLGTSLLFITHD 255 Query: 190 LSEVERVCDRVLLLHRGRIVGEG 212 L+ +CDR+ +++ G+IV G Sbjct: 256 LAVARYICDRIAVMYLGKIVETG 278 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 46.6 bits (109), Expect = 8e-07 Identities = 22/85 (25%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 130 GGLSRGFRQRVGLAAALVGGPRVVVLDEPGTGFDPPAQAGLRALLRELSQERLV--VLSS 187 G LS G + + +A A++ G ++++DEP G +P + ++ L++E+ + ++ Sbjct: 152 GELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVNPRLAGSIMERIKYLAREKGITFLIIE 211 Query: 188 HRLSEVERVCDRVLLLHRGRIVGEG 212 HR+ V+ DRV + G+++ G Sbjct: 212 HRIGLVKEYVDRVYAMSMGKVIASG 236 Score = 43.9 bits (102), Expect = 5e-06 Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 2/63 (3%) Query: 1 MIEVRGVRKAYGEVEALCGVGFVCGERGCVGL-IGPNGAGKSTLLRVITGALVPDEGEVW 59 ++ V + K +G + AL V ERG V L IGPNG+GK+TL+ VI+G PD G V Sbjct: 6 ILRVEDLEKRFGGIVALDKVNLEI-ERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVL 64 Query: 60 VGG 62 G Sbjct: 65 FKG 67 >gi|118431756|ref|YP_874928.1| hypothetical protein APE_2154b [Aeropyrum pernix K1] Length = 77 Score = 41.6 bits (96), Expect = 3e-05 Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 152 VVVLDEPGTGFDPPAQAGLRALLRELSQERLVVLSSHRLSEVERVCDRVLLLHRG 206 + +LDEP TG D A +RA + ELS + V++++H + V V DRV ++ G Sbjct: 1 MTLLDEPTTGLDREAYESVRAAILELSLDSAVIVATHDVRLVGDVADRVYMVRDG 55 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.142 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 299,495 Number of Sequences: 1700 Number of extensions: 12545 Number of successful extensions: 165 Number of sequences better than 1.0e-04: 40 Number of HSP's better than 0.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 78 length of query: 307 length of database: 492,079 effective HSP length: 77 effective length of query: 230 effective length of database: 361,179 effective search space: 83071170 effective search space used: 83071170 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719292|ref|YP_003874824.1| ribonuclease Z [Spirochaeta thermophila DSM 6192] (311 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431611|ref|NP_148202.2| ribonuclease Z [Aeropyrum pernix K1] 100 5e-23 gi|14600857|ref|NP_147381.1| metal dependent hydrolase [Aeropyru... 47 5e-07 >gi|118431611|ref|NP_148202.2| ribonuclease Z [Aeropyrum pernix K1] Length = 310 Score = 100 bits (249), Expect = 5e-23 Identities = 78/310 (25%), Positives = 136/310 (43%), Gaps = 10/310 (3%) Query: 3 MEVFVLGTGGMMPLPYRYLTSVLVRR-EGELFLFDCGEGTQVSLRSLNLRWKKISAIFIS 61 +++ +LG+G +P +R+ S+LV+ G L D GEG Q+ LR + + I + I+ Sbjct: 4 IDITILGSGSAVPSLHRWHPSILVKDWMGNTVLLDAGEGVQIRLRKVGVSPSSIDVLAIT 63 Query: 62 HTHADHVTGLPGILMLSSQVDRSDPLYIYGPPKIREYVEMSRQVLDMYINYEIVVEEVPW 121 H H DH+ G+ G+LM S R PL I + E++ + + + +E+++ + Sbjct: 64 HPHGDHINGVAGLLMTMSLQSRRKPLTIISTSESLEFISETLEATRENLGFEVMLVDARE 123 Query: 122 GESVVCYR--GEGFSVRTIPLRHTKPCVGYVLEEDPRPGVFHPERARELGVPMGPLWSR- 178 + R G+ ++ H + + L RP + L + GP W R Sbjct: 124 SGVLDVGRPSGDRLTIEWERACHNIESLAFKLVWTLRPRI-DARILERLDLKAGP-WIRE 181 Query: 179 -LQRGEVVKNVRGEEVRPEMVLGPPRAGRKVAFVTDTLYLPHIKDYVKGADLFICEGMFS 237 +++G +V G V + + VA+ DT + ++ G+D+ I + Sbjct: 182 LIEKGRA--HVEGRIVTLKDISASGERKYSVAYTGDTSPCTRVAKFLHGSDILIHDSTLD 239 Query: 238 HELAETAAEKRHLTXXXXXXXXXXXXXXXKLGLIHYSPRYTNRDLQVLLEEAKEEFPEAF 297 LA AAE+ H T L L H S RY+ + ++LL+EA+ FP Sbjct: 240 SSLAREAAERGHSTSLDAARNALTSGAKL-LILFHVSSRYSGYEARLLLKEARRVFPNTV 298 Query: 298 LCRDRQTIPI 307 L D + I Sbjct: 299 LSWDGMKLSI 308 >gi|14600857|ref|NP_147381.1| metal dependent hydrolase [Aeropyrum pernix K1] Length = 250 Score = 47.4 bits (111), Expect = 5e-07 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%) Query: 4 EVFVLGTGGMMPLPYRYLTSVLVRREGELFLFDCGEGTQVSLRSLNLRWKKISAIFISHT 63 E++ LGTG + P R +S+L+ G L D G +L +L + I A+ ++H Sbjct: 5 ELYFLGTGAAVN-PRRMQSSLLLDYMGVTVLVDASCGAANALEALGYPPESIGAVVVTHG 63 Query: 64 HADHVTGLPGILMLSSQVDRSDPLYIYGPP 93 H DHV GL G+L PL ++ PP Sbjct: 64 HYDHVCGL-GLLSFIKSFRGGPPLKLHSPP 92 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 332,486 Number of Sequences: 1700 Number of extensions: 15555 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 2 length of query: 311 length of database: 492,079 effective HSP length: 77 effective length of query: 234 effective length of database: 361,179 effective search space: 84515886 effective search space used: 84515886 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719293|ref|YP_003874825.1| glutamate-1-semialdehyde 2,1-aminomutase [Spirochaeta thermophila DSM 6192] (419 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431820|ref|NP_148523.2| glutamate-1-semialdehyde aminotran... 283 6e-78 gi|118431743|ref|NP_148406.2| glutamate-1-semialdehyde aminotran... 203 6e-54 gi|14601424|ref|NP_147962.1| acetyl-lysine aminotransferase/acet... 128 2e-31 gi|14600726|ref|NP_147247.1| 4-aminobutyrate aminotransferase [A... 120 6e-29 >gi|118431820|ref|NP_148523.2| glutamate-1-semialdehyde aminotransferase [Aeropyrum pernix K1] Length = 429 Score = 283 bits (724), Expect = 6e-78 Identities = 167/397 (42%), Positives = 217/397 (54%), Gaps = 8/397 (2%) Query: 1 MARDQVRSYLVGGVNSPVRAFRAVGEEPLKVARAEGPFVYDEEGRRYLDFIGGWGALILG 60 M ++ + GGVNSPVRA AV P V R EG ++Y +G R +D + +G LILG Sbjct: 9 MLFERTKELFPGGVNSPVRA--AVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILG 66 Query: 61 HAHPAVVEAVETAASRGICFGLSHPGEEELAARIAGAFPWVERVRLVNSGTEACMTAVRL 120 H HP V+EAVE A +RG +G E LA +I G +R VNSGTEA MTA+RL Sbjct: 67 HKHPRVLEAVEEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRL 126 Query: 121 ARAATGRTLCVKFEGCYHGHADGFLVKMGSGGATLGLPSSQGVPSEIAGTTVVLPYNDEG 180 AR TGR L +KF+GCYHG D LV GS A G+P+S GVP +A T+V PYND Sbjct: 127 ARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVE 186 Query: 181 MVRRLFAERGKEIAAVIMEPVAGNMGVVPPRPGFLETLREETRRWGALLIFDEVMTGFRV 240 + R+FAE G IA VI+EPV N GV+PPR FL L+ +R GALLI DEV+TGFR+ Sbjct: 187 ALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRL 246 Query: 241 SRDGAAGRFGVRPDXXXXXXXXXXXXXXXXXXXXXRVMDLLSPAGPVYQAGTFAGGPVVC 300 +GA G F + D VM LL+P G V+ AGTF P+ Sbjct: 247 GLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITM 306 Query: 301 AAGNATLRVCEQEDVWALLERLGNVLDRHLSSL---EGVSYV--RCGGMWSLFFLGGVAP 355 AAG ATL+ E+E V+++ L+ S + G+ Y R M L F+G Sbjct: 307 AAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQL-FIGVEEV 365 Query: 356 RDFQEVRRQDGAAFARFHAALRSRGILAPPSAYEAWF 392 + + R+ D + + H + RG+ PS EA F Sbjct: 366 SNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLEAVF 402 >gi|118431743|ref|NP_148406.2| glutamate-1-semialdehyde aminotransferase [Aeropyrum pernix K1] Length = 430 Score = 203 bits (517), Expect = 6e-54 Identities = 147/422 (34%), Positives = 203/422 (48%), Gaps = 12/422 (2%) Query: 3 RDQVRSYLVGGVNSPVRAFRAVGEEPLKVARAEGPFVYDEEGRRYLDFIGGWGALILGHA 62 RD + ++ G R F ++ EPL V+ A+G + D GR Y+DF +GA+ LGH Sbjct: 11 RDALALFIGGAQGGLRREFHSI--EPLIVSWAKGSRIRDYRGREYIDFHMAFGAVALGHN 68 Query: 63 HPAVVEAVETAASRGICFGLS-HPGEEELAARIAGAFPWVERVRLVNSGTEACMTAVRLA 121 V V +R + G E E A + FP ++V NSG+EA M A+RLA Sbjct: 69 DDDVAARVSEQLNRLVLHGAGVSDAEIEFAKMLIRKFPMYDKVLFTNSGSEAVMMAMRLA 128 Query: 122 RAATGRTLCVKFEGCYHGHADGFLVKMGSGGATLGLPSSQGVPSEIAGTTVVLPYNDEGM 181 RA TGR + VKF+G YHG D + + + + S+GVPS A T VLPYND Sbjct: 129 RAYTGRDVVVKFDGNYHGWHDYSIYNIKNPASKGKTVESKGVPSATASTVEVLPYNDVDA 188 Query: 182 VRRLFAERGKEIAAVIMEPVAGNMGVVPPRPGFLETLREETRRWGALLIFDEVMTGFRVS 241 + G +AA I+EPVA +MGV+P GF+E LR+ G+LLIFDE++T R S Sbjct: 189 LEDYAERFGDRVAAYILEPVAHSMGVIPAEKGFVERLRKLCDTHGSLLIFDEIITFIRAS 248 Query: 242 RDGAAGRFGVRPDXXXXXXXXXXXXXXXXXXXXXRVMDLLSPAGPVYQAGTFAGGPVVCA 301 G FGVR D VM+LL A V +GT++G P+ A Sbjct: 249 DRGMQDYFGVRADLTTVGKAIANGMPVAAVLGGDNVMELL--ARGVVSSGTYSGHPLSMA 306 Query: 302 AGNATLRVCEQEDVWALL----ERLGNVLDRHLSSLEGV--SYVRCGGMWSLFFLGGVAP 355 AG ATL E + L E L +L R +S GV + + GG S++F P Sbjct: 307 AGVATLEKAEDVGLTRALRSRAEALAGIL-RDISEDLGVEAAVSQFGGSVSIYFGIDRRP 365 Query: 356 RDFQEVRRQDGAAFARFHAALRSRGILAPPSAYEAWFXXXXXXXXXXXXXXRTIREAVEE 415 ++ +E R +G A+ F +R RGIL P+ + R EAV Sbjct: 366 KNLEEALRANGDAYRVFAREMRRRGILVTPNPLKRMHLAYSHSEEELEAFHRAAEEAVRV 425 Query: 416 AR 417 A+ Sbjct: 426 AK 427 >gi|14601424|ref|NP_147962.1| acetyl-lysine aminotransferase/acetylornithine aminotransferase [Aeropyrum pernix K1] Length = 388 Score = 128 bits (322), Expect = 2e-31 Identities = 104/332 (31%), Positives = 147/332 (44%), Gaps = 19/332 (5%) Query: 14 VNSPVRAFRAVGEEPLKVARAEGPFVYDEEGRRYLDFIGGWGALILGHAHPAVVEAVETA 73 +N ++ R G L++ + +V+D+ GR+YLD G GA LGH++PA+VEAV Sbjct: 1 MNVVLKFVRFYGYRGLRIVKGSMQYVWDDSGRKYLDCHAGHGAAFLGHSNPAIVEAVVRQ 60 Query: 74 ASRGIC--FGLSHPGEEELAARIAG-AFPWVERVRLVNSGTEACMTAVRLARAATGRTLC 130 A + S P EE + A PW E + +N+GTEA A++ A ATG+ Sbjct: 61 ARELVAASSSFSTPSLEEALTEFSRIAPPWAEEIVFLNTGTEAVEAALKAAWLATGKRGI 120 Query: 131 VKFEGCYHGHADGFLVKMGSGGATLGLPSSQGVPSEIAGTTVVLPYNDEGMVRRLFAERG 190 V + +HG + S T +GVP + T + P D G V +L E Sbjct: 121 VALKNSFHGRT------LASLSVTWNPRYRRGVP--VLDTRFLSPSTDPGEVEKLVPE-- 170 Query: 191 KEIAAVIMEPVAGNMGVVPPRPGFLETLREETRRWGALLIFDEVMTGF-RVSRDGAAGRF 249 + AA+I+EP+ G G+ + LRE R GALLIFDE+ TGF R R A Sbjct: 171 -DTAAIIVEPIQGEGGLTKIYAELAKALREAADRVGALLIFDEIQTGFGRTGRVWAHESL 229 Query: 250 GVRPDXXXXXXXXXXXXXXXXXXXXXRVMDLLSPAGPVYQAGTFAGGPVVCAAGNATLRV 309 GV PD V+ L+ T A P+ AA A R Sbjct: 230 GVEPDIMTAGKSIAGGLPASAVLSREGVLATLASG---RHGSTHAANPLSMAAVAAASRF 286 Query: 310 CEQEDVWALLERLGNVLDRHL-SSLEGVSYVR 340 +E V G +L+ L +EG+ VR Sbjct: 287 LREEGVPDKARAAGALLEGLLRDRIEGLRLVR 318 >gi|14600726|ref|NP_147247.1| 4-aminobutyrate aminotransferase [Aeropyrum pernix K1] Length = 452 Score = 120 bits (301), Expect = 6e-29 Identities = 111/347 (31%), Positives = 149/347 (42%), Gaps = 37/347 (10%) Query: 28 PLKVARAEGPFVYDEEGRRYLDFIGGWGALILGHAHPAVVEAVETAASRGICFGLSHPGE 87 PL V R G V D +G RY+DF G L +GH HP VVEAV+ R + + L+ Sbjct: 37 PLVVKRGYGAVVEDVDGNRYIDFNAGIAVLNVGHNHPRVVEAVKRQLERFLHYSLTDFYY 96 Query: 88 EEL---AARIAGAFPWVERVR--LVNSGTEACMTAVRLARA--ATGRTLCVKFEGCYHGH 140 EE A R+A + P + NSG E+ ++++ RA R + F G +HG Sbjct: 97 EEAVSAAERLARSVPISGGAKTFFTNSGAESIEASIKVVRAFFRGTRPYIISFLGGFHGR 156 Query: 141 ADGFLVKMGS-------------GGATLGLPSSQ-----GVPSEIAGTTVVLPYNDEGMV 182 G + S G P G+ E G V Y ++ + Sbjct: 157 TYGAMSASASKPVHRARFYPLVPGFIHAPYPDPYRCPFPGLEGEACGEAAV-SYIEDYIF 215 Query: 183 RRLFAERGKEIAAVIMEPVAGNMGVVPPRPGFLETLREETRRWGALLIFDEVMTGF-RVS 241 +L + G E+AA + EP+ G G V P FL +L++ R+ G LLI DEV TGF R Sbjct: 216 SKL-VDPG-EVAAFLFEPIQGEGGYVVPPDSFLPSLQKLARKHGILLIADEVQTGFARTG 273 Query: 242 RDGAAGRFGVRPDXXXXXXXXXXXXXXXXXXXXXRVMDLLSPAGPVYQAGTFAGGPVVCA 301 R A +GV PD VM L P G A TF G PV A Sbjct: 274 RMFAVEHWGVEPDVMALAKAMGGGLPLGAAVGRSEVMSL--PRGS--HANTFGGNPVALA 329 Query: 302 AGNATLRVCEQEDVWALLERLG----NVLDRHLSSLEGVSYVRCGGM 344 A NA + V E E +W +RLG +L L V +VR G+ Sbjct: 330 AFNAVMDVIEGERLWERSQRLGEKALKILGEAAEELSIVGHVRGKGL 376 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 441,344 Number of Sequences: 1700 Number of extensions: 19988 Number of successful extensions: 81 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 5 length of query: 419 length of database: 492,079 effective HSP length: 79 effective length of query: 340 effective length of database: 357,779 effective search space: 121644860 effective search space used: 121644860 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719294|ref|YP_003874826.1| delta-aminolevulinic acid dehydratase [Spirochaeta thermophila DSM 6192] (323 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431821|ref|NP_148524.2| delta-aminolevulinic acid dehydrat... 242 1e-65 >gi|118431821|ref|NP_148524.2| delta-aminolevulinic acid dehydratase [Aeropyrum pernix K1] Length = 353 Score = 242 bits (617), Expect = 1e-65 Identities = 147/315 (46%), Positives = 180/315 (57%), Gaps = 11/315 (3%) Query: 5 RALRRDEATRDRIAETAWSRDQLIQALFVTTESKGKEPVPGFPGVYRHG--XXXXXXXXX 62 R LR R +AET I LFV K +P+ G PG +++ Sbjct: 25 RRLRLHPGVRSLVAETRLDPSMFILPLFVEDGLKTPKPLRGLPGHFKYPPESRELVELVS 84 Query: 63 XXXXXGIRKVLLFGVVPPSYKDETASWALRADGPVPTAVRELKRRFPELEVF-TDVCVCG 121 G+R L+FG PS K + A GPV A++ ++ V DVC+CG Sbjct: 85 RALYLGVRSFLVFGT--PSMKSFEGAEAWSPRGPVQRAIKFVRAELGWRPVIMADVCLCG 142 Query: 122 YTSHGHCGLVR----GGEVRNDESVVLLARMAAVHGEAGADWVAPSAMMDGQVEAIRRAL 177 YT HGHCG R G + ND+S+ +++ EAGAD+VAPS MMDGQV AIR AL Sbjct: 143 YTDHGHCGYPRETPRGVLIENDKSIEAYGKISVSLAEAGADFVAPSGMMDGQVAAIRSAL 202 Query: 178 DGRGLSRVRILSYAAKYASRLYGPFREAAGSAPAFGDRRSYQMDVRNGAEAVVEVWADLV 237 D G + V I+SY+AKYAS YGPFR+ SAP FGDRRSYQMD RN EAV EV D Sbjct: 203 DNAGYTEVGIMSYSAKYASGFYGPFRDVMDSAPRFGDRRSYQMDPRNRFEAVKEVLLDAA 262 Query: 238 EGADAVMVKPALFYLDVIQRVRAAFPRVRLAAYLVSGEYAMLVRAEEEGSV--PGAFREA 295 EGAD VMVKPAL YLDVI V+ + P + LAAY VSGEY ML A E+G V E Sbjct: 263 EGADIVMVKPALSYLDVISEVKRSVPWLPLAAYNVSGEYLMLKAAAEKGLVDYETVMLEI 322 Query: 296 VTAVFRAGADLLITY 310 +T++ RAGAD +ITY Sbjct: 323 LTSIARAGADAVITY 337 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 333,941 Number of Sequences: 1700 Number of extensions: 14642 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 1 length of query: 323 length of database: 492,079 effective HSP length: 77 effective length of query: 246 effective length of database: 361,179 effective search space: 88850034 effective search space used: 88850034 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719295|ref|YP_003874827.1| porphyrin biosynthesis protein HemD [Spirochaeta thermophila DSM 6192] (672 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430947|ref|NP_147070.2| uroporphyrin-III C-methyltransfera... 83 2e-17 gi|118431819|ref|NP_148522.2| hydroxymethylbilane synthase [Aero... 79 5e-16 >gi|118430947|ref|NP_147070.2| uroporphyrin-III C-methyltransferase [Aeropyrum pernix K1] Length = 249 Score = 83.2 bits (204), Expect = 2e-17 Identities = 76/237 (32%), Positives = 103/237 (43%), Gaps = 21/237 (8%) Query: 228 GRVAIVGAGPGTADFXXXXXXXXXXXXXXXXYDDLVYPELLAG--RTAELVAVGRRKGKE 285 G+V IVG GPG YD L L+ A + VG++ G E Sbjct: 6 GKVVIVGGGPGDPGLITVKGMKALEEADAILYDRLAPKGLVEKLQTPALKIYVGKKPG-E 64 Query: 286 RYTVEEVCDLMIQAAYAGKKVVRLKGGDPSLYARLEEELSWLRAARIPYEVVPGISAFQA 345 + EE+ LM A G V RLKGGDP Y R EEE +L + V+PG+ ++ A Sbjct: 65 GMSQEEINRLMEILACRGMTVARLKGGDPYTYGRGEEECMYLMEKGVECIVIPGVPSYIA 124 Query: 346 ASACTEIPLTSREGASSLLISTGYPPERALIPPPDGRL----------SCVYYMAGEEFP 395 ASA IPLTSR +SS + TG + A P R+ + V M Sbjct: 125 ASALHGIPLTSRGISSSFAVITG---KEAPGKPAGKRVKLEDIARSVDTLVILMGASTSA 181 Query: 396 RICARFLEAGWDPHTPAVVVSAAARPEQTHLSLTLEDGARWTGSLPR---PALLLVG 449 + R ++ P TP + S+ + PE L L G R G R PA+++VG Sbjct: 182 ELAERLIKV-LPPETPVAIASSVSTPEAETLVTDLR-GLRELGRQGRVKSPAVIIVG 236 >gi|118431819|ref|NP_148522.2| hydroxymethylbilane synthase [Aeropyrum pernix K1] Length = 307 Score = 78.6 bits (192), Expect = 5e-16 Identities = 69/236 (29%), Positives = 105/236 (44%), Gaps = 15/236 (6%) Query: 1 MRVLRLGTRGSRLALAQVREWIARWRDASPEAG-EVEWEPMVLHPRGDRDKRTPLHLVEG 59 MRV R+ RGSRL+L QV + + + S AG + WE + + GD PL + Sbjct: 1 MRV-RVAARGSRLSLLQVEQAL---EELSRYAGVSMHWEVVRVKSAGDVWSDRPLESIGV 56 Query: 60 SDFFTDALDEALLEGRIDVALHSAKDLPDELREG-LSLAAITPLEGPREDVLVLHPRWAS 118 FT +D A+ G D+A+HS KD+P G L + I R+ ++ Sbjct: 57 VGVFTREVDRAVASGAADIAVHSLKDMPTSGYGGPLKIVYIASRPSARDALISRQ----G 112 Query: 119 ASSVDELPAGLRIGTSSARRREQLSHLRSDWELVDIRGTIEERLARVSSGEIDGVVMAKV 178 V++L G +GTSSARRR H + ++RG ++ RL ++ G D ++ ++ Sbjct: 113 PGRVEDLEPGSTLGTSSARRRALSLHYNPRIRVENLRGNLDTRLRKLREGLYDAIIASEA 172 Query: 179 ALTRLAXXXXXXXXXXXX---XXXQGRLAAVVREGDEEVRRLCAVLDDRGRWGRVA 231 L RL QG +A V R G + L + D+ W VA Sbjct: 173 GLIRLGVDVEYTPLDPSYFPPAPGQGFVAVVARVGSNVEKMLRDL--DKPPWWHVA 226 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 735,702 Number of Sequences: 1700 Number of extensions: 35163 Number of successful extensions: 118 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113 Number of HSP's gapped (non-prelim): 2 length of query: 672 length of database: 492,079 effective HSP length: 83 effective length of query: 589 effective length of database: 350,979 effective search space: 206726631 effective search space used: 206726631 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719296|ref|YP_003874828.1| glutamyl-tRNA reductase [Spirochaeta thermophila DSM 6192] (345 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601976|ref|NP_148521.1| glutamyl-tRNA reductase [Aeropyrum ... 66 1e-12 >gi|14601976|ref|NP_148521.1| glutamyl-tRNA reductase [Aeropyrum pernix K1] Length = 416 Score = 65.9 bits (159), Expect = 1e-12 Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 3/147 (2%) Query: 40 MLLQTCNRWELVVPDSPRAMARVGSWCEERGGFPGRIYRGREAFFHLCRVVAGMDSVVPG 99 +++ TCNR+E+ + R + + S GG +G +A HL RV +G++S + G Sbjct: 42 VIIATCNRFEVYLDSPSRLVEDLASSIASPGGEGLVRLQGIDAARHLFRVASGLESQIIG 101 Query: 100 DTEIVSQFKAAWRQVAEAGTVGPVLLNLCQQVLGVAKRIRSCCTLSQGYRSVAGLAAWWM 159 D E++ Q + AW + E G P+L + + L R+RS +S G + A Sbjct: 102 DHEVLGQVRRAWLKSREKGFTTPLLDEVFHRALKTGARVRSESAISSGGVGYSSAAVSLA 161 Query: 160 REQLG---PGGRIAVLGTGRVARDVLR 183 LG G R+ ++G G A + R Sbjct: 162 ASLLGGGLDGARVGIVGAGMAAVGIAR 188 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.140 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 375,421 Number of Sequences: 1700 Number of extensions: 17207 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 1 length of query: 345 length of database: 492,079 effective HSP length: 78 effective length of query: 267 effective length of database: 359,479 effective search space: 95980893 effective search space used: 95980893 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719297|ref|YP_003874829.1| hypothetical protein STHERM_c16160 [Spirochaeta thermophila DSM 6192] (146 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431477|ref|NP_147976.2| precorrin-2 dehydrogenase [Aeropyr... 38 1e-04 >gi|118431477|ref|NP_147976.2| precorrin-2 dehydrogenase [Aeropyrum pernix K1] Length = 220 Score = 38.1 bits (87), Expect = 1e-04 Identities = 40/126 (31%), Positives = 51/126 (40%), Gaps = 7/126 (5%) Query: 4 PLLLECEGLPVVVVGAGKVGLRKARTLMEAGARVRVV-----DPVAEPPAWFRGEWRREG 58 P +L G V+VVG G VG R+A L GA+VRVV + E G Sbjct: 5 PFVLRVRGARVLVVGGGGVGGRRAVLLASKGAKVRVVSLEFSQELLRAAERLGIELIEGG 64 Query: 59 FLPA--HLEGVVLVVAATSDAGLNARICEEARARGILACNAGGREGRVVSFMTSFRWNGL 116 F A H+ +VV AT G I EA G L A + F + GL Sbjct: 65 FGEARRHIPWASIVVIATPHTGEAEEIAREALKAGKLVNVAADHRLGNLLFPFAGESKGL 124 Query: 117 VVALGS 122 +V + S Sbjct: 125 LVGVTS 130 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 171,892 Number of Sequences: 1700 Number of extensions: 8166 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 1 length of query: 146 length of database: 492,079 effective HSP length: 69 effective length of query: 77 effective length of database: 374,779 effective search space: 28857983 effective search space used: 28857983 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719298|ref|YP_003874830.1| sulfate adenylyltransferase large subunit [Spirochaeta thermophila DSM 6192] (605 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601666|ref|NP_148207.1| elongation factor 1-alpha [Aeropyru... 245 2e-66 gi|118431851|ref|NP_148568.2| translation initiation factor IF-2... 66 3e-12 gi|14601403|ref|NP_147939.1| elongation factor EF-2 [Aeropyrum p... 64 8e-12 >gi|14601666|ref|NP_148207.1| elongation factor 1-alpha [Aeropyrum pernix K1] Length = 437 Score = 245 bits (626), Expect = 2e-66 Identities = 149/433 (34%), Positives = 241/433 (55%), Gaps = 21/433 (4%) Query: 13 AHRERVAVAMVGHVDHGKSTILGRLLAEAGALPRGKLEQVQEYCR-RHARVFEYAYLLDA 71 A + + + ++GHVDHGKST++G LL G + KL++++E + R F++A++LD Sbjct: 2 AEKPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDK 61 Query: 72 LKDEQAQGITIDSARVFFSLEGRDFVCIDAPGHVEFIKNMVTGASRADAAFLVIDVREG- 130 +K+E+ +GITID + F + F IDAPGH +F+KNM+TGAS+ADAA LV+ R+G Sbjct: 62 MKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGE 121 Query: 131 ------VQENSRRHGYLLSFLGVDQVVVLVNKMDL--VGWEEEAFSTVRERFGEFLEGLG 182 + +R H L +G++Q++V VNKMD V ++++ + V +F++GLG Sbjct: 122 FEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLG 181 Query: 183 MRA--AAYIPVSGREGDNLVAPSPRMPWYDGPTVKEALLRFAPRAGREDGPFRMPVQGVY 240 + +IPVS +GDNL+ SP MPWY+GPT+ EAL + P A D P R+PVQ VY Sbjct: 182 YQVDKIPFIPVSAWKGDNLIERSPNMPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQNVY 241 Query: 241 KFTRLGDDRRIIAGTVETGRLAVGDEVVFYPSGKRSRVKRIESFNEEPPSLLSAGESKGF 300 G + G VETG L VGD+VVF P G V+ IE ++ G++ GF Sbjct: 242 SIPGAG---TVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQ-AEPGDNIGF 297 Query: 301 TLE--TQVYVRPGELAAKVGEPSPEVASAFRVTLFWL-SPHPMVKGKRYTLRLGAAREAA 357 + ++ ++ G++A + +P P VA F +F + P + G + + A ++ Sbjct: 298 AVRGVSKSDIKRGDVAGHLDKP-PTVAEEFEARIFVIWHPSAITVGYTPVIHVHTASVSS 356 Query: 358 YLSEIRAVVD-SSELTTEREKEVVEQYDVAECVLSTLKPVAFDLYHRVPPTGRFVIIDEY 416 + EI+A +D + E+ + ++ D A +KP+ + + +P GRF + D Sbjct: 357 RIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMN 416 Query: 417 EIAGGGVILEALP 429 G G++ + P Sbjct: 417 RTVGIGIVTDVKP 429 >gi|118431851|ref|NP_148568.2| translation initiation factor IF-2 [Aeropyrum pernix K1] Length = 414 Score = 65.9 bits (159), Expect = 3e-12 Identities = 71/282 (25%), Positives = 119/282 (42%), Gaps = 44/282 (15%) Query: 6 GERKDPTAHRERVAVAMVGHVDHGKSTILGRLLAEAGALPRGKLEQVQEYCRRHARVFEY 65 G+++ P V + +VGHVDHGK+T++ L G E++ R + Sbjct: 4 GDKRQP-----EVNIGVVGHVDHGKTTLVQAL---TGVWTMRHSEEI-----RRGMTIKL 50 Query: 66 AYLLDALKDEQAQG---------ITIDSARVFFSLEGRDFVCIDAPGHVEFIKNMVTGAS 116 Y + + + G + + SL R +DAPGH + M++GA+ Sbjct: 51 GYADGEVWECEGCGFPERFSPEPVCECDPQASASLRRR-VSYVDAPGHEILMATMLSGAA 109 Query: 117 RADAAFLVIDVREGV-QENSRRHGYLLSFLGVDQVVVLVNKMDLVGWEEEAFSTVRERFG 175 D A LV+ E Q ++ H L +G+ +V++ NK+D+V E A + +E Sbjct: 110 LMDGALLVVAANEPCPQPQTKEHLVALEIIGIKNIVIVQNKVDVVS-RERAKESYQEIL- 167 Query: 176 EFLEGLGMRAAAYIPVSGREGDNLVAPSPRMPWYDGPTVKEALLRFAPRAGRE-DGPFRM 234 F++G + IPVS + N+ A V A+ +F P R+ D P M Sbjct: 168 NFIKGTIAEGSPIIPVSALKRANIDA------------VLAAIEKFIPTPPRDLDKPPVM 215 Query: 235 PVQGVYKFTRLGDDRR-----IIAGTVETGRLAVGDEVVFYP 271 + + R G ++ G++ G VGDE+ P Sbjct: 216 YISRSFDVNRPGTPPERLVGGVVGGSIIQGVFRVGDEIEISP 257 >gi|14601403|ref|NP_147939.1| elongation factor EF-2 [Aeropyrum pernix K1] Length = 736 Score = 64.3 bits (155), Expect = 8e-12 Identities = 85/339 (25%), Positives = 138/339 (40%), Gaps = 94/339 (27%) Query: 20 VAMVGHVDHGKSTILGRLLAEAGALPRGKLEQVQEYCRRHARVFEYAYLLDALKDEQAQG 79 + ++ HVDHGK+T LLA AG + R+ A +LD L E+ +G Sbjct: 24 IGIIAHVDHGKTTTSDSLLAAAGIISE--------------RIAGEALVLDYLNVEKQRG 69 Query: 80 ITIDSARV--FFSLEGRDFVC--IDAPGHVEFIKNMVTGASRADAAFLVIDVREGV---- 131 IT+ SA V + EG+ +V ID PGHV+F + D A +V+D EGV Sbjct: 70 ITVKSANVSLYHEYEGKPYVINLIDTPGHVDFSGKVTRSLRVLDGAIVVVDAVEGVMTQT 129 Query: 132 -----QENSRRHGYLLSFLGVDQVV-------------------VLVNKMDLVG------ 161 Q R +L VD+++ + N +DL Sbjct: 130 ETVIRQALEERVRPILFINKVDRLIKELKLPPEKIQQRFVEIIKEVNNLIDLYAEPEFRK 189 Query: 162 -WEEE------AFSTVRERFGEFL-----EGLGMRAAAYIPVSGREGDNLVAPSPRMPWY 209 W+ + AF + ++++G + +G+ R G+E + S +MP + Sbjct: 190 KWKLDPNAGMVAFGSAKDKWGISVPQVKKKGITFREIIQAYEKGKEA--VAELSKKMPLH 247 Query: 210 DGPTVKEALLRFAPRAGREDGPFRMP-------------------VQGVYKFTRLGDDRR 250 + T+ + +++F P RE +R+P G F + D R Sbjct: 248 E--TLLDMVIKFVPNP-REAQRYRIPKIWKGDINSEIGQAMLNADPDGPLVFF-INDVRI 303 Query: 251 IIAGTVETGR-----LAVGDEVVFYPSGKRSRVKRIESF 284 AG V TGR L G+EV +GK+SR+ ++ + Sbjct: 304 EKAGLVATGRVFSGTLRSGEEVYLLNAGKKSRLLQVSIY 342 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 646,010 Number of Sequences: 1700 Number of extensions: 31545 Number of successful extensions: 141 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 130 Number of HSP's gapped (non-prelim): 5 length of query: 605 length of database: 492,079 effective HSP length: 82 effective length of query: 523 effective length of database: 352,679 effective search space: 184451117 effective search space used: 184451117 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719299|ref|YP_003874831.1| phosphoadenosine phosphosulfate reductase [Spirochaeta thermophila DSM 6192] (293 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601825|ref|NP_148366.1| hypothetical protein APE_2075 [Aero... 41 3e-05 >gi|14601825|ref|NP_148366.1| hypothetical protein APE_2075 [Aeropyrum pernix K1] Length = 464 Score = 41.2 bits (95), Expect = 3e-05 Identities = 63/242 (26%), Positives = 90/242 (37%), Gaps = 53/242 (21%) Query: 4 LQRLESQAIYVLREAYRSFPSLCMLWSIGKDSTVLLHLARKAFFGHVPFPLVHIDTGFKI 63 L+ LE + VLR ++ + WS GKDST L LA +A FG V++DTG Sbjct: 220 LRVLEQHSAEVLRMVGEDVDTVIVPWSGGKDSTAALLLAVEA-FGRDAVKAVYVDTGIDF 278 Query: 64 PEMIAYRDRLVREWHLDMIVGQ---NREALRERRTYPDGACSRIECCRLLKSEALKHTIA 120 E Y +++ +D++ + + L E PD C K EAL+ Sbjct: 279 IENAEYVEKVASTLGVDLVYARADVDEGLLIEGMPMPD---PEYRWCTGRKLEALR---- 331 Query: 121 GDWPRWRFDHEKGRYEEEANPTPFTGVIVGVRADEEGTRSKERVFSPRSAEGSWNIGDQP 180 +A T G V V D +G K G +P Sbjct: 332 -----------------QAFRTVSRGKTVVVTGDRDGESEKR--------------GKRP 360 Query: 181 PELWNYYNTDFAPGTHVRIHPILEWTELDIWEYIRRERIPVVSLYFDRGEGRRYRSLGCA 240 P D G V + P+ W+ + YI + IP+ LY E YR +GC Sbjct: 361 P-----LRYDEKLGYPV-VSPLKLWSGGHVQLYILSKGIPLNPLY----EAGFYR-IGCY 409 Query: 241 PC 242 C Sbjct: 410 LC 411 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 338,952 Number of Sequences: 1700 Number of extensions: 16265 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 1 length of query: 293 length of database: 492,079 effective HSP length: 76 effective length of query: 217 effective length of database: 362,879 effective search space: 78744743 effective search space used: 78744743 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719300|ref|YP_003874832.1| phosphoadenosine phosphosulfate reductase [Spirochaeta thermophila DSM 6192] (241 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601825|ref|NP_148366.1| hypothetical protein APE_2075 [Aero... 52 2e-08 >gi|14601825|ref|NP_148366.1| hypothetical protein APE_2075 [Aeropyrum pernix K1] Length = 464 Score = 51.6 bits (122), Expect = 2e-08 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 4/92 (4%) Query: 118 RCCYIRKVKPLMRALE----GAKVWITGLRKAQSPEREGVEVVEWDELHGLIKVNPLADW 173 R C RK++ L +A G V +TG R +S +R + +DE G V+PL W Sbjct: 320 RWCTGRKLEALRQAFRTVSRGKTVVVTGDRDGESEKRGKRPPLRYDEKLGYPVVSPLKLW 379 Query: 174 SDEEVWSYLKGHGVPYNVLHDRGYPSIGCEPC 205 S V Y+ G+P N L++ G+ IGC C Sbjct: 380 SGGHVQLYILSKGIPLNPLYEAGFYRIGCYLC 411 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 284,651 Number of Sequences: 1700 Number of extensions: 13569 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 1 length of query: 241 length of database: 492,079 effective HSP length: 74 effective length of query: 167 effective length of database: 366,279 effective search space: 61168593 effective search space used: 61168593 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719301|ref|YP_003874833.1| hypothetical protein STHERM_c16200 [Spirochaeta thermophila DSM 6192] (75 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.140 0.492 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,105 Number of Sequences: 1700 Number of extensions: 1736 Number of successful extensions: 0 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 75 length of database: 492,079 effective HSP length: 46 effective length of query: 29 effective length of database: 413,879 effective search space: 12002491 effective search space used: 12002491 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719302|ref|YP_003874834.1| ferredoxin-nitrite reductase [Spirochaeta thermophila DSM 6192] (737 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 781,635 Number of Sequences: 1700 Number of extensions: 36821 Number of successful extensions: 133 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133 Number of HSP's gapped (non-prelim): 0 length of query: 737 length of database: 492,079 effective HSP length: 84 effective length of query: 653 effective length of database: 349,279 effective search space: 228079187 effective search space used: 228079187 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719303|ref|YP_003874835.1| Mov34/MPN/PAD-1 family protein [Spirochaeta thermophila DSM 6192] (133 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431152|ref|NP_147414.2| hypothetical protein APE_0681.1 [A... 43 3e-06 >gi|118431152|ref|NP_147414.2| hypothetical protein APE_0681.1 [Aeropyrum pernix K1] Length = 128 Score = 43.1 bits (100), Expect = 3e-06 Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 37 IFRLTNADASPEHFSFIPEEQFATLKAARKEGLSLIGVYHSHPATPARMSEEDI 90 ++R N SPE F P + +AA K GL ++GVYH+H P S +D+ Sbjct: 40 LYRTDNLKQSPEEFESDPWQVVQAHRAAEKLGLEVVGVYHTHTTCPPSPSGKDV 93 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 122,537 Number of Sequences: 1700 Number of extensions: 4727 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 1 length of query: 133 length of database: 492,079 effective HSP length: 68 effective length of query: 65 effective length of database: 376,479 effective search space: 24471135 effective search space used: 24471135 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719304|ref|YP_003874836.1| hypothetical protein STHERM_c16230 [Spirochaeta thermophila DSM 6192] (65 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.139 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,752 Number of Sequences: 1700 Number of extensions: 3308 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 65 length of database: 492,079 effective HSP length: 37 effective length of query: 28 effective length of database: 429,179 effective search space: 12017012 effective search space used: 12017012 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719305|ref|YP_003874837.1| hypothetical protein STHERM_c16240 [Spirochaeta thermophila DSM 6192] (157 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.142 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 150,499 Number of Sequences: 1700 Number of extensions: 5885 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 157 length of database: 492,079 effective HSP length: 70 effective length of query: 87 effective length of database: 373,079 effective search space: 32457873 effective search space used: 32457873 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719306|ref|YP_003874838.1| hypothetical protein STHERM_c16250 [Spirochaeta thermophila DSM 6192] (271 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601507|ref|NP_148046.1| ATP-dependent adenyltransferase [Ae... 146 6e-37 >gi|14601507|ref|NP_148046.1| ATP-dependent adenyltransferase [Aeropyrum pernix K1] Length = 267 Score = 146 bits (368), Expect = 6e-37 Identities = 93/237 (39%), Positives = 123/237 (51%), Gaps = 9/237 (3%) Query: 11 YSRHILLPQVGGEGQERLLSGRVLVIGAGGLGSPVAYYLAAAGVGTVGLVDGDAVDLSNL 70 YSR + L +G GQ RL S +V V+G GGLG+ A YLAA+GVG + LVD D V+ SNL Sbjct: 23 YSRQLGL--LGVRGQLRLSSSKVAVVGLGGLGNLAAAYLAASGVGRLILVDRDVVEPSNL 80 Query: 71 QRQILHFTPDVGRPKVESAAEKLAALNPDVRVETYPYRVTAENIRSLIREYDFIIDGTDN 130 RQ+L+ DVGR K +AAE+L LNP+ +E P + L RE D I+DG DN Sbjct: 81 NRQVLYGKGDVGRYKAVAAAERLGELNPEAEIEPVPEALDPALAEDLAREADVIVDGLDN 140 Query: 131 FPAKFLINDACVMEGKPYSHAGVLRFQGQTFTYVPGH-MCYRCVFRDMPPKGAVPTCAEX 189 + A+ ++ A GKP H R GQ T G C C+ P + T Sbjct: 141 WMARLWLDAASWRRGKPLVHGAAERMHGQVTTVERGRSSCLACIAPSNPERAGCTT---- 196 Query: 190 XXXXXXXXXXXTIQATEAVKYLLGVGELLTDRLLVFDALTSRFREVRVGRQEECPLC 246 +++ EA+K L GVGE L +RL V D T R +R+ Q +C C Sbjct: 197 -IIAPTVGVVSSLEVLEAIKLLTGVGEPLYNRLAVIDLTTPRIEVLRLA-QMDCRAC 251 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 272,005 Number of Sequences: 1700 Number of extensions: 12339 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 1 length of query: 271 length of database: 492,079 effective HSP length: 75 effective length of query: 196 effective length of database: 364,579 effective search space: 71457484 effective search space used: 71457484 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719307|ref|YP_003874839.1| O-acetylhomoserineaminocarboxypropyltransferase [Spirochaeta thermophila DSM 6192] (415 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601268|ref|NP_147803.1| cystathionine gamma-synthase [Aerop... 179 1e-46 gi|14601818|ref|NP_148359.1| cystathionine gamma-synthase [Aerop... 154 3e-39 >gi|14601268|ref|NP_147803.1| cystathionine gamma-synthase [Aeropyrum pernix K1] Length = 384 Score = 179 bits (453), Expect = 1e-46 Identities = 131/408 (32%), Positives = 183/408 (44%), Gaps = 33/408 (8%) Query: 5 TRAVHALPQA-DPAWGGTIPPVYLSASFAYEDPETLARVFQGREPGFIYSRIGNPTVALF 63 T+AVHA + G + P++LS ++ R E G++YSR NPT Sbjct: 6 TKAVHAGEDPRETLHGDVVHPIHLSVTY-------WKRSVAEAEEGYVYSRTSNPTRDAL 58 Query: 64 EQAFTRIVEARGAVATSSGMAAITAVTFALARAGDAVAVXXXXXXXXXXXXARLVARCGI 123 E+ + AR A+A SSG+AA V AL R GD + R++AR GI Sbjct: 59 EKKLAALENARYALAFSSGLAAEATVILALLREGDHIVAFDDLYGGTKRLFQRVMARFGI 118 Query: 124 EVRLFDPLLPDQLESVLDDAVRFVFLEVIGNPRLDVPDIPLLANLAHAKGIPLVADCTLA 183 +V D P +E L A R ++LE NP L + DI A +A G LV D T A Sbjct: 119 KVTYVDARDPGNIEKALTPATRMIWLETPTNPLLKLTDIRAAAEIASRAGAYLVVDNTFA 178 Query: 184 PPGMFDPRRWGVDVAVHSLTKYIXXXXXXXXXXXXXXXXFDWVAFPGSAVQEAVGKAGEA 243 P P G D+ VHS TKY+ V S V E + A Sbjct: 179 TPYFQRPLELGADIVVHSATKYLSGHSDLLAGA---------VMVNSSEVYEKLKYHQNA 229 Query: 244 AFLYVLRREIVQDMGMSPSPIHALFHYLGLETLGLRVRQHCENAQALASFLARHPRVRAV 303 +G P P+ + L+TL LR+ H NA +A L HP+V V Sbjct: 230 -------------VGAVPPPLDSYLLMRSLKTLALRMEWHQHNAMKIAEHLESHPKVDRV 276 Query: 304 RYPGLEDDPSYPVASRLFEGGRYGGLLTFSL-SDREECFRLIRALRLPRTLANLGDAATL 362 YPGL P + +A R G Y G+L+F L R + +LR+ +LG +L Sbjct: 277 IYPGLSTHPQHSLAKRQMTG--YSGMLSFELKGGAGAAVRFVESLRIIALAESLGGVESL 334 Query: 363 IIHPASTIYHDRTEEERAGAGVHEGLLRVSVGIEESVDLMEDFSRALE 410 + P+ + EER G+ +GL+R+SVGIE+ DL+ED +AL+ Sbjct: 335 VEIPSLMTHASIPREERLKKGITDGLVRLSVGIEDLEDLIEDIEQALK 382 >gi|14601818|ref|NP_148359.1| cystathionine gamma-synthase [Aeropyrum pernix K1] Length = 389 Score = 154 bits (390), Expect = 3e-39 Identities = 124/403 (30%), Positives = 190/403 (47%), Gaps = 29/403 (7%) Query: 12 PQADPAWGGTIPPVYLSASFAYEDPETLARVFQGREPGFIYSRIGNPTVALFEQAFTRIV 71 P DP +PPV +SA + + P + R + R Y R NPTV E+A T + Sbjct: 14 PSKDPVREPVVPPVNVSAIYVHP-PGSFEREYP-RVGDLKYGRENNPTVLGLEEALTSLE 71 Query: 72 EARGAVATSSGMAAI-TAVTFALARAGDAVAVXXXXXXXXXXXXARLVARCGIEVRLFDP 130 EAR +A +SGMAA+ T V ++R V + L + GIEVRL P Sbjct: 72 EARWTLAFNSGMAALSTLVLHEVSRGAKKVLLERLTYGSTRSLLEMLSSITGIEVRLAGP 131 Query: 131 LLPDQLESVLDDAVRFVFLEVIGNPRLDVPDIPLLANLAHAKGIPLVADCTLAPPGMFDP 190 D L+ V + +E + NP L VP + + A + G+ +V D T A P + P Sbjct: 132 PWEDLLDLVC--WADLIIVESMANPTLRVPPLSGIYREAGSCGVRVVVDNTFATPIAYRP 189 Query: 191 RRWGVDVAVHSLTKYIXXXXXXXXXXXXXXXXFDWVAFPGSAVQEAVGKAGEAAFLYVLR 250 G ++ SLTKYI G ++ V + E L+ +R Sbjct: 190 LERGAHYSLESLTKYIAGHNDVV----------------GGSLSGRVEEDLEP--LWNMR 231 Query: 251 REIVQDMGMSPSPIHALFHYLGLETLGLRVRQHCENAQALASFLARHPRVRAVRYPGLED 310 + + G PI A + G++TL R A +A +L H +V+ V YPGL Sbjct: 232 KIL----GTIMQPIDAYLAWRGMKTLKARFEAQSRAAVEVAEWLESHRKVKKVYYPGLSS 287 Query: 311 DPSYPVASRLFEGGRYGGLLTFSLSD-REECFRLIRALRLPRTLANLGDAATLIIHPAST 369 P + +A R G YG +++F + REE F+L+ L+L + G T+I +PA + Sbjct: 288 HPDHELARRELNG-LYGAVVSFEIEGGREEVFKLLSRLKLVTPSPSFGGVETIISYPAIS 346 Query: 370 IYHDRTEEERAGAGVHEGLLRVSVGIEESVDLMEDFSRALEVL 412 + + ER+ GV +GLLR+SVG+E+ D+++D S+AL + Sbjct: 347 SHSNLDPLERSELGVTDGLLRLSVGLEDVSDIIDDLSQALSAI 389 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 410,300 Number of Sequences: 1700 Number of extensions: 17771 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 3 length of query: 415 length of database: 492,079 effective HSP length: 79 effective length of query: 336 effective length of database: 357,779 effective search space: 120213744 effective search space used: 120213744 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719308|ref|YP_003874840.1| thiamine biosynthesis protein ThiS [Spirochaeta thermophila DSM 6192] (69 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.140 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,645 Number of Sequences: 1700 Number of extensions: 1611 Number of successful extensions: 3 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 69 length of database: 492,079 effective HSP length: 40 effective length of query: 29 effective length of database: 424,079 effective search space: 12298291 effective search space used: 12298291 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719309|ref|YP_003874841.1| transcriptional repressor [Spirochaeta thermophila DSM 6192] (384 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431727|ref|NP_148378.2| ATP-dependent glucokinase [Aeropyr... 49 2e-07 >gi|118431727|ref|NP_148378.2| ATP-dependent glucokinase [Aeropyrum pernix K1] Length = 320 Score = 48.9 bits (115), Expect = 2e-07 Identities = 63/279 (22%), Positives = 103/279 (36%), Gaps = 27/279 (9%) Query: 80 IGIEVRPGKIKAALTNLYAEPVLKREERLPERLSPAGLSALIERMIRELLRGEDLLPEVI 139 + ++V ++ A+ +KRE G +ER+++ L G + + Sbjct: 5 VAVDVGATWVRMAIVRGGVIEAIKRERN-------PGTEEGLERVLQGLAEGLGIDRGRV 57 Query: 140 LGVGIALPGVTDPERKVLEVAPNLHLQNVSFEEFGK-LFP-FPVMVENEANASALGEHML 197 VG A G D R + +PN+ V K LFP V + N+A A+A GE++L Sbjct: 58 EKVGAASIGPLDLRRGYIVGSPNIKSHIVRLSTILKRLFPKSKVAIANDAVAAAWGEYLL 117 Query: 198 NGHCNGEDPVVYXXXXXXXXXXXXXXXXXXXXANARAGEVGHVTIFP--QGRLCNCGKKG 255 G G + Y + A EVGH+ + +G C CG G Sbjct: 118 -GRLAGTPDLGYITMSTGVGGGFVVGGRLLLGSRGNAHEVGHIVVDMGWEGGRCGCGGTG 176 Query: 256 CWERYG-------SISALLEDYSFXXXXXXXXXXXXXXXXXXXXXXAMTVWDRY----VE 304 WE + S L + A V D + ++ Sbjct: 177 HWEAIAGGRWIPRTSSVLARGWRGPETSLYRAALEGRVGSAREVFEAAAVGDDFALHVID 236 Query: 305 YL----SYGIHNVILSFDPRFVYIGGEIAIFGSRLMDPL 339 Y+ + GI +V ++D V IGG + + R++ PL Sbjct: 237 YIARASAAGIASVKAAYDVDAVIIGGSVYLNNRRMLRPL 275 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 338,493 Number of Sequences: 1700 Number of extensions: 14358 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 1 length of query: 384 length of database: 492,079 effective HSP length: 78 effective length of query: 306 effective length of database: 359,479 effective search space: 110000574 effective search space used: 110000574 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719310|ref|YP_003874842.1| xylose isomerase [Spirochaeta thermophila DSM 6192] (440 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 447,540 Number of Sequences: 1700 Number of extensions: 19683 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 440 length of database: 492,079 effective HSP length: 80 effective length of query: 360 effective length of database: 356,079 effective search space: 128188440 effective search space used: 128188440 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719311|ref|YP_003874843.1| trans-2-enoyl-CoA reductase [Spirochaeta thermophila DSM 6192] (392 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 388,410 Number of Sequences: 1700 Number of extensions: 16758 Number of successful extensions: 75 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75 Number of HSP's gapped (non-prelim): 0 length of query: 392 length of database: 492,079 effective HSP length: 79 effective length of query: 313 effective length of database: 357,779 effective search space: 111984827 effective search space used: 111984827 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719312|ref|YP_003874844.1| hypothetical protein STHERM_c16310 [Spirochaeta thermophila DSM 6192] (329 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431753|ref|NP_148418.2| erythrocyte band 7 integral membra... 55 2e-09 >gi|118431753|ref|NP_148418.2| erythrocyte band 7 integral membrane protein [Aeropyrum pernix K1] Length = 271 Score = 55.1 bits (131), Expect = 2e-09 Identities = 69/262 (26%), Positives = 111/262 (42%), Gaps = 61/262 (23%) Query: 36 SFFVVDQTEEAVVLRFGRYHRTVGPGLHWKLPLGIDRNYNVPTQVIQNMSFGFRTERPGV 95 S +V + E AV+ R GR GPGL +P +D V + + Sbjct: 31 SIKIVREYERAVIFRLGRLIGVKGPGLFLIIPF-VDTLVKVDLR---------------I 74 Query: 96 VTVYSSRDYPEESIMLTGDLNIVDVEWIIQYRIVDPKAWLFNVEDRIKTIRDISQSVINM 155 VTV D PE+ +T D V V+ ++ Y++ DP+ + +E+ + ++Q+ + Sbjct: 75 VTV----DIPEQR-TITKDNVTVGVDAVVYYKVFDPEKAVVRIENYHYAVVMLAQTTLRD 129 Query: 156 LVGDRAILNVISVDRTMIESEGQELMNQLFKQYGLGITVTAVKLQNVVPPKGEVQDAFED 215 ++G + L+ + R I + QE+++QL + GI VTAV ++ V P E Sbjct: 130 VIG-QVELDDLLTKREEINKKLQEILDQLTDPW--GIKVTAVTIKEVKLP--------ES 178 Query: 216 VNKAIQDMNRLINEGKEAYNKEIPRVKGEAQRIIQEAEGYRAERINRAEGE---AKRFLA 272 + +A+ K+A EAE +R RI AEGE AK Sbjct: 179 MLRAM---------AKQA-----------------EAERWRRARIIEAEGERQAAKIMAE 212 Query: 273 VLEEYRKAPEITRTRLYYEMLE 294 E Y K P R R ++E Sbjct: 213 AAEFYEKHPAALRLRELQTLIE 234 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 304,146 Number of Sequences: 1700 Number of extensions: 12617 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 1 length of query: 329 length of database: 492,079 effective HSP length: 77 effective length of query: 252 effective length of database: 361,179 effective search space: 91017108 effective search space used: 91017108 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719313|ref|YP_003874845.1| HflC protein [Spirochaeta thermophila DSM 6192] (345 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431753|ref|NP_148418.2| erythrocyte band 7 integral membra... 51 5e-08 >gi|118431753|ref|NP_148418.2| erythrocyte band 7 integral membrane protein [Aeropyrum pernix K1] Length = 271 Score = 50.8 bits (120), Expect = 5e-08 Identities = 47/232 (20%), Positives = 110/232 (47%), Gaps = 47/232 (20%) Query: 11 IAVVLFIFLLFGPLYVLSEGEQAVVIRFGKIVRVDQEAGLKTKVPMVDNVVKFSKKILSW 70 +A+++ + LL + ++ E E+AV+ R G+++ V + GL +P VD +VK +I++ Sbjct: 19 VALLIVLILLSMSIKIVREYERAVIFRLGRLIGV-KGPGLFLIIPFVDTLVKVDLRIVTV 77 Query: 71 DGEPQRIPTLEQQFIWVDTTARWRISDPAKFYSTLTTMERAYSRLDDIIDSAVRTVISAN 130 D QR T + + VD +++ DP E+A R+++ + V +++ Sbjct: 78 DIPEQRTITKDNVTVGVDAVVYYKVFDP----------EKAVVRIENYHYAVV--MLAQT 125 Query: 131 PLREAVRNSNIINEIPAEEVIPAEVGEEPALTEELKEYTQVSSQQEQIKKGRKVLSDEML 190 LR+ +I ++ ++++ +++E+I K + + D++ Sbjct: 126 TLRD------VIGQVELDDLL---------------------TKREEINKKLQEILDQL- 157 Query: 191 SLVKHVVPNFGIEVIDVIIRQIRYSDDLTESVYQRMIKERNQIAQAYRSFGE 242 +GI+V V I++++ + + ++ ++ ER + A+ + GE Sbjct: 158 ------TDPWGIKVTAVTIKEVKLPESMLRAMAKQAEAERWRRARIIEAEGE 203 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 315,150 Number of Sequences: 1700 Number of extensions: 12673 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 1 length of query: 345 length of database: 492,079 effective HSP length: 78 effective length of query: 267 effective length of database: 359,479 effective search space: 95980893 effective search space used: 95980893 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719314|ref|YP_003874846.1| hypothetical protein STHERM_c16330 [Spirochaeta thermophila DSM 6192] (978 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 994,566 Number of Sequences: 1700 Number of extensions: 44471 Number of successful extensions: 112 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112 Number of HSP's gapped (non-prelim): 0 length of query: 978 length of database: 492,079 effective HSP length: 86 effective length of query: 892 effective length of database: 345,879 effective search space: 308524068 effective search space used: 308524068 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719315|ref|YP_003874847.1| hypothetical protein STHERM_c16340 [Spirochaeta thermophila DSM 6192] (633 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 625,677 Number of Sequences: 1700 Number of extensions: 27502 Number of successful extensions: 98 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98 Number of HSP's gapped (non-prelim): 0 length of query: 633 length of database: 492,079 effective HSP length: 83 effective length of query: 550 effective length of database: 350,979 effective search space: 193038450 effective search space used: 193038450 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719316|ref|YP_003874848.1| transcriptional regulator containing a ferredoxin domain [Spirochaeta thermophila DSM 6192] (706 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431940|ref|NP_148720.2| molybdopterin oxidoreductase, iron... 49 4e-07 gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aero... 44 1e-05 >gi|118431940|ref|NP_148720.2| molybdopterin oxidoreductase, iron-sulfur binding subunit [Aeropyrum pernix K1] Length = 233 Score = 48.9 bits (115), Expect = 4e-07 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Query: 12 PARCVSCHR--CIAVCPVKYANDGSGEVVEVRPELCIGCGECLKACTHGAR 60 P +C C C+ VCPVK +V V +LCIGCG C++ C +GAR Sbjct: 102 PKQCNHCDNPSCVDVCPVKATYVNEDGIVLVDDDLCIGCGACIQNCPYGAR 152 >gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aeropyrum pernix K1] Length = 791 Score = 43.9 bits (102), Expect = 1e-05 Identities = 59/271 (21%), Positives = 108/271 (39%), Gaps = 31/271 (11%) Query: 429 LKEEEAQRQRVSEQRLVQQELILALYSVIDGFRKALGCVNADVLLATARELQQVHEELLS 488 L EA + ++ +++L A + +G R V A+ + A E +++ E+ + Sbjct: 527 LSGSEAVEEALNRLEEAKEKLEAAKEAYSNG-RYGEAIVLAEEAASIAEEAKELAEKAIE 585 Query: 489 GVRKMEETLRENYNTMEESSTHVFSAQEDVEEVGRRAR----LLRERSATIPEMVSLIAE 544 +E + E N +EE V QE++E++ +AR L E A I E++ + + Sbjct: 586 AA---QEAVSEVLNQVEELLDRVKDLQEEIEDIAEKAREAGVLTEEIQAAIDEVLGKLDQ 642 Query: 545 ---VADRTRLLALNASIEAAH-------------VGAAGKGFGVIAHEIRKLADETMASA 588 + + LA I+ A V ++ I L DE Sbjct: 643 ARSLLEEADSLAKEGDIDGARQKLGEARDVIEEAVSMVRDIRSMVEQAIGDLIDELRRLI 702 Query: 589 EGIGRKARELVGDIALLEEASNREASRLGEVVPALERLLFSLSDLIQTVQQSM-----GL 643 E + KA EL + A+LE + R R E + +E ++ + I+ +Q + G Sbjct: 703 EELREKAAELNTEAAMLEAKARRMGDR--EALRLIEEARSNIEEAIEKLQDATDKLGDGK 760 Query: 644 LSQVGFSTKQQEELFQTIAATVEQMTQTAEE 674 L + + Q E+L +E+ Q E Sbjct: 761 LGEAREAIGQAEDLLNEAEMKLEEARQRLGE 791 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 653,376 Number of Sequences: 1700 Number of extensions: 28499 Number of successful extensions: 136 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 129 Number of HSP's gapped (non-prelim): 6 length of query: 706 length of database: 492,079 effective HSP length: 83 effective length of query: 623 effective length of database: 350,979 effective search space: 218659917 effective search space used: 218659917 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719317|ref|YP_003874849.1| hypothetical protein STHERM_c16360 [Spirochaeta thermophila DSM 6192] (325 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601541|ref|NP_148081.1| oxidoreductase [Aeropyrum pernix K1] 78 3e-16 gi|118431478|ref|NP_147979.2| hypothetical protein APE_1495.1 [A... 70 9e-14 gi|14601748|ref|NP_148289.1| oxidoreductase [Aeropyrum pernix K1] 61 4e-11 >gi|14601541|ref|NP_148081.1| oxidoreductase [Aeropyrum pernix K1] Length = 335 Score = 77.8 bits (190), Expect = 3e-16 Identities = 89/323 (27%), Positives = 132/323 (40%), Gaps = 42/323 (13%) Query: 5 LGRSGITVSALGLGCWPMGGVAYRDEKPDGYAGADDRESIRAIHAAIDAGITFFDVADCY 64 LGR+G VS +GLG W G + G R + A++ GI D A+ Y Sbjct: 7 LGRTGPRVSRVGLGLWQFGSPMW------GGKALSADVLARGLSIAVEEGINLLDTAEVY 60 Query: 65 GAGHGEEVLGKALK--GRRDRVVIGTKFGNLFNESTRTLQGENVSPGYIRRALEASLRRL 122 G G E +LG+ALK R+ VI +K + + ++G G + A + L Sbjct: 61 GMGSSERMLGEALKRLNAREDFVIVSKVAGFRSTAGDIVKGARGIAGRLSSAPDVIL--- 117 Query: 123 KTDYIDVYQIHTWSMNL-ADVGPCLDTLDALVDEGKIRTYGWST---DLLEGAMLIAAR- 177 H W + + + + L+ V+EG YG+S DLL A+ R Sbjct: 118 ----------HHWPPPVYSRLCSVVRGLEQAVNEGLASYYGFSNYGEDLLGDALSCTRRL 167 Query: 178 -PKASVMQYQCNILFHDDRLIRYCEEHRLAGLNRSPLGMGLLSGKYRPGDRMPEGDIRGQ 236 P A + Y + RLI +H + + SPL G L+G R GD Sbjct: 168 EPVADQILYNLAYRTPEQRLIPLLHQHGMTPIAWSPLAKGALAGFKGEPTRAQAGD---- 223 Query: 237 RIEWMQYYRDGRPNETLLEKLEAVREILTRDGRSLVQGAIAWLWAKSPVNIPIPGFKNTA 296 +R + L E LE+V R G S A+AW+ K V PI G++ Sbjct: 224 -----PVFRTALEDTGLQEVLESVAR---RLGASKASVALAWVAYKGAV--PIVGWRRPE 273 Query: 297 QALELAGAMEKGPLRPEDMAEIE 319 + E A A + L ED+A ++ Sbjct: 274 RVRE-AAAAARLKLSEEDVALLD 295 >gi|118431478|ref|NP_147979.2| hypothetical protein APE_1495.1 [Aeropyrum pernix K1] Length = 326 Score = 69.7 bits (169), Expect = 9e-14 Identities = 69/260 (26%), Positives = 110/260 (42%), Gaps = 21/260 (8%) Query: 35 YAGADDRESIRAIHAAIDAGITFFDVADCYGAGHGEEVLGKALKGRRDRVVIGTKFGNLF 94 Y + E++ + A G+ FD AD YG G GE +LG+A G R V + TK G F Sbjct: 23 YGSVEPGEALAILRFARSLGVEHFDTADVYGNGLGERLLGEAFPGGRG-VFVATKVGYDF 81 Query: 95 NESTRTLQGENVSPGYIRRALEASLRRLKTDYIDVYQIHTWSMNLADVGPCLDTLDALVD 154 R ++ Y+ +AL SL RL + +D+ IH + + G L Sbjct: 82 YSGGRPVR--RYDREYLEKALRRSLERLGVESVDLLYIHNPPLEVLRGGEIYRFLSWARR 139 Query: 155 EGKIR----TYGWSTDLLEGAMLIAARPKASVMQYQCNILFHDD--RLIRYCEEHRLAGL 208 EG I G TD+ E A+ + + +Q+ N+L + + + E +A + Sbjct: 140 EGLIGMGGIALGPETDVAEEALEAVSHSEVEAVQFVYNMLEQEPGYTIAAWARERGVAAV 199 Query: 209 NRSPLGMGLLSGKYRPGDRMPEGDIRG-QRIEWMQY-YRDGRPNETLLEKLEAVREILTR 266 R P G+L P + D R +R W ++ +R + LLE L Sbjct: 200 ARVPHAGGVLDESITPSEAEKLSDHRSLRRRGWYRWAFRVYGRMKPLLEGLPGTPG---- 255 Query: 267 DGRSLVQGAIAWLWAKSPVN 286 Q AIA++ + +PV+ Sbjct: 256 ------QKAIAFILSSAPVD 269 >gi|14601748|ref|NP_148289.1| oxidoreductase [Aeropyrum pernix K1] Length = 272 Score = 60.8 bits (146), Expect = 4e-11 Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 30/192 (15%) Query: 3 RTLGRSGITVSALGLGCWPMGGVAYRDEKPDGYAGADDRESIRAIHAAIDAGITFFDVAD 62 + +G++ +SA+GLG W A RD Y+ A + + AI+ GI D A+ Sbjct: 12 KPIGKTKERLSAVGLGTW-----AIRD-----YSSA-----LESYVYAIERGINHIDTAE 56 Query: 63 CYGAGHGEEVLGKALKG-RRDRVVIGTKFGNLFNESTRTLQGENVSPGYIRRALEASLRR 121 YGAG E +GK L+ RDRV + TK L+ R P +A AS R Sbjct: 57 MYGAGEAERFVGKVLRSVGRDRVYVVTK---LYPFRFR-------DPDEAVKAARASAER 106 Query: 122 LKTDYIDVYQIHTWSMNLADVGPCLDTLDALVDEGKIRTYG---WSTDLLEGAMLIAARP 178 + Y+D+ IH W + + +L+A+ + G R G +S + LE A+ + Sbjct: 107 MGVSYVDIILIH-WPDPQTPIKDQVKSLEAIAEAGLARYIGVSNFSKEQLEEALTATKKH 165 Query: 179 KASVMQYQCNIL 190 + V Q + ++L Sbjct: 166 EIVVNQVKYSVL 177 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 374,569 Number of Sequences: 1700 Number of extensions: 18361 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 3 length of query: 325 length of database: 492,079 effective HSP length: 77 effective length of query: 248 effective length of database: 361,179 effective search space: 89572392 effective search space used: 89572392 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719318|ref|YP_003874850.1| hypothetical protein STHERM_c16370 [Spirochaeta thermophila DSM 6192] (275 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 255,636 Number of Sequences: 1700 Number of extensions: 9785 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 275 length of database: 492,079 effective HSP length: 76 effective length of query: 199 effective length of database: 362,879 effective search space: 72212921 effective search space used: 72212921 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719319|ref|YP_003874851.1| hypothetical protein STHERM_c16380 [Spirochaeta thermophila DSM 6192] (790 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431810|ref|NP_148510.2| hypothetical protein APE_2279.1 [A... 49 4e-07 gi|118431492|ref|NP_147998.2| replication factor C large subunit... 45 7e-06 gi|118431889|ref|NP_148637.2| cell division protein CDC48 [Aerop... 41 1e-04 >gi|118431810|ref|NP_148510.2| hypothetical protein APE_2279.1 [Aeropyrum pernix K1] Length = 634 Score = 49.3 bits (116), Expect = 4e-07 Identities = 29/66 (43%), Positives = 36/66 (54%) Query: 687 GPSAGITMASALLSLVAERKVRPQLAMTGELSLTGSVLPIGGLKEKVIAAKRARVKEIII 746 GPSAG+ MA A SL+ A TG + SV P+GGLKEK+ AA + K +I Sbjct: 111 GPSAGLAMALATYSLLTTGSCLDGYAATGMILPDTSVGPVGGLKEKLEAAASSGAKVFLI 170 Query: 747 PKSNEK 752 P EK Sbjct: 171 PHGQEK 176 >gi|118431492|ref|NP_147998.2| replication factor C large subunit [Aeropyrum pernix K1] Length = 479 Score = 45.1 bits (105), Expect = 7e-06 Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 23/203 (11%) Query: 360 LVGPPGVGKTSIGKSIARALGRKFFRFSVGGMRDEAEIKGHRRTYIGAMPGKIIQGLKIV 419 L GPPGVGKTS+ ++IA + + R ++I+ +GA K + + Sbjct: 54 LYGPPGVGKTSLVEAIASEFNLEMIELNASDYRRRSDIE----RIVGAASRK-----RSM 104 Query: 420 KTKNPVFMIDEIDKLGVSFQGDPASALLEVLDPEQN---VAFRDHYLDVPFDISKVLFIA 476 + V ++DE+D + ALL V+ +N + D + D + +V + Sbjct: 105 FKRGVVILLDEVDGINPREDAGGIEALLSVIKTTENPIVMTANDPWKDFLRPLREVSLMV 164 Query: 477 TANTLDTIPRPLLDRMEVIRLSGYIEEEKIAIAR---RYLIPRSLEEHGLAKDAVKYTTP 533 RPL V L E E+I R RY+ RS + A + ++ Sbjct: 165 EF-------RPLTLTHIVAVLQRICEAERIECEREALRYIAERSEGDLRSAINDLQAVAE 217 Query: 534 GLRAIIRGYAREAGVRNLEKAID 556 G + ARE VR EK+ID Sbjct: 218 GYGRVTLTLAREI-VRGREKSID 239 >gi|118431889|ref|NP_148637.2| cell division protein CDC48 [Aeropyrum pernix K1] Length = 737 Score = 41.2 bits (95), Expect = 1e-04 Identities = 69/299 (23%), Positives = 121/299 (40%), Gaps = 62/299 (20%) Query: 332 GLEDVKERILEFLA--VRKLKQETKGSI-----ICLVGPPGVGKTSIGKSIARALGRKFF 384 GLEDVK+ + E + ++ + T+ I + L GPPG GKT + K++A G F Sbjct: 465 GLEDVKQELREVVEWPLKHPEAFTRMGIRPPRGVLLFGPPGTGKTLLAKAVATESGANF- 523 Query: 385 RFSVGGMRDEAEIKGHRRTYIGAMPGKIIQGLKIVKTKNPVFMIDEIDKLGVSFQGDPAS 444 +V G ++ G I + K Q V DEID + D + Sbjct: 524 -IAVRGPEILSKWVGESERAIREIFAKARQHAP------AVVFFDEIDAIAPVRGTDVGT 576 Query: 445 ALLEVLDPEQNVAFRDHYLDVPFDISKVLFIATANTLDTI-----------------PRP 487 + E + V+ +D D+ V+ IA N D + P Sbjct: 577 RVTERI-----VSQLLTEIDGVSDLHDVVVIAATNRPDMVDPALMRPGRLEKMIYVPPPD 631 Query: 488 LLDRMEVIRLSGYIEEEKIAIARRYLIPRSLEEHGLAKDAVKYTTPGLRAIIRGYAREAG 547 R+E++R+ R+ + ++ +A+ YT + A++ REA Sbjct: 632 FSSRLEILRIH----------TRKVPLAEDVDLAEIARRTEGYTGADIEALV----REAS 677 Query: 548 VRNLEKAIDKIHRRVAKKLVME--ELSQEELPVTITPENVETY---LDKPLYPEEETKR 601 + L + I+ A ++ M E++ +++ ++TP+ VE Y L+ +EE KR Sbjct: 678 LAALREDIN------AAEVSMRHFEVALKKVKPSVTPQMVEYYKRWLETVKQRQEEVKR 730 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 806,530 Number of Sequences: 1700 Number of extensions: 38222 Number of successful extensions: 238 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 234 Number of HSP's gapped (non-prelim): 5 length of query: 790 length of database: 492,079 effective HSP length: 84 effective length of query: 706 effective length of database: 349,279 effective search space: 246590974 effective search space used: 246590974 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719320|ref|YP_003874852.1| hypothetical protein STHERM_c16390 [Spirochaeta thermophila DSM 6192] (282 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 332,609 Number of Sequences: 1700 Number of extensions: 16077 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 282 length of database: 492,079 effective HSP length: 76 effective length of query: 206 effective length of database: 362,879 effective search space: 74753074 effective search space used: 74753074 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719321|ref|YP_003874853.1| hypothetical protein STHERM_c16400 [Spirochaeta thermophila DSM 6192] (161 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 142,787 Number of Sequences: 1700 Number of extensions: 5718 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 161 length of database: 492,079 effective HSP length: 70 effective length of query: 91 effective length of database: 373,079 effective search space: 33950189 effective search space used: 33950189 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719322|ref|YP_003874854.1| hypothetical protein STHERM_c16410 [Spirochaeta thermophila DSM 6192] (414 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 433,458 Number of Sequences: 1700 Number of extensions: 20095 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 414 length of database: 492,079 effective HSP length: 79 effective length of query: 335 effective length of database: 357,779 effective search space: 119855965 effective search space used: 119855965 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719323|ref|YP_003874855.1| sialic acid-specific 9-O-acetylesterase [Spirochaeta thermophila DSM 6192] (637 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.142 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 809,832 Number of Sequences: 1700 Number of extensions: 42750 Number of successful extensions: 113 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113 Number of HSP's gapped (non-prelim): 0 length of query: 637 length of database: 492,079 effective HSP length: 83 effective length of query: 554 effective length of database: 350,979 effective search space: 194442366 effective search space used: 194442366 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719324|ref|YP_003874856.1| cellodextrinase [Spirochaeta thermophila DSM 6192] (732 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 725,619 Number of Sequences: 1700 Number of extensions: 32282 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 0 length of query: 732 length of database: 492,079 effective HSP length: 84 effective length of query: 648 effective length of database: 349,279 effective search space: 226332792 effective search space used: 226332792 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719325|ref|YP_003874857.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (298 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 333,968 Number of Sequences: 1700 Number of extensions: 16810 Number of successful extensions: 72 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72 Number of HSP's gapped (non-prelim): 0 length of query: 298 length of database: 492,079 effective HSP length: 76 effective length of query: 222 effective length of database: 362,879 effective search space: 80559138 effective search space used: 80559138 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719326|ref|YP_003874858.1| ketol-acid reductoisomerase [Spirochaeta thermophila DSM 6192] (490 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 510,357 Number of Sequences: 1700 Number of extensions: 23692 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 0 length of query: 490 length of database: 492,079 effective HSP length: 80 effective length of query: 410 effective length of database: 356,079 effective search space: 145992390 effective search space used: 145992390 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719327|ref|YP_003874859.1| hypothetical protein STHERM_c16460 [Spirochaeta thermophila DSM 6192] (142 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 144,342 Number of Sequences: 1700 Number of extensions: 5808 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 142 length of database: 492,079 effective HSP length: 69 effective length of query: 73 effective length of database: 374,779 effective search space: 27358867 effective search space used: 27358867 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719328|ref|YP_003874860.1| lactoylglutathione lyase-like lyase [Spirochaeta thermophila DSM 6192] (148 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 188,752 Number of Sequences: 1700 Number of extensions: 9893 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 148 length of database: 492,079 effective HSP length: 69 effective length of query: 79 effective length of database: 374,779 effective search space: 29607541 effective search space used: 29607541 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719329|ref|YP_003874861.1| hypothetical protein STHERM_c16480 [Spirochaeta thermophila DSM 6192] (287 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 220,622 Number of Sequences: 1700 Number of extensions: 8149 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 0 length of query: 287 length of database: 492,079 effective HSP length: 76 effective length of query: 211 effective length of database: 362,879 effective search space: 76567469 effective search space used: 76567469 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719330|ref|YP_003874862.1| hypothetical protein STHERM_c16490 [Spirochaeta thermophila DSM 6192] (190 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 112,677 Number of Sequences: 1700 Number of extensions: 3229 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 190 length of database: 492,079 effective HSP length: 72 effective length of query: 118 effective length of database: 369,679 effective search space: 43622122 effective search space used: 43622122 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719331|ref|YP_003874863.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (183 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 174,920 Number of Sequences: 1700 Number of extensions: 7330 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 183 length of database: 492,079 effective HSP length: 72 effective length of query: 111 effective length of database: 369,679 effective search space: 41034369 effective search space used: 41034369 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719332|ref|YP_003874864.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta thermophila DSM 6192] (1078 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,041,898 Number of Sequences: 1700 Number of extensions: 47040 Number of successful extensions: 170 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 170 Number of HSP's gapped (non-prelim): 0 length of query: 1078 length of database: 492,079 effective HSP length: 87 effective length of query: 991 effective length of database: 344,179 effective search space: 341081389 effective search space used: 341081389 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719333|ref|YP_003874865.1| 3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Spirochaeta thermophila DSM 6192] (245 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.141 0.491 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 246,569 Number of Sequences: 1700 Number of extensions: 10347 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 245 length of database: 492,079 effective HSP length: 74 effective length of query: 171 effective length of database: 366,279 effective search space: 62633709 effective search space used: 62633709 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719334|ref|YP_003874866.1| hypothetical protein STHERM_c16550 [Spirochaeta thermophila DSM 6192] (325 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601230|ref|NP_147763.1| dTDP-glucose 4,6-dehydratase [Aerop... 41 5e-05 >gi|14601230|ref|NP_147763.1| dTDP-glucose 4,6-dehydratase [Aeropyrum pernix K1] Length = 330 Score = 40.8 bits (94), Expect = 5e-05 Identities = 45/172 (26%), Positives = 66/172 (38%), Gaps = 12/172 (6%) Query: 67 DAVVHCAA--YVSISGGHGGLVWRVNVEGVRNVLNAAA-RVGVWRVVHVSSIHAFREC-- 121 D VV+ AA +V S R N+ GV +L A R+ ++HVS+ + + Sbjct: 73 DVVVNFAAETHVDRSINEPAPFMRTNIIGVFTILEAIRKRIDQIVLLHVSTDEVYGDLWN 132 Query: 122 -GEVVDEKAPLVDGEGSVYDRSKXXXXXXXXXXXXXXXXXXXVC-PTGIIGPKDYKPSRM 179 G+ E PL S Y SK + P GP + + Sbjct: 133 TGKEATESDPL--NPSSPYSASKASGDLLIKAYGRTYGLKYRIVRPCNNYGPYQHVEKLI 190 Query: 180 GRFFIALTRGRVPALVEGGF---DWVDVRDVAEGVVAALERGRRGERYVLSG 228 R I + G+ P + G DW+ V D A + LE+G GE Y + G Sbjct: 191 PRTIIRILHGKPPVIYGDGSQIRDWLYVEDTARAIHVVLEKGVDGEIYNVCG 242 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 298,681 Number of Sequences: 1700 Number of extensions: 11732 Number of successful extensions: 27 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 1 length of query: 325 length of database: 492,079 effective HSP length: 77 effective length of query: 248 effective length of database: 361,179 effective search space: 89572392 effective search space used: 89572392 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719335|ref|YP_003874867.1| hypothetical protein STHERM_c16560 [Spirochaeta thermophila DSM 6192] (177 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 174,622 Number of Sequences: 1700 Number of extensions: 7429 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 177 length of database: 492,079 effective HSP length: 71 effective length of query: 106 effective length of database: 371,379 effective search space: 39366174 effective search space used: 39366174 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719336|ref|YP_003874868.1| formyltetrahydrofolate deformylase [Spirochaeta thermophila DSM 6192] (307 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.141 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 269,746 Number of Sequences: 1700 Number of extensions: 10305 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 307 length of database: 492,079 effective HSP length: 77 effective length of query: 230 effective length of database: 361,179 effective search space: 83071170 effective search space used: 83071170 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719337|ref|YP_003874869.1| hypothetical protein STHERM_c16580 [Spirochaeta thermophila DSM 6192] (125 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.143 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 143,606 Number of Sequences: 1700 Number of extensions: 5926 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 0 length of query: 125 length of database: 492,079 effective HSP length: 67 effective length of query: 58 effective length of database: 378,179 effective search space: 21934382 effective search space used: 21934382 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719338|ref|YP_003874870.1| hypothetical protein STHERM_c16590 [Spirochaeta thermophila DSM 6192] (133 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,838 Number of Sequences: 1700 Number of extensions: 2228 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 133 length of database: 492,079 effective HSP length: 68 effective length of query: 65 effective length of database: 376,479 effective search space: 24471135 effective search space used: 24471135 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719339|ref|YP_003874871.1| hypothetical protein STHERM_c16600 [Spirochaeta thermophila DSM 6192] (104 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.143 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,024 Number of Sequences: 1700 Number of extensions: 3865 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 104 length of database: 492,079 effective HSP length: 64 effective length of query: 40 effective length of database: 383,279 effective search space: 15331160 effective search space used: 15331160 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719340|ref|YP_003874872.1| OmpA family protein [Spirochaeta thermophila DSM 6192] (826 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 890,469 Number of Sequences: 1700 Number of extensions: 42202 Number of successful extensions: 97 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97 Number of HSP's gapped (non-prelim): 0 length of query: 826 length of database: 492,079 effective HSP length: 85 effective length of query: 741 effective length of database: 347,579 effective search space: 257556039 effective search space used: 257556039 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719341|ref|YP_003874873.1| hypothetical protein STHERM_c16620 [Spirochaeta thermophila DSM 6192] (514 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 518,084 Number of Sequences: 1700 Number of extensions: 23430 Number of successful extensions: 79 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79 Number of HSP's gapped (non-prelim): 0 length of query: 514 length of database: 492,079 effective HSP length: 81 effective length of query: 433 effective length of database: 354,379 effective search space: 153446107 effective search space used: 153446107 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719342|ref|YP_003874874.1| pyruvate-flavodoxin oxidoreductase [Spirochaeta thermophila DSM 6192] (1195 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,169,016 Number of Sequences: 1700 Number of extensions: 52305 Number of successful extensions: 202 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 202 Number of HSP's gapped (non-prelim): 0 length of query: 1195 length of database: 492,079 effective HSP length: 87 effective length of query: 1108 effective length of database: 344,179 effective search space: 381350332 effective search space used: 381350332 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719343|ref|YP_003874875.1| flavoredoxin [Spirochaeta thermophila DSM 6192] (172 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.137 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 159,638 Number of Sequences: 1700 Number of extensions: 6209 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 172 length of database: 492,079 effective HSP length: 71 effective length of query: 101 effective length of database: 371,379 effective search space: 37509279 effective search space used: 37509279 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719344|ref|YP_003874876.1| hypothetical protein STHERM_c16650 [Spirochaeta thermophila DSM 6192] (116 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.140 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 135,811 Number of Sequences: 1700 Number of extensions: 6383 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 116 length of database: 492,079 effective HSP length: 66 effective length of query: 50 effective length of database: 379,879 effective search space: 18993950 effective search space used: 18993950 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719345|ref|YP_003874877.1| ribulose-phosphate 3-epimerase [Spirochaeta thermophila DSM 6192] (215 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 217,519 Number of Sequences: 1700 Number of extensions: 9782 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 215 length of database: 492,079 effective HSP length: 73 effective length of query: 142 effective length of database: 367,979 effective search space: 52253018 effective search space used: 52253018 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719346|ref|YP_003874878.1| ribose 5-phosphate isomerase A [Spirochaeta thermophila DSM 6192] (229 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600875|ref|NP_147400.1| ribose 5-phosphate isomerase [Aerop... 125 9e-31 >gi|14600875|ref|NP_147400.1| ribose 5-phosphate isomerase [Aeropyrum pernix K1] Length = 237 Score = 125 bits (314), Expect = 9e-31 Identities = 81/213 (38%), Positives = 119/213 (55%), Gaps = 14/213 (6%) Query: 20 VGLGTGSTAVWAIRRIGEHMREGRLSGI---VGVATSFASEMEAHRLGIPVRSLNDPEIG 76 +G+GTG T + +RE G+ V V +SF + +E LG S+ DP + Sbjct: 28 LGVGTGRTVM-------RFLREASARGVEPGVAVPSSFETAVELAGLGW---SVGDPRVY 77 Query: 77 GEVDLAIDGADEVDPTL-HLVKGGGGALFREKLVAYNARRFVVVVEECKLVPHIGTGFPI 135 V++ +DGADE +P ++VKGGGGAL EK+++ ++ + +V E +LV +G P+ Sbjct: 78 RGVNVYVDGADEAEPGRGYMVKGGGGALLGEKILSSRSKLNIFIVGEDRLVGRLGEKTPV 137 Query: 136 PVEVVPEARACVLKALEALGAEWTIRHGSGKQGPVVTDNGNLLVDVRFPAPVDPEEMEIR 195 PVEV P + VL +LE LG +R GK+GPVV+D G ++VD+ DP +E Sbjct: 138 PVEVEPGFVSMVLASLEELGLNPRVRTSPGKRGPVVSDWGGVIVDLLTGPLEDPRGLESM 197 Query: 196 LGLIPGVYETGFFTRIRPTVCVGLPSGEVRTLG 228 L +PGV ETG F + + VGL S R LG Sbjct: 198 LRNVPGVRETGLFLGLADYIVVGLSSCGYRVLG 230 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 279,926 Number of Sequences: 1700 Number of extensions: 14274 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 1 length of query: 229 length of database: 492,079 effective HSP length: 74 effective length of query: 155 effective length of database: 366,279 effective search space: 56773245 effective search space used: 56773245 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719347|ref|YP_003874879.1| 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase [Spirochaeta thermophila DSM 6192] (755 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601803|ref|NP_148344.1| methionine synthase [Aeropyrum pern... 178 5e-46 gi|118431702|ref|NP_148345.2| methylcobalamin:homocysteine methy... 68 9e-13 >gi|14601803|ref|NP_148344.1| methionine synthase [Aeropyrum pernix K1] Length = 332 Score = 178 bits (451), Expect = 5e-46 Identities = 109/332 (32%), Positives = 170/332 (51%), Gaps = 13/332 (3%) Query: 423 FPTTTIGSFPQTPEIRKVRARFKRGEIXXXXXXXXXXXXXXXVIREQEALGLDVLVHGEP 482 FPTT +GS+P+ + + + GEI V+ + G+D++ GE Sbjct: 11 FPTTVVGSYPKIGPASEAIKKRRAGEISEEEFHRIARESIRMVVEDYIWAGVDIISDGEQ 70 Query: 483 ERNDMVEYFAELLPGYCTTTNGWVQSYGTRCVKPPIIYGDVHRSEPMTIRWITYAQSLTS 542 R DMV YFAE L GY WV+ + + PI+ G V PM I YA+S+++ Sbjct: 71 TREDMVVYFAERLEGY--REGDWVRVFDNVYFRKPIVAGRVRWVRPMIIEDWEYARSISA 128 Query: 543 -RPVKGMLTGPVTMLKWSFVRDDIPARDVAFQIALALRDEVADLEAQGITVIQIDEPAIR 601 RPVK ++TGP TML+WSF R++ F +A A+R E+ + A+G IQ+DEPA Sbjct: 129 GRPVKFIITGPYTMLEWSFDLHYGDRRELIFDLARAIRREIDEALARGAEYIQVDEPA-- 186 Query: 602 EGLPLRRTQWEEYLTWATDAFRLASSGAAPDTQIHTHMCYSDFEDIIEWIARLDADVISI 661 L ++E +A + G + H+CY + E I+ +I D + Sbjct: 187 ----LSTRPFKEEAELLKEALDIIFKGVGAKRIV--HICYGELERILPYILDYPVDQFDL 240 Query: 662 EASRSDMQLLEAFHRFDYPNDIGPGVYDVHSPRIPGIEEMYRLLKK--ALEVIAPGQLWV 719 E S+ +LL + Y +IG GV DVHS ++ + E+ + + ++++ P +++V Sbjct: 241 EMKNSNFRLLPYLKEYGYDKEIGYGVIDVHSFQVESVGEVKEAIDRLMKMDIVGPEKVYV 300 Query: 720 NPDCGLKTRAWEEVRPSLTNMVEAARRLRKEY 751 +PDCGLK + R L NMVEAAR R+E+ Sbjct: 301 DPDCGLKRLPRDVARAKLKNMVEAARLAREEW 332 >gi|118431702|ref|NP_148345.2| methylcobalamin:homocysteine methyltransferase [Aeropyrum pernix K1] Length = 336 Score = 67.8 bits (164), Expect = 9e-13 Identities = 68/310 (21%), Positives = 128/310 (41%), Gaps = 15/310 (4%) Query: 428 IGSFPQTPEIRKVRARFKRGEIXXXXXXXXXXXXXXXVIREQEALGLDVLVHGEPERNDM 487 +G +P++ +R+ R ++GEI VI Q + G +V G + +D+ Sbjct: 8 LGGYPRSRYVRRALRRLEQGEISAVELMGVLNQASSAVIGAQVSQGFPYVVDGMLDWHDI 67 Query: 488 VEYFAELLPGYCTTTNGWVQSYGTRCV-KPPIIYGDVHRSEPMTI-RWITYAQSLTSRPV 545 FAE T G ++ + + P+ G+ ++P+ R ++Y+Q + Sbjct: 68 FRPFAEAWRN--VTPTGLLRYFDNNFFYRIPLFTGEPEPTDPVLAPRVLSYSQVAEPAKL 125 Query: 546 KGMLTGPVTMLKWSFVRDDIPARDVAFQIALALRDEVADLEAQGITVIQIDEPAIREGLP 605 K ++ GPVT S I ++A IA L DEV G +Q+DEP + E Sbjct: 126 KVVVPGPVTFTLMSRNESGISDEELAEAIANLLADEVEKAVKAGAGFVQVDEPILSEPKA 185 Query: 606 LRRTQWEEYLTWATDAFRLASSGAAPDTQIHTHMCYSDFEDIIEWIARLDADVISIEASR 665 R + L A A +AS + +T + + Y ++ E + D + ++ Sbjct: 186 TR----DHALLAAELAGVIASRSGSAETMLSVYF-YPPKPEVYEALLEARVDYLMVDLVA 240 Query: 666 SDMQLLEAFHRFDYPNDIGPGVYDVHSPRIPGIEEMYRLLKKALEVIAPGQLWVNPDCGL 725 + + LE + GV D S +E++ +++ +E + P ++ L Sbjct: 241 AGSKGLEVITGKGAGEGLALGVIDARSIYSESLEKVEAPVRRIVESVKPEKII------L 294 Query: 726 KTRAWEEVRP 735 T W ++ P Sbjct: 295 TTSTWLDLIP 304 Score = 65.1 bits (157), Expect = 6e-12 Identities = 72/269 (26%), Positives = 121/269 (44%), Gaps = 42/269 (15%) Query: 89 HDLDLSFALARGDRERNIPALDMTKWFDTNYHYIVP----ELEDSSSI---RLAEHTRIE 141 HD+ FA A RN+ + ++FD N+ Y +P E E + + R+ ++++ Sbjct: 65 HDIFRPFAEAW----RNVTPTGLLRYFDNNFFYRIPLFTGEPEPTDPVLAPRVLSYSQVA 120 Query: 142 EQVHLARSLGYRVKATLPGPLTFLSLAR--------ETGERPRWSFADEVGKAYATLLSR 193 E L K +PGP+TF ++R E E ADEV KA Sbjct: 121 EPAKL--------KVVVPGPVTFTLMSRNESGISDEELAEAIANLLADEVEKA------- 165 Query: 194 LAPHCEWIQLEEPILATDLSSPQKEAWAS----IYAQLSDHTERILVACYFGPVGENIEL 249 + ++Q++EPIL+ ++ A+ + A S E +L ++ P E E Sbjct: 166 VKAGAGFVQVDEPILSEPKATRDHALLAAELAGVIASRSGSAETMLSVYFYPPKPEVYEA 225 Query: 250 LLSSGVRGIHLDLTR---EGVEVLSRIPEDRVVSLGVIDGRNVWRADLEAAARIVEPQVA 306 LL + V + +DL +G+EV++ ++LGVID R+++ LE V V Sbjct: 226 LLEARVDYLMVDLVAAGSKGLEVITGKGAGEGLALGVIDARSIYSESLEKVEAPVRRIVE 285 Query: 307 RRGDDKTMLSSSCSLLHVPIDLEL-ETAL 334 +K +L++S L +P L +TAL Sbjct: 286 SVKPEKIILTTSTWLDLIPYRYALRKTAL 314 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 779,076 Number of Sequences: 1700 Number of extensions: 34407 Number of successful extensions: 113 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 103 Number of HSP's gapped (non-prelim): 4 length of query: 755 length of database: 492,079 effective HSP length: 84 effective length of query: 671 effective length of database: 349,279 effective search space: 234366209 effective search space used: 234366209 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719348|ref|YP_003874880.1| hypothetical protein STHERM_c16690 [Spirochaeta thermophila DSM 6192] (492 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 481,125 Number of Sequences: 1700 Number of extensions: 21400 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 0 length of query: 492 length of database: 492,079 effective HSP length: 81 effective length of query: 411 effective length of database: 354,379 effective search space: 145649769 effective search space used: 145649769 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719349|ref|YP_003874881.1| hypothetical protein STHERM_c16700 [Spirochaeta thermophila DSM 6192] (393 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601295|ref|NP_147830.1| hypothetical protein APE_1260 [Aero... 126 8e-31 gi|118431758|ref|NP_148423.2| hypothetical protein APE_2156.1 [A... 58 5e-10 >gi|14601295|ref|NP_147830.1| hypothetical protein APE_1260 [Aeropyrum pernix K1] Length = 209 Score = 126 bits (317), Expect = 8e-31 Identities = 82/220 (37%), Positives = 114/220 (51%), Gaps = 20/220 (9%) Query: 169 MVQKLVVGQLATNAYVYVSQVTGKALLIDPGADAPRIVDWLEDLGILPSALLCTHGHIDH 228 ++++L +G L N YV + G+ L++DPG P +++ LE LG + THGH DH Sbjct: 3 ILERLSLGVLQVNTYV--AAAGGECLVVDPGG--PEVLEALERLGCRDIVVALTHGHFDH 58 Query: 229 VGAIGHLLDRLHHDRTIPVFLHEADLPLLEEAF-DLQRAWLHSAGIPTADLDRPPVSSIR 287 V + HL R V P + EA+ DL + G+P +D Sbjct: 59 VAGVEHLAARG------AVVAAHPQTPRVAEAYADLGVKMGYLKGVPRISVDVE------ 106 Query: 288 PLTDGKELDPWGLRL--LHTPGHSPGSICLYAPEEGVLFSGDTLFREGVGRTDLPGGSWE 345 L DG L GL L +HTPGHSP I LY G+ F+GD +FR +GR D+ G E Sbjct: 107 -LVDGSTLRAAGLSLKAIHTPGHSPDHIVLYDQARGLAFTGDLIFRGSIGRVDIALGDGE 165 Query: 346 ALERSIVERLYPLGDGIRVYPGHGPETTLGHEKGWNPFVR 385 A+ RS+ + L G R+ PGHGPETTL +E NPF++ Sbjct: 166 AMARSLARIVRELPRGTRLLPGHGPETTLEYEILHNPFLQ 205 >gi|118431758|ref|NP_148423.2| hypothetical protein APE_2156.1 [Aeropyrum pernix K1] Length = 304 Score = 57.8 bits (138), Expect = 5e-10 Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 10/146 (6%) Query: 191 GKALLIDPGADAP--RIVDWLEDLGILPSALLCTHGHIDHVGAIGHLLDRLHHDRTIPVF 248 G A +ID G R+ + L+ +G+ ++ TH H+DH A G ++ L D V+ Sbjct: 28 GDAAMIDSGPKTSWERVREELQSMGVRLRYVILTHIHLDHASAAGSIVRSL--DTVEAVY 85 Query: 249 LHEADLPLLEEAFDLQRAWLHSAGIPTADLDRP---PVSSIRPLTDGKELD-PWGLRL-- 302 +H + + L +A G +P P I DG+ L+ P G++L Sbjct: 86 VHPRGARHMADPERLWQASKQFLGDYADFFGKPEPVPEGKIVVPEDGEVLELPGGVKLHV 145 Query: 303 LHTPGHSPGSICLYAPEEGVLFSGDT 328 ++TPGH+ + Y P+EGV+F+GD+ Sbjct: 146 IYTPGHASHHMSFYLPQEGVMFTGDS 171 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.141 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 472,684 Number of Sequences: 1700 Number of extensions: 22891 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 2 length of query: 393 length of database: 492,079 effective HSP length: 79 effective length of query: 314 effective length of database: 357,779 effective search space: 112342606 effective search space used: 112342606 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719350|ref|YP_003874882.1| hypothetical protein STHERM_c16710 [Spirochaeta thermophila DSM 6192] (134 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 118,916 Number of Sequences: 1700 Number of extensions: 3910 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 134 length of database: 492,079 effective HSP length: 68 effective length of query: 66 effective length of database: 376,479 effective search space: 24847614 effective search space used: 24847614 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719351|ref|YP_003874883.1| DksA/TraR family C4 zinc finger domain-containing protein [Spirochaeta thermophila DSM 6192] (119 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,261 Number of Sequences: 1700 Number of extensions: 3302 Number of successful extensions: 7 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 119 length of database: 492,079 effective HSP length: 66 effective length of query: 53 effective length of database: 379,879 effective search space: 20133587 effective search space used: 20133587 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719352|ref|YP_003874884.1| translation initiation factor IF-1 [Spirochaeta thermophila DSM 6192] (100 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 109,664 Number of Sequences: 1700 Number of extensions: 4585 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 100 length of database: 492,079 effective HSP length: 64 effective length of query: 36 effective length of database: 383,279 effective search space: 13798044 effective search space used: 13798044 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719353|ref|YP_003874885.1| hypothetical protein STHERM_c16740 [Spirochaeta thermophila DSM 6192] (111 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106,543 Number of Sequences: 1700 Number of extensions: 4387 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 111 length of database: 492,079 effective HSP length: 65 effective length of query: 46 effective length of database: 381,579 effective search space: 17552634 effective search space used: 17552634 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719354|ref|YP_003874886.1| hypothetical protein STHERM_c16750 [Spirochaeta thermophila DSM 6192] (573 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 616,926 Number of Sequences: 1700 Number of extensions: 27427 Number of successful extensions: 79 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79 Number of HSP's gapped (non-prelim): 0 length of query: 573 length of database: 492,079 effective HSP length: 82 effective length of query: 491 effective length of database: 352,679 effective search space: 173165389 effective search space used: 173165389 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719355|ref|YP_003874887.1| hypothetical protein STHERM_c16760 [Spirochaeta thermophila DSM 6192] (198 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 209,088 Number of Sequences: 1700 Number of extensions: 8974 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 198 length of database: 492,079 effective HSP length: 72 effective length of query: 126 effective length of database: 369,679 effective search space: 46579554 effective search space used: 46579554 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719356|ref|YP_003874888.1| von Willebrand factor type A [Spirochaeta thermophila DSM 6192] (331 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431122|ref|NP_147355.2| hypothetical protein APE_0605.1 [A... 51 5e-08 >gi|118431122|ref|NP_147355.2| hypothetical protein APE_0605.1 [Aeropyrum pernix K1] Length = 195 Score = 50.8 bits (120), Expect = 5e-08 Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 13/189 (6%) Query: 86 RNADIVLLFDISRSML--VRDVPPSRLEVAKEIALMLVSRI---SGARWGVVAFKGKXXX 140 R D+V D+S+SM + S+L+V+ I M SRI G+R G+V F + Sbjct: 8 RGYDVVWAIDLSKSMARTAGGLGASKLKVSSGIIAMASSRILSRPGSRVGIVGFHDRAFP 67 Query: 141 XXXXXXXXXXXXXAIGLLTPVLLRSPGTDVASGLSRALEAFPQQSNRQRLVILLSDGEAL 200 ++ LL V S G D G+ +++ + S R+R V+++SDG Sbjct: 68 ILPSTDNYRRVLDSLTLLRAVGEGSAGGD---GIVESVKML-RGSGRERHVVMVSDGGFN 123 Query: 201 TGEIGPVLEL-ARNLGVAVHTVGIGTESGGPVPLEGEDVLKKPSGEPVISRLDASLLKR- 258 TG P+ + A N+GV +H + +G + G V E+ + G I + +K Sbjct: 124 TGIPIPLATIYALNMGVRLHFIIVGGQPGDVVKRSVEEAASRTGGRVYIVAGEGDDMKAA 183 Query: 259 --IAEITGG 265 +A GG Sbjct: 184 VGVARAAGG 192 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 277,543 Number of Sequences: 1700 Number of extensions: 11602 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 1 length of query: 331 length of database: 492,079 effective HSP length: 77 effective length of query: 254 effective length of database: 361,179 effective search space: 91739466 effective search space used: 91739466 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719357|ref|YP_003874889.1| batA protein [Spirochaeta thermophila DSM 6192] (332 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431122|ref|NP_147355.2| hypothetical protein APE_0605.1 [A... 45 3e-06 >gi|118431122|ref|NP_147355.2| hypothetical protein APE_0605.1 [Aeropyrum pernix K1] Length = 195 Score = 45.1 bits (105), Expect = 3e-06 Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 12/185 (6%) Query: 92 IVIALDVSPSMG-AMDIPGRQRFQVAREVIR---GFVRSYPHMAVGLVLFGKEALLEVPP 147 +V A+D+S SM G + +V+ +I + S P VG+V F A +P Sbjct: 12 VVWAIDLSKSMARTAGGLGASKLKVSSGIIAMASSRILSRPGSRVGIVGFHDRAFPILPS 71 Query: 148 TIDVEYFLERLEAVRLFSLGDGTALGMGVGTSLLHLSRVNASFRAVVILTDGKNTTGEIL 207 T + L+ L +R ++G+G+A G G+ S+ L R + R VV+++DG TG + Sbjct: 72 TDNYRRVLDSLTLLR--AVGEGSAGGDGIVESVKML-RGSGRERHVVMVSDGGFNTGIPI 128 Query: 208 PETAAEMARELGIPLFTVGVGSDR----PVSLDVIDPSTGTRYAGVLEEGYDEETLRRIA 263 P A A +G+ L + VG S++ TG R V EG D + +A Sbjct: 129 P-LATIYALNMGVRLHFIIVGGQPGDVVKRSVEEAASRTGGRVYIVAGEGDDMKAAVGVA 187 Query: 264 EISGG 268 +GG Sbjct: 188 RAAGG 192 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 356,646 Number of Sequences: 1700 Number of extensions: 16509 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 1 length of query: 332 length of database: 492,079 effective HSP length: 77 effective length of query: 255 effective length of database: 361,179 effective search space: 92100645 effective search space used: 92100645 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719358|ref|YP_003874890.1| hypothetical protein STHERM_c16790 [Spirochaeta thermophila DSM 6192] (332 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 303,406 Number of Sequences: 1700 Number of extensions: 11974 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 332 length of database: 492,079 effective HSP length: 77 effective length of query: 255 effective length of database: 361,179 effective search space: 92100645 effective search space used: 92100645 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719359|ref|YP_003874891.1| MoxR protein [Spirochaeta thermophila DSM 6192] (289 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431406|ref|NP_147867.2| hypothetical protein APE_1319.1 [A... 46 1e-06 gi|118430892|ref|NP_146985.2| hypothetical protein APE_0129.1 [A... 42 2e-05 >gi|118431406|ref|NP_147867.2| hypothetical protein APE_1319.1 [Aeropyrum pernix K1] Length = 415 Score = 45.8 bits (107), Expect = 1e-06 Identities = 28/89 (31%), Positives = 39/89 (43%) Query: 37 GMDFQEVRTYVPGDDVRLIDWNVTSRFGEPHTKVFREERELVLFLVVDVSRSMRFGSNQY 96 G +F E+R Y PGDD R+I W T+R G + E L L +V+D S M G Sbjct: 194 GYEFLELREYQPGDDPRMIHWPSTARAGTLVVRETAMETRLNLTIVLDASGEMWIGGPGA 253 Query: 97 SKFDYLEILFSIFSLVTLENNDRVGALFF 125 S D+ L + + E+ F Sbjct: 254 SPIDHAARLTLALAALAWESGGTASVFLF 282 >gi|118430892|ref|NP_146985.2| hypothetical protein APE_0129.1 [Aeropyrum pernix K1] Length = 371 Score = 41.6 bits (96), Expect = 2e-05 Identities = 16/33 (48%), Positives = 22/33 (66%) Query: 34 KGQGMDFQEVRTYVPGDDVRLIDWNVTSRFGEP 66 +G G+D++ R Y PGDD R I+W +T R G P Sbjct: 207 EGSGLDYRSFREYQPGDDPRSIEWKLTGRRGAP 239 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.144 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 247,592 Number of Sequences: 1700 Number of extensions: 9981 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 2 length of query: 289 length of database: 492,079 effective HSP length: 76 effective length of query: 213 effective length of database: 362,879 effective search space: 77293227 effective search space used: 77293227 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719360|ref|YP_003874892.1| hypothetical protein STHERM_c16810 [Spirochaeta thermophila DSM 6192] (329 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601331|ref|NP_147866.1| hypothetical protein APE_1317 [Aero... 276 7e-76 gi|14600469|ref|NP_146984.1| hypothetical protein APE_0127 [Aero... 271 2e-74 gi|118431307|ref|NP_147676.2| hypothetical protein APE_1035.1 [A... 67 5e-13 gi|118431784|ref|NP_148466.2| CoxD-like protein [Aeropyrum perni... 49 2e-07 >gi|14601331|ref|NP_147866.1| hypothetical protein APE_1317 [Aeropyrum pernix K1] Length = 306 Score = 276 bits (705), Expect = 7e-76 Identities = 146/313 (46%), Positives = 201/313 (64%), Gaps = 8/313 (2%) Query: 17 QELLSKCREEFSRVVVGQEAMFEGLMMGLLAGGHVLLEGVPGLAKTLAVKTLAGILDASF 76 +++ ++ EE S+V+VG+E ++ L A GHVLLEGVPG+AKT + +A F Sbjct: 2 EKVFARISEEVSKVIVGKEREIRLVLAALAARGHVLLEGVPGVAKTTMARAIARATGLRF 61 Query: 77 KRIQFTPDLLPADLTGTLVYRQQTGEFVVRRGPVFSNIVLADEINRAPAKVQSALLEAMQ 136 RIQFTPD+LP+D+ GT+VY Q+TGEFV RRGPVF+N+VLADE+NRA + QSA LEAMQ Sbjct: 62 SRIQFTPDMLPSDVIGTMVYDQRTGEFVFRRGPVFANVVLADEVNRANPRTQSAFLEAMQ 121 Query: 137 ERQVTIGDTSYALPDPFFVLATQNPIEQEGTYPLPEAQLDRFLLKILIGYPSPQEELEIL 196 E QVT+ ++ LP PF VLAT NPIE EG YPLPEAQLDRF+ ++++G+PS +E +EI+ Sbjct: 122 EGQVTVWGETHRLPSPFIVLATMNPIELEGVYPLPEAQLDRFMARVVVGHPSLEELVEIM 181 Query: 197 RRKGIEEDVKVKQVLFKTDLKRLQEIAQSVLVDPRIEEYIVSIVAATRQRSKSRTSYARF 256 + + V+ V D+ QE V VD I+ YI IV T + Sbjct: 182 EKYRSITEFPVEPVARPEDIVAAQEAVWKVHVDKNIKLYIARIVEETHKHPG-------- 233 Query: 257 IEFGASPRATIALYRCAKIKALLDGRGFVIPEDVKDVAYPVLRHRVVLSYEAEAEDMDAE 316 + G SPRA +++ A+ ALLDG G+V P+ VK+ A L HR++L+ EA+ E + E Sbjct: 234 VSLGGSPRAALSIMMLARGLALLDGLGYVTPDHVKEAARAALPHRLILTTEAKLEGLKPE 293 Query: 317 RVIEALLEQVPVP 329 V+E +L V P Sbjct: 294 SVVEDVLSSVETP 306 >gi|14600469|ref|NP_146984.1| hypothetical protein APE_0127 [Aeropyrum pernix K1] Length = 314 Score = 271 bits (692), Expect = 2e-74 Identities = 147/320 (45%), Positives = 207/320 (64%), Gaps = 11/320 (3%) Query: 10 EVKVGRAQELLSKCREEFSRVVVGQEAMFEGLMMGLLAGGHVLLEGVPGLAKTLAVKTLA 69 + ++G + E+L++ + E +R V+G+E + + ++A GH+L+EGVPG+AKT K LA Sbjct: 6 QAELGWSLEVLARVKREVARFVIGKEREVKLALATMIAKGHLLVEGVPGVAKTTLAKALA 65 Query: 70 GILDASFKRIQFTPDLLPADLTGTLVYRQQTGEFVVRRGPVFSNIVLADEINRAPAKVQS 129 G F RIQFTPD LP+D+ GT VY FV RRGPVF+N+VLADE+NRA + QS Sbjct: 66 GAFGLRFSRIQFTPDTLPSDVIGTHVY--VGNGFVFRRGPVFANVVLADEVNRANPRTQS 123 Query: 130 ALLEAMQERQVTIGDTSYALPDPFFVLATQNPIEQEGTYPLPEAQLDRFLLKILIGYPSP 189 A LEAMQE QVT+ ++ LP PF VLAT NPIE EG YPLPEAQLDRF+ +I +GYP+ Sbjct: 124 AFLEAMQEGQVTVWGETHRLPSPFIVLATMNPIELEGVYPLPEAQLDRFMARIRLGYPTR 183 Query: 190 QEELEILRRKGIEEDVKVKQVLFKTDLKRLQEIAQSVLVDPRIEEYIVSIVAATRQRSKS 249 EE++I+ + ED+ V+ DLKRLQ+ A+ + VD ++ EYI IV TR+ + Sbjct: 184 VEEIKIIEKGDEVEDLNVEPAASPEDLKRLQDTARRIYVDRKLVEYIADIVRETRRIEE- 242 Query: 250 RTSYARFIEFGASPRATIALYRCAKIKALLDGRGFVIPEDVKDVAYPVLRHRVVLSYEAE 309 +E GASPRA I + + ++ AL+ GR F P+DVK+ A L HR+ L + Sbjct: 243 -------VEIGASPRAGIHILKLSRALALMSGRDFATPDDVKEAARAALPHRLKLR-KVY 294 Query: 310 AEDMDAERVIEALLEQVPVP 329 +E ++E +L++VP P Sbjct: 295 ISKHSSEGLVEDVLKKVPPP 314 >gi|118431307|ref|NP_147676.2| hypothetical protein APE_1035.1 [Aeropyrum pernix K1] Length = 379 Score = 67.4 bits (163), Expect = 5e-13 Identities = 79/328 (24%), Positives = 143/328 (43%), Gaps = 43/328 (13%) Query: 8 DLEVKVGRAQELLSKCREEFSRVVVGQEAMFEGLMMGLLAGGHVLLEGVPGLAKTLAVKT 67 D E G A++ L + + F VG+ L + L++G HV++ G PG AK+ + Sbjct: 2 DFETASGLARKFLQELEKPF----VGRHEQALMLTLALISGEHVVMIGEPGTAKSALARR 57 Query: 68 LAGILDASFKRIQFTPDLLPADLTGTLVYRQ-QTGEFV-VRRGPV-FSNIVLADEINRAP 124 A +L+A F + T P++L G L R + G+++ + RG + + I DE+ A Sbjct: 58 AAELLNARFFKYLLTRFTEPSELFGPLDLRSLREGKYIRITRGKLPEAEIAFLDEVFNAN 117 Query: 125 AKVQSALLEAMQERQVTIGDTSYALPDPFFVLATQNPIEQEGTYPLPEAQLDRFLLKILI 184 + V + LL MQER V G + +P + ++ N + +E P EA DRF+ + + Sbjct: 118 SAVLNTLLSLMQERIVYDGYSEIRVP-IWSIIGASNRVPEE---PELEALYDRFVYRDYV 173 Query: 185 GYPSPQEELEIL------RRKGIEEDVKVKQVLFKTDLKRLQEIAQSVLVDPRIEEYIVS 238 P Q+ + L KG E K ++ +L+ + + SV V P ++ ++ Sbjct: 174 -KPLDQDHWDKLLDAAWSLEKG--EYEAAKPIMSMAELREINKHVMSVDVSP-VKPSLIR 229 Query: 239 IVAATRQRSKSRTSYARFIEFGASPRATIALYRCAKIKALLDGRGFVIPEDVKDVAYPVL 298 + ++ T R + + ALL+GR D+ Sbjct: 230 LFVLLEEKGLHVTD-----------RRKGKILKAVAAHALLNGRSSAEESDL-------- 270 Query: 299 RHRVVLSYEAEAEDMDAERVIEALLEQV 326 +VL Y + D +++ L+E++ Sbjct: 271 ---IVLKYTVPKDPEDFDKINIILMEEL 295 >gi|118431784|ref|NP_148466.2| CoxD-like protein [Aeropyrum pernix K1] Length = 298 Score = 48.9 bits (115), Expect = 2e-07 Identities = 65/242 (26%), Positives = 101/242 (41%), Gaps = 44/242 (18%) Query: 28 SRVVVGQEAMFEGLMMGLLAGGHVLLEGVPGLAKTLAVKTLAGILDASFKRIQ------- 80 SR + + L + L G +L+EG PG KT K LA L R+Q Sbjct: 24 SRDYIPSRDLLMALYLALKLGKPLLVEGEPGNGKTELAKVLAEALGTELIRLQCYEGIDA 83 Query: 81 --------FTPDLLPADL---TGTL--VYRQQTGEFVVRRGPVFSNI---------VLAD 118 + LL + +G + + R+ E + +GP+ + +L D Sbjct: 84 SQALYDWNYPKQLLAIRMLERSGDVESIEREIYSEKYLVKGPLLRAVTHRGPKPPVLLID 143 Query: 119 EINRAPAKVQSALLEAMQERQVTIGD--TSYALPDPFFVLATQNPIEQEGTYPLPEAQLD 176 EI+RA + ++ LLE + E QVT+ + T A P V+ T N + G L Sbjct: 144 EIDRADEEFEAFLLEFLAEFQVTVPEIGTFRAERRPIVVI-TSNRTREVG------EGLR 196 Query: 177 RFLLKILIGYPSPQEELEILRR--KGIEEDVKVKQVLFKTDLKRLQEIAQSVLVDPRIEE 234 R L + + YP + E+EI+ R +G E + K V D+ +Q VL P + E Sbjct: 197 RRCLYVYVTYPPKEREVEIVMRRVRGAERRLVEKAV----DVVARIRASQEVLKKPGVSE 252 Query: 235 YI 236 I Sbjct: 253 TI 254 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 322,486 Number of Sequences: 1700 Number of extensions: 14678 Number of successful extensions: 78 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 5 length of query: 329 length of database: 492,079 effective HSP length: 77 effective length of query: 252 effective length of database: 361,179 effective search space: 91017108 effective search space used: 91017108 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719361|ref|YP_003874893.1| arginine biosynthesis bifunctional protein ArgJ [Spirochaeta thermophila DSM 6192] (429 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 475,495 Number of Sequences: 1700 Number of extensions: 23184 Number of successful extensions: 77 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77 Number of HSP's gapped (non-prelim): 0 length of query: 429 length of database: 492,079 effective HSP length: 79 effective length of query: 350 effective length of database: 357,779 effective search space: 125222650 effective search space used: 125222650 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719362|ref|YP_003874894.1| histidinol-phosphatase [Spirochaeta thermophila DSM 6192] (276 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 295,554 Number of Sequences: 1700 Number of extensions: 12494 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 276 length of database: 492,079 effective HSP length: 76 effective length of query: 200 effective length of database: 362,879 effective search space: 72575800 effective search space used: 72575800 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719363|ref|YP_003874895.1| hypothetical protein STHERM_c16840 [Spirochaeta thermophila DSM 6192] (199 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 233,965 Number of Sequences: 1700 Number of extensions: 11238 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 199 length of database: 492,079 effective HSP length: 72 effective length of query: 127 effective length of database: 369,679 effective search space: 46949233 effective search space used: 46949233 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719364|ref|YP_003874896.1| hypothetical protein STHERM_c16850 [Spirochaeta thermophila DSM 6192] (288 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600857|ref|NP_147381.1| metal dependent hydrolase [Aeropyru... 46 9e-07 gi|118431611|ref|NP_148202.2| ribonuclease Z [Aeropyrum pernix K1] 42 2e-05 >gi|14600857|ref|NP_147381.1| metal dependent hydrolase [Aeropyrum pernix K1] Length = 250 Score = 46.2 bits (108), Expect = 9e-07 Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 7/112 (6%) Query: 21 LLFLGTGTAFSKRLYQNNLLLVKNEQHLLVDCGTRGTQALHELGLSVGEIQHYLFTHSHA 80 L FLGTG A + R Q++LLL +LVD AL LG I + TH H Sbjct: 6 LYFLGTGAAVNPRRMQSSLLLDYMGVTVLVDASCGAANALEALGYPPESIGAVVVTHGHY 65 Query: 81 DHIGGAEEIMLVNRYMKRRRPHLYIPRAYQRLL-------WNESLKGGSAYS 125 DH+ G + + + L+ P A + ++ S +GG YS Sbjct: 66 DHVCGLGLLSFIKSFRGGPPLKLHSPPAAEGVVRSVVEAGLRSSARGGVGYS 117 >gi|118431611|ref|NP_148202.2| ribonuclease Z [Aeropyrum pernix K1] Length = 310 Score = 42.0 bits (97), Expect = 2e-05 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Query: 17 GELALLFLGTGTAFSKRLYQNNLLLVKN--EQHLLVDCGTRGTQALHELGLSVGEIQHYL 74 G + + LG+G+A + +LVK+ +L+D G L ++G+S I Sbjct: 2 GRIDITILGSGSAVPSLHRWHPSILVKDWMGNTVLLDAGEGVQIRLRKVGVSPSSIDVLA 61 Query: 75 FTHSHADHIGGAEEIMLVNRYMKRRRP 101 TH H DHI G +++ RR+P Sbjct: 62 ITHPHGDHINGVAGLLMTMSLQSRRKP 88 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.143 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 304,542 Number of Sequences: 1700 Number of extensions: 13653 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 2 length of query: 288 length of database: 492,079 effective HSP length: 76 effective length of query: 212 effective length of database: 362,879 effective search space: 76930348 effective search space used: 76930348 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719365|ref|YP_003874897.1| hypothetical protein STHERM_c16860 [Spirochaeta thermophila DSM 6192] (346 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 332,796 Number of Sequences: 1700 Number of extensions: 14099 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 346 length of database: 492,079 effective HSP length: 78 effective length of query: 268 effective length of database: 359,479 effective search space: 96340372 effective search space used: 96340372 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719366|ref|YP_003874898.1| transporter [Spirochaeta thermophila DSM 6192] (240 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 171 2e-44 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 162 5e-42 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 159 6e-41 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 158 1e-40 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 143 3e-36 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 131 1e-32 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 123 4e-30 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 116 5e-28 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 108 1e-25 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 107 3e-25 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 107 4e-25 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 105 1e-24 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 104 2e-24 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 104 2e-24 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 103 3e-24 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 99 1e-22 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 92 2e-20 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 92 2e-20 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 90 5e-20 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 90 6e-20 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 89 8e-20 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 88 2e-19 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 87 4e-19 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 86 7e-19 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 83 6e-18 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 81 3e-17 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 80 4e-17 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 80 5e-17 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 79 8e-17 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 77 3e-16 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 76 9e-16 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 71 3e-14 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 70 5e-14 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 68 2e-13 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 67 5e-13 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 66 9e-13 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 64 3e-12 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 63 6e-12 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 62 1e-11 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 51 2e-08 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 45 2e-06 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 171 bits (432), Expect = 2e-44 Identities = 92/230 (40%), Positives = 139/230 (60%), Gaps = 3/230 (1%) Query: 8 DGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTIDGID 67 +G+ KR G L +S ++ +G +Y ++GPNGAGKTT R L L D G + G Sbjct: 12 EGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALLGEP 71 Query: 68 GLAHPDEVRSRISYLAEESLAYKHMTGEAYLRFMAGLYADSITREEEFFARGCELSGLGE 127 + R++YL E+ Y++MTG +LR A +Y + E + LSGLG Sbjct: 72 VERAGGSLFRRVAYLPEDGEPYRNMTGHEFLRLYASIYG--VEDLEGYLEEASRLSGLGG 129 Query: 128 RLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIRSLTE-EGI 186 RL +++ +YSKGM R+LL+A + +KP LA+LDEPT+GLD +V +R L++ +E G+ Sbjct: 130 RLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERHGV 189 Query: 187 TVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQELKARSGAENLEQVFM 236 TVLLSSHNM EVE + + +I GR++ G+P E R+GA +LE+ ++ Sbjct: 190 TVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGEAVRRTGASSLEEAYV 239 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 162 bits (411), Expect = 5e-42 Identities = 91/216 (42%), Positives = 134/216 (62%), Gaps = 1/216 (0%) Query: 17 VTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTIDGIDGLAHPDEVR 76 + ALDG+ + +G +++L+GPNGAGKTT ++ILSTLL+PD G + G D + + VR Sbjct: 26 IRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANNVR 85 Query: 77 SRISY-LAEESLAYKHMTGEAYLRFMAGLYADSITREEEFFARGCELSGLGERLKDKIST 135 SRI L E Y ++G L F + LY + E+ GL E ++ Sbjct: 86 SRIGVVLGGERALYWRLSGWDNLWFFSQLYGIPPREAKRRVKELLEIVGLEEWAHVRVEN 145 Query: 136 YSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIRSLTEEGITVLLSSHNM 195 YSKGM ++L IAR ++ P + +LDEPT GLD + A +VR++IR + EG TVLL++H M Sbjct: 146 YSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVLLTTHYM 205 Query: 196 LEVEFLARRVGIIHGGRLLAEGTPQELKARSGAENL 231 +E E L+ RV II GR++AEG P++LK+ G E++ Sbjct: 206 VEAEELSDRVAIISKGRIVAEGPPEDLKSLVGGESV 241 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 159 bits (402), Expect = 6e-41 Identities = 102/233 (43%), Positives = 135/233 (57%), Gaps = 10/233 (4%) Query: 3 ALLTVDGLKKRF--GR-----VTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLV 55 A++ GL KRF GR V AL G+SFS+ +GEIY+ +GPNGAGKTTT+RILSTLL Sbjct: 4 AMIEARGLVKRFVSGRIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLD 63 Query: 56 PDEGGFTIDGIDGLAHPDEVRSRISY-LAEESLAYKHMTGEAYLRFMAGLYADSITREEE 114 PD G + G D + EVR RI L+ E Y +TG L + +Y + Sbjct: 64 PDGGEARVAGFDVVKERWEVRKRIGVMLSVERGFYWKLTGRENLYYFGRIYGIPQGELKS 123 Query: 115 FFARGCELSGLGER--LKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAV 172 +L GL + S GM +L +AR ++ P + ILDEPT GLD +A Sbjct: 124 RIKEVLDLVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASAR 183 Query: 173 QVRTLIRSLTEEGITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQELKAR 225 +R +IRSL EG T+ +++HNM+E E ++ RVGII GGR+ EGTP ELK R Sbjct: 184 TIRGVIRSLASEGRTIFITTHNMVEAEMISDRVGIIIGGRIAMEGTPDELKRR 236 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 158 bits (400), Expect = 1e-40 Identities = 92/229 (40%), Positives = 132/229 (57%) Query: 3 ALLTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFT 62 A++ + L K +G A+DG+SF I +GE+++L+GPNGAGKTTT+++LSTLL P G Sbjct: 5 AMVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAW 64 Query: 63 IDGIDGLAHPDEVRSRISYLAEESLAYKHMTGEAYLRFMAGLYADSITREEEFFARGCEL 122 I G + P VR I + ++ A M+G + A LY + E + Sbjct: 65 IAGYSIVREPGNVRRVIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEARERTREVLDY 124 Query: 123 SGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIRSLT 182 L E +++TYS GM RKL IA +++ P + LDEPT GLDV + + I L Sbjct: 125 LDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLK 184 Query: 183 EEGITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQELKARSGAENL 231 +T+LL++H M E E L+ RV II GR++AEGTP+ELKAR E + Sbjct: 185 RSAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEELKARVKGETV 233 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 143 bits (361), Expect = 3e-36 Identities = 89/232 (38%), Positives = 128/232 (55%), Gaps = 3/232 (1%) Query: 9 GLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTIDGIDG 68 G+ K L G+S S+ GEI+ L G NGAGKTT+LR+L LL D G + G+D Sbjct: 19 GVAKSVKGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDP 78 Query: 69 LAHPDE-VRSRISYLAEESLAYKHMTGEAYLRFMAGLYADSITREEEFFARGCELSGLG- 126 E V+ + YL E++ Y+ +TG + F A LY+ EE SGL Sbjct: 79 WGGGFERVKGEVGYLPEDASVYERLTGMENILFYARLYS-GWRDVEELVENAVFYSGLSR 137 Query: 127 ERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIRSLTEEGI 186 E L + YSKGM R+LL+ +M KP L +LDEPTSG+D + +++ ++R L+ EG Sbjct: 138 EDLARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSREGR 197 Query: 187 TVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQELKARSGAENLEQVFMEV 238 +L+++H++ E +A RV IIHGG +A G P L E LE F+ + Sbjct: 198 AILVTTHDLALAEEIADRVTIIHGGSTVASGPPYRLVEEYCGETLEDAFVNI 249 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 131 bits (330), Expect = 1e-32 Identities = 84/232 (36%), Positives = 126/232 (54%), Gaps = 14/232 (6%) Query: 1 MAALLTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGG 60 M ++ V+GL KR+G V AL G+SFS+ GE++ +GPNGAGKTTT+R+L P G Sbjct: 1 MGVVIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGS 60 Query: 61 FTIDGIDGLAHPDE--VRSRISYLAEESLAYKHMTGEAYLRF---MAGLYADSITREEEF 115 + G++ L +P VR R+ Y+ E Y ++G L + + G + + RE Sbjct: 61 ARVFGVE-LYNPGASGVRRRVGYVPGEFEFYGGVSGGRMLDYWCRLVGGCSRGVVREL-- 117 Query: 116 FARGCELSGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVR 175 L L+ + TYS+GM + L + A +P L ++DEPT+GLD +V Sbjct: 118 ------LEAFPLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVL 171 Query: 176 TLIRSLTEEGITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQELKARSG 227 +RS EG+TV SSH + EV+ +A RVG++ G L+A L +SG Sbjct: 172 DFVRSKAREGVTVFFSSHVLSEVQRVADRVGLLRSGVLVALEDVSSLLRKSG 223 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 123 bits (309), Expect = 4e-30 Identities = 85/226 (37%), Positives = 117/226 (51%), Gaps = 2/226 (0%) Query: 1 MAALLTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGG 60 M + GL+KRFG TA+ G+SFS+ GE ++GPNG+GKTT LR++S +L P G Sbjct: 1 MGCTVEARGLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGS 60 Query: 61 FTIDGIDGLAHP-DEVRSRISYLAEESLAYKHMTGEAYLRFMAGLYADSITREEEFFARG 119 + G D E R I + ++ + MTG Y+ + GL S R Sbjct: 61 VRVCGYDVWGDGWREARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREARRV 120 Query: 120 CELSGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIR 179 E+ G + L ++ S G R L IA A+ P + +LDEP SGLDV + +R Sbjct: 121 LEMLGFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASLR 180 Query: 180 SLTEEGITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQELKAR 225 +G TVL SSH+ E E + RV I+H GRL A G P+EL R Sbjct: 181 K-AFKGRTVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPRELIQR 225 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 116 bits (291), Expect = 5e-28 Identities = 74/231 (32%), Positives = 125/231 (54%), Gaps = 12/231 (5%) Query: 3 ALLTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFT 62 A + ++G+ KRFG+V A+D + SI GE + L+GP+G GKTTTLR+++ L PDEG Sbjct: 2 AEIRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRIL 61 Query: 63 IDGIDGLAHPDEVRSRISYLAEESLAYKHMTGEAYLRFM-------AGLYADSITREEEF 115 IDG D + D ++ + + Y HM+ + F GL D I R Sbjct: 62 IDGED-VTFKDPKDRNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIE 120 Query: 116 FARGCELSGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVR 175 A+ + L +R K S G +++ +ARA++ +P + ++DEP S LD + +R Sbjct: 121 VAKLLRIEDLLDR---KPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMR 177 Query: 176 TLIRSLTEE-GITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQELKAR 225 ++ L ++ IT + +H+ E +A R+ +++ GR++ GTP+E+ R Sbjct: 178 AELKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEVYMR 228 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 108 bits (270), Expect = 1e-25 Identities = 68/223 (30%), Positives = 120/223 (53%), Gaps = 8/223 (3%) Query: 7 VDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTIDGI 66 ++G+ KRFG+ AL G+ I GE L+GP+G GKTTTLRI++ L PD G DG Sbjct: 6 LEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFDGR 65 Query: 67 DGLAHPDEVRSRISYLAEESLAYKHMTGEAYLRF---MAGLYADSITREEEFFARGCELS 123 D P + R+ ++ + + + HM + F + L D I R + A E+ Sbjct: 66 DVTGLPPKDRN-VAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAAELLEID 124 Query: 124 GLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIRSLTE 183 L +R ++ S G +++ +ARA++ +P + ++DEP S LD +++R+ I+ L Sbjct: 125 HLLDRYPHQL---SGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKLQR 181 Query: 184 E-GITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQELKAR 225 G+T++ +H+ +E + R+ +++ G + GTP ++ R Sbjct: 182 RLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDVYHR 224 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 107 bits (267), Expect = 3e-25 Identities = 73/225 (32%), Positives = 112/225 (49%), Gaps = 4/225 (1%) Query: 1 MAALLTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGG 60 M +L V + KRFG + AL G+SFS+ +GE LIGPNGAGKTT I+S + +PD G Sbjct: 1 MTIILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGR 60 Query: 61 FTIDGIDGLAHPDEVRSRISYLAEESLAYKHMTGEAYLRFM---AGLYADSITREEEFFA 117 G+D P RSR +A + + L + A L + I E Sbjct: 61 VIYKGVDITGWPAYRRSRAG-IARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAM 119 Query: 118 RGCELSGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTL 177 ++ GL + + ++L +ARA+ +P L +LDE +GL + Sbjct: 120 EAIDMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYT 179 Query: 178 IRSLTEEGITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQEL 222 + +++ GIT+++ H M V A RV ++H G +AEGTP+E+ Sbjct: 180 LLEISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREV 224 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 107 bits (266), Expect = 4e-25 Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 6/232 (2%) Query: 1 MAALLTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGG 60 M +L G+ K++ LD + + +GE L+GPNGAGKTT +++ L D G Sbjct: 1 MDTVLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGR 60 Query: 61 FTIDGIDGLAHPDEVRSRISYLAEESLAYKHMTGEAYLRFMAGLYADSITREEEFFARGC 120 ++G+D P R + + E M +L A + S +R + + R Sbjct: 61 VLLNGLDPWREP-RAREGVGVVFERPNLPSSMPVVEFLESAAAIIGSSPSRVD-WAIRAA 118 Query: 121 ELSGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLD-VENAVQVRTLIR 179 L G + ++S G+ ++ IA A++ +P + DEPTS LD +E +R L R Sbjct: 119 GLEGHEWKTFPQLSA---GLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLAR 175 Query: 180 SLTEEGITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQELKARSGAENL 231 E G+++L+SSH ++E+ +A R+ ++ GGRL AEG+P++L R+G L Sbjct: 176 LNREHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDLFRRAGLARL 227 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 105 bits (261), Expect = 1e-24 Identities = 79/235 (33%), Positives = 122/235 (51%), Gaps = 18/235 (7%) Query: 1 MAALLTVDGLKKRFGR-VTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEG 59 M LL V ++ + + + LS S++KG I LIGPNGAGKTT L+ +S ++ + G Sbjct: 1 MGPLLNVSNVEIMYHPFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERG 60 Query: 60 GFT-----IDGID-GLAHPDEVRSR-ISYLAEESLAYKHMTGEAYL---RFMAGLYADSI 109 T ++G D PDE+ R + Y+ E +K +T E L + AG D I Sbjct: 61 RVTRGSIQLEGEDITNREPDEIARRGVIYVMEGRRIFKELTTEENLVSVAYAAGASRDDI 120 Query: 110 TREEEFFARGCELSGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVE 169 +F R L ERL +K S G + L IA A++ +P L +LDEP+ GL + Sbjct: 121 RSVLSYFPR------LKERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPK 174 Query: 170 NAVQVRTLIRSL-TEEGITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQELK 223 Q+ I+ L EEG+T+LL+ N + ++ +I GR++ EG+ +EL+ Sbjct: 175 ITSQIYATIKMLHREEGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEELR 229 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 104 bits (260), Expect = 2e-24 Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 10/223 (4%) Query: 5 LTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTID 64 + ++ + KRFG ALD +S +I GEI+ L+GP+G GKTTTLR+++ PDEG I Sbjct: 4 IRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIG 63 Query: 65 GID-GLAHPDEVRSRISYLAEESLAYKHM---TGEAYLRFMAGLYADSITREEEFFARGC 120 D + P E + + + + + HM AY + L I R + A Sbjct: 64 SRDVTMLKPYERNTAMVF--QNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWAAELL 121 Query: 121 ELSGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVR-TLIR 179 E+ L +R ++ S G +++ +ARA++ +P + ++DEP S LD +++R ++R Sbjct: 122 EIDHLLDRYPHQL---SGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVR 178 Query: 180 SLTEEGITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQEL 222 G+T++ +H+ E ++ RV +++ GR+ GTP E+ Sbjct: 179 LQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEV 221 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 104 bits (259), Expect = 2e-24 Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 3/221 (1%) Query: 5 LTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTID 64 + L KRFG+ A + F+ G I ++GPNGAGKTT L+ + L+ P G ++ Sbjct: 5 VNASALSKRFGQRYAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVE 63 Query: 65 GIDGLAHP-DEVRSRISYLAEESLAYKHMTGEAYLRFMAGLYADSITREEEFFARGCELS 123 G++ + +++ RI Y+ E + T L +A L + E+ Sbjct: 64 GVNPRSPGFEKLLPRIGYVPELPVVPLWTTPCILLETLARLEGYTSVEARVRAREALEVV 123 Query: 124 GLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIRSLTE 183 GL + I SKG +++L+A+A + + L +LDEP SGLD E +VR L+R++ Sbjct: 124 GLAGECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAR 183 Query: 184 EGITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQELKA 224 EG TV++SSH + E+E +A V ++ +L G+ +EL+A Sbjct: 184 EGATVIVSSHILRELEDIATHVLVLKTDQLF-YGSIEELRA 223 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 103 bits (258), Expect = 3e-24 Identities = 66/223 (29%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 7 VDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTIDGI 66 +D + +G V AL G+SFS + I A++GP+G GKTT L++++ LL P G G+ Sbjct: 8 LDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFGGV 67 Query: 67 DGLAHPDEVRSRISYLAEESLAYKHMTGEAYLRF---MAGLYADSITREEEFFARGCELS 123 D P E RS + ++ ++ + HMT + F G + R+ E+ L+ Sbjct: 68 DYTGLPPERRS-VGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWALETVGLT 126 Query: 124 GLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIRSLTE 183 E + +++ S G +++ +ARA+ +P + +LDEP S LD + ++ ++ L Sbjct: 127 PPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQR 186 Query: 184 E-GITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQELKAR 225 + G T++ +H+ E LA + I+ GR++ GTP E+ R Sbjct: 187 KLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEVYTR 229 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 99.0 bits (245), Expect = 1e-22 Identities = 82/227 (36%), Positives = 110/227 (48%), Gaps = 13/227 (5%) Query: 4 LLTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTI 63 LL V + +G AL G+S + KGEI AL+G NGAGKTTTL +S LL P G Sbjct: 6 LLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIW 65 Query: 64 DG--IDGLAHPDEVRSRISYLAEESLAYKHMTGEAYLRFMAGLYADSITREEEFFARGCE 121 G I GL V IS++ E + +T LR A S R +E F E Sbjct: 66 QGRDITGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRVAA-----STRRAKEHFQDSLE 120 Query: 122 -----LSGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRT 176 L R T S G + L IARA++ +P+L ++DEP+ GL + A V Sbjct: 121 QVYTIFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIY 180 Query: 177 LIRSLTEE-GITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQEL 222 L L EE G+T+LL N+ +A R ++ GR++ EG EL Sbjct: 181 LASRLREELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDEL 227 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 91.7 bits (226), Expect = 2e-20 Identities = 63/226 (27%), Positives = 114/226 (50%), Gaps = 7/226 (3%) Query: 4 LLTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTI 63 ++ ++ + +G++ L +S I +G I ++GPNGAGK+T L+ + +G Sbjct: 5 IIKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLF 64 Query: 64 DGIDGLAHPDEVRSRI--SYLAEESLAYKHMTGEAYLRFMAGLYADSITRE--EEFFARG 119 + D P R++I +++ + ++ +T LR + + R+ EE F+ Sbjct: 65 ENTDVTHMPPHDRAKIGMTFIFQLENIFRELTVYENLRLAGYDLPEDVFRDRLEEVFSM- 123 Query: 120 CELSGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIR 179 L ERL K T S G + L +A +M KP + ++DEPT+GL + A +V + +R Sbjct: 124 --FPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVR 181 Query: 180 SLTEEGITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQELKAR 225 L +EG TV+L N+ + + ++ GR+ +G +EL AR Sbjct: 182 ILNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDGPAEELLAR 227 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 91.7 bits (226), Expect = 2e-20 Identities = 74/238 (31%), Positives = 115/238 (48%), Gaps = 21/238 (8%) Query: 4 LLTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTI 63 +L V+ L+KRFG + ALD ++ I++G++ LIGPNG+GKTT + ++S PD G Sbjct: 6 ILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLF 65 Query: 64 DGID------------GLAHPDEVRSRISYLA--EESLAYKHMTGEAYLRFMAGLYADS- 108 G D GL ++ + L E L GE ++AGL Sbjct: 66 KGRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENV--YLAGLARRLW 123 Query: 109 ITREEEFFARGCEL---SGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSG 165 + E+ AR E+ GL + S G + L IARA+M + I+DEP +G Sbjct: 124 LGFEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAG 183 Query: 166 LDVENAVQVRTLIRSLT-EEGITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQEL 222 ++ A + I+ L E+GIT L+ H + V+ RV + G+++A G P E+ Sbjct: 184 VNPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEV 241 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 90.1 bits (222), Expect = 5e-20 Identities = 61/221 (27%), Positives = 112/221 (50%), Gaps = 2/221 (0%) Query: 3 ALLTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFT 62 A + ++G+ K FG V A+ ++ I+ E +++GP+G+GKTT L +++ + P G Sbjct: 2 ASVKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIY 61 Query: 63 IDGIDGLAHPDEVRSRISYLAEESLAYKHMTGEAYLRFMAGLYADSITREEEFFARGCEL 122 + +D P R+ I + + Y HMT + F L +E +L Sbjct: 62 FNDVDVTDLPPNKRN-IGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVAKL 120 Query: 123 SGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIRSLT 182 G+ L + S G +++ +ARA++ +P + +LDEP S LD +++R+ ++ L Sbjct: 121 LGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQ 180 Query: 183 EE-GITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQEL 222 +E GIT + +H+ E +A R+ II G + G P ++ Sbjct: 181 KELGITAIYVTHDQSEALAMADRIAIIASGVIQQVGKPWDV 221 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 89.7 bits (221), Expect = 6e-20 Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 5/227 (2%) Query: 1 MAALLTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGG 60 MA LL V GL + L G+ S+ GE ++GP+G+GK+T L+ + L+ PD G Sbjct: 1 MARLLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGS 60 Query: 61 FTIDGID----GLAHPDEVRSRISYLAEESLAYKHMTGEAYLRFMAGLYADSITRE-EEF 115 G+D + VR +I YL + + HMT + + R+ EE Sbjct: 61 IVFRGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAEER 120 Query: 116 FARGCELSGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVR 175 + + G+ + + S G ++ +ARA+ M+P + +LDEPTS LD E+ V Sbjct: 121 AVKYLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVL 180 Query: 176 TLIRSLTEEGITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQEL 222 + + G +++ +H +A R+ + G + EG P EL Sbjct: 181 EALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSEL 227 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 89.4 bits (220), Expect = 8e-20 Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 15/234 (6%) Query: 7 VDGLKKRFGRVT-ALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTIDG 65 ++G++ R+ L G+SFS+D G + AL+GPNG+GKTT LR+L+ ++ P G + G Sbjct: 8 LEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEVCG 67 Query: 66 IDGLAHPDEVRSRISYL-AEESLAYKHMTGEAYLRFMAGLYADSIT---REEEFFARGCE 121 + P VR + Y A + + E L + G+ ++ + R+ E Sbjct: 68 ----SPPGRVRRMLGYAPASPEVDPRLKAVEVALLYRYGV-SEGVAWGRRDWEEVLAALG 122 Query: 122 LSGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIRSL 181 G+GE + S G R +++A + +P LA+LDEP S LDV N +V ++RSL Sbjct: 123 EMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRSL 182 Query: 182 TEEGITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQELKARSGAENLEQVF 235 T++ ++H+ L A V ++ G L A+G P+ + E +E+V+ Sbjct: 183 RGRA-TIVYTTHDPL-AAMAADSVIMLREGLLHAQGPPEAVVT---PETIEEVY 231 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 88.2 bits (217), Expect = 2e-19 Identities = 59/219 (26%), Positives = 120/219 (54%), Gaps = 13/219 (5%) Query: 20 LDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTL--LVPD---EGGFTIDGIDGLAH-PD 73 L G+SF G + A++GP+G+GK+T +R+++ L L+P EG I+ ++ + P Sbjct: 21 LKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVMKEDPY 80 Query: 74 EVRSRISYLAEESLAYKHMTGEAYLRFMAGLYADSITREE--EFFARGCELSGLGERLKD 131 +R + +E + HMT + L+ + ++E E +++ L + +KD Sbjct: 81 NIRRYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEIVEWALKMAHLWDEVKD 140 Query: 132 KISTY----SKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQV-RTLIRSLTEEGI 186 ++S Y S G ++L +ARA+ +KP + +LDEPT+ +D + V++ ++++ EE Sbjct: 141 RLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKEEMA 200 Query: 187 TVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQELKAR 225 TV++ +H + ++ ++ ++ GR++ G +EL R Sbjct: 201 TVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELVLR 239 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 87.0 bits (214), Expect = 4e-19 Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 16/239 (6%) Query: 5 LTVDGLKK----RFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGG 60 + V+G+ K R R+ AL +S S+ +GE+ A++GP+G+GKTT L I++ + P+ G Sbjct: 11 VVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGR 70 Query: 61 FTIDGID-GLAHPDEVR----SRISYLAEESLAYKHMTG-EAYLRFMAGLYADSITREEE 114 +DG + A +E+R R+ Y+ ++ +T E L MA + R +E Sbjct: 71 VIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIPTLTALENILLPMALAGKANRLRGQE 130 Query: 115 FFARGCELSGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQ- 173 R GLG + + S G ++L +A A+ P + + DEPT LD+ + Sbjct: 131 LLRR----VGLGGKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERI 186 Query: 174 VRTLIRSLTEEGITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQELKARSGAENLE 232 VR L+ G TV+L++H+ V +A RV +I GRL +P + +G +E Sbjct: 187 VRILLEEAHSRGKTVVLTTHDP-RVARMADRVAVIEDGRLRGVYSPSRIAGATGFGEVE 244 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 86.3 bits (212), Expect = 7e-19 Identities = 66/239 (27%), Positives = 107/239 (44%), Gaps = 18/239 (7%) Query: 4 LLTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTI 63 +L + + RFG VTALD +S + +GEI +IGPNGAGKT+ L +++ + P G Sbjct: 1 MLWTENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYF 60 Query: 64 DG--IDGLAHPDEVRSRISYLAEESLAYKHMTGEAYLRFMAGLYADSITREEEFFA---- 117 G I GL + +S + S + MT + + E+ +A Sbjct: 61 KGRDITGLKPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAK 120 Query: 118 -----------RGCELSGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGL 166 +L L E I G+ +K+ +A A+ P + ++DEP +GL Sbjct: 121 RWEVEARERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGL 180 Query: 167 DVENAVQ-VRTLIRSLTEEGITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQELKA 224 E VR +I + T++L H+M V + RV ++ G+++ EG P E A Sbjct: 181 SKEEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHEAVA 239 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 83.2 bits (204), Expect = 6e-18 Identities = 67/242 (27%), Positives = 121/242 (50%), Gaps = 25/242 (10%) Query: 3 ALLTVDGLKKRF----GRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPD- 57 A+L + LK + G V A+DG+S S++KGE +++G +G+GK+T + L++P Sbjct: 2 AVLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPG 61 Query: 58 ---EGGFTIDGIDGLAHPDEVRSR-----ISYLAEESLA----YKHMTGEAYLRFMAGLY 105 G G+D L+ E R I + ++ A Y+ + + + Sbjct: 62 RIVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGL 121 Query: 106 ADSITREEEFFARGCELSGLGERLKDKISTY----SKGMTRKLLIARAVMMKPLLAILDE 161 A S + E EL G+ +D+ S Y S G +++ IA AV ++P + I DE Sbjct: 122 ASSGSEAESMAGDALELVGIP---RDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADE 178 Query: 162 PTSGLDVENAVQVRTLIRSLTEE-GITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQ 220 PT+ LDV ++ L++ L EE G+TV+L +H++ + R+ +++ G L+ G + Sbjct: 179 PTTALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAE 238 Query: 221 EL 222 ++ Sbjct: 239 DV 240 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 80.9 bits (198), Expect = 3e-17 Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 7/219 (3%) Query: 7 VDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTIDGI 66 V+ L + L G++ + +IGPNGAGKTT L+ + L+ P G +DG Sbjct: 5 VEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLDGF 64 Query: 67 DGLAHPDEVRSRISYLAEESLAYK--HMTGEAYLRFMAGLYADSITREEEFFARGCELSG 124 + P+ V Y+ + A K MT ++ L +TR E G Sbjct: 65 EATGRPEMVGRYAGYVPQNPSAPKLSPMTVREFVE--TSLRLRGVTRARERAVEVLHTLG 122 Query: 125 L-GERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIRSLTE 183 + GE L+ ++ S GM +++ IARA+ P + ++DEP + +D +++ +I L Sbjct: 123 IRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAGLAR 182 Query: 184 EGITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQEL 222 E + VL++SH+ + + ++ L+A G P+E+ Sbjct: 183 ERL-VLMTSHDP-SLLLGHTDIIVVINRDLIASGPPEEV 219 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 80.5 bits (197), Expect = 4e-17 Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 11/220 (5%) Query: 1 MAALLTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGG 60 MAALL ++ + K G L G+S ++ GE + G NG+GKTT LR+ + L P G Sbjct: 1 MAALLRLENVWKMLGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGR 60 Query: 61 FTIDGIDGLAHPDEVRSRISYLAEESLAYKHMTGEAYLRFMAGLYADSITREEEFFARGC 120 + P R + Y+ + Y +T + F + L+ S+ + A Sbjct: 61 VS------WGCPRGPRGCVGYVGHTPMVYGDLTVWENVEFFSSLHGGSL-GDYPLAAEAW 113 Query: 121 ELSGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIRS 180 L GL + S S G R+L + RA++ +P L +LDE +GLD + + L+R Sbjct: 114 RLLGLEKYGSHLASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLLRL 173 Query: 181 LTEEGITVLLSSHNMLEVEF--LARRVGIIHGGRLLAEGT 218 EG+ +L+++ +LE + LA RV + G LLAE + Sbjct: 174 ALGEGLALLMTT-PLLEPRYLGLASRVYTLQDG-LLAEAS 211 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 80.1 bits (196), Expect = 5e-17 Identities = 58/201 (28%), Positives = 99/201 (49%), Gaps = 2/201 (0%) Query: 17 VTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTIDG--IDGLAHPDE 74 V ALD + F++ GE++AL+G NGAGKTT +RIL + P G + G + D Sbjct: 26 VKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYVWGRKVSWRGPWDA 85 Query: 75 VRSRISYLAEESLAYKHMTGEAYLRFMAGLYADSITREEEFFARGCELSGLGERLKDKIS 134 +R+ I+ + ++ + MT E + + E GL L ++ Sbjct: 86 IRNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRTLETAERLGLEIDLAKTVA 145 Query: 135 TYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIRSLTEEGITVLLSSHN 194 G +++ I +A+ + ILDEPTS L A ++ + +R L + G++V+ +H Sbjct: 146 DLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLRLLKDMGVSVVYITHK 205 Query: 195 MLEVEFLARRVGIIHGGRLLA 215 + EV +A RV ++ GR+ A Sbjct: 206 LGEVVRVADRVTVLRRGRVSA 226 Score = 60.1 bits (144), Expect = 5e-11 Identities = 62/237 (26%), Positives = 104/237 (43%), Gaps = 12/237 (5%) Query: 4 LLTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTI 63 LL+V G+ V + +S + +GEI + G G G+ + + L P G + Sbjct: 262 LLSVRGVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEV 321 Query: 64 DGIDGLAHPDEVRSRISYLAEES---LAYKHMTGE--AYLRFMAG-LYADSITREEEFFA 117 G D R+ Y+A + LA + E A+L + A +R E+ F Sbjct: 322 QGRRIEGSLDFYRAGGGYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRRSRLEDLFR 381 Query: 118 RGCELSGLGERLK-DKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRT 176 R E L R + S G +K+++ V+ L + PT GLD+ VR Sbjct: 382 RLVERFRLVARSPWTPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTSFVRN 441 Query: 177 LIRSLTEEGITVLLSSHNMLEVEFLARRVGIIHGGRLL-----AEGTPQELKARSGA 228 L+ L +G +LL S ++ E+ L+ R+ ++ GGR+ ++ TP++L GA Sbjct: 442 LLSELARQGAGILLVSTDLDEILELSDRIYVMSGGRVTGVLERSQATPEKLGVLMGA 498 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 79.3 bits (194), Expect = 8e-17 Identities = 63/234 (26%), Positives = 118/234 (50%), Gaps = 21/234 (8%) Query: 4 LLTVDGLKKRF----GRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDE- 58 LL V+ LK F G V A+DG+SF++ +GE+ + G +G+GK+T + L+ P Sbjct: 5 LLVVEDLKTYFYTLRGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGR 64 Query: 59 ---GGFTIDGIDGLAHPD-EVRSRISYLAEESLAYKHMTGEAYLRFMAGLYADSITREEE 114 G IDG+D + + E+R ++ + + S+ ++ + G + + + Sbjct: 65 IVGGRIMIDGMDVTSMSEAELRRKVRW-KKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHR 123 Query: 115 FFARG---------CELSGLGERLKDKIS-TYSKGMTRKLLIARAVMMKPLLAILDEPTS 164 R E GL + D+ S G ++++IA A+ ++P + I DEPT+ Sbjct: 124 GVGRHEARQRVYELLESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTT 183 Query: 165 GLDVENAVQVRTLIRSLT-EEGITVLLSSHNMLEVEFLARRVGIIHGGRLLAEG 217 LDV Q+ L++ L E+ ++++L +H++ + LA V I++GG++ G Sbjct: 184 ALDVVVQAQILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEYG 237 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 77.4 bits (189), Expect = 3e-16 Identities = 71/249 (28%), Positives = 115/249 (46%), Gaps = 34/249 (13%) Query: 4 LLTVDGLKKRF----GRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEG 59 ++ V+ LK F G V A++ +SF I +GE Y L+G G GK+ T R L+ L+ P Sbjct: 9 IIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPP-- 66 Query: 60 GFTIDGIDGLAHPDEVRSRISYLAEESLAYKHMTGE--AYL-----RFMAGLYADSITRE 112 G ++G + + E R+ ++ + + + GE AY+ + LY Sbjct: 67 GRIVEG--KIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVG 124 Query: 113 EEFFARGCELS-------GLG-----------ERLKDKISTYSKGMTRKLLIARAVMMKP 154 E A G S +G +R+K S GM ++ +I ++ +P Sbjct: 125 ETMLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRP 184 Query: 155 LLAILDEPTSGLDVENAVQVRTLIRSL-TEEGITVLLSSHNMLEVEFLARRVGIIHGGRL 213 L I DEPT+ LDV Q+ L+ L E G+T+LL +HN+ V RV +++ G + Sbjct: 185 KLLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNI 244 Query: 214 LAEGTPQEL 222 + E EL Sbjct: 245 VEEAPVDEL 253 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 75.9 bits (185), Expect = 9e-16 Identities = 61/236 (25%), Positives = 110/236 (46%), Gaps = 17/236 (7%) Query: 4 LLTVDGLKKRF---------GRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLL 54 L+ GLKK F V A+D ++ I +G+ L+G +G+GKTT R++ L Sbjct: 27 LVETVGLKKYFPVKSLFFTRAYVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLE 86 Query: 55 VPDEGGFTIDGIDGLAHPD----EVRSRISYLAEESLAYKHMTGEAY--LRFMAGLYADS 108 P G DGID + E R R + ++ + + + ++ Sbjct: 87 EPTGGRIFFDGIDVMKLRGRGLKEFRRRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIK 146 Query: 109 ITREEEFFARGCELSGLGE-RLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLD 167 + +E+ GL E L +S G +++ IAR + +KP +LDEPTS LD Sbjct: 147 VGDLQEYIVSLLYQVGLNETHLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALD 206 Query: 168 VENAVQVRTLIRSLTEE-GITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQEL 222 V Q+ L++ L + +T L SH++ V +++ + +++ G+++ G +E+ Sbjct: 207 VSVQAQILNLLKDLQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEV 262 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 70.9 bits (172), Expect = 3e-14 Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 39/244 (15%) Query: 17 VTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTI------------- 63 V A+DG+SFSI +GE++ L+G +G GKTTT + + L+ G Sbjct: 47 VKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERR 106 Query: 64 ------DG-IDGLAHPDEVRSRISYLAEE-SLAYKHMTGEAYLRFMAG--------LYAD 107 DG +D LA P R + L E + Y+ G RF +++ Sbjct: 107 GVKSLGDGFVDLLAVP---RRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSI 163 Query: 108 SITRE-EEFFARGCELSGLGERLKDKISTY----SKGMTRKLLIARAVMMKPLLAILDEP 162 RE EE AR E L D + Y S G +++ IARA ++ P L + DEP Sbjct: 164 GNAREREEMVARMLEAVKLTPA-SDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEP 222 Query: 163 TSGLDVENAVQVRTLIRSLTEE-GITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQE 221 S LDV ++ L+ E+ G ++L +H++ ++ R+ +++ G+++ G + Sbjct: 223 VSMLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDARR 282 Query: 222 LKAR 225 + R Sbjct: 283 IIER 286 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 70.1 bits (170), Expect = 5e-14 Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 6/210 (2%) Query: 15 GRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTIDGID--GLAHP 72 G V AL G++ S G + AL+G NGAGKTT L+ + ++ P +G +DG + Sbjct: 16 GGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPKGPG 75 Query: 73 DEVRSRISYLAEESLAY---KHMTGEAYLRFMAGLYADSITREEEFFARGCELSGLGERL 129 D +RS I ++ Y K A +AG A + + A E GL Sbjct: 76 DSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKA-GLRQARTMLAEASEALGLNIDP 134 Query: 130 KDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIRSLTEEGITVL 189 + ++L + +A+ + +LDEPT+ L E A ++ L G VL Sbjct: 135 DRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAASGAAVL 194 Query: 190 LSSHNMLEVEFLARRVGIIHGGRLLAEGTP 219 L +H + E A R+ I+ G + EG P Sbjct: 195 LVTHRIGEAMEHADRLVILRKGVKVYEGPP 224 Score = 54.3 bits (129), Expect = 3e-09 Identities = 51/213 (23%), Positives = 93/213 (43%), Gaps = 21/213 (9%) Query: 27 IDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTIDGIDGLAHPDEVRSRISY--LAE 84 + +GE+ + G G G+ ++ L P +G I G+D P R R+ + E Sbjct: 277 VRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRLGLGVIPE 336 Query: 85 ESLAYKHMTGEAYLRFMA--------GLYADSITREE--EFFARGCELSGLGERLKDKIS 134 E L + + GE+ +A G D E+ E R + + R + Sbjct: 337 ERLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGIKAVSPR--QMVD 394 Query: 135 TYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIRSLTEEGITVLLSSHN 194 S G ++L++AR + +KP L + P +GLD+E V ++R +E G +++ Sbjct: 395 ELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRMSSERGGVLVIDE-- 452 Query: 195 MLEVEFLAR---RVGIIHGGRLLAEGTPQELKA 224 +++FL R ++ + GG + P E K+ Sbjct: 453 --DLDFLLRVSNKIYVASGGIVKGPYLPTEEKS 483 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 68.2 bits (165), Expect = 2e-13 Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 15/228 (6%) Query: 10 LKKRFGR----VTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTIDG 65 LK+ GR V A+DG+ I +GE+ A++G +G GKTT + + + P +G G Sbjct: 24 LKRILGRPDAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRG 83 Query: 66 ----IDGLAHPDEVRSRISYLAEESLAYKHMTGEAYLRFMAGLYADSITREEEFFARGCE 121 LA +R ++ + ++ + L + R EE R E Sbjct: 84 ELLTPHRLARDRRLRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVE 143 Query: 122 -LSGLG-----ERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVR 175 L +G E K S G +++ IAR ++++P + + DEP S +DV + Sbjct: 144 MLETVGLTPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASIL 203 Query: 176 TLIRSL-TEEGITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQEL 222 LI G T++L +H++ +A R+ +++ G+++ G P+ + Sbjct: 204 DLIMDYHRRTGATIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSV 251 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 66.6 bits (161), Expect = 5e-13 Identities = 56/221 (25%), Positives = 112/221 (50%), Gaps = 21/221 (9%) Query: 13 RFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLL----VPDEG--------G 60 R G V ALDG+ + +GEI A++G +G GK+T R ++ +L V ++G G Sbjct: 18 RQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAVIEKGSIILNLGSG 77 Query: 61 FTIDGIDGLAHPDEVRSR---ISYLAEE---SLAYKHMTGEAYLRFMAGLYADSITREEE 114 T+D + L+ + V+ R +S + ++ +L+ H + ++G + + + Sbjct: 78 NTVDLVR-LSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDHVSG-EKRRVEKIAQ 135 Query: 115 FFARGCELSGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQV 174 + + L+ S GM ++++IA +++ +P + I DEPT+ LDV Q+ Sbjct: 136 EILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQI 195 Query: 175 RTLIRSLTEE-GITVLLSSHNMLEVEFLARRVGIIHGGRLL 214 ++ L EE T++L +HN+ +A R+ +++ G ++ Sbjct: 196 LKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVV 236 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 65.9 bits (159), Expect = 9e-13 Identities = 59/239 (24%), Positives = 107/239 (44%), Gaps = 38/239 (15%) Query: 5 LTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPD--EGGFT 62 L V GL + G L+ + F + GE++A++GPNG+GK++ ++ + + EG Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 63 IDGIDGLAHPDEVRS-----------------RISYL----AEESLAYKHMTGEAYLRFM 101 +DG P E R+ R+S L + L + ++ A + + Sbjct: 63 LDGESIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKIV 122 Query: 102 AGLY--ADSITREEEFFARGCELSGLGERLKDKISTYSKGMTRKLLIARAVMMKPLLAIL 159 +Y A + + E R + +S G ++ + +A++ P + IL Sbjct: 123 KRMYEYATKLGLDREILNREVNVG------------FSGGEKKRSELLQAMIFDPKIVIL 170 Query: 160 DEPTSGLDVENAVQVRTLIRSLTEEGITVLLSSHNMLEVEFL-ARRVGIIHGGRLLAEG 217 DEP SGLD++ V I+ L + G V+L +H + F+ RV +++ G +LA G Sbjct: 171 DEPDSGLDIDGLKIVAEFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGSVLARG 229 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 64.3 bits (155), Expect = 3e-12 Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 15/194 (7%) Query: 29 KGEIYALIGPNGAGKTTTLRILSTLLVPD----EGGFTI-DGIDGLAHPDEVRSRISYLA 83 +G++ L+G NG GKTT LRIL+ L P+ EGG D I E+++ L Sbjct: 105 EGQVVGLLGRNGTGKTTALRILAGELKPNLGRVEGGEPEWDEILKRFRGSELQTYFRKLV 164 Query: 84 EESL--AYKHMTGEAYLRFMAGLYADSITREEEFFARGCELS-----GLGERLKDKISTY 136 + L A+K E R + G D + R +E RG L GL + + Sbjct: 165 DGKLRVAHKIQYVELVPRRLKGRVRDLLKRADE---RGVALELAEQVGLDKVFDRDVRQL 221 Query: 137 SKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIRSLTEEGITVLLSSHNML 196 S G +K+LI + + I DEP+S LD+ +++ LI G V++ H++ Sbjct: 222 SGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAARPGAYVMVVEHDLA 281 Query: 197 EVEFLARRVGIIHG 210 +++++ V I++G Sbjct: 282 VLDYVSDLVHILYG 295 Score = 63.9 bits (154), Expect = 3e-12 Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 26/207 (12%) Query: 15 GRVTALDGLSFSIDKGEIYA-----LIGPNGAGKTTTLRILSTLLVPDEGGFTIDGIDGL 69 G ALDG + + +G +Y + GPNG GKTT +R L+ L P ++G Sbjct: 363 GLRVALDGFTLTSGEGALYGGEVIGVAGPNGIGKTTFVRTLAGALKP---------VEGA 413 Query: 70 AHPDEVRSRISY----LAEESLAYKHMTGEAYLRFM-AGLYADSITREEEFFARGCELSG 124 +P R+SY ++ ESL T E L+ + A E R Sbjct: 414 VYPYVEDLRVSYKPQYISPESLP--DATVEQVLKAANPAILAPGSWLNLELVKR----MR 467 Query: 125 LGERLKDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIRSLTE- 183 L + L+ ++ T S G +K+ +A A+ + + +LDEP++ LDVE V V IR + E Sbjct: 468 LDKLLERRVRTLSGGELQKVAVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVET 527 Query: 184 EGITVLLSSHNMLEVEFLARRVGIIHG 210 L+ H+++ +++++ R+ ++ G Sbjct: 528 REAAALVVEHDLMILDYVSDRIMLVTG 554 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 63.2 bits (152), Expect = 6e-12 Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 3/104 (2%) Query: 121 ELSGLGERLKDKIS-TYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIR 179 E GLG+ D+ S G +++ IARA+ + P + +LDEPTS LDV Q+ L+R Sbjct: 174 EAVGLGKEFADRYPYELSGGQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLR 233 Query: 180 SLTEE-GITVLLSSHNMLEVEFLARRVGIIHGGRLLAEGTPQEL 222 L ++ G+T LL +H++ V +++ V +++ G+++ E P+ + Sbjct: 234 ELWKKYGLTYLLITHDISVVRYMSSSVVVMYSGKIM-ESAPKHI 276 Score = 47.8 bits (112), Expect = 3e-07 Identities = 26/60 (43%), Positives = 36/60 (60%) Query: 5 LTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTID 64 +T LKK G V A+DG+S S+ KGEI ++G +G+GKTT + + L P G ID Sbjct: 15 ITTFYLKKVIGYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFID 74 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 62.0 bits (149), Expect = 1e-11 Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 35/204 (17%) Query: 20 LDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTIDGIDGLAHPDEVRSRI 79 L ++ SI +G + A++G NG+GKTT L++ + LL PD G +++G P V + + Sbjct: 7 LRDVTLSIPRG-VTAILGANGSGKTTLLKLAARLLKPDRG--SVEG------PRRVGAAL 57 Query: 80 SYLAEESLAYKHMTGEAYLRFMAGLYADSITREEEFFARGCEL---SGLGERLKDKISTY 136 YL F+ A+ + R +L +GL + T Sbjct: 58 Q--------------NPYLGFLGPTVAEDLARTAGGRGEALKLLREAGLEYASERSPYTL 103 Query: 137 SKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIRSLTEEGITVLLSSHNML 196 S G R L + A+ P ++DEPTSGLD + +LI L G+ VL++ H Sbjct: 104 SMGEARILSVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLIARL---GVPVLVAGH--- 157 Query: 197 EVEFLARRVG---IIHGGRLLAEG 217 +++F A G I+ GR+ G Sbjct: 158 DIDFAAAVAGWAVILRDGRVRVSG 181 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 51.2 bits (121), Expect = 2e-08 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 19/213 (8%) Query: 20 LDGLSFSIDKGEIYALIGPNGAGKTTTLRILSTLLVPDEGGFTIDGIDGLAHPDEVRSR- 78 L G+S +G I L GP G GK+T LR+ + L GG+ ++ P V Sbjct: 20 LRGVSLEAPRG-ITLLAGPTGGGKSTILRVAAGLATRIYGGYLRGEVEARGKPVLVPQDY 78 Query: 79 ----ISYLAEESLAYKHMTGEAYLRFMAGLYADSITREEEFFARGCELSGLGERLKDKIS 134 +S E L Y + +GL RE R E G+ + L ++S Sbjct: 79 DLFILSLTPREELEYCYEA--------SGLPPWEARREA---VRLAEELGIEDLLDRRVS 127 Query: 135 TYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQVRTLIRSLTEEGITVLLSSHN 194 S G +++ IA A+ + + ++DEP + D + L+R L EG+ V + H Sbjct: 128 KLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVESLIRLLRRLDVEGVVV--AEHR 185 Query: 195 MLEVEFLARRVGIIHGGRLLAEGTPQELKARSG 227 + + A V +++ GR G + ++ +G Sbjct: 186 VHYLLPAASSVYLVYDGRAKQLGPGEAVEVLAG 218 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 44.7 bits (104), Expect = 2e-06 Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 15/195 (7%) Query: 4 LLTVDGLKKRFGRVTALDGLSFSIDKGEIYALIGPNGAGKTTTLRIL--STLLVPDEGGF 61 +L G ++R L ++ +++ G + A++G +GAGKTT LR++ L + EG Sbjct: 440 VLRAFGAERRVVERYVLKDVNITVNPGSVAAVVGASGAGKTTLLRMILGKALGIGGEGYR 499 Query: 62 TIDGIDGLAHPDEVRSRISYLAEESLAYKHMTGEAYLRFMAGLYADSITREEEFFARGCE 121 G+ + + + + E S GE L +A D E + Sbjct: 500 PDSGVVKIPTNTKAAALLPGELEPSFG-----GETLLEHVASKLGDPGAAVEVLSS---- 550 Query: 122 LSGLGERL--KDKISTYSKGMTRKLLIARAVMMKPLLAILDEPTSGLDVENAVQV-RTLI 178 GLG+ + + S G + +A + +P L ++DE + LD A ++ R L Sbjct: 551 -VGLGDAIFFRASFGELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLTARRIARKLG 609 Query: 179 RSLTEEGITVLLSSH 193 + +GIT+++S++ Sbjct: 610 KLARSKGITLIVSTN 624 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 241,087 Number of Sequences: 1700 Number of extensions: 11299 Number of successful extensions: 163 Number of sequences better than 1.0e-04: 41 Number of HSP's better than 0.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 51 length of query: 240 length of database: 492,079 effective HSP length: 74 effective length of query: 166 effective length of database: 366,279 effective search space: 60802314 effective search space used: 60802314 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719367|ref|YP_003874899.1| ABC transporter [Spirochaeta thermophila DSM 6192] (438 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431648|ref|NP_148265.2| ABC transporter permease [Aeropyru... 42 2e-05 >gi|118431648|ref|NP_148265.2| ABC transporter permease [Aeropyrum pernix K1] Length = 406 Score = 42.4 bits (98), Expect = 2e-05 Identities = 92/440 (20%), Positives = 148/440 (33%), Gaps = 43/440 (9%) Query: 1 MRKFAI--LLKKEIQGLITPQVILSVVIMVIVFVMLGGILKDQFAKMSEEAHDLRLAQLP 58 MR +A+ +L KE+ L L+ V+ V+ V L G+ S ++ D+ + Sbjct: 1 MRLWAVKAILWKELLDLSRDYKTLAYVV-VLPLVALPGLAIFSGGLYSAQSMDVYIVDED 59 Query: 59 SRPITT--TGGLIAYLNEQGIPAFEEDDFSPRIFENPEAP--PRVLVFPSDFVEHLLSPE 114 I++ GL YL E G+P + E + P +V P F L + Sbjct: 60 GSEISSLFAEGLAEYL-ESGLPGVAVNVEILSGVEGFDTPFGSIAVVIPEGFSRGLEDLD 118 Query: 115 GESPEITLYLSLRNTAGILQITRLVPPES--FRTFLMEALRSVILTGGGGEQSPLLERYL 172 G + AG Q+ LV + F ++E+ S + G E +ER L Sbjct: 119 GRVSIRLVVTPGSPLAG--QVASLVEGYASLFEEAVVESRVSRLAEAAGVEVD--VERLL 174 Query: 173 EPARL-REKVVYNGRIAAVSPDVLIGYLINQNTILVLLLFMVSLFGAQFVATSIATEKES 231 +P + RE + + G A + + ++ LF V FV+ SI E+E Sbjct: 175 DPLEVEREYIGFGGGAAGARGEAVA----MSARVVAFSLFFVVNPAIVFVSDSIVGERER 230 Query: 232 KTLETLLSLPVPRSYIAISKMAAAGIMALLMVVIYLAGFTYYLDSFQGLQTSASAAQGSP 291 +TLE LL R I + K+AAA + L +AA Sbjct: 231 RTLEKLLLTGASRLEILVGKVAAAAALGL------------------------AAAAADS 266 Query: 292 DALSVTLALQHLGLVLPPWDEXXXXXXXXXXXXXXXGIALILGLFAEDIRGVQVVVTPIM 351 AL L L+L P GI + +E IR Q ++ Sbjct: 267 LALVAFFTLSGFSLLLSPLLVASWAASSALLVILTAGITAFISARSETIRSAQSGSFIVL 326 Query: 352 XXXXXXXXXXXXXXXXXXXXXXXXXXXXFPFTHAFISTSLLLADDYLAVGLGLGYQXXXX 411 PFTHA ++ D A + + Sbjct: 327 MVALAIYFSALVVDYSRLPAWLSILLQAIPFTHASLAVIKASVGDLAATTIHMAVLTGFT 386 Query: 412 XXXXXXXXXXXHTDRVLTLK 431 ++R++ L+ Sbjct: 387 ALFIAAAAREFSSERIILLR 406 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 375,702 Number of Sequences: 1700 Number of extensions: 15645 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 1 length of query: 438 length of database: 492,079 effective HSP length: 80 effective length of query: 358 effective length of database: 356,079 effective search space: 127476282 effective search space used: 127476282 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719368|ref|YP_003874900.1| arginyl-tRNA--protein transferase [Spirochaeta thermophila DSM 6192] (244 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 272,482 Number of Sequences: 1700 Number of extensions: 12620 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 244 length of database: 492,079 effective HSP length: 74 effective length of query: 170 effective length of database: 366,279 effective search space: 62267430 effective search space used: 62267430 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719369|ref|YP_003874901.1| hypothetical protein STHERM_c16900 [Spirochaeta thermophila DSM 6192] (71 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,166 Number of Sequences: 1700 Number of extensions: 1888 Number of successful extensions: 2 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 71 length of database: 492,079 effective HSP length: 42 effective length of query: 29 effective length of database: 420,679 effective search space: 12199691 effective search space used: 12199691 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719370|ref|YP_003874902.1| hypothetical protein STHERM_c16910 [Spirochaeta thermophila DSM 6192] (121 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,778 Number of Sequences: 1700 Number of extensions: 2932 Number of successful extensions: 4 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 121 length of database: 492,079 effective HSP length: 67 effective length of query: 54 effective length of database: 378,179 effective search space: 20421666 effective search space used: 20421666 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719371|ref|YP_003874903.1| HEPN domain-containing protein [Spirochaeta thermophila DSM 6192] (127 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431183|ref|NP_147472.2| hypothetical protein APE_0760.1 [A... 44 1e-06 >gi|118431183|ref|NP_147472.2| hypothetical protein APE_0760.1 [Aeropyrum pernix K1] Length = 135 Score = 43.9 bits (102), Expect = 1e-06 Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 3/98 (3%) Query: 1 MNEQVEKWLLKAEHDLIVARNETKIEGAPTDVICFHCQQAVEKYLKAFLTHHQVDMRRTH 60 M E+ WL A DL R E ++ F QQA EK LK L + D +TH Sbjct: 1 MREKAWLWLRAARRDL--GRAEYSLKVGDRAAATFWSQQAAEKALKGLLLAFKGDYPKTH 58 Query: 61 NIAELLTLCIERDRDFEELKKRRIYELTIYAVQVRYPD 98 +I LL + D E + +ELT Y RYPD Sbjct: 59 SIRRLLE-DLGLDLGLSEGELEDAFELTQYYYLSRYPD 95 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 108,949 Number of Sequences: 1700 Number of extensions: 3705 Number of successful extensions: 5 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 1 length of query: 127 length of database: 492,079 effective HSP length: 67 effective length of query: 60 effective length of database: 378,179 effective search space: 22690740 effective search space used: 22690740 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719372|ref|YP_003874904.1| hypothetical protein STHERM_c16950 [Spirochaeta thermophila DSM 6192] (371 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.143 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 346,803 Number of Sequences: 1700 Number of extensions: 13776 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 371 length of database: 492,079 effective HSP length: 78 effective length of query: 293 effective length of database: 359,479 effective search space: 105327347 effective search space used: 105327347 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719373|ref|YP_003874905.1| hypothetical protein STHERM_c16960 [Spirochaeta thermophila DSM 6192] (216 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.132 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 175,096 Number of Sequences: 1700 Number of extensions: 6765 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 216 length of database: 492,079 effective HSP length: 73 effective length of query: 143 effective length of database: 367,979 effective search space: 52620997 effective search space used: 52620997 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719374|ref|YP_003874906.1| hypothetical protein STHERM_c16970 [Spirochaeta thermophila DSM 6192] (133 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.143 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 151,045 Number of Sequences: 1700 Number of extensions: 6644 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 133 length of database: 492,079 effective HSP length: 68 effective length of query: 65 effective length of database: 376,479 effective search space: 24471135 effective search space used: 24471135 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719375|ref|YP_003874907.1| hypothetical protein STHERM_c16980 [Spirochaeta thermophila DSM 6192] (208 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.133 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 220,674 Number of Sequences: 1700 Number of extensions: 10061 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 208 length of database: 492,079 effective HSP length: 73 effective length of query: 135 effective length of database: 367,979 effective search space: 49677165 effective search space used: 49677165 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719376|ref|YP_003874908.1| hypothetical protein STHERM_c16990 [Spirochaeta thermophila DSM 6192] (75 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.142 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,398 Number of Sequences: 1700 Number of extensions: 2448 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 75 length of database: 492,079 effective HSP length: 46 effective length of query: 29 effective length of database: 413,879 effective search space: 12002491 effective search space used: 12002491 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719377|ref|YP_003874909.1| hypothetical protein STHERM_c17000 [Spirochaeta thermophila DSM 6192] (783 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 738,223 Number of Sequences: 1700 Number of extensions: 33446 Number of successful extensions: 163 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 163 Number of HSP's gapped (non-prelim): 0 length of query: 783 length of database: 492,079 effective HSP length: 84 effective length of query: 699 effective length of database: 349,279 effective search space: 244146021 effective search space used: 244146021 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719378|ref|YP_003874910.1| hypothetical protein STHERM_c17010 [Spirochaeta thermophila DSM 6192] (52 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.465 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,908 Number of Sequences: 1700 Number of extensions: 1525 Number of successful extensions: 3 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 52 length of database: 492,079 effective HSP length: 25 effective length of query: 27 effective length of database: 449,579 effective search space: 12138633 effective search space used: 12138633 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719379|ref|YP_003874911.1| hypothetical protein STHERM_c17020 [Spirochaeta thermophila DSM 6192] (157 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 152,126 Number of Sequences: 1700 Number of extensions: 5858 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 157 length of database: 492,079 effective HSP length: 70 effective length of query: 87 effective length of database: 373,079 effective search space: 32457873 effective search space used: 32457873 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719380|ref|YP_003874912.1| GTPase YjeQ [Spirochaeta thermophila DSM 6192] (310 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 310,875 Number of Sequences: 1700 Number of extensions: 14467 Number of successful extensions: 82 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82 Number of HSP's gapped (non-prelim): 0 length of query: 310 length of database: 492,079 effective HSP length: 77 effective length of query: 233 effective length of database: 361,179 effective search space: 84154707 effective search space used: 84154707 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719381|ref|YP_003874913.1| glutamate racemase [Spirochaeta thermophila DSM 6192] (286 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 286,158 Number of Sequences: 1700 Number of extensions: 12526 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 286 length of database: 492,079 effective HSP length: 76 effective length of query: 210 effective length of database: 362,879 effective search space: 76204590 effective search space used: 76204590 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719382|ref|YP_003874914.1| hypothetical protein STHERM_c17060 [Spirochaeta thermophila DSM 6192] (93 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.140 0.486 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,465 Number of Sequences: 1700 Number of extensions: 2317 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 93 length of database: 492,079 effective HSP length: 61 effective length of query: 32 effective length of database: 388,379 effective search space: 12428128 effective search space used: 12428128 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719383|ref|YP_003874915.1| pentapeptide protein [Spirochaeta thermophila DSM 6192] (219 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.139 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 176,067 Number of Sequences: 1700 Number of extensions: 6000 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 219 length of database: 492,079 effective HSP length: 73 effective length of query: 146 effective length of database: 367,979 effective search space: 53724934 effective search space used: 53724934 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719384|ref|YP_003874916.1| beta lactamase like protein [Spirochaeta thermophila DSM 6192] (197 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601295|ref|NP_147830.1| hypothetical protein APE_1260 [Aero... 52 8e-09 >gi|14601295|ref|NP_147830.1| hypothetical protein APE_1260 [Aeropyrum pernix K1] Length = 209 Score = 52.4 bits (124), Expect = 8e-09 Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 26/191 (13%) Query: 14 NTYLVGPEEGGDAILVDPGCFDEYLLNLVEDHGYYVRHVLVTHGHRNHFQGIKTIL-RIY 72 NTY+ GG+ ++VDPG +L +E G V +THGH +H G++ + R Sbjct: 15 NTYVAAA--GGECLVVDPG--GPEVLEALERLGCRDIVVALTHGHFDHVAGVEHLAARGA 70 Query: 73 DATVYANTPHLDGVLCEM------------------VHEGRRLDLGWVEVRVLSLPGHSR 114 + TP + ++ + +G L + ++ + PGHS Sbjct: 71 VVAAHPQTPRVAEAYADLGVKMGYLKGVPRISVDVELVDGSTLRAAGLSLKAIHTPGHSP 130 Query: 115 DSVAYV--VGPYVFTGDALTSGKVGSPVNPQGKALLIAYLNQKLLA-LPGHYIIFPGHGP 171 D + FTGD + G +G G +A +++ LP + PGHGP Sbjct: 131 DHIVLYDQARGLAFTGDLIFRGSIGRVDIALGDGEAMARSLARIVRELPRGTRLLPGHGP 190 Query: 172 PTTVRTEAAFN 182 TT+ E N Sbjct: 191 ETTLEYEILHN 201 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.144 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 250,899 Number of Sequences: 1700 Number of extensions: 11907 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 1 length of query: 197 length of database: 492,079 effective HSP length: 72 effective length of query: 125 effective length of database: 369,679 effective search space: 46209875 effective search space used: 46209875 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719385|ref|YP_003874917.1| ribosomal large subunit pseudouridine synthase D [Spirochaeta thermophila DSM 6192] (319 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 357,781 Number of Sequences: 1700 Number of extensions: 17169 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 319 length of database: 492,079 effective HSP length: 77 effective length of query: 242 effective length of database: 361,179 effective search space: 87405318 effective search space used: 87405318 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719386|ref|YP_003874918.1| hypothetical protein STHERM_c17090 [Spirochaeta thermophila DSM 6192] (168 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.144 0.469 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 118,559 Number of Sequences: 1700 Number of extensions: 4419 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 168 length of database: 492,079 effective HSP length: 71 effective length of query: 97 effective length of database: 371,379 effective search space: 36023763 effective search space used: 36023763 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719387|ref|YP_003874919.1| pyridoxal 5'-phosphate-dependent enzyme [Spirochaeta thermophila DSM 6192] (230 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 246,124 Number of Sequences: 1700 Number of extensions: 11322 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 230 length of database: 492,079 effective HSP length: 74 effective length of query: 156 effective length of database: 366,279 effective search space: 57139524 effective search space used: 57139524 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719388|ref|YP_003874920.1| pyridoxine biosynthesis protein [Spirochaeta thermophila DSM 6192] (301 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430952|ref|NP_147079.2| pyridoxal biosynthesis lyase PdxS ... 317 2e-88 >gi|118430952|ref|NP_147079.2| pyridoxal biosynthesis lyase PdxS [Aeropyrum pernix K1] Length = 353 Score = 317 bits (812), Expect = 2e-88 Identities = 169/290 (58%), Positives = 211/290 (72%), Gaps = 2/290 (0%) Query: 13 TWRTKVGLAEMLKGGVIMDVVTPEQARIAEDAGAAAVMALERVPADIRAHGGVARMSDPE 72 T K+G KGGV+MDV EQA IAEDAGA AVM L+++P D+R GGVARM+D + Sbjct: 61 TVAVKLGFPIYQKGGVVMDVTNVEQAGIAEDAGAVAVMVLDKLPYDVRKAGGVARMADVK 120 Query: 73 IIIRIQEAVSIPVMAKCRIGHFVEAQILEALGVDFIDESEVLTPADEEHHIWKHDFKVPF 132 +I ++ +++IPVMAK RIGH+ EA ILE++GVD IDESEVLTP DE+HHI K FKVPF Sbjct: 121 VIEQVMSSITIPVMAKVRIGHYYEAMILESIGVDMIDESEVLTPVDEKHHINKWLFKVPF 180 Query: 133 VCGCRDLGEALRRIGEGAAMIRTKGEAGTGDVVEAVRHMRAVMNGIRRLTTLSDEQLMTE 192 V G R L EALRRI EGA+MIRTKGEAGTG+V EAVRHM+ +M I RL LS E+ + Sbjct: 181 VNGARSLAEALRRIAEGASMIRTKGEAGTGNVAEAVRHMKLIMGDIWRLRGLSAEERLRV 240 Query: 193 AKRLGAPFDLLHEVAKTGKLPVPNFSAGGIATPADAALMMQLGAEAVFVGSGIFKSENPA 252 A+ G P L+ A+ G+LPV NF+AGGIATPADAALMM LGA+ VFVGSGIFKS +P+ Sbjct: 241 AREYGVPHQLVDLTARLGRLPVVNFAAGGIATPADAALMMWLGADGVFVGSGIFKSSDPS 300 Query: 253 KRAKAIVEAVTYYNDPKKLAEISRGLGE--PMHGIEVRTIEEGRQLAHRG 300 +RA AIV A + ++DP+ +AE R + E M GI++R + L RG Sbjct: 301 ERAAAIVLATSMWDDPEAVAEAQRMVSEAKSMMGIDIRKLSPEELLQVRG 350 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 311,077 Number of Sequences: 1700 Number of extensions: 13653 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71 Number of HSP's gapped (non-prelim): 1 length of query: 301 length of database: 492,079 effective HSP length: 76 effective length of query: 225 effective length of database: 362,879 effective search space: 81647775 effective search space used: 81647775 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719389|ref|YP_003874921.1| glutamine amidotransferase [Spirochaeta thermophila DSM 6192] (195 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430951|ref|NP_147078.2| glutamine amidotransferase subunit... 148 1e-37 >gi|118430951|ref|NP_147078.2| glutamine amidotransferase subunit PdxT [Aeropyrum pernix K1] Length = 203 Score = 148 bits (373), Expect = 1e-37 Identities = 86/202 (42%), Positives = 121/202 (59%), Gaps = 15/202 (7%) Query: 1 MRVGILGLQGDFALHQRMLAS----LGV--ETRIVRSMEDLEGCASLVIPGGESTTMGGL 54 MR+G+LG QG H ML LGV E +V+ EDL+G ++IPGGESTT+G L Sbjct: 1 MRIGVLGYQGGVYEHVYMLRRTFDRLGVHGEAVVVKKPEDLKGLDGVIIPGGESTTIGIL 60 Query: 55 LVRFGMLEALSARIREGLPVFGTCAGAILLA----REIIGYPDQPRLGVLEISIERNAYG 110 R G+LE L ++ GLP GTCAGAI+LA +++G QP LGV+ + + RN +G Sbjct: 61 AKRLGVLEPLREQVLNGLPAMGTCAGAIILAGKVRDKVVGEKSQPLLGVMRVEVVRNFFG 120 Query: 111 RQKESFETDVLIPSLREQPYRAVFIRAPIIRAVGPGVEVLAWF----EDLPILVRRGHIL 166 RQ+ESFE D+ I L + +R VFIR+P I A +++W + + + +G +L Sbjct: 121 RQRESFEADLEIEGL-DGRFRGVFIRSPAITAAESPARIISWLDYNGQRVGVAAVQGPLL 179 Query: 167 AATFHPELTDDPCIHRYFLEQV 188 A +FHPELT D +H +L V Sbjct: 180 ATSFHPELTGDTRLHELWLRLV 201 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.144 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 219,752 Number of Sequences: 1700 Number of extensions: 10476 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 1 length of query: 195 length of database: 492,079 effective HSP length: 72 effective length of query: 123 effective length of database: 369,679 effective search space: 45470517 effective search space used: 45470517 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719390|ref|YP_003874922.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Spirochaeta thermophila DSM 6192] (301 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.133 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 256,355 Number of Sequences: 1700 Number of extensions: 9471 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 301 length of database: 492,079 effective HSP length: 76 effective length of query: 225 effective length of database: 362,879 effective search space: 81647775 effective search space used: 81647775 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719391|ref|YP_003874923.1| polyprenyl synthetase [Spirochaeta thermophila DSM 6192] (376 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431580|ref|NP_148152.2| farnesylgeranyl diphosphate syntha... 60 7e-11 >gi|118431580|ref|NP_148152.2| farnesylgeranyl diphosphate synthase [Aeropyrum pernix K1] Length = 332 Score = 60.5 bits (145), Expect = 7e-11 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 1/82 (1%) Query: 209 VRLEDVLRVYRYKTGRYTFSVPLSLGALLAGADEGVRGALEEVGELLGVVFQIRDDELGL 268 V + D L + R KTG +GA+ AGA + + EVG G+ FQIRDD LG+ Sbjct: 168 VDVADYLNMVRLKTGAL-IEAAARIGAVAAGAGSEIEKMMGEVGMNAGIAFQIRDDILGV 226 Query: 269 FGSEEEIGKPAGSDVREGKRTV 290 G + GKP +D+R GK+T+ Sbjct: 227 IGDPKVTGKPVYNDLRRGKKTL 248 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 330,877 Number of Sequences: 1700 Number of extensions: 15347 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 1 length of query: 376 length of database: 492,079 effective HSP length: 78 effective length of query: 298 effective length of database: 359,479 effective search space: 107124742 effective search space used: 107124742 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719392|ref|YP_003874924.1| FKBP-type peptidyl-prolyl cis-trans isomerase [Spirochaeta thermophila DSM 6192] (194 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600774|ref|NP_147295.1| FKBP-type peptidyl-prolyl cis-trans... 51 2e-08 >gi|14600774|ref|NP_147295.1| FKBP-type peptidyl-prolyl cis-trans isomerase [Aeropyrum pernix K1] Length = 268 Score = 50.8 bits (120), Expect = 2e-08 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 5/119 (4%) Query: 68 VIIGRGMLIPGLEEGIMGMVAGQERTVVVPPGKGYGSRHEKAVQTFSWDELPEMDRTTLR 127 VI+G+ L+ LE+ + + G+ R V VPP + +G ++ V L M+ +R Sbjct: 52 VIVGKTSLLGPLEKVLKELDVGERREVEVPPEEAFGEYKKELVVRVPVKRLRRMN-IPVR 110 Query: 128 KGALIAVNTKQGIVPATVVSVSDEGLTLDFNHPLAGKTLIFNVHILTVRPPSPEEERIL 186 G + ++G ++ V++ +DFNHPLAGK L V ++ ++ RIL Sbjct: 111 VGEEVEAGGRRG----KIIRVTERFAFIDFNHPLAGKKLKIEVEVVGKVDSVEDKARIL 165 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 196,866 Number of Sequences: 1700 Number of extensions: 8958 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 1 length of query: 194 length of database: 492,079 effective HSP length: 72 effective length of query: 122 effective length of database: 369,679 effective search space: 45100838 effective search space used: 45100838 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719393|ref|YP_003874925.1| membrane spanning protein [Spirochaeta thermophila DSM 6192] (430 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.332 0.148 0.461 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 437,091 Number of Sequences: 1700 Number of extensions: 21059 Number of successful extensions: 99 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99 Number of HSP's gapped (non-prelim): 0 length of query: 430 length of database: 492,079 effective HSP length: 79 effective length of query: 351 effective length of database: 357,779 effective search space: 125580429 effective search space used: 125580429 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719394|ref|YP_003874926.1| acetolactate synthase large subunit [Spirochaeta thermophila DSM 6192] (571 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602111|ref|NP_148659.1| acetolactate synthase [Aeropyrum pe... 186 1e-48 >gi|14602111|ref|NP_148659.1| acetolactate synthase [Aeropyrum pernix K1] Length = 556 Score = 186 bits (472), Expect = 1e-48 Identities = 150/550 (27%), Positives = 263/550 (47%), Gaps = 30/550 (5%) Query: 9 AEVVIDLIHRHGVEYIFGIPGGAAIPLYDALVD--SGIKFILTRHEQGATHMADGYARAS 66 AE + + GV I+GI G + + DAL D I F+ TRHEQ A AD R++ Sbjct: 5 AEAIARGLVAAGVARIYGIIGTSIVDFVDALYDYRDRIDFVTTRHEQVAVSAADAEYRST 64 Query: 67 GKAAVVLVTSGPGATNTVTGIFTAYMDSSPVVVITGQQTRNNLGLDAFQEADVSGITYPI 126 + A V +GPG NT+ + A D P+++++G R GLDA+ E D + I P+ Sbjct: 65 RRLAAAAVHAGPGFLNTLISLGIAAKDRVPLLLVSGGVRRRLRGLDAWLEVDQASIARPL 124 Query: 127 VKHSYLVKNAKELPRIVREAFHLATTGRPGPVLIDIPKDVSNTPIEPDYDEEFHLEGYKV 186 VK+ ++ + E+ ++ EA A + GP +++IP+D+ + + + V Sbjct: 125 VKYYGVLDSPGEVLDVLVEALRSALSPPMGPAVVEIPEDLWRSQTTVSGEAFGTIPKAPV 184 Query: 187 QIEGDMEKIEEAARLLQEAKRPVLLVGHGAIISG--AEKAVRQLAEKLQIPVTTTLLGKG 244 + G + +L +A+RPV+L + S +++ + +LAE + + G+G Sbjct: 185 EGPGLGGHGKTLFSMLMQARRPVILATGELVYSPGFSQEMLLRLAEATGAYIVVSGNGRG 244 Query: 245 AFPETHELSLGMLGM-HGTAYANMAVDNCDLIVSIGSRWDDRITGDVSRFCVNAKKIHID 303 A PE H LG +G G+ A+ A++N D+++++G +DD IT + + Sbjct: 245 ACPEDHPRCLGRIGFGGGSLAADRALENSDMVLALGHEFDD-ITTYGYNMLPQGDVVMVS 303 Query: 304 IDP---AEINKIIKVDVGIVGDARHVVEALVGITRRGDTTDWLKQINRWKRQYPL----K 356 DP A V+ V + E G+ R +W + + ++R++ + Sbjct: 304 QDPSAKARPRYYDLVNANPVRALEELSEMAEGVRR---LEEWDRMVQEFRREWGVMLEEA 360 Query: 357 YRKEGKL-KAQHVIEELYRQTGGKAVVVTDVGQHQMWAAQYYKVDSPRNWISSGGAGTMG 415 R+E +L L + VV G H ++ + ++ +P +++++ G MG Sbjct: 361 VRRETRLANPDRFFRLLNMRIPRNRVVSGGQGTHILYVYNHIQIYTPGSFLAATNLGAMG 420 Query: 416 FGLPAAIGAQFARPDETVVAIVGDGGFQMTFFELATAVIHKLPIKIVVINN-----RYLG 470 + LPA IG+ A P + + GDG MT ++ T V L +KIV++N+ YL Sbjct: 421 YALPAVIGSSKALPGGYHLCVAGDGELMMTVQDIETIVREGLDVKIVLVNDDSYKVLYLR 480 Query: 471 MVRQWQHLFYENRLSGVDLEGSPDFVKLARSFGCKAFRLRRPGDVKRVVEQALSYNDGPC 530 V Q YE LS +PDF +LA +FG + + R GD + +E S GP Sbjct: 481 QVLQKGGRVYETLLS------NPDFSRLAEAFGVRYASVSRSGDEEEGLEALTS--PGPA 532 Query: 531 LIDAEVEKEE 540 L++ +V++++ Sbjct: 533 LVEVKVDRDD 542 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 601,704 Number of Sequences: 1700 Number of extensions: 28996 Number of successful extensions: 117 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110 Number of HSP's gapped (non-prelim): 1 length of query: 571 length of database: 492,079 effective HSP length: 82 effective length of query: 489 effective length of database: 352,679 effective search space: 172460031 effective search space used: 172460031 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719395|ref|YP_003874927.1| acetolate synthase, small subunit [Spirochaeta thermophila DSM 6192] (180 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 158,304 Number of Sequences: 1700 Number of extensions: 6068 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 180 length of database: 492,079 effective HSP length: 71 effective length of query: 109 effective length of database: 371,379 effective search space: 40480311 effective search space used: 40480311 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719396|ref|YP_003874928.1| chemotaxis protein CheY [Spirochaeta thermophila DSM 6192] (145 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 130,668 Number of Sequences: 1700 Number of extensions: 5036 Number of successful extensions: 16 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 145 length of database: 492,079 effective HSP length: 69 effective length of query: 76 effective length of database: 374,779 effective search space: 28483204 effective search space used: 28483204 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719397|ref|YP_003874929.1| chemotaxis protein CheC [Spirochaeta thermophila DSM 6192] (156 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 132,277 Number of Sequences: 1700 Number of extensions: 4441 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 156 length of database: 492,079 effective HSP length: 70 effective length of query: 86 effective length of database: 373,079 effective search space: 32084794 effective search space used: 32084794 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719398|ref|YP_003874930.1| chemotaxis protein CheW [Spirochaeta thermophila DSM 6192] (458 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 422,627 Number of Sequences: 1700 Number of extensions: 17376 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 458 length of database: 492,079 effective HSP length: 80 effective length of query: 378 effective length of database: 356,079 effective search space: 134597862 effective search space used: 134597862 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719399|ref|YP_003874931.1| chemotaxis protein CheA [Spirochaeta thermophila DSM 6192] (790 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 720,272 Number of Sequences: 1700 Number of extensions: 32645 Number of successful extensions: 130 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 130 Number of HSP's gapped (non-prelim): 0 length of query: 790 length of database: 492,079 effective HSP length: 84 effective length of query: 706 effective length of database: 349,279 effective search space: 246590974 effective search space used: 246590974 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719400|ref|YP_003874932.1| glycoside hydrolase [Spirochaeta thermophila DSM 6192] (615 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 635,874 Number of Sequences: 1700 Number of extensions: 29396 Number of successful extensions: 86 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86 Number of HSP's gapped (non-prelim): 0 length of query: 615 length of database: 492,079 effective HSP length: 82 effective length of query: 533 effective length of database: 352,679 effective search space: 187977907 effective search space used: 187977907 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719401|ref|YP_003874933.1| oligopeptide/dipeptide ABC transporter ATP binding protein [Spirochaeta thermophila DSM 6192] (317 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 234 2e-63 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 204 3e-54 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 182 1e-47 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 176 7e-46 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 169 6e-44 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 157 3e-40 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 147 4e-37 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 144 2e-36 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 115 2e-27 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 114 2e-27 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 110 4e-26 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 103 4e-24 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 96 2e-21 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 95 2e-21 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 95 3e-21 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 82 1e-17 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 81 4e-17 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 78 3e-16 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 78 3e-16 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 74 6e-15 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 73 8e-15 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 70 5e-14 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 68 3e-13 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 67 6e-13 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 65 2e-12 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 65 2e-12 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 64 4e-12 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 63 1e-11 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 62 1e-11 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 62 2e-11 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 60 5e-11 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 58 4e-10 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 54 5e-09 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 53 1e-08 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 52 2e-08 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 50 7e-08 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 49 2e-07 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 48 4e-07 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 42 3e-05 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 234 bits (597), Expect = 2e-63 Identities = 129/302 (42%), Positives = 183/302 (60%), Gaps = 12/302 (3%) Query: 16 FGRKTLRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLL 75 F R ++AVD+V+ I G+ + L+GESGSGKTT G++ILRL + G+I FDG D+ L Sbjct: 44 FTRAYVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKL 103 Query: 76 KGASLKEYYRHVQGVFQDPFSSYNPIFKADRIFSLVKEEF-YPSVPASEWKEKVEGALRA 134 +G LKE+ R Q +FQDP+ S NP IF+L+ E + + +E + L Sbjct: 104 RGRGLKEFRRRAQIIFQDPYGSLNP---RKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQ 160 Query: 135 VGLNPPDVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIGD 194 VGLN L +YPH+ SGGQ QR IAR L L +F+V DE S LD S + +LNL+ D Sbjct: 161 VGLNETH-LYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKD 219 Query: 195 LKAR-GLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKVYHETLHPYTKMLMAAVP 253 L+ + L+ LFI+HDL + Y+ D +MY GK+VE G E+V+ + LHPYTK+L+ ++P Sbjct: 220 LQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEVFEKPLHPYTKVLLESIP 279 Query: 254 RLDEKWEDVELRLKEQAGDGS-----LGCPYYGRCPVAEDRCRVENPPLHRVDEDHWVAC 308 D + R++ + S GC + RCP+A D+C +E PPL V+ HWVAC Sbjct: 280 VPDPEVAKRRSRIRIKGEPPSPINPPSGCRFRTRCPIAVDKC-LEEPPLEEVERGHWVAC 338 Query: 309 WK 310 W+ Sbjct: 339 WR 340 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 204 bits (518), Expect = 3e-54 Identities = 133/332 (40%), Positives = 182/332 (54%), Gaps = 40/332 (12%) Query: 18 RKTLRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGK------- 70 ++ ++AVD VSF I GEV L+GESG GKTT GK ILRL+ + G++ F K Sbjct: 44 QRFVKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEEL 103 Query: 71 -------------DISLLKGASLKEYYRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYP 117 D+ + K R +Q V+QDP+ S NP F RI L Sbjct: 104 ERRGVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRI--LEDPLLIH 161 Query: 118 SVP-ASEWKEKVEGALRAVGLNPP-DVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADE 175 S+ A E +E V L AV L P D +++YPHQLSGGQ QR IARA +L+ +VADE Sbjct: 162 SIGNAREREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADE 221 Query: 176 IISMLDASTRVDVLNLI-GDLKARGLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTE 234 +SMLD S R ++L L+ G + G S+LFITHDLA+ YI D+ +MY GK+VE G Sbjct: 222 PVSMLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDAR 281 Query: 235 KVYHETLHPYTKMLMAAVPRLD----EKWEDVELRLK-EQAGDGSLGCPYYGRCPVAE-- 287 ++ +HPYTK L+AA+P D +K +V ++ + A GC ++ RC E Sbjct: 282 RIIERPIHPYTKALVAAIPEPDPSNRKKLREVPIKGEIPSAAAIPPGCRFHPRCVEYEQD 341 Query: 288 -----DRCRVENPPLHRV---DEDHWVACWKY 311 + C V+ PPL R +ED V+CW+Y Sbjct: 342 MDRLREMCPVKEPPLKRPTEGEEDRRVSCWRY 373 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 182 bits (462), Expect = 1e-47 Identities = 113/305 (37%), Positives = 172/305 (56%), Gaps = 19/305 (6%) Query: 18 RKTLRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIG----ISEGKILFDGKDIS 73 R ++AVD VSF + GEV+ + GESGSGK+T+ IL L+ I G+I+ DG D++ Sbjct: 19 RGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVT 78 Query: 74 LLKGASL--KEYYRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSVPASEWKEKVEGA 131 + A L K ++ V VFQ + P++ R V + + V E +++V Sbjct: 79 SMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQ-IHRGVGRHEARQRVYEL 137 Query: 132 LRAVGLNPPDVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNL 191 L +VGL+ + ++YPH+LSGGQ QR +IA AL L+ ++ADE + LD + +LNL Sbjct: 138 LESVGLHR-SIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNL 196 Query: 192 IGDLK-ARGLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKVYHETLHPYTKMLMA 250 + L + LS++ ITHDL++ + + +IMY GK+ E G ++ V+ + HPYT+ L+ Sbjct: 197 LKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEYGPSDAVFTKPQHPYTQALLK 256 Query: 251 AVPRLDEKWEDVELRLKEQAG------DGSLGCPYYGRCPVAEDRCRVENPPLHRVDEDH 304 A+P+L + RL G + GC ++ RCP A DRC E PPL RV + H Sbjct: 257 AIPKLRGPID----RLAYIPGSPPDLRNPPPGCRFHPRCPKAFDRCSREEPPLFRVGDGH 312 Query: 305 WVACW 309 ACW Sbjct: 313 LSACW 317 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 176 bits (446), Expect = 7e-46 Identities = 111/298 (37%), Positives = 162/298 (54%), Gaps = 14/298 (4%) Query: 21 LRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLI----GISEGKILFDGKDISLLK 76 +RAVD VS + GE +S++GESGSGK+T+ I RLI I G+IL+ G D+ L Sbjct: 20 VRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRILYSGVDLLSLA 79 Query: 77 GASLKEYY-RHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSVPASEWKEKVEGALRAV 135 G L+ Y R + VFQDP + +P + E + SE + AL V Sbjct: 80 GEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLASSGSEAESMAGDALELV 139 Query: 136 GLNPPDVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIGDL 195 G+ P D + YPHQLSGGQ QR IA A+ L+ K L+ADE + LD + +++L+ L Sbjct: 140 GI-PRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKIMDLMKKL 198 Query: 196 KA-RGLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKVYHETLHPYTKMLMAAVPR 254 + RGL+V+ +THD+ L D+ +MY G++VE+G E V +HPYT+ML+ +VP Sbjct: 199 QEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDVVSNPIHPYTEMLIKSVP- 257 Query: 255 LDEKWEDVELR----LKEQAGDGSLGCPYYGRCPVAEDRCRVENPPLHRVDEDHWVAC 308 + WED E++ + GC ++ RCP+ + C P L VD +C Sbjct: 258 --DPWEDREVKPIPGSPPDLRNPPPGCRFHPRCPLRQPLCTNTRPSLRMVDGGRGHSC 313 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 169 bits (429), Expect = 6e-44 Identities = 101/283 (35%), Positives = 156/283 (55%), Gaps = 9/283 (3%) Query: 21 LRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLKGASL 80 +RAVD V I +GEV++++GESG GKTT+GK I+ + S+G I + G+ ++ + A Sbjct: 35 VRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARD 94 Query: 81 KEYYRHVQGVFQDPFSSYNPIFK-ADRIFSLVKEEFYPSVPASEWKEKVEGALRAVGLNP 139 + R +Q VFQDP+ S +P+ D++ + + E + + L VGL P Sbjct: 95 RRLRRKLQMVFQDPYKSLDPLMPVGDQVAEPL--VIHGLARGEEARRRAVEMLETVGLTP 152 Query: 140 -PDVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIGDLKAR 198 + + PHQLSGGQ QR IAR L+L+ + +VADE +SM+D S R +L+LI D R Sbjct: 153 GREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRR 212 Query: 199 -GLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKVYHETLHPYTKMLMAAVPRLDE 257 G +++ ITHD+A+ + D+ +MY GK+VE+G V HPYT L+ + P + Sbjct: 213 TGATIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVIENPRHPYTAALVTSTPSISR 272 Query: 258 KWEDVELRLKEQAGDGSL---GCPYYGRCPVAEDRCRVENPPL 297 + + + GC ++ RCP+A CR P L Sbjct: 273 R-RPPRFPISGEVPSAVAIPPGCRFHPRCPLASSLCRSREPAL 314 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 157 bits (397), Expect = 3e-40 Identities = 107/310 (34%), Positives = 157/310 (50%), Gaps = 49/310 (15%) Query: 21 LRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRL---------IGISEGKI------ 65 ++AVD VS ++ GE++ ++GESGSGKTT+ K I+ L I I +G++ Sbjct: 27 VKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELEEAVSI 86 Query: 66 --------------------LFDGKDISLLKGASLKEYYRHVQGVFQDPFSSYNPIFKAD 105 + D + ++ K++ R VQ V QDP+SS NP K Sbjct: 87 YEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMKVG 146 Query: 106 RIFSLVKEEFYPSVPASEWKEKVEGALRAVGLNPPDVLNKYPHQLSGGQLQRFLIARALL 165 I + K +V L AVGL + ++YP++LSGGQ QR IARAL Sbjct: 147 EIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGK-EFADRYPYELSGGQRQRVAIARALA 205 Query: 166 LDVKFLVADEIISMLDASTRVDVLNLIGDL-KARGLSVLFITHDLALGYYIGDKAVIMYK 224 L+ K LV DE S LD S + +L L+ +L K GL+ L ITHD+++ Y+ V+MY Sbjct: 206 LNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMYS 265 Query: 225 GKVVEMGSTEKVYHETLHPYTKMLMAAVPRLDEKWEDVELRLKEQAGDGS--------LG 276 GK++E ++ LHPYTK+L++AVP D + R+KE G +G Sbjct: 266 GKIMESAPKHILFTNPLHPYTKLLLSAVPIPDPR----SRRIKEFKDIGEPPNPAKPPVG 321 Query: 277 CPYYGRCPVA 286 C + RCP+A Sbjct: 322 CRFVTRCPIA 331 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 147 bits (370), Expect = 4e-37 Identities = 106/312 (33%), Positives = 161/312 (51%), Gaps = 32/312 (10%) Query: 21 LRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLI----GISEGKILF---DGKDIS 73 ++A++DVSF I GE L+GE+G GK+ + + RLI I EGKI + G+ + Sbjct: 26 VKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGRIVEGKIYYYPEPGRRVD 85 Query: 74 LLKGASLKEY-YRHVQG-----VFQDPFSSYNPIFKADRIFSLVKEEFYPSVPASEWKEK 127 ++ SL E R ++G +FQDP ++ +P++ I V E + + Sbjct: 86 IM---SLDEKELRRIRGEEIAYIFQDPSAALDPLYT---IGYQVGETM---LAHGRVRSL 136 Query: 128 VEGALRAVGL-------NPPDVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISML 180 EG RAVG+ +P + YPH+LSGG QR +I +L K L+ADE + L Sbjct: 137 REGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLIADEPTTAL 196 Query: 181 DASTRVDVLNLIGDLKAR-GLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKVYHE 239 D + + +++L+ LK GL++L ITH+L L D+ +MY G +VE ++++ Sbjct: 197 DVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEEAPVDELFSN 256 Query: 240 TLHPYTKMLMAAVPRLDEKWEDVE--LRLKEQAGDGSLGCPYYGRCPVAEDRCRVENPPL 297 LHPYT+ L+ AVP K E++E GC ++ RCP+A DRC E P L Sbjct: 257 PLHPYTRALIRAVPNPLAKIENLEHIPGTVPNLITPPPGCRFHPRCPLAFDRCSREKPLL 316 Query: 298 HRVDEDHWVACW 309 H ACW Sbjct: 317 KEYSPGHKAACW 328 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 144 bits (364), Expect = 2e-36 Identities = 94/304 (30%), Positives = 164/304 (53%), Gaps = 24/304 (7%) Query: 21 LRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIG----ISEGKILFD---GKDIS 73 + A+D V D+ GE+++++GESG GK+T+ + I R++ I +G I+ + G + Sbjct: 22 VNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNTVD 81 Query: 74 LLKGAS---LKEYYRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSVPASEWK-EKV- 128 L++ + +K + V +FQDP ++ +P+ K VK++ V + + EK+ Sbjct: 82 LVRLSEDELVKIRGKIVSMIFQDPSAALSPVHK-------VKKQVTDHVSGEKRRVEKIA 134 Query: 129 EGALRAVGLNPPD-VLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVD 187 + L+ + + P +L KYPH+LSGG QR +IA +L+ + ++ADE + LD + + Sbjct: 135 QEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQ 194 Query: 188 VLNLIGDLKAR-GLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKVYHETLHPYTK 246 +L ++ L+ +++ ITH+LA+ I D+ +MY G VVE+ ++ LHPYTK Sbjct: 195 ILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVVEVADVFSLFERPLHPYTK 254 Query: 247 MLMAAVPR--LDEKWEDVELRLKEQAGDGSLGCPYYGRCPVAEDRCRVENPPLHRVDEDH 304 L+ ++P+ +DE+ E + A D GC ++ RCP D C P L Sbjct: 255 GLLKSIPKPHVDEEIEPIRGEPPSLA-DPPPGCRFHPRCPYVMDVCMRIKPRLEERAPGR 313 Query: 305 WVAC 308 VAC Sbjct: 314 LVAC 317 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 115 bits (287), Expect = 2e-27 Identities = 89/283 (31%), Positives = 144/283 (50%), Gaps = 21/283 (7%) Query: 23 AVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLKGASLKE 82 AVD V I+DGE L+G SG GKTT ++I L EG+IL DG+D++ Sbjct: 18 AVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILIDGEDVTFKDPKD--- 74 Query: 83 YYRHVQGVFQDPFSSYNPIFKADRI-FSLVKEEFYPSVPASEWKEKVEGALRAVGLNPPD 141 R+V VFQ+ ++ Y + D I F+L + + + +V + + + D Sbjct: 75 --RNVAMVFQN-YALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIEVAKLLRIE--D 129 Query: 142 VLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDA----STRVDVLNLIGDLKA 197 +L++ P QLSGGQ QR +ARAL+ K + DE +S LDA + R ++ L DLK Sbjct: 130 LLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELKKLQKDLK- 188 Query: 198 RGLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKVYHETLHPYTKMLMAAVPRLDE 257 ++ +++THD A + D+ +M KG+VV++G+ E+VY H + + A P Sbjct: 189 --ITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEVYMRPKHTFVATFIGAPP---- 242 Query: 258 KWEDVELRLKEQAGDGSLGCPYYGRCPVAEDRCRVENPPLHRV 300 VE ++ D + CP + R E R +E+ + ++ Sbjct: 243 -MNLVECDVESVGEDLWISCPGFSRRVPEEARSVIESKGVRKI 284 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 114 bits (286), Expect = 2e-27 Identities = 73/223 (32%), Positives = 127/223 (56%), Gaps = 12/223 (5%) Query: 23 AVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLKGASLKE 82 A+ + +I+DGE V L+G SG GKTT +++ L G++ FDG+D++ L Sbjct: 18 ALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFDGRDVT-----GLPP 72 Query: 83 YYRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSVPASEWKEKVEGALRAVGLNPPDV 142 R+V VFQ ++ + + D I +K + +P E +V A + ++ + Sbjct: 73 KDRNVAMVFQS-YALWPHMRVFDNIAFPLKIK---KLPRDEIVRRVRWAAELLEID--HL 126 Query: 143 LNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIGDLKAR-GLS 201 L++YPHQLSGGQ QR +ARA++ + + L+ DE +S LDA R+ + + I L+ R G++ Sbjct: 127 LDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKLQRRLGVT 186 Query: 202 VLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKVYHETLHPY 244 ++++THD IGD+ V+M G++ ++G+ VYH + + Sbjct: 187 MIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDVYHRPANTF 229 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 110 bits (276), Expect = 4e-26 Identities = 75/241 (31%), Positives = 132/241 (54%), Gaps = 12/241 (4%) Query: 23 AVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLKGASLKE 82 A+D VS +I DGE+ +L+G SG GKTT ++I EG++ +D+++LK Sbjct: 18 ALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIGSRDVTMLK-----P 72 Query: 83 YYRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSVPASEWKEKVEGALRAVGLNPPDV 142 Y R+ VFQ+ ++ + + D I +K +P SE +V A + ++ + Sbjct: 73 YERNTAMVFQN-YALWPHMRVFDNIAYGLKLR---KLPRSEIVRRVRWAAELLEID--HL 126 Query: 143 LNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIGDLKAR-GLS 201 L++YPHQLSGGQ QR +ARA++ + + L+ DE +S LDA R+ + I L+ R G++ Sbjct: 127 LDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQKRLGVT 186 Query: 202 VLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKVYHETLHPYTKMLMAAVPRLDEKWED 261 ++++THD I + +M +G+V ++G+ +VY + + + LD + + Sbjct: 187 IVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVYEKPATYFVATFIGRSTVLDGRVSE 246 Query: 262 V 262 V Sbjct: 247 V 247 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 103 bits (258), Expect = 4e-24 Identities = 77/233 (33%), Positives = 127/233 (54%), Gaps = 14/233 (6%) Query: 23 AVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLKGASLKE 82 AV DV+ IED E VS++G SGSGKTT+ +I + S G+I F+ D++ L Sbjct: 18 AVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFNDVDVT-----DLPP 72 Query: 83 YYRHVQGVFQDPFSSYNPIFKADRI-FSLVKEEFYPSVPASEWKEKVEGALRAVGLNPPD 141 R++ VFQ+ ++ Y + + I F L F PA KEKV + +G+ Sbjct: 73 NKRNIGLVFQN-YALYPHMTVYENIAFPLRLRNF--GEPAI--KEKVLSVAKLLGIE--G 125 Query: 142 VLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIGDL-KARGL 200 +L++YP QLSGGQ QR +ARAL+ + + L+ DE +S LDA R+ + + + L K G+ Sbjct: 126 LLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQKELGI 185 Query: 201 SVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKVYHETLHPYTKMLMAAVP 253 + +++THD + + D+ I+ G + ++G VY++ + + + P Sbjct: 186 TAIYVTHDQSEALAMADRIAIIASGVIQQVGKPWDVYYKPRNVFVASFIGTPP 238 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 95.5 bits (236), Expect = 2e-21 Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 18/225 (8%) Query: 17 GRKTLRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLK 76 G K L+ VD + GE + ++G SGSGK+T+ K I RL+ G I+F G D++ L Sbjct: 16 GEKVLKGVD---VSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVFRGVDVTRLS 72 Query: 77 GASLKEYYRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSVPA-----SEWKEKVEGA 131 G+ L+ R + G +S + + ++++ YP A + +E+ Sbjct: 73 GSQLRMVRRKI-GYLPQSYSLFPHM-------TVLRNITYPLEKALGLSRRDAEERAVKY 124 Query: 132 LRAVGLNPPDVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNL 191 L +G+ D+ +++P +LSGGQ QR +ARAL ++ L+ DE S LD +R DVL Sbjct: 125 LSMLGIE--DLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEA 182 Query: 192 IGDLKARGLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKV 236 + + G +++ +TH+ + D+ M G V E G ++ Sbjct: 183 LFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSEL 227 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 95.1 bits (235), Expect = 2e-21 Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 23/236 (9%) Query: 27 VSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGIS-----EGKILFDGKDISLLKGASLK 81 +SF + G V +++G SGSGK+T+ ++I RLI + EG++ + ++ +++ Sbjct: 24 ISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVMKEDPYNIR 83 Query: 82 EYYRHVQGVFQDP-----FSSYNPIFKADRIFSLVKEEFYPSVPASEWKEKVEGALRAVG 136 Y VFQ+P + Y + ++ L K + E E VE AL+ Sbjct: 84 RY---TGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNK-------KELDEIVEWALKMAH 133 Query: 137 L--NPPDVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDV-LNLIG 193 L D L+ YPHQLSGGQ QR +ARAL L + L+ DE + +D + V + +++ Sbjct: 134 LWDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVE 193 Query: 194 DLKARGLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKVYHETLHPYTKMLM 249 K +V+ +TH I D+ + +Y+G+V+E G T+++ H TK + Sbjct: 194 YAKEEMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELVLRPRHELTKKFL 249 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 94.7 bits (234), Expect = 3e-21 Identities = 71/226 (31%), Positives = 112/226 (49%), Gaps = 11/226 (4%) Query: 21 LRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLKGASL 80 + A+ VSF + + +++G SG GKTT+ K+I L+ G++ F G D + L Sbjct: 18 VEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFGGVDYT-----GL 72 Query: 81 KEYYRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSVPASEWKEKVEGALRAVGLNPP 140 R V VFQD + + F L F E + +VE AL VGL PP Sbjct: 73 PPERRSVGFVFQDLALFPHMTVYDNVAFGLRARGF----SGGEVRRQVEWALETVGLTPP 128 Query: 141 -DVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIGDLKAR- 198 + + + LSGGQ QR +ARA+ + L+ DE +S LD R +L + L+ + Sbjct: 129 REFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQRKL 188 Query: 199 GLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKVYHETLHPY 244 G +++++THD + D VIM G++V+ G+ +VY + Y Sbjct: 189 GSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEVYTRPANVY 234 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 82.4 bits (202), Expect = 1e-17 Identities = 68/248 (27%), Positives = 121/248 (48%), Gaps = 12/248 (4%) Query: 23 AVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLKGASLKE 82 A+ +VS + GEV++++G SGSGKTT+ +I + + G+++ DG ++S G L+ Sbjct: 29 ALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGEELRR 88 Query: 83 YYRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSVPASEWKE-KVEGALRAVGLNPPD 141 + G F +N I + ++ P A + + + LR VGL + Sbjct: 89 FRLERVGYV---FQQHNLI----PTLTALENILLPMALAGKANRLRGQELLRRVGLGGKE 141 Query: 142 VLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLN-LIGDLKARGL 200 +YP +LSGG+ QR +A AL D +VADE LD +T ++ L+ + +RG Sbjct: 142 --RRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEAHSRGK 199 Query: 201 SVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKVYHETLHPYTKMLMAAVPRLDEKWE 260 +V+ THD + + D+ ++ G++ + S ++ T + A + + Sbjct: 200 TVVLTTHDPRVA-RMADRVAVIEDGRLRGVYSPSRIAGATGFGEVEAEKAVEAVMRRILD 258 Query: 261 DVELRLKE 268 D E RL+E Sbjct: 259 DAERRLRE 266 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 80.9 bits (198), Expect = 4e-17 Identities = 70/241 (29%), Positives = 116/241 (48%), Gaps = 20/241 (8%) Query: 22 RAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLKGASLK 81 RAVD VSF I GE+ SL+G +G+GKTT KM+ L+ + G+ G I G Sbjct: 20 RAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWIAGYSIVREPGN--- 76 Query: 82 EYYRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSVPASEWKEKVEGALRAVGLNPPD 141 R V G+ ++ + + D ++ ++ Y +P+SE +E+ L + L + Sbjct: 77 --VRRVIGLVPQDLTADDEMSGWDNVY--IQARLY-GLPSSEARERTREVLDYLDLM--E 129 Query: 142 VLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIGDLKARGLS 201 ++ SGG ++ IA +L+ K L DE LD +R + I DLK ++ Sbjct: 130 AAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLKRSAVT 189 Query: 202 VLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEK---------VYHETLHP-YTKMLMAA 251 +L TH + + D+ I+ +G++V G+ E+ VY E P YT+ L+ A Sbjct: 190 ILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEELKARVKGETVYIELKDPEYTEPLVLA 249 Query: 252 V 252 + Sbjct: 250 L 250 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 78.2 bits (191), Expect = 3e-16 Identities = 58/238 (24%), Positives = 110/238 (46%), Gaps = 11/238 (4%) Query: 1 MLELQHVSKIYRIGAFGRKTLRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGI 60 M+E + + K + G R+ + A+ VSF + +GE+ S +G +G+GKTT +++ L+ Sbjct: 5 MIEARGLVKRFVSGRIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDP 64 Query: 61 SEGKILFDGKDISLLKGASLKEY--YRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYPS 118 G+ G D+ + K V+ F + ++ RI+ Sbjct: 65 DGGEARVAGFDVVKERWEVRKRIGVMLSVERGFYWKLTGRENLYYFGRIYG--------- 115 Query: 119 VPASEWKEKVEGALRAVGLNPPDVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIIS 178 +P E K +++ L VGL +K ++S G R +AR LL D + L+ DE Sbjct: 116 IPQGELKSRIKEVLDLVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTL 175 Query: 179 MLDASTRVDVLNLIGDLKARGLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKV 236 LD ++ + +I L + G ++ TH++ I D+ I+ G++ G+ +++ Sbjct: 176 GLDPASARTIRGVIRSLASEGRTIFITTHNMVEAEMISDRVGIIIGGRIAMEGTPDEL 233 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 77.8 bits (190), Expect = 3e-16 Identities = 79/241 (32%), Positives = 115/241 (47%), Gaps = 29/241 (12%) Query: 1 MLELQHVSKIYRIGAFGRKTLRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGI 60 +LE + V K YR G+ L D V ++ GE V L+G +G+GKTT+ K+ L L Sbjct: 4 VLEARGVVKKYR----GQPVL---DRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARR 56 Query: 61 SEGKILFDGKDISLLKGASLKEYYRHVQGVFQDP-FSSYNPIFKADRIFSLVKEEFYPSV 119 G++L +G D A V VF+ P S P+ EF S Sbjct: 57 DGGRVLLNGLDPWREPRAR-----EGVGVVFERPNLPSSMPVV-----------EFLESA 100 Query: 120 PA--SEWKEKVEGALRAVGLNPPDVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEII 177 A +V+ A+RA GL + +P QLS G QR IA ALL + +FLVADE Sbjct: 101 AAIIGSSPSRVDWAIRAAGLEGHE-WKTFP-QLSAGLKQRAAIAHALLGEPRFLVADEPT 158 Query: 178 SMLDASTRVDVLNLIGDL-KARGLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKV 236 S LD R +VL L+ L + GLS+L +H + + + ++ G++ GS E + Sbjct: 159 SNLDPLERREVLRLLARLNREHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDL 218 Query: 237 Y 237 + Sbjct: 219 F 219 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 73.6 bits (179), Expect = 6e-15 Identities = 65/246 (26%), Positives = 111/246 (45%), Gaps = 33/246 (13%) Query: 2 LELQHVSKIYRIGA--FGRKTLRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIG 59 +E + + K YR+G + +T+RA+D V + G + SL+G +G+GKTT+ K++ L+ Sbjct: 5 VEAEALVKEYRMGLLPWRARTIRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLL 64 Query: 60 ISEGKILFDGKD-----------ISLLKGASLKEYYRHVQGVFQDPFSSYNPIFKADRIF 108 G G D I ++ G Y+R S ++ ++ +++ Sbjct: 65 PDSGWARVAGFDVVREANNVRSRIGVVLGGERALYWR---------LSGWDNLWFFSQLY 115 Query: 109 SLVKEEFYPSVPASEWKEKVEGALRAVGLNPPDVLNKYPHQLSGGQLQRFLIARALLLDV 168 +P E K +V+ L VGL + + S G QR IAR L+ D Sbjct: 116 G---------IPPREAKRRVKELLEIVGLE--EWAHVRVENYSKGMKQRLHIARGLINDP 164 Query: 169 KFLVADEIISMLDASTRVDVLNLIGDLKARGLSVLFITHDLALGYYIGDKAVIMYKGKVV 228 + L+ DE LD +V ++I + G +VL TH + + D+ I+ KG++V Sbjct: 165 EVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVLLTTHYMVEAEELSDRVAIISKGRIV 224 Query: 229 EMGSTE 234 G E Sbjct: 225 AEGPPE 230 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 73.2 bits (178), Expect = 8e-15 Identities = 63/226 (27%), Positives = 112/226 (49%), Gaps = 26/226 (11%) Query: 24 VDDVSFDIEDGEVVSLIGESGSGKTTIGKMIL--RLIGISEGKILFDGKDISLLKGASLK 81 ++ V FD++ GEV +++G +GSGK+++G +I+ + + EG IL DG+ I L Sbjct: 18 LNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDILLDGESIK-----ELP 72 Query: 82 EYYRHVQGVF---QDPFSSYNPIFKADRIFSLVKEEFYPSVPASEWKEKVEGAL------ 132 R ++G+F QDP P R+ SL+ + A + + + + Sbjct: 73 PEERALKGIFMAQQDP-----PQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKIVKRMYE 127 Query: 133 --RAVGLNPPDVLNKYPH-QLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVL 189 +GL+ ++LN+ + SGG+ +R + +A++ D K ++ DE S LD V Sbjct: 128 YATKLGLD-REILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGLKIVA 186 Query: 190 NLIGDLKARGLSVLFITHDLALGYYI-GDKAVIMYKGKVVEMGSTE 234 I L+ G V+ ITH L ++ D+ ++Y+G V+ G E Sbjct: 187 EFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGSVLARGGAE 232 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 70.5 bits (171), Expect = 5e-14 Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 23/219 (10%) Query: 27 VSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLKGASLKEYYRH 86 V+ + +V +IG +G+GKTT K IL LI + G++ DG + + + R+ Sbjct: 21 VNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLDGFEAT----GRPEMVGRY 76 Query: 87 VQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSV----PASEWKEKVEGALRAVGLNPPDV 142 V Q+P A ++ + EF + + +E+ L +G+ +V Sbjct: 77 AGYVPQNP--------SAPKLSPMTVREFVETSLRLRGVTRARERAVEVLHTLGIRG-EV 127 Query: 143 LNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIGDLKARGLSV 202 L +LS G LQR IARA+ D K LV DE ++ +D + R+++ +I L AR V Sbjct: 128 LESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAGL-ARERLV 186 Query: 203 LFITHD--LALGYYIGDKAVIMYKGKVVEMGSTEKVYHE 239 L +HD L LG+ +++ ++ G E+VY E Sbjct: 187 LMTSHDPSLLLGH---TDIIVVINRDLIASGPPEEVYRE 222 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 68.2 bits (165), Expect = 3e-13 Identities = 51/217 (23%), Positives = 103/217 (47%), Gaps = 10/217 (4%) Query: 21 LRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLKGASL 80 + A+ VSF + GE V LIG +G+GKTT+ +I + G++++ G DI+ Sbjct: 17 IEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYKGVDITGWPA--- 73 Query: 81 KEYYRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSVPASEWKEKVEGALRAVGL-NP 139 YR + F P+ + +++ + E +E+ A+ VGL Sbjct: 74 ---YRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAMEAIDMVGLAGK 130 Query: 140 PDVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIGDLKARG 199 D+L K L+ + +R +ARAL + L+ DEI + L D++ + ++ RG Sbjct: 131 EDILAK---DLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLEISKRG 187 Query: 200 LSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKV 236 ++++ + H + ++ ++++ G+ + G+ +V Sbjct: 188 ITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREV 224 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 67.0 bits (162), Expect = 6e-13 Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 13/224 (5%) Query: 23 AVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLKGASLKE 82 A+D V+ +IE G+V LIG +GSGKTT+ +I G++LF G+DI+ + + + Sbjct: 21 ALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLFKGRDITGMSPHEISK 80 Query: 83 YYRHVQGVFQDPFSSY----NPIFKADRIFSLVKEEFYPSVPASEW----KEKVEGALRA 134 PF++ N + AD S + + + W K A Sbjct: 81 LGLVRTFQIPKPFTNLTVLENVLTAAD---SPGENVYLAGLARRLWLGFEKRAAARAFEI 137 Query: 135 VG-LNPPDVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIG 193 +G + + ++ +LSGGQ++ IARA++ + ++ DE + ++ ++ I Sbjct: 138 LGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVNPRLAGSIMERIK 197 Query: 194 DL-KARGLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKV 236 L + +G++ L I H + L D+ M GKV+ G ++V Sbjct: 198 YLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEV 241 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 65.5 bits (158), Expect = 2e-12 Identities = 75/283 (26%), Positives = 121/283 (42%), Gaps = 28/283 (9%) Query: 10 IYRIGAFGRKTLRAVDDVSFDIEDGEVVSLIGESGSGKTTI-----GKMILRLIGISEGK 64 ++R G G K R +G+VV L+G +G+GKTT G++ L + G+ Sbjct: 87 VHRYGVNGFKLFRLPIP-----REGQVVGLLGRNGTGKTTALRILAGELKPNLGRVEGGE 141 Query: 65 ILFDGKDISLLKGASLKEYYRHV-----QGVFQDPFSSYNPIFKADRIFSLVKEEFYPSV 119 +D + + +G+ L+ Y+R + + + + P R+ L+K V Sbjct: 142 PEWD-EILKRFRGSELQTYFRKLVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGV 200 Query: 120 PASEWKEKVEGALRAVGLNPPDVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISM 179 A E E+V GL+ V ++ QLSGG+LQ+ LI L D + DE S Sbjct: 201 -ALELAEQV-------GLDK--VFDRDVRQLSGGELQKMLIVAVLSRDANVYIFDEPSSY 250 Query: 180 LDASTRVDVLNLIGDLKARGLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKVYHE 239 LD R+ + LI G V+ + HDLA+ Y+ D I+Y G+ G K Y Sbjct: 251 LDIRERMRMARLIAGAARPGAYVMVVEHDLAVLDYVSDLVHILY-GEPGAYGIVSKPY-S 308 Query: 240 TLHPYTKMLMAAVPRLDEKWEDVELRLKEQAGDGSLGCPYYGR 282 T L +P + + + ++ A + P GR Sbjct: 309 TREGINVFLQGYLPAENIRLRKEPILFRKPAPEAQPAAPGGGR 351 Score = 48.1 bits (113), Expect = 3e-07 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 21/190 (11%) Query: 34 GEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLKGASLKEYYRHVQGVFQD 93 GEV+ + G +G GKTT + + + EG + +D+ + S K Y + + Sbjct: 383 GEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYVEDLRV----SYKPQYISPESL--- 435 Query: 94 PFSSYNPIFKADRIFSLVKEEFYPSVPASEWKEKVEGALRAVGLNPPDVLNKYPHQLSGG 153 P ++ + KA P++ A +E R + +L + LSGG Sbjct: 436 PDATVEQVLKAAN----------PAILAPGSWLNLELVKR---MRLDKLLERRVRTLSGG 482 Query: 154 QLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIGDL-KARGLSVLFITHDLALG 212 +LQ+ +A AL + + DE + LD RV V I + + R + L + HDL + Sbjct: 483 ELQKVAVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALVVEHDLMIL 542 Query: 213 YYIGDKAVIM 222 Y+ D+ +++ Sbjct: 543 DYVSDRIMLV 552 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 65.1 bits (157), Expect = 2e-12 Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 14/222 (6%) Query: 21 LRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLL-KGAS 79 + A+ V+ G V +L+GE+G+GKTT+ K I+ ++ +G+IL DG ++ G S Sbjct: 18 VHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPKGPGDS 77 Query: 80 LKEYYRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSVPASEWKEKVEGALRAVGLN- 138 L+ + Q+P P KA ++ + + + A A+GLN Sbjct: 78 LRS---GIYMASQNP--PVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAEASEALGLNI 132 Query: 139 PPDVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIGDLKAR 198 PD +Y ++ + QR + +AL L + ++ DE + L +L G L A Sbjct: 133 DPD---RYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAAS 189 Query: 199 GLSVLFITHDLALGYYIGDKAVIMYKGKVVEMG----STEKV 236 G +VL +TH + D+ VI+ KG V G STE+V Sbjct: 190 GAAVLLVTHRIGEAMEHADRLVILRKGVKVYEGPPPSSTEEV 231 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 64.3 bits (155), Expect = 4e-12 Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 22/240 (9%) Query: 1 MLELQHVSKIYRIGAFGRKTLRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGI 60 +LE++ + Y G F +A+ VS + GE+V+L+G +G+GKTT I L+ Sbjct: 6 LLEVKSIDVYY--GEF-----QALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKP 58 Query: 61 SEGKILFDGKDISLLKGASLKEYYRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSVP 120 G I++ G+DI+ L + R +G+ P IF ++ E + Sbjct: 59 RNGSIIWQGRDIT-----GLPAFKRVEEGISHVP--EGRGIFPRLTVY----ENLRVAAS 107 Query: 121 ASEWKEKVEGALRAVGLNPPDV---LNKYPHQLSGGQLQRFLIARALLLDVKFLVADEII 177 KE + +L V P + ++ LSGG+ Q IARAL+ L+ DE Sbjct: 108 TRRAKEHFQDSLEQVYTIFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPS 167 Query: 178 SMLDASTRVDVLNLIGDLKAR-GLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKV 236 L DV+ L L+ G+++L + ++ L + D+ +M G++V G+++++ Sbjct: 168 LGLAPKLARDVIYLASRLREELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDEL 227 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 62.8 bits (151), Expect = 1e-11 Identities = 48/220 (21%), Positives = 105/220 (47%), Gaps = 9/220 (4%) Query: 17 GRKTLRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLK 76 G L+ + DVS +I G + ++G +G+GK+T+ K + + +G++LF+ D++ + Sbjct: 14 GYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLFENTDVTHMP 73 Query: 77 GASLKEYYRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSVPASEWKEKVEGALRAVG 136 + + +FQ IF+ ++ ++ Y +P +++++E ++ Sbjct: 74 PHDRAKI--GMTFIFQ-----LENIFRELTVYENLRLAGY-DLPEDVFRDRLEEVF-SMF 124 Query: 137 LNPPDVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIGDLK 196 + L + LSGG+ Q +A ++ K + DE + L +VL+ + L Sbjct: 125 PRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVRILN 184 Query: 197 ARGLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKV 236 G +V+ + ++ IGDK V++ G++ G E++ Sbjct: 185 KEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDGPAEEL 224 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 62.4 bits (150), Expect = 1e-11 Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 26/228 (11%) Query: 16 FGRKTLRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLL 75 FG +T AV VSF + DGE ++G +GSGKTT+ +M+ ++ S G + G D+ Sbjct: 14 FGGRT--AVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVCGYDVW-- 69 Query: 76 KGASLKEYYRHVQGVFQDP-----FSSYNPIFKADRIFSLVKEEFYPSVPASEWKEKVEG 130 G +E + QDP + I + L P V E + +E Sbjct: 70 -GDGWREARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLS-----PGVARREARRVLEM 123 Query: 131 ALRAVGLNPPDVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLN 190 L DVL + +LSGGQ + IA AL + + +V DE S LD R + Sbjct: 124 ------LGFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARE---S 174 Query: 191 LIGDLKA--RGLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKV 236 L L+ +G +VLF +HD D+ +IM++G++ G ++ Sbjct: 175 LWASLRKAFKGRTVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPREL 222 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 62.0 bits (149), Expect = 2e-11 Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 18/226 (7%) Query: 17 GRKTLRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLK 76 GR LR V S ++ GE+ L G +G+GKTT ++++ L+ G+ G D Sbjct: 26 GRPVLRGV---SLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPW--- 79 Query: 77 GASLKEYYRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSVPASEWK---EKVEGALR 133 G + V G + S Y + + I FY + S W+ E VE A+ Sbjct: 80 GGGFERVKGEV-GYLPEDASVYERLTGMENIL------FYARL-YSGWRDVEELVENAVF 131 Query: 134 AVGLNPPDVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIG 193 GL+ D+ + S G +R L+ L+ + +V DE S +D + ++ Sbjct: 132 YSGLSREDLARR-AGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILR 190 Query: 194 DLKARGLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKVYHE 239 L G ++L THDLAL I D+ I++ G V G ++ E Sbjct: 191 GLSREGRAILVTTHDLALAEEIADRVTIIHGGSTVASGPPYRLVEE 236 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 60.5 bits (145), Expect = 5e-11 Identities = 61/230 (26%), Positives = 107/230 (46%), Gaps = 26/230 (11%) Query: 4 LQHVSKIYRIGAFGRKTLRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEG 63 ++ + K+Y G ++A+D+V F + GEV +L+GE+G+GKTT+ +++ I + G Sbjct: 15 MRGIVKVYPDG------VKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMG 68 Query: 64 KILFDGKDISLLKGASLKEYYRHVQGVFQDPFSSYNPIFKADRIFSLVKEE---FYPS-- 118 +I G+ +S +R ++ + F+ + S+ EE Y S Sbjct: 69 EIYVWGRKVS----------WRGPWDAIRNGIAMVYQQFRL--VESMTVEENIAIYLSSL 116 Query: 119 -VPASEWKEKVEGALRAVGLNPPDVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEII 177 + SE + + +GL L K L G QR I +AL K L+ DE Sbjct: 117 GLGRSEARRRTLETAERLGLEID--LAKTVADLPMGARQRVEIIKALSGGAKVLILDEPT 174 Query: 178 SMLDASTRVDVLNLIGDLKARGLSVLFITHDLALGYYIGDKAVIMYKGKV 227 S L + + + LK G+SV++ITH L + D+ ++ +G+V Sbjct: 175 SNLTPLEAEKLFSTLRLLKDMGVSVVYITHKLGEVVRVADRVTVLRRGRV 224 Score = 48.9 bits (115), Expect = 2e-07 Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 27/216 (12%) Query: 24 VDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLKGASLKEY 83 V +VS ++ +GE+V + G +G+G+ + I+ L G I G+ I SL ++ Sbjct: 278 VREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEVQGRRIE----GSL-DF 332 Query: 84 YRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSVPASE------------WKEKVEGA 131 YR G + D +S+ + + AS+ ++ VE Sbjct: 333 YRAGGGYIA---GDRGKVLAMD--YSVAENIAFLYYTASKTLLLRRSRLEDLFRRLVE-R 386 Query: 132 LRAVGLNPPDVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNL 191 R V +P + + LSGG Q+ ++ +L K LVA LD +T V NL Sbjct: 387 FRLVARSPWTPVGR----LSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTSFVRNL 442 Query: 192 IGDLKARGLSVLFITHDLALGYYIGDKAVIMYKGKV 227 + +L +G +L ++ DL + D+ +M G+V Sbjct: 443 LSELARQGAGILLVSTDLDEILELSDRIYVMSGGRV 478 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 57.8 bits (138), Expect = 4e-10 Identities = 53/228 (23%), Positives = 110/228 (48%), Gaps = 30/228 (13%) Query: 23 AVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLKGASLKE 82 A+D+VS ++ GE++ +IG +G+GKT++ +I + G++ F G+DI+ LK Sbjct: 16 ALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDIT-----GLKP 70 Query: 83 YYRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYP------------SVPASEWKEKVEG 130 + R G+ + ++ +F + + + +P + A W +VE Sbjct: 71 HQRITLGLSRT--FQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRW--EVEA 126 Query: 131 ALRAVGLNPPDVLNKYPHQ------LSGGQLQRFLIARALLLDVKFLVADEIISMLDAST 184 RA + D+L+ + H+ L G ++ +A AL + + ++ DE ++ L Sbjct: 127 RERAE--HVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEE 184 Query: 185 RVDVLN-LIGDLKARGLSVLFITHDLALGYYIGDKAVIMYKGKVVEMG 231 + D++ +I + +++ I HD+ + + D+ V+M GKV+ G Sbjct: 185 KEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEG 232 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 53.9 bits (128), Expect = 5e-09 Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 25/223 (11%) Query: 24 VDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLI-----GISEGKILFDGKDISLLKGA 78 + ++S +E G + LIG +G+GKTT+ K + +I ++ G I +G+DI+ + Sbjct: 21 IKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNREPD 80 Query: 79 SLKEYYRHVQGVFQDPFSSYNPIFKADRIF-SLVKEEFYPSVPASEWKEKVEGALRAVGL 137 + +GV + + RIF L EE SV + + + +R+V Sbjct: 81 EIAR-----RGVIY--------VMEGRRIFKELTTEENLVSVAYAAGASRDD--IRSVLS 125 Query: 138 NPP---DVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIGD 194 P + L + LSGG+ Q IA ALL K L+ DE L + I Sbjct: 126 YFPRLKERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKM 185 Query: 195 L-KARGLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKV 236 L + GL++L + I D ++ G++V GS E++ Sbjct: 186 LHREEGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEEL 228 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 52.8 bits (125), Expect = 1e-08 Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 21/220 (9%) Query: 26 DVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLKGASLKEYYR 85 DVS + G V ++G +G+GKTT+ + +L L G++ G+ + G+ +R Sbjct: 26 DVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALLGEPVERAGGS----LFR 81 Query: 86 HVQGVFQDPFSSYNPIFKADRIFSLVKEEF---YPSVPASEWKE-KVEGALRAVGLNPPD 141 V + +D + ++ EF Y S+ E E +E A R GL Sbjct: 82 RVAYLPED----------GEPYRNMTGHEFLRLYASIYGVEDLEGYLEEASRLSGLG--G 129 Query: 142 VLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIGDLKAR-GL 200 L + S G +R L+A L L V DE + LD V + L+ + R G+ Sbjct: 130 RLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERHGV 189 Query: 201 SVLFITHDLALGYYIGDKAVIMYKGKVVEMGSTEKVYHET 240 +VL +H++ + + ++ G++V GS + T Sbjct: 190 TVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGEAVRRT 229 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 52.0 bits (123), Expect = 2e-08 Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 17/212 (8%) Query: 27 VSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLKGASLKEYYRH 86 VSF ++ G +V+L+G +GSGKTT+ +++ +I S G++ G S R Sbjct: 25 VSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEVCG---------SPPGRVRR 75 Query: 87 VQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSVP--ASEWKEKVEGALRAVGLNPPDVLN 144 + G + +P KA + L + V +W E+V AL +G+ ++ Sbjct: 76 MLG-YAPASPEVDPRLKAVEVALLYRYGVSEGVAWGRRDW-EEVLAALGEMGVG--ELAW 131 Query: 145 KYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIGDLKARGLSVLF 204 + +LS GQ + ++A L + DE S LD S V ++ L+ R ++++ Sbjct: 132 RRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRSLRGRA-TIVY 190 Query: 205 ITHDLALGYYIGDKAVIMYKGKVVEMGSTEKV 236 THD L D +++ +G + G E V Sbjct: 191 TTHD-PLAAMAADSVIMLREGLLHAQGPPEAV 221 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 50.1 bits (118), Expect = 7e-08 Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 40/217 (18%) Query: 3 ELQHVSKIYRIGAFGRKTLRAV-DDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGIS 61 ELQ V + + GA R R V DV+ + G V +++G SG+GKTT+ +MIL Sbjct: 436 ELQDVLRAF--GAERRVVERYVLKDVNITVNPGSVAAVVGASGAGKTTLLRMIL------ 487 Query: 62 EGKILFDGKDISLLKGASLKEYYRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSVPA 121 GK L G E YR GV + P ++ + +L+ E PS Sbjct: 488 -GKALGIG-----------GEGYRPDSGVVKIPTNT--------KAAALLPGELEPSFGG 527 Query: 122 SEWKEKVEG----------ALRAVGLNPPDVLNKYPHQLSGGQLQRFLIARALLLDVKFL 171 E V L +VGL +LS GQ +R +A L L Sbjct: 528 ETLLEHVASKLGDPGAAVEVLSSVGLGDAIFFRASFGELSTGQKERAKLASLLAERPNLL 587 Query: 172 VADEIISMLDASTRVDVLNLIGDL-KARGLSVLFITH 207 V DE ++ LD T + +G L +++G++++ T+ Sbjct: 588 VIDEFMAHLDPLTARRIARKLGKLARSKGITLIVSTN 624 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 48.9 bits (115), Expect = 2e-07 Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 14/189 (7%) Query: 23 AVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLKGASLKE 82 A +V F G ++ ++G +G+GKTT+ K IL L+ S G+IL +G + + ++ Sbjct: 19 AYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVEGVN---PRSPGFEK 74 Query: 83 YYRHVQGVFQDPFSSYNPIFKADRIF--SLVKEEFYPSVPASEWKEKVEGALRAVGLNPP 140 + V + P P++ I +L + E Y SV A + + AL VGL Sbjct: 75 LLPRIGYVPELPVV---PLWTTPCILLETLARLEGYTSVEA---RVRAREALEVVGL--A 126 Query: 141 DVLNKYPHQLSGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDVLNLIGDLKARGL 200 +LS G +R L+A+A + + + LV DE S LD V L+ + G Sbjct: 127 GECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAREGA 186 Query: 201 SVLFITHDL 209 +V+ +H L Sbjct: 187 TVIVSSHIL 195 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 47.8 bits (112), Expect = 4e-07 Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 36/222 (16%) Query: 20 TLRAVDDVSFDIEDGEVVSLIGESGSGKTTIGKMILRLIGISEGKILFDGKDISLLKGAS 79 ++ A+ VSF + GEV +G +G+GKTT ++++ + G G ++ + Sbjct: 16 SVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARVFGVELYNPGASG 75 Query: 80 LKEYYRHVQGVFQDPFSSYNPIFKADRIFSLVKEEFYPSVPASE----WKEKVEGALRAV 135 ++ +V G F EFY V W V G R V Sbjct: 76 VRRRVGYVPGEF----------------------EFYGGVSGGRMLDYWCRLVGGCSRGV 113 Query: 136 GLNPPDVLNKYPHQL-------SGGQLQRFLIARALLLDVKFLVADEIISMLDASTRVDV 188 ++L +P L S G Q + A + +V DE + LD R V Sbjct: 114 ---VRELLEAFPLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRV 170 Query: 189 LNLIGDLKARGLSVLFITHDLALGYYIGDKAVIMYKGKVVEM 230 L+ + G++V F +H L+ + D+ ++ G +V + Sbjct: 171 LDFVRSKAREGVTVFFSSHVLSEVQRVADRVGLLRSGVLVAL 212 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 41.6 bits (96), Expect = 3e-05 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 2/124 (1%) Query: 113 EEFYPSVPASEWKEKVEGALRAVGLNPPDVLNKYPHQLSGGQLQRFLIARALLLDVKFLV 172 E Y + W+ + E A L D+L++ +LS G+ QR IA AL L + L+ Sbjct: 92 EYCYEASGLPPWEARREAVRLAEELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLL 151 Query: 173 ADEIISMLDASTRVDVLNLIGDLKARGLSVLFITHDLALGYYIGDKAVIMYKGKVVEMGS 232 DE ++ D ++ L+ L G V+ H + ++Y G+ ++G Sbjct: 152 MDEPLAYQDPLGVESLIRLLRRLDVEG--VVVAEHRVHYLLPAASSVYLVYDGRAKQLGP 209 Query: 233 TEKV 236 E V Sbjct: 210 GEAV 213 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 344,525 Number of Sequences: 1700 Number of extensions: 16255 Number of successful extensions: 182 Number of sequences better than 1.0e-04: 39 Number of HSP's better than 0.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 85 Number of HSP's gapped (non-prelim): 48 length of query: 317 length of database: 492,079 effective HSP length: 77 effective length of query: 240 effective length of database: 361,179 effective search space: 86682960 effective search space used: 86682960 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719402|ref|YP_003874934.1| oligopeptide/dipeptide ABC transporter ATP binding protein [Spirochaeta thermophila DSM 6192] (320 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 224 2e-60 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 181 2e-47 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 178 1e-46 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 178 1e-46 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 174 3e-45 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 156 6e-40 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 148 2e-37 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 147 4e-37 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 92 1e-20 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 87 7e-19 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 83 8e-18 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 82 2e-17 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 82 2e-17 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 80 5e-17 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 80 9e-17 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 70 5e-14 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 65 2e-12 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 64 7e-12 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 63 9e-12 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 63 9e-12 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 63 9e-12 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 61 3e-11 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 60 9e-11 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 59 2e-10 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 59 2e-10 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 58 4e-10 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 56 1e-09 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 56 1e-09 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 55 3e-09 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 46 1e-06 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 46 1e-06 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 224 bits (572), Expect = 2e-60 Identities = 128/319 (40%), Positives = 189/319 (59%), Gaps = 7/319 (2%) Query: 3 LQIENLRVYYQTLRGDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLV-LLKPPMRY 61 L +E+L+ Y+ TLRG VKA+DGVSFT+ GE++G+AGESG GKSTL S++ L+ PP R Sbjct: 6 LVVEDLKTYFYTLRGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRI 65 Query: 62 VEGSVTVDGDDL-PIWDFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEA-KGE 119 V G + +DG D+ + + E R++ +S V Q AMN + P +GR I E+L+ +G Sbjct: 66 VGGRIMIDGMDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGV 125 Query: 120 SFEALLPELTRRLELVELPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSAL 179 + LE V L + D YP ELSGG KQR+V+ ++ L P ++IADE T+AL Sbjct: 126 GRHEARQRVYELLESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTAL 185 Query: 180 DVSTQKAIAEMLVEFRNREFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAPTSTLIR 239 DV Q I +L + + + S+I+ITHD+S++ ++A+++M+MY GK AE P+ + Sbjct: 186 DVVVQAQILNLLKKLAWEKNL-SIILITHDLSVIAELAETVMIMYGGKIAEYGPSDAVFT 244 Query: 240 EPRHPYTQMLISSLPEIGVKFGEXXXXXXXXXXXXXXXXXXXCRFRDRCPFAHERCV-EE 298 +P+HPYTQ L+ ++P++ CRF RCP A +RC EE Sbjct: 245 KPQHPYTQALLKAIPKLRGPIDR--LAYIPGSPPDLRNPPPGCRFHPRCPKAFDRCSREE 302 Query: 299 PPVIEVEKGHWVSCWKEVG 317 PP+ V GH +CW G Sbjct: 303 PPLFRVGDGHLSACWLNEG 321 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 181 bits (460), Expect = 2e-47 Identities = 117/323 (36%), Positives = 170/323 (52%), Gaps = 16/323 (4%) Query: 3 LQIENLRVYYQTLRGDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLV-LLKPPMRY 61 +++ENL+VY+ T G VKA++ VSF I GE L GE+GCGKS +L L+ PP R Sbjct: 10 IEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGRI 69 Query: 62 VEGSVTVDGD-----DLPIWDFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEA 116 VEG + + D+ D + + R I+ + Q A++P IG + E + A Sbjct: 70 VEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETMLA 129 Query: 117 KGESFEALLPELTRRLELVEL-----PEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLI 171 G +L + R + +++ PEK + YP ELSGGMKQR V+ IS P +LI Sbjct: 130 HGR-VRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLI 188 Query: 172 ADEITSALDVSTQKAIAEMLVEFRNREFVKSMIVITHDVSILYQIADSIMVMYAGKFAER 231 ADE T+ALDV+ Q I ++L + + RE ++++ITH++ ++ + D + VMYAG E Sbjct: 189 ADEPTTALDVTIQAQIMDLLTQLK-REHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEE 247 Query: 232 APTSTLIREPRHPYTQMLISSLPEIGVKFGEXXXXXXXXXXXXXXXXXXXCRFRDRCPFA 291 AP L P HPYT+ LI ++P K CRF RCP A Sbjct: 248 APVDELFSNPLHPYTRALIRAVPNPLAKI--ENLEHIPGTVPNLITPPPGCRFHPRCPLA 305 Query: 292 HERCVEEPPVI-EVEKGHWVSCW 313 +RC E P++ E GH +CW Sbjct: 306 FDRCSREKPLLKEYSPGHKAACW 328 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 178 bits (452), Expect = 1e-46 Identities = 114/317 (35%), Positives = 165/317 (52%), Gaps = 14/317 (4%) Query: 3 LQIENLRVYYQTLRGDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLV-LLKPPMRY 61 L I++L+V+Y TL G V+A+DGVS ++ GE + + GESG GKSTL S+ L+ PP R Sbjct: 4 LDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRI 63 Query: 62 VEGSVTVDGDDLPIWDFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEIL-----EA 116 V G + G DL E + YR R I V Q ++P R +G IAE L + Sbjct: 64 VGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLAS 123 Query: 117 KGESFEALLPELTRRLELVELPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEIT 176 G E++ + LELV +P +YP +LSGG +QR+ + + L P +LIADE T Sbjct: 124 SGSEAESMAGDA---LELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPT 180 Query: 177 SALDVSTQKAIAEMLVEFRNREFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAPTST 236 +ALDV Q I +++ + + + M+V THD+ + + +D I VMYAG+ E P Sbjct: 181 TALDVVVQAKIMDLMKKLQEERGLTVMLV-THDIGLAAEYSDRIAVMYAGELVEIGPAED 239 Query: 237 LIREPRHPYTQMLISSLPEIGVKFGEXXXXXXXXXXXXXXXXXXXCRFRDRCPFAHERCV 296 ++ P HPYT+MLI S+P+ + + CRF RCP C Sbjct: 240 VVSNPIHPYTEMLIKSVPD---PWEDREVKPIPGSPPDLRNPPPGCRFHPRCPLRQPLCT 296 Query: 297 EEPPVIE-VEKGHWVSC 312 P + V+ G SC Sbjct: 297 NTRPSLRMVDGGRGHSC 313 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 178 bits (452), Expect = 1e-46 Identities = 111/320 (34%), Positives = 172/320 (53%), Gaps = 12/320 (3%) Query: 3 LQIENLRVYYQTLRGDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYV 62 L I +L V Y T +G V ALDGV + GEI+ + GESGCGKSTL S+ + P + Sbjct: 6 LSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAVI 65 Query: 63 E-GSVTVDGDDLPIWDFERMND-----YRYRTISTVPQYAMNAMNPTRKIGRMIAEILEA 116 E GS+ ++ D R+++ R + +S + Q A++P K+ + + + + Sbjct: 66 EKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDHVSG 125 Query: 117 KGESFEALLPELTRRLELVELPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEIT 176 + E + E+ ++L ++ P +L+ YP ELSGGMKQR+V+ S + P ++IADE T Sbjct: 126 EKRRVEKIAQEILKKL-MMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPT 184 Query: 177 SALDVSTQKAIAEMLVEFRNREFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAPTST 236 +ALDV+ Q I +ML R E ++I+ITH++++ +IAD I VMYAG E A + Sbjct: 185 TALDVTVQAQILKMLSRLR-EELETTIILITHNLAVAAEIADRIAVMYAGHVVEVADVFS 243 Query: 237 LIREPRHPYTQMLISSLPEIGVKFGEXXXXXXXXXXXXXXXXXXXCRFRDRCPFAHERCV 296 L P HPYT+ L+ S+P+ V + CRF RCP+ + C+ Sbjct: 244 LFERPLHPYTKGLLKSIPKPHV---DEEIEPIRGEPPSLADPPPGCRFHPRCPYVMDVCM 300 Query: 297 E-EPPVIEVEKGHWVSCWKE 315 +P + E G V+C E Sbjct: 301 RIKPRLEERAPGRLVACHLE 320 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 174 bits (441), Expect = 3e-45 Identities = 104/300 (34%), Positives = 158/300 (52%), Gaps = 6/300 (2%) Query: 16 RGDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYVEGSVTVDGDDLPI 75 R VKA+D V+ I G+ +GL GESG GK+T G ++ L+ P G + DG D+ Sbjct: 46 RAYVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEP---TGGRIFFDGIDVMK 102 Query: 76 WDFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEAKGESFEALLPELTRRLELV 135 + ++R R + Q ++NP + I +IAE ++ G L + L V Sbjct: 103 LRGRGLKEFRRRA-QIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQV 161 Query: 136 ELPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALDVSTQKAIAEMLVEFR 195 L E L YP E SGG +QR+ + L P ++ DE TSALDVS Q I +L + + Sbjct: 162 GLNETHLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQ 221 Query: 196 NREFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAPTSTLIREPRHPYTQMLISSLPE 255 R++ + + I+HD+ ++ ++D I VMY GK E + +P HPYT++L+ S+P Sbjct: 222 -RKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEVFEKPLHPYTKVLLESIPV 280 Query: 256 IGVKFGEXXXXXXXXXXXXXXXXX-XXCRFRDRCPFAHERCVEEPPVIEVEKGHWVSCWK 314 + + CRFR RCP A ++C+EEPP+ EVE+GHWV+CW+ Sbjct: 281 PDPEVAKRRSRIRIKGEPPSPINPPSGCRFRTRCPIAVDKCLEEPPLEEVERGHWVACWR 340 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 156 bits (395), Expect = 6e-40 Identities = 107/334 (32%), Positives = 169/334 (50%), Gaps = 47/334 (14%) Query: 1 MSLQIENLRVYY-------QTLRGDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLV 53 ++L + ++RVY+ + + G VKA+DGVS ++ GEI+G+ GESG GK+TL +++ Sbjct: 2 LALALHDVRVYFPITTFYLKKVIGYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTII 61 Query: 54 LLKPPMRYVEGSVTVD------------------GDDLPIWDFER------------MND 83 L P G V +D G+++ D +R M+ Sbjct: 62 GLHRPF---TGHVFIDIDKGELEEAVSIYEALKRGENVQREDIKRYRKIIKTHDPYYMDR 118 Query: 84 YRY----RTISTVPQYAMNAMNPTRKIGRMIAEILEAKG--ESFEALLPELTRRLELVEL 137 Y R + V Q +++NP K+G +I E + G +S E + + LE V L Sbjct: 119 SNYKKFRRKVQMVQQDPYSSLNPRMKVGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGL 178 Query: 138 PEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALDVSTQKAIAEMLVEFRNR 197 ++ D YP ELSGG +QR+ + + LNP +L+ DE TSALDVS Q I +L E + Sbjct: 179 GKEFADRYPYELSGGQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLRELW-K 237 Query: 198 EFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAPTSTLIREPRHPYTQMLISSLPEIG 257 ++ + ++ITHD+S++ ++ S++VMY+GK E AP L P HPYT++L+S++P Sbjct: 238 KYGLTYLLITHDISVVRYMSSSVVVMYSGKIMESAPKHILFTNPLHPYTKLLLSAVPIPD 297 Query: 258 VKFGEXXXXXXXXXXXXXXXXXXXCRFRDRCPFA 291 + CRF RCP A Sbjct: 298 PRSRRIKEFKDIGEPPNPAKPPVGCRFVTRCPIA 331 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 148 bits (373), Expect = 2e-37 Identities = 98/314 (31%), Positives = 155/314 (49%), Gaps = 19/314 (6%) Query: 10 VYYQTLR-------GDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYV 62 VYY L+ V+A+DGV I +GE++ + GESGCGK+TLG ++V ++ P Sbjct: 19 VYYSLLKRILGRPDAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPS--- 75 Query: 63 EGSVTVDGDDLPIWDFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILE----AKG 118 +G++ G+ L R R R + V Q +++P +G +AE L A+G Sbjct: 76 DGAIYYRGELLTPHRLARDRRLR-RKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARG 134 Query: 119 ESFEALLPELTRRLELVELPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSA 178 E E+ + L E P +LSGG +QR+ + + +L P V++ADE S Sbjct: 135 EEARRRAVEMLETVGLTPGREFYWRK-PHQLSGGQRQRVAIARTLVLEPEVIVADEPVSM 193 Query: 179 LDVSTQKAIAEMLVEFRNREFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAPTSTLI 238 +DVS + +I ++++++ R ++++ITHD+++ +AD I VMY GK E ++I Sbjct: 194 IDVSMRASILDLIMDYHRRTGA-TIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVI 252 Query: 239 REPRHPYTQMLISSLPEIGVKFGEXXXXXXXXXXXXXXXXXXXCRFRDRCPFAHERCVEE 298 PRHPYT L++S P I + CRF RCP A C Sbjct: 253 ENPRHPYTAALVTSTPSISRR--RPPRFPISGEVPSAVAIPPGCRFHPRCPLASSLCRSR 310 Query: 299 PPVIEVEKGHWVSC 312 P + E G +C Sbjct: 311 EPALVEEGGRLYAC 324 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 147 bits (370), Expect = 4e-37 Identities = 116/361 (32%), Positives = 174/361 (48%), Gaps = 53/361 (14%) Query: 3 LQIENLRVYYQTLRGD-----------VKALDGVSFTIGDGEIMGLAGESGCGKSTLGNS 51 L++E+LRV++ R VKA+DGVSF+I GE+ L GESGCGK+T G + Sbjct: 20 LRVEDLRVWFPLRRSITELITMKPQRFVKAVDGVSFSIARGEVFCLVGESGCGKTTTGKA 79 Query: 52 L----------VLLKPPMRYVE----------GSVTVDGDDLPIWDFERMNDYRYRTIST 91 + V KP +E G VD +P F+ + R + Sbjct: 80 ILRLVKATGGRVFFKPKKEVLEELERRGVKSLGDGFVDLLAVPRRKFKPLR----RELQI 135 Query: 92 VPQYAMNAMNPTRKIGRMIAE--ILEAKGESFEALLPELTRRLELVELP--EKVLDMYPI 147 V Q ++NP I R++ + ++ + G + E + R LE V+L +D YP Sbjct: 136 VYQDPYGSLNPRFTIKRILEDPLLIHSIGNARERE-EMVARMLEAVKLTPASDFMDRYPH 194 Query: 148 ELSGGMKQRMVMVISTLLNPSVLIADEITSALDVSTQKAIAEMLVEFRNREFVKSMIVIT 207 +LSGG +QR+ + + +LNPS+++ADE S LDVS + I E+L+ FR + S++ IT Sbjct: 195 QLSGGQRQRVAIARAFILNPSLVVADEPVSMLDVSIRAEILELLLGFREK-LGTSLLFIT 253 Query: 208 HDVSILYQIADSIMVMYAGKFAERAPTSTLIREPRHPYTQMLISSLPEIGVKFGEXXXXX 267 HD+++ I D I VMY GK E +I P HPYT+ L++++PE + Sbjct: 254 HDLAVARYICDRIAVMYLGKIVETGDARRIIERPIHPYTKALVAAIPEPDPSNRKKLREV 313 Query: 268 -XXXXXXXXXXXXXXCRFRDRC-------PFAHERC-VEEPPV---IEVEKGHWVSCWKE 315 CRF RC E C V+EPP+ E E+ VSCW+ Sbjct: 314 PIKGEIPSAAAIPPGCRFHPRCVEYEQDMDRLREMCPVKEPPLKRPTEGEEDRRVSCWRY 373 Query: 316 V 316 + Sbjct: 374 I 374 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 92.4 bits (228), Expect = 1e-20 Identities = 72/253 (28%), Positives = 120/253 (47%), Gaps = 10/253 (3%) Query: 1 MSLQIENLRVYYQTLRGDVKALDGVSFTIGDGEIMGLAGESGCGKSTLG---NSLVLLKP 57 M +++ L V+ D L G+SF G + + G SG GKSTL N L+ L P Sbjct: 4 MDVRVSGLNVWIT----DKHILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIP 59 Query: 58 PMRYVEGSVTVDGDDLPIWDFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEAK 117 R VEG V ++ ++ D + Y + + IG + + + K Sbjct: 60 GAR-VEGEVWINNMNVMKEDPYNIRRYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNK 118 Query: 118 GESFEALLPELTRRLELVELPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITS 177 E E + L E+ +++ D YP +LSGG +QR+ + + L P VL+ DE T+ Sbjct: 119 KELDEIVEWALKMAHLWDEVKDRLSD-YPHQLSGGQRQRLSLARALALKPRVLLLDEPTA 177 Query: 178 ALDVSTQKAIAEMLVEFRNREFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAPTSTL 237 +D + I + +VE+ E + ++I++TH +I+D I+ +Y G+ E PT L Sbjct: 178 NIDPVSTVKIEQSIVEYAKEE-MATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKEL 236 Query: 238 IREPRHPYTQMLI 250 + PRH T+ + Sbjct: 237 VLRPRHELTKKFL 249 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 86.7 bits (213), Expect = 7e-19 Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 15/241 (6%) Query: 17 GDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYVEGSVTVDGDDLPIW 76 G V A+D V +I DGE L G SGCGK+T + L+ P EG + +DG+D+ Sbjct: 14 GKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYP---DEGRILIDGEDV--- 67 Query: 77 DFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEAKGESFEALLPELTRR-LELV 135 D + R ++ V + A+ P + IA L + + ++ RR +E+ Sbjct: 68 ---TFKDPKDRNVAMV--FQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIEVA 122 Query: 136 EL--PEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALDVSTQKAIAEMLVE 193 +L E +LD P +LSGG +QR+ + + + P V + DE S LD + A+ L + Sbjct: 123 KLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELKK 182 Query: 194 FRNREFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAPTSTLIREPRHPYTQMLISSL 253 + ++ + + +THD + +AD I VM G+ + + P+H + I + Sbjct: 183 LQ-KDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEVYMRPKHTFVATFIGAP 241 Query: 254 P 254 P Sbjct: 242 P 242 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 83.2 bits (204), Expect = 8e-18 Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 13/225 (5%) Query: 17 GDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYVEGSVTVDGDDLPIW 76 G+ ALD VS I DGEI L G SGCGK+T + + P EG V + D+ + Sbjct: 14 GNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPD---EGRVYIGSRDVTM- 69 Query: 77 DFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEAKGESFEALLPELTRRLELVE 136 + Y T YA+ P ++ IA L+ + ++ + EL+E Sbjct: 70 ----LKPYERNTAMVFQNYALW---PHMRVFDNIAYGLKLRKLPRSEIVRRVRWAAELLE 122 Query: 137 LPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALDVSTQKAIAEMLVEFRN 196 + + +LD YP +LSGG +QR+ + + + P VL+ DE S LD + + E +V + Sbjct: 123 I-DHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQK 181 Query: 197 REFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAPTSTLIREP 241 R V +++ +THD I+ + VM G+ + + +P Sbjct: 182 RLGV-TIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVYEKP 225 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 82.0 bits (201), Expect = 2e-17 Identities = 62/227 (27%), Positives = 116/227 (51%), Gaps = 11/227 (4%) Query: 1 MSLQIENLRVYYQTLRGDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMR 60 +++ +E + Y++ + AL VS ++ GE++ + G SG GK+TL N + + P Sbjct: 9 LAVVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNA 68 Query: 61 YVEGSVTVDGDDLPIWDFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEAKGES 120 G V VDG ++ E + +R + V + + + PT I + G++ Sbjct: 69 ---GRVIVDGFEVSSAGGEELRRFRLERVGYV--FQQHNLIPTLTALENILLPMALAGKA 123 Query: 121 FEALLPELTRRLELVELPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALD 180 EL RR+ L + YP ELSGG +QR+ + ++ +P +++ADE T LD Sbjct: 124 NRLRGQELLRRVGLGGKERR----YPEELSGGEQQRLAVAVALANDPPIIVADEPTGELD 179 Query: 181 VSTQKAIAEMLVEFRNREFVKSMIVITHDVSILYQIADSIMVMYAGK 227 ++T + I +L+E + K++++ THD + ++AD + V+ G+ Sbjct: 180 IATGERIVRILLEEAHSR-GKTVVLTTHDPRVA-RMADRVAVIEDGR 224 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 81.6 bits (200), Expect = 2e-17 Identities = 74/249 (29%), Positives = 118/249 (47%), Gaps = 20/249 (8%) Query: 17 GDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYVEGSVTVDGDD---L 73 G AL G+ I DGE + L G SGCGK+T + L+ P G V DG D L Sbjct: 14 GKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDA---GRVYFDGRDVTGL 70 Query: 74 PIWDFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEAKGESFEALLPELTRRLE 133 P D R ++ V + A+ P ++ IA L+ K + ++ + E Sbjct: 71 PPKD---------RNVAMV--FQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAAE 119 Query: 134 LVELPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALDVSTQKAIAEMLVE 193 L+E+ + +LD YP +LSGG +QR+ + + + P VL+ DE S LD + + + + Sbjct: 120 LLEI-DHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKK 178 Query: 194 FRNREFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAPTSTLIREPRHPYTQMLISSL 253 + R V +MI +THD I D I+VM G+ + S + P + + I S Sbjct: 179 LQRRLGV-TMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDVYHRPANTFVATFIGS- 236 Query: 254 PEIGVKFGE 262 P++ + G+ Sbjct: 237 PQMNLFSGK 245 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 80.5 bits (197), Expect = 5e-17 Identities = 72/248 (29%), Positives = 119/248 (47%), Gaps = 20/248 (8%) Query: 1 MSLQIENLRVYYQTLRGDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMR 60 + ++++N+ Y G+V+AL GVSF+ + I + G SGCGK+T+ + L P R Sbjct: 4 VEVRLDNVHASY----GEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRR 59 Query: 61 YVEGSVTVDGDDLPIWDFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEAKGES 120 G V G D ER R++ V Q A+ P + +A L A+G S Sbjct: 60 ---GRVFFGGVDYTGLPPER------RSVGFVFQDL--ALFPHMTVYDNVAFGLRARGFS 108 Query: 121 FEALLPELTRRLELVEL--PEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSA 178 + ++ LE V L P + + LSGG +QR+ + + P VL+ DE S Sbjct: 109 GGEVRRQVEWALETVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSH 168 Query: 179 LDVS-TQKAIAEMLVEFRNREFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAPTSTL 237 LD Q+ +AE+ + R+ +MI +THD ++AD++++M G+ + S + Sbjct: 169 LDFKIRQRLLAEL--KRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEV 226 Query: 238 IREPRHPY 245 P + Y Sbjct: 227 YTRPANVY 234 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 79.7 bits (195), Expect = 9e-17 Identities = 72/237 (30%), Positives = 110/237 (46%), Gaps = 14/237 (5%) Query: 3 LQIENLRVYYQTLRGDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYV 62 L++ L V Y K L GV ++ GE + + G SG GKSTL ++ L P Sbjct: 5 LEVRGLVVSYS----GEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPD--- 57 Query: 63 EGSVTVDGDDLPIWDFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILE-AKGESF 121 GS+ G D+ ++ R R I +PQ ++ P + R I LE A G S Sbjct: 58 SGSIVFRGVDVTRLSGSQLRMVR-RKIGYLPQ--SYSLFPHMTVLRNITYPLEKALGLSR 114 Query: 122 EALLPELTRRLELVELPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALDV 181 + L ++ + E + +P LSGG +QR + + + P +L+ DE TSALD Sbjct: 115 RDAEERAVKYLSMLGI-EDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDP 173 Query: 182 STQKAIAEMLVEFRNREFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAPTSTLI 238 ++ + E L FR K+MIV+TH+ ++AD + M G E S L+ Sbjct: 174 ESRADVLEAL--FRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSELV 228 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 70.5 bits (171), Expect = 5e-14 Identities = 66/238 (27%), Positives = 108/238 (45%), Gaps = 13/238 (5%) Query: 17 GDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYVEGSVTVDGDDLPIW 76 G+V A+ V+ I D E + + G SG GK+TL + + P R VD DLP Sbjct: 14 GNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFNDVDVTDLPP- 72 Query: 77 DFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEAKGESFEALLPELTRRLELVE 136 R I V + A+ P + IA L + A+ ++ +L+ Sbjct: 73 --------NKRNIGLV--FQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVAKLLG 122 Query: 137 LPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALDVSTQKAIAEMLVEFRN 196 + E +LD YP +LSGG +QR+ + + + P VL+ DE S LD + I L + + Sbjct: 123 I-EGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQ- 180 Query: 197 REFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAPTSTLIREPRHPYTQMLISSLP 254 +E + I +THD S +AD I ++ +G + + +PR+ + I + P Sbjct: 181 KELGITAIYVTHDQSEALAMADRIAIIASGVIQQVGKPWDVYYKPRNVFVASFIGTPP 238 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 65.1 bits (157), Expect = 2e-12 Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 32/248 (12%) Query: 14 TLR-GDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYVEGSVTVDGDD 72 TLR G V ALD VS + GEI+G+ G +G GK++L N + + P R G V G D Sbjct: 8 TLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQR---GRVYFKGRD 64 Query: 73 LP-IWDFERMNDYRYRTIS--------TVPQYAMNAMNPTRKIGRMIAEILEAKGESFEA 123 + + +R+ RT TV + M ++P + ILE +F A Sbjct: 65 ITGLKPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTR-----GSILEKALWAFRA 119 Query: 124 LLPELTRRLELVELPEKVLDMYPIE---------LSGGMKQRMVMVISTLLNPSVLIADE 174 E+ R E E V+D+ + L G+++++ + + NP V++ DE Sbjct: 120 KRWEVEAR----ERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDE 175 Query: 175 ITSALDVSTQKAIAEMLVEFRNREFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAPT 234 + L ++ I ++E + +M++I HD+ ++ + D ++VM GK P Sbjct: 176 PMAGLSKEEKEDIVRAIIE-TSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPP 234 Query: 235 STLIREPR 242 + + R Sbjct: 235 HEAVADER 242 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 63.5 bits (153), Expect = 7e-12 Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 15/224 (6%) Query: 17 GDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYVEGSVTVDGDDLPIW 76 G A+ GVSF++GDGE + G +G GK+TL L ++ +R GSV V G D +W Sbjct: 15 GGRTAVAGVSFSVGDGERACIMGPNGSGKTTL---LRMVSGVLRPSGGSVRVCGYD--VW 69 Query: 77 DFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEAKGESFEALLPELTRRLELVE 136 + + R I PQ A T I + G S E R LE++ Sbjct: 70 G-DGWREAR-GLIGFAPQDPPMARRMTG--AEYITVVGGLLGLSPGVARREARRVLEMLG 125 Query: 137 LPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALDVSTQKAI-AEMLVEFR 195 E VL LSGG ++ + + ++ NP V++ DE S LDV ++++ A + F+ Sbjct: 126 F-EDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASLRKAFK 184 Query: 196 NREFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAPTSTLIR 239 R +++ +HD +D +++M+ G+ A LI+ Sbjct: 185 GR----TVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPRELIQ 224 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 63.2 bits (152), Expect = 9e-12 Identities = 63/251 (25%), Positives = 116/251 (46%), Gaps = 27/251 (10%) Query: 17 GDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYVEGSVTVDGDDLPIW 76 G +A+DGVSF I GE+ L G +G GK+T ++ +L +R G + G + Sbjct: 17 GGFRAVDGVSFRIARGELFSLLGPNGAGKTT---TIKMLSTLLRPTSGEAWIAG-----Y 68 Query: 77 DFERMNDYRYRTISTVPQ--YAMNAMNPTRKIGRMIAEILEAKGESFEALLPELTRRLEL 134 R R I VPQ A + M+ + + A + E+ L+L Sbjct: 69 SIVREPGNVRRVIGLVPQDLTADDEMSGWDNV-YIQARLYGLPSSEARERTREVLDYLDL 127 Query: 135 VELPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALDVSTQKAIAEMLVEF 194 +E + + Y SGGM++++ + +S + +P VL DE T LDV +++++ + + Sbjct: 128 MEAAHRRVATY----SGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDL 183 Query: 195 RNREFVKSMIVITHDVSILYQIADSIMVMYAGKF-AERAPT--------STLIREPRHP- 244 + ++++ TH + ++D + ++ G+ AE P T+ E + P Sbjct: 184 KRS--AVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEELKARVKGETVYIELKDPE 241 Query: 245 YTQMLISSLPE 255 YT+ L+ +L E Sbjct: 242 YTEPLVLALKE 252 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 63.2 bits (152), Expect = 9e-12 Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 18/221 (8%) Query: 17 GDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYVEGSVTVDGDDLPIW 76 G ++AL GVSF++ GE +GL G +G GK+TL N + + P R G V G D+ W Sbjct: 15 GGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDR---GRVIYKGVDITGW 71 Query: 77 D-FERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIA--EILEAKGESFEALLPELTRRLE 133 + R RT V A + +G ++ +I EA+ + EA ++ Sbjct: 72 PAYRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAMEA--------ID 123 Query: 134 LVELPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALDVSTQKAIAEMLVE 193 +V L K D+ +L+ K+R+ + + P +L+ DEI + L + L+E Sbjct: 124 MVGLAGKE-DILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLE 182 Query: 194 FRNREFVKSMIVITHDVSILYQIADSIMVMYAG-KFAERAP 233 R ++I++ H + + A+ ++V++ G K AE P Sbjct: 183 ISKRGI--TIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTP 221 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 63.2 bits (152), Expect = 9e-12 Identities = 63/216 (29%), Positives = 104/216 (48%), Gaps = 43/216 (19%) Query: 21 ALDGVSFTIGDG-----EIMGLAGESGCGKSTLGNSLV-LLKPPMRYVEGSVTVDGDDLP 74 ALDG + T G+G E++G+AG +G GK+T +L LKP VEG+V +DL Sbjct: 367 ALDGFTLTSGEGALYGGEVIGVAGPNGIGKTTFVRTLAGALKP----VEGAVYPYVEDL- 421 Query: 75 IWDFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEAKGESFEA----LLPELTR 130 +S PQY ++P + ++L+A + A L EL + Sbjct: 422 -------------RVSYKPQY----ISPESLPDATVEQVLKAANPAILAPGSWLNLELVK 464 Query: 131 RLELVELPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALDVSTQKAIA-- 188 R+ L +K+L+ LSGG Q++ + + V + DE ++ LDV + +A Sbjct: 465 RMRL----DKLLERRVRTLSGGELQKVAVAAALAREADVYLLDEPSAYLDVEERVGVARA 520 Query: 189 -EMLVEFRNREFVKSMIVITHDVSILYQIADSIMVM 223 +VE R + +V+ HD+ IL ++D IM++ Sbjct: 521 IRRIVETRE----AAALVVEHDLMILDYVSDRIMLV 552 Score = 58.5 bits (140), Expect = 2e-10 Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 36/210 (17%) Query: 31 DGEIMGLAGESGCGKSTLGNSLV-LLKPPMRYVEGSVTVDGDDLPIWD------------ 77 +G+++GL G +G GK+T L LKP + VEG P WD Sbjct: 105 EGQVVGLLGRNGTGKTTALRILAGELKPNLGRVEGGE-------PEWDEILKRFRGSELQ 157 Query: 78 --FERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEAKGESFEALLPELTRRLELV 135 F ++ D + R + QY + P R GR + ++L+ E AL EL ++ L Sbjct: 158 TYFRKLVDGKLRVAHKI-QYV--ELVPRRLKGR-VRDLLKRADERGVAL--ELAEQVGL- 210 Query: 136 ELPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALDVSTQKAIAEMLV-EF 194 +KV D +LSGG Q+M++V + +V I DE +S LD+ + +A ++ Sbjct: 211 ---DKVFDRDVRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAA 267 Query: 195 RNREFVKSMIVITHDVSILYQIADSIMVMY 224 R +V +V+ HD+++L ++D + ++Y Sbjct: 268 RPGAYV---MVVEHDLAVLDYVSDLVHILY 294 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 61.2 bits (147), Expect = 3e-11 Identities = 60/218 (27%), Positives = 93/218 (42%), Gaps = 17/218 (7%) Query: 22 LDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYVEGSVTVDGDDLPIWDFERM 81 LD V +G GE +GL G +G GK+TL + L R G V ++G L W R Sbjct: 20 LDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLA---RRDGGRVLLNG--LDPWREPRA 74 Query: 82 NDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEAKGESFEALLPELTRRLELVELPEKV 141 + + V + P + E LE+ + + + L Sbjct: 75 RE----GVGVVFE------RPNLPSSMPVVEFLESAAAIIGSSPSRVDWAIRAAGLEGHE 124 Query: 142 LDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALDVSTQKAIAEMLVEFRNREFVK 201 +P +LS G+KQR + + L P L+ADE TS LD ++ + +L NRE Sbjct: 125 WKTFP-QLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARL-NREHGL 182 Query: 202 SMIVITHDVSILYQIADSIMVMYAGKFAERAPTSTLIR 239 S++V +H + L ++A I V+ G+ A L R Sbjct: 183 SLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDLFR 220 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 59.7 bits (143), Expect = 9e-11 Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 28/210 (13%) Query: 29 IGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYVEGSVTVDGDDL---PIWDFERMNDYR 85 + GE++G+AG +G G+ L +V L+ P + G + + G D+ P R+ Sbjct: 277 VRQGEVVGVAGVAGNGQEELFEVIVGLRKPAK---GRILIAGVDVTRAPPLARRRLG--- 330 Query: 86 YRTISTVPQYAM-NAMNPTRKIGRMIAEILEAKGESF-------EALLPELTRRLELVEL 137 + +P+ + +A+ P I IA + + F E L E+ R + + + Sbjct: 331 ---LGVIPEERLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGIKAV 387 Query: 138 -PEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALDVSTQKAIAEMLVEFRN 196 P +++D ELSGG QR+V+ L P +L+A + LD+ Q+A+AEM+ Sbjct: 388 SPRQMVD----ELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRMSSE 443 Query: 197 REFVKSMIVITHDVSILYQIADSIMVMYAG 226 R ++VI D+ L ++++ I V G Sbjct: 444 R---GGVLVIDEDLDFLLRVSNKIYVASGG 470 Score = 52.0 bits (123), Expect = 2e-08 Identities = 65/251 (25%), Positives = 107/251 (42%), Gaps = 45/251 (17%) Query: 3 LQIENLRVYYQTLRGDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYV 62 L +E+L V Y G V AL GV+ + G + L GE+G GK+TL +++ + P + Sbjct: 5 LAVEDLDVVYP---GGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRK-- 59 Query: 63 EGSVTVDGDDL-PIWDFERMNDYRYRTISTVPQY---------AMNAMNPTRKIG----- 107 G + VDG +L P + + Y P Y A+ M RK G Sbjct: 60 -GRILVDGYELRPKGPGDSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQAR 118 Query: 108 RMIAEILEAKGESFEALLPELTRRLELVELPEKVLDMYPIELSGGMKQRMVMVISTLLNP 167 M+AE EA G + + D Y E+ +QR+ ++ + L Sbjct: 119 TMLAEASEALGLNIDP-------------------DRYLGEMGFSERQRLEVIKALALGS 159 Query: 168 SVLIADEITSALDVSTQKAIAEML-VEFRNREFVKSMIVITHDVSILYQIADSIMVMYAG 226 ++ DE T+ L T + A ML R +++++TH + + AD ++++ G Sbjct: 160 RAVLLDEPTTHL---TPEEAARMLEAAGRLAASGAAVLLVTHRIGEAMEHADRLVILRKG 216 Query: 227 -KFAERAPTST 236 K E P S+ Sbjct: 217 VKVYEGPPPSS 227 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 58.9 bits (141), Expect = 2e-10 Identities = 58/239 (24%), Positives = 113/239 (47%), Gaps = 13/239 (5%) Query: 17 GDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYVEGSVTVDGDDLP-I 75 G+ L+ V F + GE+ + G +G GKS+LG +++ + VEG + +DG+ + + Sbjct: 13 GEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGY-VIMGREIYEVVEGDILLDGESIKEL 71 Query: 76 WDFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEAKGESFEALLPELTRRL--- 132 ER + PQ + + + I + + L A+ S A P++ +R+ Sbjct: 72 PPEERALKGIFMAQQDPPQ--IPGVRLSSLIIAFVNKRLGAQDLSKPAD-PKIVKRMYEY 128 Query: 133 -ELVELPEKVLDM-YPIELSGGMKQRMVMVISTLLNPSVLIADEITSALDVSTQKAIAEM 190 + L ++L+ + SGG K+R ++ + + +P ++I DE S LD+ K +AE Sbjct: 129 ATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGLKIVAEF 188 Query: 191 LVEFRNREFVKSMIVITHDVSIL-YQIADSIMVMYAGKFAERAPTSTLIREPRHPYTQM 248 + + R+ + +++ITH +L + D + V+Y G R + Y Q+ Sbjct: 189 IKQLRDSG--RGVMLITHYARLLNFVEPDRVTVLYRGSVLARGGAELARQVEEKGYAQL 245 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 58.9 bits (141), Expect = 2e-10 Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 39/247 (15%) Query: 3 LQIENLRVYYQTLRGDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYV 62 +++E L Y G V+AL GVSF++ GE+ G G +G GK+T ++ +L R Sbjct: 5 IEVEGLVKRY----GSVEALRGVSFSVLSGEVFGYLGPNGAGKTT---TIRVLMGFSRPT 57 Query: 63 EGSVTVDGDDLPIWDFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEAKGESFE 122 GS V G +L Y A R++G + E G S Sbjct: 58 SGSARVFGVEL---------------------YNPGASGVRRRVGYVPGEFEFYGGVSGG 96 Query: 123 ALLPELTRRLELVE--LPEKVLDMYPIEL-------SGGMKQRMVMVISTLLNPSVLIAD 173 +L R + + ++L+ +P+ L S GMKQ + +V++ P +++ D Sbjct: 97 RMLDYWCRLVGGCSRGVVRELLEAFPLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMD 156 Query: 174 EITSALDVSTQKAIAEMLVEFRNREFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAP 233 E T+ LD + + + V + RE V ++ +H +S + ++AD + ++ +G Sbjct: 157 EPTTGLDPLARGRVLD-FVRSKAREGV-TVFFSSHVLSEVQRVADRVGLLRSGVLVALED 214 Query: 234 TSTLIRE 240 S+L+R+ Sbjct: 215 VSSLLRK 221 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 57.8 bits (138), Expect = 4e-10 Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 18/220 (8%) Query: 22 LDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYVEGSVTVDGDDLPIWDFERM 81 L VS T+ G + G+ G +G GK+TL +L+ L R G V + G+ + ER Sbjct: 24 LKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGL---YRADRGRVALLGEPV-----ERA 75 Query: 82 NDYRYRTISTVPQYAMNAMNPT-RKIGRMIAEILEAKGESFEALLPELTRRLELV-ELPE 139 +R ++ +P+ N T + R+ A I E E L E +R L L E Sbjct: 76 GGSLFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGV--EDLEGYLEEASRLSGLGGRLGE 133 Query: 140 KVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALDVSTQKAIAEMLVEFRNREF 199 +V S GM++R+++ L PS+ + DE T+ LD I +L E+ R Sbjct: 134 RVRSY-----SKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERHG 188 Query: 200 VKSMIVITHDVSILYQIADSIMVMYAGKFAERAPTSTLIR 239 V ++++ +H++ + + I ++ +G+ +R Sbjct: 189 V-TVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGEAVR 227 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 56.2 bits (134), Expect = 1e-09 Identities = 57/241 (23%), Positives = 110/241 (45%), Gaps = 16/241 (6%) Query: 3 LQIENLRVYYQTLRGDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYV 62 L+++++ VYY G+ +AL GVS + GEI+ L G +G GK+T +L+ + ++ Sbjct: 7 LEVKSIDVYY----GEFQALFGVSLRVYKGEIVALLGGNGAGKTT---TLLTISGLLKPR 59 Query: 63 EGSVTVDGDDLP-IWDFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEAKGESF 121 GS+ G D+ + F+R+ + IS VP+ T +A E F Sbjct: 60 NGSIIWQGRDITGLPAFKRVEE----GISHVPEGRGIFPRLTVYENLRVAASTRRAKEHF 115 Query: 122 EALLPELTRRLELVELPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALDV 181 + L ++ +++ L LSGG +Q + + + + P +L+ DE + L Sbjct: 116 QDSLEQVYTIFPILKARRSQL---AGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAP 172 Query: 182 STQKAIAEMLVEFRNREFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAPTSTLIREP 241 + + + R E +++++ +V + ++AD VM G+ + L +P Sbjct: 173 KLARDVIYLASRLR-EELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDELALDP 231 Query: 242 R 242 R Sbjct: 232 R 232 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 55.8 bits (133), Expect = 1e-09 Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 29/244 (11%) Query: 19 VKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYVEGSVTVDGDDLPIW-- 76 VKALD V FT+ GE+ L GE+G GK+TL MR + G + ++ +W Sbjct: 26 VKALDNVDFTLRAGEVHALLGENGAGKTTL----------MRILYGEIKPTMGEIYVWGR 75 Query: 77 --DFERMNDYRYRTISTVPQY--AMNAMNPTRKIGRMIAEILEAKGESFEALLPELTRRL 132 + D I+ V Q + +M I ++ + + E+ L E RL Sbjct: 76 KVSWRGPWDAIRNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRTL-ETAERL 134 Query: 133 EL-VELPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSAL-DVSTQKAIAEM 190 L ++L + V D L G +QR+ ++ + VLI DE TS L + +K + + Sbjct: 135 GLEIDLAKTVAD-----LPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTL 189 Query: 191 LVEFRNREFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAPTSTLIREPRHPYTQMLI 250 + ++ S++ ITH + + ++AD + V+ G+ + A + R ++++ Sbjct: 190 RL---LKDMGVSVVYITHKLGEVVRVADRVTVLRRGRVS--AVIEDVGRTSEEELARLMV 244 Query: 251 SSLP 254 +LP Sbjct: 245 GTLP 248 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 54.7 bits (130), Expect = 3e-09 Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 12/219 (5%) Query: 22 LDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMRYVEGSVTVDGDDLPIWDFERM 81 L GVS ++ GEI LAG +G GK+T SL +L + G V G D FER+ Sbjct: 30 LRGVSLSVKFGEIHVLAGLNGAGKTT---SLRVLVGLLSRDSGEARVLGVDPWGGGFERV 86 Query: 82 NDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEAKGESFEALLPELTRRLELVELPEKV 141 + +P+ A T + L + E L+ + L + Sbjct: 87 KG----EVGYLPEDASVYERLTGMENILFYARLYSGWRDVEELVENA---VFYSGLSRED 139 Query: 142 LDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALDVSTQKAIAEMLVEFRNREFVK 201 L S GMK+R+++ I+ + P +++ DE TS +D I ++L + Sbjct: 140 LARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSREG--R 197 Query: 202 SMIVITHDVSILYQIADSIMVMYAGKFAERAPTSTLIRE 240 +++V THD+++ +IAD + +++ G P L+ E Sbjct: 198 AILVTTHDLALAEEIADRVTIIHGGSTVASGPPYRLVEE 236 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 45.8 bits (107), Expect = 1e-06 Identities = 62/238 (26%), Positives = 92/238 (38%), Gaps = 36/238 (15%) Query: 3 LQIENLRVYYQTLRGDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMR-- 60 + + LR + G L GVS G I LAG +G GKST+ L + Sbjct: 1 MSVVRLRDVWYRYPGGGWVLRGVSLEAPRG-ITLLAGPTGGGKSTILRVAAGLATRIYGG 59 Query: 61 YVEGSVTVDGDDLPIWDFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEAKGES 120 Y+ G V G + + DY +S P+ + EA G Sbjct: 60 YLRGEVEARGKPVLV-----PQDYDLFILSLTPREELEYC-------------YEASG-- 99 Query: 121 FEALLPELTRRLELVELPEKV-----LDMYPIELSGGMKQRMVMVISTLLNPSVLIADEI 175 LP R E V L E++ LD +LS G +QR+ + + L VL+ DE Sbjct: 100 ----LPPWEARREAVRLAEELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEP 155 Query: 176 TSALDVSTQKAIAEMLVEFRNREFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAP 233 + D E L+ R V+ ++V H V L A S+ ++Y G+ + P Sbjct: 156 LAYQD----PLGVESLIRLLRRLDVEGVVVAEHRVHYLLPAASSVYLVYDGRAKQLGP 209 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 45.8 bits (107), Expect = 1e-06 Identities = 53/233 (22%), Positives = 97/233 (41%), Gaps = 17/233 (7%) Query: 1 MSLQIENLRVYYQTLRGDVKALDGVSFTIGDGEIMGLAGESGCGKSTLGNSLVLLKPPMR 60 M +++E+L V Y L GV+ ++ + G +G GK+T +++ L P R Sbjct: 1 MRVRVEDLTVAYN----GEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPAR 56 Query: 61 YVEGSVTVDGDDLPIWDFERMNDYRYRTISTVPQYAMNAMNPTRKIGRMIAEILEAKGES 120 G V +DG ++ + R VPQ + + L +G + Sbjct: 57 ---GRVFLDG-----FEATGRPEMVGRYAGYVPQNPSAPKLSPMTVREFVETSLRLRGVT 108 Query: 121 FEALLPELTRRLELVELPEKVLDMYPIELSGGMKQRMVMVISTLLNPSVLIADEITSALD 180 L + + +VL+ ELS GM QR+ + + +P +L+ DE +++D Sbjct: 109 --RARERAVEVLHTLGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVD 166 Query: 181 VSTQKAIAEMLVEFRNREFVKSMIVITHDVSILYQIADSIMVMYAGKFAERAP 233 + + IA ++ V ++ +HD S+L D I+V+ A P Sbjct: 167 PAGRMEIARIIAGLARERLV---LMTSHDPSLLLGHTDIIVVINRDLIASGPP 216 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 295,755 Number of Sequences: 1700 Number of extensions: 11755 Number of successful extensions: 149 Number of sequences better than 1.0e-04: 31 Number of HSP's better than 0.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 43 length of query: 320 length of database: 492,079 effective HSP length: 77 effective length of query: 243 effective length of database: 361,179 effective search space: 87766497 effective search space used: 87766497 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719403|ref|YP_003874935.1| ABC transporter permease [Spirochaeta thermophila DSM 6192] (305 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431518|ref|NP_148037.2| peptide ABC transporter permease [... 125 2e-30 gi|118430986|ref|NP_147132.2| ABC transporter permease [Aeropyru... 110 3e-26 gi|14601951|ref|NP_148496.1| dipeptide ABC transporter permease ... 107 3e-25 gi|14601382|ref|NP_147918.1| ABC transporter permease [Aeropyrum... 106 8e-25 >gi|118431518|ref|NP_148037.2| peptide ABC transporter permease [Aeropyrum pernix K1] Length = 521 Score = 125 bits (313), Expect = 2e-30 Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 1/221 (0%) Query: 83 GTTTFGQDVYSQFVYGLRPVFIVXXXXXXXXXXXXXXXXFVAGYRGGVVDEALNMLTNIV 142 GT G+D++ +YG R IV V+GY GG+ DE + I+ Sbjct: 301 GTDDQGRDLFQGLLYGTRWALIVGLLTSAITVVFGSLYGIVSGYLGGIADEVMLRFAQII 360 Query: 143 IVIPTFALLLIIAAYLKVRSIFSEALFIGFTAWPWAARAIRAQTFSLRAREFVDLARISG 202 +P LL++ AA + L + F+ WP A R+ F +++ +V+ A SG Sbjct: 361 YSLPALPLLILFAAIIGGNIWVIIFLIVAFS-WPGIAFVTRSMAFQIKSEPYVEAAIASG 419 Query: 203 MRSGKIILTEIAPNMMSYLFMTFILQFGGAILNAATLDFIGLGPTNAISLGLMMNNAVLW 262 + +I+L +AP ++ Y+F + L GA++ A+L F+ LG + ++ G ++ A Sbjct: 420 AGTVRIVLLYLAPQVLPYMFASMALSVPGAVIAEASLSFLNLGDPDLVTWGKILFEAQDA 479 Query: 263 SALQLGVWWWFVPPGLAIAAIVGALYITNVGLDEVFNPKLR 303 A G WWW +PPGLAIA + LD + NPKL+ Sbjct: 480 GAALNGYWWWVIPPGLAIAVVGMTFVFIGNALDAILNPKLK 520 >gi|118430986|ref|NP_147132.2| ABC transporter permease [Aeropyrum pernix K1] Length = 301 Score = 110 bits (276), Expect = 3e-26 Identities = 80/295 (27%), Positives = 138/295 (46%), Gaps = 14/295 (4%) Query: 20 VKPQMSSFRELLFFAWRNTRVRIGVAIVGFFLLVALVGPLFAKYD-------PNEYVGPP 72 VK F L+ + N R+G+ I+ F+L+A+ PL A + P Y P Sbjct: 6 VKSLYEKFESLILELYSNPLSRMGLIIITGFILIAVAAPLLAPPNYPDPYKIPKVYSSEP 65 Query: 73 NQPPSAEYWFGTT--TFGQDVYSQFVYGLRPVFIVXXXXXXXXXXXXXXXXFVAGYRGGV 130 PPS+++ FGT+ D+Y ++G R + ++ Y GG+ Sbjct: 66 -LPPSSKHPFGTSGPPGYYDIYYGVIWGTRISLRISLIVVGVAVAIGVVVGSISAYFGGI 124 Query: 131 VDEALNMLTNIVIVIPTFALLLIIAAYLKVRSIFSEALFIGFTAWPWAARAIRAQTFSLR 190 +D L +T + + +P L + IA+ ++ RS+ + L + WP AR +RA+ ++ Sbjct: 125 IDNILMRITEVFLSLPGLILAMAIASMME-RSLQNMILALIAVWWPAYARIVRAEVLRVK 183 Query: 191 AREFVDLARISGMRSGKIILTEIAPNMMSYLFMTFILQFGGAILNAATLDFIGLG-PTNA 249 +V+ A+I G+ + +II I PN + + + + G +L A+ L F+GLG Sbjct: 184 NEPYVEAAKILGLNTYRIIARHILPNSIYTVLVIASMDLGLVVLVASGLGFLGLGAQPGT 243 Query: 250 ISLGLMMNNAVLWSALQLGVWWWFVPPGLAIAAIVGALYITNVGLDEVFNPKLRE 304 G+M++ W L G WW PG+AI V + GL +V +P+ R+ Sbjct: 244 AEWGIMISEGRNW--LLQGAWWPVFFPGIAIFLWVLGWSLLGDGLRDVLDPRTRK 296 >gi|14601951|ref|NP_148496.1| dipeptide ABC transporter permease DppC [Aeropyrum pernix K1] Length = 280 Score = 107 bits (268), Expect = 3e-25 Identities = 77/266 (28%), Positives = 122/266 (45%), Gaps = 7/266 (2%) Query: 40 VRIGVAIVGFFLLVALVGPLFAKYDPNEYVGPPNQ---PPSAEYWFGTTTFGQDVYSQFV 96 + G+AIV F+L+VAL P A Y P+ V + PPS ++ FGT G D++S+ V Sbjct: 16 IAAGLAIVAFYLVVALAAPYIAPYSPHSKVSDVPEHPSPPSLKHPFGTNEIGYDMFSRVV 75 Query: 97 YGLRPVFIVXXXXXXXXXXXXXXXXFVAGYRGGVVDEALNMLTNIVIVIPTFALLLIIAA 156 G R V V V+GY GG VD L+++ + + P L + IA+ Sbjct: 76 LGTRIVLKVVLLSSVMGLAVGVPLGLVSGYFGGPVDRVLSVVMDSLYAFPGIVLAIAIAS 135 Query: 157 YLKVRSIFSEALFIGFTAWPWAARAIRAQTFSLRAREFVDLARISGMRSGKIILTEIAPN 216 L S+ + A+ + P R RA+ ++ ++++ R+ G +I+ + P Sbjct: 136 VLG-PSVLNAAIALMVVYVPAYFRMTRARVIEIKTQDYIVALRVLGAPHSRIMFRHVLPG 194 Query: 217 MMSYLFMTFILQFGGAILNAATLDFIGLGPT-NAISLGLMMNNAVLWSALQLGVWWWFVP 275 +M + + + L AIL A L F GL T A GL ++ + G WW + Sbjct: 195 VMPTVLVVYGLASADAILTEAGLSFFGLVVTYPAPDWGLDISYGI--KQFLSGSWWLTLF 252 Query: 276 PGLAIAAIVGALYITNVGLDEVFNPK 301 PGLAI + + GL E F + Sbjct: 253 PGLAILTLALGFAMIGEGLAERFRAR 278 >gi|14601382|ref|NP_147918.1| ABC transporter permease [Aeropyrum pernix K1] Length = 387 Score = 106 bits (264), Expect = 8e-25 Identities = 85/343 (24%), Positives = 137/343 (39%), Gaps = 64/343 (18%) Query: 21 KPQMSSFRELLFFAWRNTRVRIGVAIVGFFLLVALVGPLFAKYDPNEYV----------- 69 K +M + L+ R+ +GVA+V F+++A++GP A N+ + Sbjct: 39 KARMDELKLTLYALNRSPIGLLGVALVIAFVIIAVIGPYIAPLGYNDQLVYCVTDFDAVR 98 Query: 70 -GPPN----------------QPPSAEYWFGTTTFGQDVYSQFVYGLRPVFIVXXXXXXX 112 PP +P + + W G +G+D+ S+ +YG R FIV Sbjct: 99 LAPPGTVVEVAEDSICTQLGIEPGTYKLWLGADEYGRDLLSRILYGARTSFIVVILVMAV 158 Query: 113 XXXXXXXXXFVAGYRGGVVDEALNMLTNIVIVIPTFALLLIIAAYLKVRS---IFSEALF 169 +GYRGGVVDE + + ++ + P L + ++A L R I + L Sbjct: 159 GPWIGILLGLFSGYRGGVVDEVIMRVVDVFLAFPGLILAIALSAVLPSRLDPIIINNELL 218 Query: 170 IG---------------------------FTAWPWAARAIRAQTFSLRAREFVDLARISG 202 +G WP AR +R S R +V+ AR G Sbjct: 219 LGTLLRLFALKPEDALPMVRLVVVVIALWIVWWPVYARLVRGMVLSARENTYVEAARALG 278 Query: 203 MRSGKIILTEIAPNMMSYLFMTFILQFGGAILNAATLDFIGLGPTNAISLGLMMNNAVLW 262 + + I+L I PN++ + + L FG IL A L F+GLG I+ +++ Sbjct: 279 IPTHSILLGHILPNILGPVLVYLTLDFGAVILVEAGLSFLGLGAVPPIADW----GRIIY 334 Query: 263 SALQL--GVWWWFVPPGLAIAAIVGALYITNVGLDEVFNPKLR 303 Q WW PGLAI V + L ++ +P+ R Sbjct: 335 DGAQYYPNAWWLVFFPGLAILFTVLGFNLLGDALRDIMDPRTR 377 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.142 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 303,747 Number of Sequences: 1700 Number of extensions: 12521 Number of successful extensions: 72 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 4 length of query: 305 length of database: 492,079 effective HSP length: 76 effective length of query: 229 effective length of database: 362,879 effective search space: 83099291 effective search space used: 83099291 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719404|ref|YP_003874936.1| ABC transporter permease [Spirochaeta thermophila DSM 6192] (330 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601950|ref|NP_148495.1| dipeptide ABC transporter permease ... 145 1e-36 gi|118431438|ref|NP_147917.2| ABC transporter permease [Aeropyru... 132 1e-32 gi|14601499|ref|NP_148038.1| peptide ABC transporter permease [A... 96 2e-21 gi|14600616|ref|NP_147133.1| ABC transporter permease [Aeropyrum... 93 1e-20 >gi|14601950|ref|NP_148495.1| dipeptide ABC transporter permease DppB [Aeropyrum pernix K1] Length = 339 Score = 145 bits (366), Expect = 1e-36 Identities = 91/335 (27%), Positives = 161/335 (48%), Gaps = 18/335 (5%) Query: 3 RYFTRKIGVYLLTFFVAVTIDWLIPRFMPGDPIQSMLARAQLRPDAYKIIYSHYTQAFGL 62 RY + + T + T+ +++ R +PGDP+ + L + P+ + I + GL Sbjct: 9 RYAVTRALAIVPTVLILYTVVFIVLRVIPGDPVTAALGTRSIPPEELEAI----RERLGL 64 Query: 63 DLPLWKQYLNFWGAIFRGDLGISIYRFPTPVMEVIMEAVPYDIALLLPAVLLSWWAGNKF 122 D PLW+QY+++ + RGD G S+ + PV IME P + L + ++S G Sbjct: 65 DQPLWRQYIDYLLGVMRGDFGESMTLYGRPVARDIMERFPATLELTIFGFIVSVVLGVGS 124 Query: 123 GAFAARRKRLDNTLLPVGYFLTATPYM-WMAIILAWVLGTTFGIFP-------------I 168 G AA R L + LL + T ++ W+ ++L +V GI P + Sbjct: 125 GVVAAFRGGLVDRLLRTSSIVAYTLFIPWLGLMLKYVFSIKLGILPTGGRIDPRVNLDVV 184 Query: 169 AGAYSFGLVPHLSVRFFLDLLWHWFLPFLSLFLVMFGGWAIGMRNMIIYELEADYSRYLE 228 G Y + + + + H LP L+L +V+ G + +R + L ++ + Sbjct: 185 TGLYVLDSIITANPAALVSAVEHLILPSLTLGIVLSGVYTRLVRIHVAEALRSEVAVAYR 244 Query: 229 ALGTPRKLIRRYAFRNAILPQVTGLALQLGTIVAGALVTEQVFSYPGIGYQILAAIQNKD 288 A G I + R +++P +T + LQ ++ GA++TE FS+PG+G ++ I +D Sbjct: 245 ARGLRESRIAVHMLRISLIPTITMMGLQFAILLGGAVLTEATFSWPGLGSLLVERISYRD 304 Query: 289 YFLLQGCFLFIIIGVLLANFFIDVIYILIDPRTRY 323 Y +QG +F V L + +D+IY +++PR RY Sbjct: 305 YSTIQGVTVFFAFMVGLVSLIVDIIYAIVNPRVRY 339 >gi|118431438|ref|NP_147917.2| ABC transporter permease [Aeropyrum pernix K1] Length = 332 Score = 132 bits (332), Expect = 1e-32 Identities = 94/335 (28%), Positives = 153/335 (45%), Gaps = 18/335 (5%) Query: 1 MKRYFTRKIGVYLLTFFVAVTIDWLIPRFMPGDPIQSMLARAQLRPDAYKIIYSHYTQAF 60 + R+ R++ ++ T + +LI +PG+P + + P+ + I Y Sbjct: 4 LTRFLVRRLLTFIPTLVGVTFVTFLIATVVPGNPAKLWAGGEKASPEVVEQIVREYR--- 60 Query: 61 GLDLPLWKQYLNFWGAIFRGDLGISIYRFPTPVMEVIMEAVPYDIALLLPAVLLSWWAGN 120 LD P W+QY F + + + V ++I+E +P I L L A + G Sbjct: 61 -LDRPFWEQYFFFMYKLLTNTMISPVTS--NYVWDMIVERLPVTIQLTLLAFVFIILLGI 117 Query: 121 KFGAFAA--RRKRLDNTLLPVGYFLTATPYMWMAIILAWVLGTTFGIFPIAGA----YSF 174 G +A R +D + + + P W+A +L +V T + + +AG YS Sbjct: 118 PLGIISALTRDTIIDAAIRIMALVGISVPIFWLAYLLIFVFYTKYRLITLAGTPEPPYSI 177 Query: 175 GLVP------HLSVRFFLDLLWHWFLPFLSLFLVMFGGWAIGMRNMIIYELEADYSRYLE 228 +P L F D+L + +P +L G A +RN + + DY +++ Sbjct: 178 TGIPLIDSIIMLDAATFEDVLRRYTIPAFTLAYPSIGFVARLVRNSFLDAMSGDYVEFMD 237 Query: 229 ALGTPRKLIRRYAFRNAILPQVTGLALQLGTIVAGALVTEQVFSYPGIGYQILAAIQNKD 288 A G P R+ RN+ +P VT L L G ++ GA +TE +F PG+G +L +I N D Sbjct: 238 ARGLPSTWKYRHILRNSSIPIVTVLGLIFGGLLTGAPITETIFGLPGLGKFLLDSINNYD 297 Query: 289 YFLLQGCFLFIIIGVLLANFFIDVIYILIDPRTRY 323 Y L G LF+ I L N +D+ Y +IDPR RY Sbjct: 298 YLSLMGGVLFVGIIYLTVNLLVDITYAIIDPRVRY 332 >gi|14601499|ref|NP_148038.1| peptide ABC transporter permease [Aeropyrum pernix K1] Length = 363 Score = 95.5 bits (236), Expect = 2e-21 Identities = 81/305 (26%), Positives = 139/305 (45%), Gaps = 23/305 (7%) Query: 43 QLRPDAYKIIYSHYTQAFGL------DLPLWKQYLNFWGAIFRGDLGISIYRF---PTPV 93 +L + + +Y + + +GL D+ W L F D G++ Y + + Sbjct: 61 ELLEEKSRQLYENLMERYGLTGNFVQDVATWTVKLIKSNITF--DFGVTQYSYIGGTNVI 118 Query: 94 MEVIMEAVPYDIALLLPAVLLSWWAGNKFGAFAARRKR--LDNTLLPVGYFLTATPYMWM 151 ++++ A+ L L A L+++ G G AR+ D L G + P W+ Sbjct: 119 GDILLLAMKNTAILFLTATLITFAIGIILGFQMARKPGSIFDRGLSVFGMISWSFPTWWV 178 Query: 152 AIILAWVLGTTFGIFPIAGAYSFGLVPHL--SVRFFLDL-----LW--HWFLPFLSLFLV 202 AII+ + +FP Y + + L + F + +W + +P +++ LV Sbjct: 179 AIIMILIFSFYLRLFPAQAQYVYFELSKLPPDLPLFEKIVEQAKIWLKYMTMPVMTIVLV 238 Query: 203 MFGGWAIGMRNMIIYELEADYSRYLEALGTP-RKLIRRYAFRNAILPQVTGLALQLGTIV 261 FGG + +RN+++ L+ D+ A G P R++I + R + P VT LAL + Sbjct: 239 SFGGASYLIRNIVLGILQEDFVTAARARGLPERRVIYGHVLRTSSPPIVTYLALSIVGAF 298 Query: 262 AGALVTEQVFSYPGIGYQILAAIQNKDYFLLQGCFLFIIIGVLLANFFIDVIYILIDPRT 321 GA++TE VF +PG+G AIQ D +L + + +L +D IY L+DPR Sbjct: 299 GGAIITEAVFGWPGMGLVYWIAIQQSDAKVLVASTWVLTVFFILTILILDFIYSLLDPRV 358 Query: 322 RYGLT 326 R G T Sbjct: 359 RTGAT 363 >gi|14600616|ref|NP_147133.1| ABC transporter permease [Aeropyrum pernix K1] Length = 342 Score = 92.8 bits (229), Expect = 1e-20 Identities = 86/336 (25%), Positives = 147/336 (43%), Gaps = 37/336 (11%) Query: 15 TFFVAVTIDWLIPRFMPGDPIQSMLARAQLRPDAYKIIYSHYTQAFGLDLPLWKQYLNFW 74 T F + +++ R + GDP A + PD + + D PL+ QY+ + Sbjct: 16 TLFGLSILVFILTRLV-GDP-----AAIYIHPDMTPEDVQRVRELYHFDDPLYVQYIYWL 69 Query: 75 GAIFRGDLGISIYRFPTPVMEVIMEAVPYDIALLLPAVLLSWWAGNKFGAFAARRK---- 130 + +GDLG S+ PV E I +P + L L A LS G G AA K Sbjct: 70 KGVLQGDLGYSVTA-NMPVTEAIKSFLPATLELALYAFTLSIIVGVYLGTKAAANKDKLI 128 Query: 131 -RLDNTLLPVGYFLTATPYMWMAIILAWV--------------LGTTFGIFPIAGAYSF- 174 L L GY + P W+A++L ++ L F P G + F Sbjct: 129 DHLTRLLALSGYSM---PVFWLALMLLYLFYNVLDFVGPGRLSLEVRFKYMPPYGDFKFY 185 Query: 175 -GLVP-----HLSVRFFLDLLWHWFLPFLSLFLVMFGGWAIGMRNMIIYELEADYSRYLE 228 GL+ + ++ F+D + H P L+ + + +R+ +I E+ +Y + Sbjct: 186 TGLLTIDALLNRNIEVFIDAVKHLIPPVLTQTYIHIAIFIRVLRSSMIEEMNKEYVDFAL 245 Query: 229 ALGTPRKLIRR-YAFRNAILPQVTGLALQLGTIVAGALVTEQVFSYPGIGYQILAAIQNK 287 + G R+++ + Y RN+ + V LQ +++G ++TE VF++PG+G A Sbjct: 246 SKGLRREVVLKDYVRRNSYISLVNVAGLQFVGLMSGVVLTETVFNWPGLGRFAANAAIQL 305 Query: 288 DYFLLQGCFLFIIIGVLLANFFIDVIYILIDPRTRY 323 D + G LF+ ++ N +D++ +DPR RY Sbjct: 306 DPAAVVGFTLFVGTLFIVVNLAVDILLAYLDPRIRY 341 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.332 0.148 0.480 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 355,141 Number of Sequences: 1700 Number of extensions: 16223 Number of successful extensions: 80 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 4 length of query: 330 length of database: 492,079 effective HSP length: 77 effective length of query: 253 effective length of database: 361,179 effective search space: 91378287 effective search space used: 91378287 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719405|ref|YP_003874937.1| oligopeptide ABC transporter periplasmic oligopeptide-binding protein [Spirochaeta thermophila DSM 6192] (573 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430987|ref|NP_147134.2| ABC transporter substrate-binding ... 59 4e-10 gi|14601949|ref|NP_148494.1| dipeptide ABC transporter dipeptide... 57 9e-10 gi|118431437|ref|NP_147915.2| ABC transporter substrate-binding ... 44 1e-05 >gi|118430987|ref|NP_147134.2| ABC transporter substrate-binding protein precursor [Aeropyrum pernix K1] Length = 799 Score = 58.5 bits (140), Expect = 4e-10 Identities = 83/344 (24%), Positives = 142/344 (41%), Gaps = 69/344 (20%) Query: 87 EFIPWLAESGKWVDD-KTYELKVREGITWQDGKPLTAEDVKFTFEL----------AKQQ 135 E PWLAE + D+ TY +R+G+ + +G+ LTA DV+++F+ +Q Sbjct: 315 EIKPWLAERWEIKDNGTTYIFYIRKGVKFHNGEELTAYDVEYSFKRLLVLDLPQGHVRQI 374 Query: 136 SVSLSAIW--DWLAEIVK-VDDYTLRFTFSDP-----------------------RYQSW 169 L W D + + ++ +D YT+ F P + W Sbjct: 375 KPFLIDEWDPDQIDQAIRAIDKYTVVFKLKKPFAPFLRILASDYAFVIINKKWAIEHGDW 434 Query: 170 DNILYTQGIVPKHIFEGKEDVAND-ANENPVGSGAYKYYGH-SEDRMIWVRNDDWWATKL 227 D L PK + ND NP+G+G YK R++ R +D+W Sbjct: 435 DPSL------PKSEWSKFRGKINDYIMRNPMGTGPYKMVEWVPGQRIVLERFEDYWQGPA 488 Query: 228 LGKKVAPKYIVDIRNSSNNVALGMVVKGELDLSNNFLP-GIAALVKQGYVKTYYDGPPYM 286 K+V ++ ++ + L M+ G++D+++ +P + V+ T + G Sbjct: 489 PTKRVVIMFVPEL-----STRLLMLKNGDVDIAD--IPVSYKSQVENVPGITIFTGAATN 541 Query: 287 LSANTAFLWLNLTKKPLND---PAF------RRAIAFAIDTQKIVNVAYAGLVQAADPTG 337 + F + N++K P D P F R+A A+A ++ + AY GL A Sbjct: 542 VVEFIQFNF-NISKIPEGDTIWPDFFTDVNVRKAFAYAFPYEEFIEKAYQGLAIRARAC- 599 Query: 338 LLPTWSKYVDKDVVAKYGFKYDTARAKKILADAGYKDVDGDGFV 381 + P W YV+ Y ++YD +A + A V +GFV Sbjct: 600 VPPGWPGYVE-----AYNYEYDPEKAAEYFKKAWGGRVWEEGFV 638 >gi|14601949|ref|NP_148494.1| dipeptide ABC transporter dipeptide-binding protein DppA [Aeropyrum pernix K1] Length = 515 Score = 57.4 bits (137), Expect = 9e-10 Identities = 112/497 (22%), Positives = 214/497 (43%), Gaps = 64/497 (12%) Query: 54 PPSNWNPYTPWAVATGTIGLCYEPLFLYDPLKDEFIPWLAESGKWVDD---KTYELKVRE 110 P ++++ +T W V + + L YD + +P+LAE +W K + +R+ Sbjct: 49 PATSYDFFT-WEVLSNVMA----GLVTYDQ-QGNIVPYLAE--RWESQEGGKVWIFYLRQ 100 Query: 111 GITWQDGKPLTAEDVKFTFELAKQQSVSLSAIW---DWLAEIVKVDDYTLRFTFSDPRYQ 167 + DG P A+ V + + ++ W +++ + +D +T++FT P Sbjct: 101 DAKFPDGTPCDADVV--VRSIKRVMTIQGDPSWLVTEFVENVEALDQWTVKFTLKQPTGY 158 Query: 168 SWDNILYTQGIVPKHIFEGKEDVANDANENPVGSGAYKYYGHSEDRMIWVR-NDDWWATK 226 + ++ T P H ++ A DA G G Y D+ + ++ N +++ + Sbjct: 159 -FLAVVATPPYYPVHPNYPEDQPAPDATWG--GCGPYMIDEFVRDQYLRLKPNPNFFGEE 215 Query: 227 LLGKKVAPKYIVDIRNSSNNVALGMVVKGELDLSNNFL--PGIAALVKQGYVKTYYDGPP 284 V I+ S ++ + GE+D++ L + L +GY + P Sbjct: 216 PKNDGV----IIRFYEGSEDLRSALEA-GEIDVAWRTLNPSDLEDLRSKGY--NIKEVPG 268 Query: 285 YMLSANTAFLWLNLTKKPLNDPAFRRAIAFAIDTQKIVNVAYAGLVQ---AADPTGLLPT 341 + +L L +++ PL++ A R+A+A AID Q IV+ + G ++ + P+G+ Sbjct: 269 LFIR----YLVLRVSQPPLDNVAVRQALAAAIDRQDIVDRVFRGTMEPLYSMVPSGM--- 321 Query: 342 WSKYVDKDVVAKYGFKYDTARAKKILADAGYKDVDGDGFVEAPDGSKIRLSV-IVPFGWT 400 W Y KYG + A+++L+ AGY + +K+++ + P + Sbjct: 322 WGHY--PAFKEKYGEGPNIDLARQLLSQAGYS-----------ESNKLQVELWYTPEHYG 368 Query: 401 DWMESI-KIVAEGCKAAG-INVEPEYPDFGGYSDQLYGGTFDMAINNFGSGLSNTPWTFY 458 D ++ ++ E +A G I+VE + ++G Y DQL G +++ L P Sbjct: 369 DTEAALAAVIKEQWEATGMISVEIKSSEWGTYVDQLSSGQMMISL------LGWYPDYLD 422 Query: 459 NWVFYHPISDNMPNGNFGR-YNNQQVFDLVEELNRVPTDDTEGMKAVISKIQEIQLKEMV 517 F P + N G Y N QV DL+ + + + D + ++QEI +E Sbjct: 423 PDNFLTPFLLSTANSWTGTGYANPQVDDLLRK--AMTSSDMNERAQLYKQVQEILAEEAP 480 Query: 518 AIPLWFNGLWAQFNTSV 534 IPL L+ +T V Sbjct: 481 FIPLVQGKLFVVTSTEV 497 >gi|118431437|ref|NP_147915.2| ABC transporter substrate-binding protein precursor [Aeropyrum pernix K1] Length = 748 Score = 43.5 bits (101), Expect = 1e-05 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 4/90 (4%) Query: 287 LSANTAFLWLNLTKKPLNDPAFRRAIAFAIDTQKIVNVAYAGLVQAADPTGLLPTWSKYV 346 LS F+ LN K+P N+ R+A+ +AI +I YAG ++ + G+LP Sbjct: 564 LSPVIVFIVLNAMKEPFNNTKVRQALMYAIPFDQIKTSVYAGYIERLN--GVLPAGFLGH 621 Query: 347 DKDVVAKYGFKYDTARAKKILADAGYKDVD 376 + D+V +Y +++ +A++++ ++G D Sbjct: 622 NDDIVTQY--EFNIVKARELIKESGINPSD 649 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 597,250 Number of Sequences: 1700 Number of extensions: 27098 Number of successful extensions: 68 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 66 Number of HSP's gapped (non-prelim): 4 length of query: 573 length of database: 492,079 effective HSP length: 82 effective length of query: 491 effective length of database: 352,679 effective search space: 173165389 effective search space used: 173165389 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719406|ref|YP_003874938.1| transcriptional repressor [Spirochaeta thermophila DSM 6192] (392 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 359,811 Number of Sequences: 1700 Number of extensions: 14566 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 392 length of database: 492,079 effective HSP length: 79 effective length of query: 313 effective length of database: 357,779 effective search space: 111984827 effective search space used: 111984827 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719407|ref|YP_003874939.1| hypothetical protein STHERM_c17310 [Spirochaeta thermophila DSM 6192] (132 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 123,129 Number of Sequences: 1700 Number of extensions: 4333 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 132 length of database: 492,079 effective HSP length: 68 effective length of query: 64 effective length of database: 376,479 effective search space: 24094656 effective search space used: 24094656 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719408|ref|YP_003874940.1| amino acid acetyltransferase [Spirochaeta thermophila DSM 6192] (438 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 424,450 Number of Sequences: 1700 Number of extensions: 18975 Number of successful extensions: 71 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71 Number of HSP's gapped (non-prelim): 0 length of query: 438 length of database: 492,079 effective HSP length: 80 effective length of query: 358 effective length of database: 356,079 effective search space: 127476282 effective search space used: 127476282 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719409|ref|YP_003874941.1| nucleoside-diphosphate kinase [Spirochaeta thermophila DSM 6192] (171 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602027|ref|NP_148572.1| nucleoside diphosphate kinase [Aero... 117 2e-28 >gi|14602027|ref|NP_148572.1| nucleoside diphosphate kinase [Aeropyrum pernix K1] Length = 141 Score = 117 bits (293), Expect = 2e-28 Identities = 67/152 (44%), Positives = 91/152 (59%), Gaps = 15/152 (9%) Query: 6 ITRTLCLVKPDGVRRGLVGRILTRFEDAGLKIVAMKMLVPDEERARRHYRYEDIAVRHGE 65 + RTL +VKPDGV RGL+G +++R E GLKIVAMKM+ E+A Y +V + Sbjct: 3 VQRTLLVVKPDGVERGLIGEVVSRVERKGLKIVAMKMMRLTREKAEEFY-----SVHRDK 57 Query: 66 AVWNRLVQFLCSGPVVAFVLEGVDVVPVVRKLCGSTEPASAPPGTIRGDFAHHTYEYTNS 125 + LV+F+ SGPVVA V+EG + V VVR + GST+ A PGTIRGDF Sbjct: 58 PFFGELVEFITSGPVVAMVVEGDEAVSVVRLMIGSTDGRKAAPGTIRGDF---------- 107 Query: 126 AQGSVRNLIHASATDEEAAYEISVWFREEELV 157 + ++N++HAS + E E V F E E+V Sbjct: 108 SLDIMKNIVHASDSPESFEREFRVLFSESEIV 139 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 182,479 Number of Sequences: 1700 Number of extensions: 7614 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 1 length of query: 171 length of database: 492,079 effective HSP length: 71 effective length of query: 100 effective length of database: 371,379 effective search space: 37137900 effective search space used: 37137900 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719410|ref|YP_003874942.1| glycosidase [Spirochaeta thermophila DSM 6192] (487 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431005|ref|NP_147160.2| hypothetical protein APE_0339.1 [A... 47 8e-07 >gi|118431005|ref|NP_147160.2| hypothetical protein APE_0339.1 [Aeropyrum pernix K1] Length = 363 Score = 47.4 bits (111), Expect = 8e-07 Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 19/129 (14%) Query: 369 LRPKYVWEFIQMGNCGPPIETEAGW------------LVITHGVGPMRH-YALGAVLLDR 415 L PK VW + P E + GW LV+ HGV + Y + A LD Sbjct: 232 LAPKSVWRIMDPA----PFEEKIGWATPVNGYKGGSLLVLLHGVDTEQQVYRVLAAELDL 287 Query: 416 EDPLRVLGRLRDPLL--EAVGEERAGYVPNVLYSCGSLLHEGRLLIPYAMSDYVTSFAIV 473 E VL + + + EER G P ++ CG+ L +G +++ Y +D T A + Sbjct: 288 EGRELVLKAVTPEYIMEPSTLEERFGDRPYTIFPCGAWLVDGEIIVSYGAADTATGLASI 347 Query: 474 QVDELLEEL 482 +D L E L Sbjct: 348 PLDVLEERL 356 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 494,876 Number of Sequences: 1700 Number of extensions: 22008 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 2 length of query: 487 length of database: 492,079 effective HSP length: 80 effective length of query: 407 effective length of database: 356,079 effective search space: 144924153 effective search space used: 144924153 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719411|ref|YP_003874943.1| glycosyltransferase [Spirochaeta thermophila DSM 6192] (406 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431494|ref|NP_148002.2| hypothetical protein APE_1528.1 [A... 73 1e-14 gi|118431714|ref|NP_148357.2| glycosyl transferase, group 1 [Aer... 40 8e-05 >gi|118431494|ref|NP_148002.2| hypothetical protein APE_1528.1 [Aeropyrum pernix K1] Length = 389 Score = 72.8 bits (177), Expect = 1e-14 Identities = 94/394 (23%), Positives = 156/394 (39%), Gaps = 46/394 (11%) Query: 1 MRIGMISTHPPIECGIATYCQYLVEALR--FHQMEIFVMSPFGAQGER---------VFP 49 ++I +S +PP+ CG+ Y + L LR I V S A ER V P Sbjct: 3 LKIAFVSRYPPVHCGVGEYTRMLASGLRTVLPSASIRVYSTGEAGWERYYDDSLGVEVVP 62 Query: 50 VFPPGSDTFAHTVFKLSTSMTPDIMHIQHEYGLYGEQRGMEIVDLTLRYHLVGI--PVVI 107 + ++ V L D++H+QHEYG+YG+ G IV+ L + G+ VV Sbjct: 63 SYMRRDTSYEGLVRNLEDDGGADVVHLQHEYGIYGD--GPRIVEALLEIYKRGLASAVVA 120 Query: 108 TLHTVY--EHLSQEEKIVLHPLVSAASAVIVHEDFQKTSLLKGFPDIPSLESKIAVIEHG 165 T HTV + + E++ S A+I H + L D S I I HG Sbjct: 121 TFHTVVHKQSTASGERLETQRRASRLHAIITHSILMEFELQAQGVD----PSVIVKIPHG 176 Query: 166 IRKVGPVPNAKHILG------LEGKKVVLLA-GYFRPSKRFELIVDXXXXXXXXXXXXXX 218 + +H L +E +++L+ G+ RP K +++ Sbjct: 177 TLVNPYLGYPRHRLAEKLGVEVEDSELLLVTPGFLRPDKGLDVLASAAALVSD------- 229 Query: 219 XXAGKTRNLEYDEYRRQLFEKIHSSPVEDRIVVFRGQFPQYTFDTILSAADVVVLPYE-- 276 GK R + E E+I S + RI V + + +D +VLPY+ Sbjct: 230 ---GKLRIVVAGEPMGVAPEEIPS--MGGRIKVIEKYLSTDEILMLAAMSDAIVLPYKDR 284 Query: 277 --KGAQSGMLAQCFAAHRPVITSGLLAFRKVIERSGGGLIAEHDEDYL-ELIPRVLNDKA 333 K + SG+L + +PV+ + + ++ E S + + L + + ++ Sbjct: 285 PGKYSVSGVLHLSMGSLKPVLGTRVPRLVELYEYSPMLTVPPRSPELLARRMEWLSSNYE 344 Query: 334 LHARLQENIRRYIEKRASWKKVAEAHIEVYRRIL 367 L A + Y W VA HI +YR ++ Sbjct: 345 LAASASAQLYSY-AAATQWPMVASQHIALYRGVI 377 >gi|118431714|ref|NP_148357.2| glycosyl transferase, group 1 [Aeropyrum pernix K1] Length = 385 Score = 40.4 bits (93), Expect = 8e-05 Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 3/113 (2%) Query: 254 GQFPQYTFDTILSAADVVVLPYEKGAQSGMLA-QCFAAHRPVITSGLLAFRKVIERSGGG 312 G P+ ++ S+A V +P G++A + ++ PV+ S + V++ G Sbjct: 265 GVVPESEKPSLYSSAWVTAVPSIVNESFGIVALESLSSGTPVVASRQGGLKDVVKHGKTG 324 Query: 313 LIAE--HDEDYLELIPRVLNDKALHARLQENIRRYIEKRASWKKVAEAHIEVY 363 L+ + ++ + + +L D L R+ E R+ + +R W+KV ++VY Sbjct: 325 LLVKPGSSKELAKALITLLQDSGLRKRMSEEARKIVLERYDWRKVVPQILKVY 377 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 409,428 Number of Sequences: 1700 Number of extensions: 18198 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 3 length of query: 406 length of database: 492,079 effective HSP length: 79 effective length of query: 327 effective length of database: 357,779 effective search space: 116993733 effective search space used: 116993733 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719412|ref|YP_003874944.1| glycosidase [Spirochaeta thermophila DSM 6192] (359 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 434,828 Number of Sequences: 1700 Number of extensions: 21770 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 0 length of query: 359 length of database: 492,079 effective HSP length: 78 effective length of query: 281 effective length of database: 359,479 effective search space: 101013599 effective search space used: 101013599 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719413|ref|YP_003874945.1| peptidase [Spirochaeta thermophila DSM 6192] (504 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 518,622 Number of Sequences: 1700 Number of extensions: 24330 Number of successful extensions: 113 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113 Number of HSP's gapped (non-prelim): 0 length of query: 504 length of database: 492,079 effective HSP length: 81 effective length of query: 423 effective length of database: 354,379 effective search space: 149902317 effective search space used: 149902317 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719414|ref|YP_003874946.1| heat shock protein [Spirochaeta thermophila DSM 6192] (125 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430881|ref|NP_146965.2| small heat shock protein [Aeropyru... 39 4e-05 gi|118431657|ref|NP_148279.2| small heat shock protein [Aeropyru... 39 6e-05 >gi|118430881|ref|NP_146965.2| small heat shock protein [Aeropyrum pernix K1] Length = 155 Score = 38.9 bits (89), Expect = 4e-05 Identities = 23/114 (20%), Positives = 57/114 (50%), Gaps = 2/114 (1%) Query: 1 MKERKELQKQEARKEERVFRPPVYDVREEDGKIVVRMEMPGVDKDGVEISVEDNTLTVVG 60 ++E +EL +Q ++ + P+ V + ++ + +++PG+D++ + I V ++ + + Sbjct: 39 LREFEELLEQRLQEFQGEGIEPIVSVDDLGDRLRILIDLPGMDRESLNIVVLEDRVEISA 98 Query: 61 HRKDTLPEGAY--LVRERRMCDYRRVFTLDETVDPESIEARLENGVLFLTLQVK 112 ++ + + A L + +YR V+ L VDP S+ R ++ + K Sbjct: 99 RIREHVVKRALGSLSEKFSFREYRGVYRLPAPVDPRSVRIRTRGSLIIVEADKK 152 >gi|118431657|ref|NP_148279.2| small heat shock protein [Aeropyrum pernix K1] Length = 176 Score = 38.5 bits (88), Expect = 6e-05 Identities = 26/124 (20%), Positives = 59/124 (47%), Gaps = 16/124 (12%) Query: 1 MKERKELQKQEARKEERVFRPPVYDVREEDGKIVVRMEMPGVDKDGVEISVEDNTLTVVG 60 ++E ++ R + R P+ DV E D ++ + ++PG +KD +++ ++ + Sbjct: 68 VEEFGNIRMARGRPQIREEMEPLVDVIERDDEVWIVADIPGANKDKIKVRATEDKV---- 123 Query: 61 HRKDTLPEGAYLVRERRMCDYRRVFTLDETVDPESIEARLENGVLFLTL-QVKESAKPKK 119 +++ Y + L VDP+S +A NGVL + L ++K + + + Sbjct: 124 -----------VIKAENGKKYYKEVELPAKVDPKSAKASYRNGVLEIKLKKIKPAEEGTE 172 Query: 120 IEVK 123 ++V+ Sbjct: 173 VKVE 176 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.135 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 126,706 Number of Sequences: 1700 Number of extensions: 5602 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 2 length of query: 125 length of database: 492,079 effective HSP length: 67 effective length of query: 58 effective length of database: 378,179 effective search space: 21934382 effective search space used: 21934382 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719415|ref|YP_003874947.1| heat shock protein [Spirochaeta thermophila DSM 6192] (150 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431657|ref|NP_148279.2| small heat shock protein [Aeropyru... 45 6e-07 >gi|118431657|ref|NP_148279.2| small heat shock protein [Aeropyrum pernix K1] Length = 176 Score = 45.4 bits (106), Expect = 6e-07 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 20/106 (18%) Query: 45 PSLDVMETDNEVIVSCDLPGVSEKDLDITLTNNVLTIXXXXXXXXXXXXXXXXXXXSWSG 104 P +DV+E D+EV + D+PG ++ + + T + + I Sbjct: 89 PLVDVIERDDEVWIVADIPGANKDKIKVRATEDKVVIKAENGKK---------------- 132 Query: 105 AFQRTVSLPDSIDPDAVKAELKNGVLTITIAKREEKKPKKIAVQVK 150 + + V LP +DP + KA +NGVL I K ++ KP + +VK Sbjct: 133 -YYKEVELPAKVDPKSAKASYRNGVLEI---KLKKIKPAEEGTEVK 174 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.133 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 116,617 Number of Sequences: 1700 Number of extensions: 3737 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 1 length of query: 150 length of database: 492,079 effective HSP length: 69 effective length of query: 81 effective length of database: 374,779 effective search space: 30357099 effective search space used: 30357099 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719416|ref|YP_003874948.1| short chain dehydrogenase [Spirochaeta thermophila DSM 6192] (261 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum... 98 2e-22 gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] 60 6e-11 gi|118431423|ref|NP_147894.2| oxidoreductase [Aeropyrum pernix K1] 50 4e-08 >gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum pernix K1] Length = 250 Score = 97.8 bits (242), Expect = 2e-22 Identities = 83/245 (33%), Positives = 110/245 (44%), Gaps = 11/245 (4%) Query: 17 ALVTGGAQGIGDAIVKALLEAGYAVASVDKD----GEALQEQQERLATYRGYLPIEADIA 72 ALVTGG++GIG A V G++V K E E+ RL + Y + D+ Sbjct: 6 ALVTGGSRGIGRATVLRFAREGWSVVIAYKSRADLAEKTAEEARRLGSPEAYT-VRVDVG 64 Query: 73 FQEGIEHAVRLTLERFGRLHGLVNNAAVSADAPLHALSRQEWEAVLAVNLTAPCFLAQAC 132 + + E L+ LVN A V + S EWE L VNLT + + Sbjct: 65 DPDSVTEMSSRVGELIPHLNVLVNAAGVLQLGGIEETSISEWEETLRVNLTGVYLVTKLL 124 Query: 133 APHLAATRGA-IVNICSTRALMSEPHT-EAYSASKGGLLALTHALAVSL-GPRVRVNAVS 189 P L + A IVN+ S AYSASK G++ LT LAV L G +RVNAV+ Sbjct: 125 LPLLRKAKWASIVNVASIAGETGNVVAGVAYSASKAGVIGLTKRLAVQLAGYGIRVNAVA 184 Query: 190 PGWIEVRDRKKRALRQEVHHTEEDALQHPAGRVGVPEDIARMVLFLLDPAND-FITGQNF 248 P ++E R+ E A HP + PED+A +LFL DP ITG Sbjct: 185 PSFVET--DMTRSFLDTPEKRERIASLHPLKIILKPEDVAEAILFLADPRRSRGITGHVL 242 Query: 249 VIDGG 253 I+ G Sbjct: 243 SINAG 247 >gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] Length = 260 Score = 60.1 bits (144), Expect = 6e-11 Identities = 67/259 (25%), Positives = 109/259 (42%), Gaps = 19/259 (7%) Query: 10 LGLMERAALVTGGAQGIGDAIVKALLEAGYAVASVDKDGEALQEQQERLATYRGYLPIE- 68 LG+ + A+VT G+ G+G A L G + ++ E L+ R+A+ ++ Sbjct: 3 LGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDI 62 Query: 69 --ADIAFQEGIEHAVRLTLERFGRLHGLVNNAAVSADAPLHALSRQEWEAVLAVNLTAPC 126 DI I+ + G LV + L ++W+ + + Sbjct: 63 VAGDIREPGDIDRLFEKARD-LGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAV 121 Query: 127 FLAQACAPHLAATR-GAIVNICSTRALMSEPHTEAYSASKGGLLALTHALAVSLGPR-VR 184 ++ + A + G +V I S L + + ++ + LA+ L P V Sbjct: 122 WVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHGVT 181 Query: 185 VNAVSPGWIEVRDR-----KKRALRQEVHHTEEDALQH-----PAGRVGVPEDIARMVLF 234 VNAV P I + DR ++RA R + T E+AL+ P GRVG PE++A +V F Sbjct: 182 VNAVLPSLI-LTDRVRSLAEERARRSGI--TVEEALKSMASRIPMGRVGKPEELASVVAF 238 Query: 235 LLDPANDFITGQNFVIDGG 253 L FITG +DGG Sbjct: 239 LASEKASFITGAVIPVDGG 257 >gi|118431423|ref|NP_147894.2| oxidoreductase [Aeropyrum pernix K1] Length = 260 Score = 50.4 bits (119), Expect = 4e-08 Identities = 63/259 (24%), Positives = 113/259 (43%), Gaps = 17/259 (6%) Query: 12 LMERAA-LVTGGAQGIGDAIVKALLEAGYAVASVDKDGEALQEQQERLATYRG--YLPIE 68 ++ER LV GG++G+G +AL G + V + EAL++ + ++ G P+ Sbjct: 1 MLERCGGLVLGGSRGLGFHAARALASLGCNLVIVARGREALEKSAKEISEGFGVDVEPLV 60 Query: 69 ADIAFQEGIEHAVRLTLERFGRLHGLVNNAAVSADAPLHALSRQEWE---AVLAVNLTAP 125 D+ + +E+AV ++ FGR+ +V + PL L EWE A+ L + Sbjct: 61 GDLRKKGHVENAVIHAVQTFGRVDAVVAAYGNISREPL-TLREAEWEDWIEAAALYLAST 119 Query: 126 CFLAQACAPHLAATRGAIVNICSTRALMSEPHTEAYSASKGGLLALTHALAVSLGPRVRV 185 L +A A + A I+ T A +P + A + GL L + A R+R Sbjct: 120 SSLFKALASYNTAKATVILLSSFTVAEPMDPLIVS-DAVRAGLSRLVKSAARLYPDRIRP 178 Query: 186 ------NAVSPGWIEVRDRKKRALRQEVHHT--EEDALQHPAGRVGVPEDIARMVLFLLD 237 + +PG + +R R+ + + + E + P R G ++ ++ L+ Sbjct: 179 ILLILGSFKTPGAMRTLERIARSRGESLENVWRREVEMLSPLARSGGLDEFEEVIRMLV- 237 Query: 238 PANDFITGQNFVIDGGMTR 256 + D++ G V DG R Sbjct: 238 RSPDYMHGATVVFDGASGR 256 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 265,752 Number of Sequences: 1700 Number of extensions: 11310 Number of successful extensions: 66 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 61 Number of HSP's gapped (non-prelim): 3 length of query: 261 length of database: 492,079 effective HSP length: 75 effective length of query: 186 effective length of database: 364,579 effective search space: 67811694 effective search space used: 67811694 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719417|ref|YP_003874949.1| hypothetical protein STHERM_c17410 [Spirochaeta thermophila DSM 6192] (148 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 155,102 Number of Sequences: 1700 Number of extensions: 5982 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 148 length of database: 492,079 effective HSP length: 69 effective length of query: 79 effective length of database: 374,779 effective search space: 29607541 effective search space used: 29607541 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719418|ref|YP_003874950.1| hypothetical protein STHERM_c17420 [Spirochaeta thermophila DSM 6192] (287 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431602|ref|NP_148184.2| hypothetical protein APE_1814.1 [A... 91 3e-20 >gi|118431602|ref|NP_148184.2| hypothetical protein APE_1814.1 [Aeropyrum pernix K1] Length = 301 Score = 90.9 bits (224), Expect = 3e-20 Identities = 71/279 (25%), Positives = 107/279 (38%), Gaps = 9/279 (3%) Query: 12 FQKTETTEHYVYTRLAEFVGGD-NREVLLRIAGEEGRHAEVWSRYTGKTFRPN--RLKAF 68 F + E ++ VY+ L+ G + NR +L +A +E RH E W G + N R++ Sbjct: 12 FCEDEYIDYVVYSYLSSIEGDEENRRILREMAEQEYRHYEFWKELVGSDCKVNVSRIRLA 71 Query: 69 FYLFIARIFSYTFAIKLMXXXXXXXXXXYGSLVTAVPXXXXXXXXXXXXXXXXX-----X 123 F+ RI TF +K + Y + + Sbjct: 72 VLGFMRRIMGVTFTVKFLERHEKEVIESYKRFLEHLEGETRRRLEEIIEDEISHENYLIS 131 Query: 124 MLDEERLGYIGSMVLGLNDALVEXXXXXXXXXXXXQHTRLVGLTGLITGISAALSMAASE 183 ++E + Y+G + LGL DA+VE T + G+ GLI G+SAA+SMAA+ Sbjct: 132 RINESIVRYLGFIALGLADAIVEITGVHAGFLGATATTLVAGVAGLIVGLSAAISMAAAA 191 Query: 184 YLSTRSEKGEKSPGKAAXXXXXXXXXXXXXXXWPYFVLGHYXXXXXXXXXXXXXXXXXXX 243 YL + E +P +A PYF+ Sbjct: 192 YLQAKHESSTTAPLPSAIATGIAYFFAVVTLALPYFITHSNILAFVASVMLAVALISIFV 251 Query: 244 XXXXXXQEESFARLFLEMLGVSLGVAALSFGIG-LLARI 281 E SF R +E LGV G AA ++ G +L RI Sbjct: 252 FYSSVINETSFRREIVENLGVLFGTAAAAYIFGDVLGRI 290 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 201,784 Number of Sequences: 1700 Number of extensions: 6380 Number of successful extensions: 27 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 2 length of query: 287 length of database: 492,079 effective HSP length: 76 effective length of query: 211 effective length of database: 362,879 effective search space: 76567469 effective search space used: 76567469 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719419|ref|YP_003874951.1| adenylate cyclase / guanylate cyclase [Spirochaeta thermophila DSM 6192] (691 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.143 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 633,076 Number of Sequences: 1700 Number of extensions: 26634 Number of successful extensions: 78 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78 Number of HSP's gapped (non-prelim): 0 length of query: 691 length of database: 492,079 effective HSP length: 83 effective length of query: 608 effective length of database: 350,979 effective search space: 213395232 effective search space used: 213395232 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719420|ref|YP_003874952.1| hydrolase [Spirochaeta thermophila DSM 6192] (225 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 214,588 Number of Sequences: 1700 Number of extensions: 9393 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 225 length of database: 492,079 effective HSP length: 74 effective length of query: 151 effective length of database: 366,279 effective search space: 55308129 effective search space used: 55308129 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719421|ref|YP_003874953.1| nucleotidyltransferase domain-containing protein [Spirochaeta thermophila DSM 6192] (125 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431184|ref|NP_147473.2| hypothetical protein APE_0761.1 [A... 38 1e-04 >gi|118431184|ref|NP_147473.2| hypothetical protein APE_0761.1 [Aeropyrum pernix K1] Length = 91 Score = 37.7 bits (86), Expect = 1e-04 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Query: 42 ERILLFGSRARGDSSKGSDWDILVIVRERLSIQEKRRISRELRRVFAGKLIPVDILVKTA 101 + + LFGS ARGD ++GSD D++V+ R+ + R+S L K + + + T Sbjct: 2 DEVKLFGSFARGDYAEGSDLDLVVVSRDWEGVNYVERLS--LLYKLWDKPLDANFIPLTP 59 Query: 102 EELPSYESLPGSIT 115 EEL E L S+T Sbjct: 60 EELA--ERLEASVT 71 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.142 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 147,804 Number of Sequences: 1700 Number of extensions: 6575 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 1 length of query: 125 length of database: 492,079 effective HSP length: 67 effective length of query: 58 effective length of database: 378,179 effective search space: 21934382 effective search space used: 21934382 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719422|ref|YP_003874954.1| HEPN domain-containing protein [Spirochaeta thermophila DSM 6192] (138 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431183|ref|NP_147472.2| hypothetical protein APE_0760.1 [A... 39 7e-05 >gi|118431183|ref|NP_147472.2| hypothetical protein APE_0760.1 [Aeropyrum pernix K1] Length = 135 Score = 38.5 bits (88), Expect = 7e-05 Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 11/131 (8%) Query: 10 WLHKGWEDYLTASHELNLPPENEVITSSVCFHSQQAVEKFLKAYLISRGVEFGRTHSIEF 69 WL D A + L + ++ F SQQA EK LK L++ ++ +THSI Sbjct: 8 WLRAARRDLGRAEYSLKVGDR-----AAATFWSQQAAEKALKGLLLAFKGDYPKTHSIRR 62 Query: 70 LLALCSRE--DEDFESLDPGDLTSYAVDVRYPDEF-YTPTLEEARKALERAGEVKDLVLR 126 LL + + E D +LT Y RYPD P R++ ERA + R Sbjct: 63 LLEDLGLDLGLSEGELEDAFELTQYYYLSRYPDVVEELPDEVIGRRSAERA---VNAARR 119 Query: 127 KLGISEREVEE 137 + +ER +EE Sbjct: 120 IVEAAERALEE 130 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 150,234 Number of Sequences: 1700 Number of extensions: 6099 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 1 length of query: 138 length of database: 492,079 effective HSP length: 68 effective length of query: 70 effective length of database: 376,479 effective search space: 26353530 effective search space used: 26353530 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719423|ref|YP_003874955.1| hypothetical protein STHERM_c17470 [Spirochaeta thermophila DSM 6192] (140 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 145,630 Number of Sequences: 1700 Number of extensions: 6183 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 140 length of database: 492,079 effective HSP length: 68 effective length of query: 72 effective length of database: 376,479 effective search space: 27106488 effective search space used: 27106488 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719424|ref|YP_003874956.1| mannose-6-phosphate isomerase [Spirochaeta thermophila DSM 6192] (467 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 550,140 Number of Sequences: 1700 Number of extensions: 27543 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 0 length of query: 467 length of database: 492,079 effective HSP length: 80 effective length of query: 387 effective length of database: 356,079 effective search space: 137802573 effective search space used: 137802573 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719425|ref|YP_003874957.1| pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta [Spirochaeta thermophila DSM 6192] (554 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 572,973 Number of Sequences: 1700 Number of extensions: 26327 Number of successful extensions: 94 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94 Number of HSP's gapped (non-prelim): 0 length of query: 554 length of database: 492,079 effective HSP length: 81 effective length of query: 473 effective length of database: 354,379 effective search space: 167621267 effective search space used: 167621267 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719426|ref|YP_003874958.1| sugar kinase [Spirochaeta thermophila DSM 6192] (317 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 287,303 Number of Sequences: 1700 Number of extensions: 11797 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 0 length of query: 317 length of database: 492,079 effective HSP length: 77 effective length of query: 240 effective length of database: 361,179 effective search space: 86682960 effective search space used: 86682960 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719427|ref|YP_003874959.1| alcohol dehydrogenase [Spirochaeta thermophila DSM 6192] (390 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431664|ref|NP_148291.2| alcohol dehydrogenase [Aeropyrum p... 114 4e-27 >gi|118431664|ref|NP_148291.2| alcohol dehydrogenase [Aeropyrum pernix K1] Length = 390 Score = 114 bits (285), Expect = 4e-27 Identities = 94/280 (33%), Positives = 132/280 (47%), Gaps = 20/280 (7%) Query: 26 LVAERGWRKVFLCTGMSSFDGLEPVQEALREIERNGVEWERYP-IHGEPSPQVVDEGXXX 84 L+ ++G + V + T + +EA+ + GVE + + EP V D Sbjct: 23 LLGDKGVKHVLVVTD-GKVAAMSWFKEAVEHVASLGVEVCIFDGVTPEPEFDVGDAIASE 81 Query: 85 XXXXXXXXXXXXXXXSVLDTGKAVSAGLFLEGSVKDY-----LEGVGTKSPTG---ERLP 136 SV+D KA G VK LEG+ + G + Sbjct: 82 ARRCRAEAIVAVGGGSVIDAAKA--------GFVKFVRPDADLEGLAPFNYLGLEDSGIV 133 Query: 137 LVAVPTTAGTGSEATSNAVLSE-VGPSGYKRSLRHPGYVPDAAFLDPLLHLSCPPSITAA 195 LVAVPTT+GTGS+A+ VL++ V K ++ VP A+ LDP + L P +T Sbjct: 134 LVAVPTTSGTGSDASYGIVLTKRVNGGREKIAVGSYEVVPYASILDPSITLGMPERLTVG 193 Query: 196 AGMDAISQLVEAFLSTEANPASDALALQGLVLAGRSFLVVVREGGRKVDARLEMAYAAYF 255 +DA++ VEA ST ANP SDALA + + R VV + G DAR EM AA Sbjct: 194 TAVDALAHSVEAIASTNANPLSDALAAKAAEIVFRRLPEVVNDPGN-YDARAEMHIAATM 252 Query: 256 SGVCLTSAGLGLVHGLASPLGARFPVSHGLLCANLLPEVM 295 +G+ T++GLGL H +A PLGAR HG +LP V+ Sbjct: 253 AGMAFTNSGLGLAHAIAHPLGARLGTHHGATVGMVLPHVV 292 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 391,027 Number of Sequences: 1700 Number of extensions: 18314 Number of successful extensions: 70 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 1 length of query: 390 length of database: 492,079 effective HSP length: 79 effective length of query: 311 effective length of database: 357,779 effective search space: 111269269 effective search space used: 111269269 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719428|ref|YP_003874960.1| hypothetical protein STHERM_c17520 [Spirochaeta thermophila DSM 6192] (104 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.140 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,527 Number of Sequences: 1700 Number of extensions: 2306 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 104 length of database: 492,079 effective HSP length: 64 effective length of query: 40 effective length of database: 383,279 effective search space: 15331160 effective search space used: 15331160 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719429|ref|YP_003874961.1| hypothetical protein STHERM_c17530 [Spirochaeta thermophila DSM 6192] (142 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.333 0.145 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,882 Number of Sequences: 1700 Number of extensions: 2664 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 0 length of query: 142 length of database: 492,079 effective HSP length: 69 effective length of query: 73 effective length of database: 374,779 effective search space: 27358867 effective search space used: 27358867 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719430|ref|YP_003874962.1| DNA methyltransferase [Spirochaeta thermophila DSM 6192] (570 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 584,053 Number of Sequences: 1700 Number of extensions: 26484 Number of successful extensions: 84 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84 Number of HSP's gapped (non-prelim): 0 length of query: 570 length of database: 492,079 effective HSP length: 82 effective length of query: 488 effective length of database: 352,679 effective search space: 172107352 effective search space used: 172107352 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719431|ref|YP_003874963.1| 6-pyruvoyl-tetrahydropterin synthase [Spirochaeta thermophila DSM 6192] (142 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 157,442 Number of Sequences: 1700 Number of extensions: 6512 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 142 length of database: 492,079 effective HSP length: 69 effective length of query: 73 effective length of database: 374,779 effective search space: 27358867 effective search space used: 27358867 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719432|ref|YP_003874964.1| UDP-N-acetylmuramyl tripeptide synthetase [Spirochaeta thermophila DSM 6192] (503 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 577,260 Number of Sequences: 1700 Number of extensions: 28102 Number of successful extensions: 86 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86 Number of HSP's gapped (non-prelim): 0 length of query: 503 length of database: 492,079 effective HSP length: 81 effective length of query: 422 effective length of database: 354,379 effective search space: 149547938 effective search space used: 149547938 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719433|ref|YP_003874965.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6192] (364 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 368,623 Number of Sequences: 1700 Number of extensions: 16082 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 0 length of query: 364 length of database: 492,079 effective HSP length: 78 effective length of query: 286 effective length of database: 359,479 effective search space: 102810994 effective search space used: 102810994 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719434|ref|YP_003874966.1| nitroreductase [Spirochaeta thermophila DSM 6192] (169 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.138 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 130,564 Number of Sequences: 1700 Number of extensions: 4166 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 169 length of database: 492,079 effective HSP length: 71 effective length of query: 98 effective length of database: 371,379 effective search space: 36395142 effective search space used: 36395142 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719435|ref|YP_003874967.1| hypothetical protein STHERM_c17590 [Spirochaeta thermophila DSM 6192] (748 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.138 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 448,647 Number of Sequences: 1700 Number of extensions: 13066 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 748 length of database: 492,079 effective HSP length: 84 effective length of query: 664 effective length of database: 349,279 effective search space: 231921256 effective search space used: 231921256 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719436|ref|YP_003874968.1| DNA polymerase IV [Spirochaeta thermophila DSM 6192] (396 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 373,133 Number of Sequences: 1700 Number of extensions: 15202 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 396 length of database: 492,079 effective HSP length: 79 effective length of query: 317 effective length of database: 357,779 effective search space: 113415943 effective search space used: 113415943 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719437|ref|YP_003874969.1| hypothetical protein STHERM_c17610 [Spirochaeta thermophila DSM 6192] (327 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 247,802 Number of Sequences: 1700 Number of extensions: 9555 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 327 length of database: 492,079 effective HSP length: 77 effective length of query: 250 effective length of database: 361,179 effective search space: 90294750 effective search space used: 90294750 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719438|ref|YP_003874970.1| sensor histidine kinase [Spirochaeta thermophila DSM 6192] (582 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 546,404 Number of Sequences: 1700 Number of extensions: 23214 Number of successful extensions: 88 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88 Number of HSP's gapped (non-prelim): 0 length of query: 582 length of database: 492,079 effective HSP length: 82 effective length of query: 500 effective length of database: 352,679 effective search space: 176339500 effective search space used: 176339500 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719439|ref|YP_003874971.1| aminotransferase [Spirochaeta thermophila DSM 6192] (411 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431794|ref|NP_148487.2| aspartate aminotransferase [Aeropy... 87 7e-19 gi|118431147|ref|NP_147407.2| aspartate aminotransferase [Aeropy... 80 7e-17 gi|14602153|ref|NP_148701.1| aspartate aminotransferase [Aeropyr... 42 2e-05 >gi|118431794|ref|NP_148487.2| aspartate aminotransferase [Aeropyrum pernix K1] Length = 405 Score = 87.0 bits (214), Expect = 7e-19 Identities = 69/231 (29%), Positives = 100/231 (43%), Gaps = 8/231 (3%) Query: 36 IIKMGIGDVTLPLPEACIRAFHEAVDEMARAESFKGYGPEQGYAFLREAIAEGDYRSRGV 95 +I GIG P P A +A+DE F GY G LREAIA G Sbjct: 39 VISFGIGQPDFPTPHHIREAAKKALDE-----GFTGYTETAGIPELREAIAWYLNSRYGA 93 Query: 96 EIDPEEIFISDGAKSDTANFQDLFSSDA-KIAIQDPVYPVYLDTNVMAGRTGSHRDGRYE 154 ++ PEE+ + GAK+ L+ ++ I DP Y Y + G + ++E Sbjct: 94 DVSPEEVIATTGAKTAIFLGMALYLRPGDEVIIPDPSYYAYAQVAKLFGARPVYVPMKFE 153 Query: 155 GVIYLPCVPENRFLPEPPDEEVDVVYLCYPNNPTGAVAPRDYLALWVEYARRHDAIILFD 214 + E + E+ ++ + P+NPTG+V P D + + ARR IIL D Sbjct: 154 PGLGFRFDIEG--IERAVSEKTRMIVVNNPHNPTGSVFPPDQVEAIHDIARRRGLIILAD 211 Query: 215 GAYEAFIQDPDLPRSIYEIPGAREVAVEFRSFSKTAGFTGTRCAYTVVPKE 265 Y+ F+ +S +P RE V FSKT TG R Y V+ +E Sbjct: 212 EIYDNFLYTEKPFKSTLSLPDWRENLVYVNGFSKTFSMTGWRLGYVVLRRE 262 >gi|118431147|ref|NP_147407.2| aspartate aminotransferase [Aeropyrum pernix K1] Length = 401 Score = 80.5 bits (197), Expect = 7e-17 Identities = 103/407 (25%), Positives = 163/407 (40%), Gaps = 55/407 (13%) Query: 22 KRVNTYKE--AHPEADIIKMGIGDVTLPLPEACIRAFHEAVDEMARAESFK---GYGPEQ 76 ++++ +E A D+I + G LP +R E + + E FK Y P Sbjct: 18 RKIDAVRERLAREGRDVILLSTGQPGF-LPPTFLR---ERLAQALLDEGFKRLYSYTPTP 73 Query: 77 GYAFLREAIAEGDYRSRGVEIDPEEIFISDGAKSDT-ANFQDLFSSDAKIAIQDPVYPVY 135 GYA +REAIAE G ++P++I ++ G + A + K+ + DP Y Y Sbjct: 74 GYADVREAIAEDLAALGGPRMEPDDILVTAGGQEAMFATLSTILEPGDKVILMDPTYFGY 133 Query: 136 LDTNVMAGRTGSHRDGRYEGVIYLPCV---PENRFLPEPPDEEVDVVYLCYPNNPTGAVA 192 G GR E V P + P+ L E +V V L P+NPTG + Sbjct: 134 RPIVEYLG-------GRVEWVRAPPSLGFQPDEERLKEAFTRDVKAVVLVSPDNPTGRLL 186 Query: 193 PRDYLALWVEYARRHDAIILFDGAYEAFIQDPDLPRSIYEIPGAREVAVEFRSFSKTAGF 252 + L + A A I++D AY+ + + + +Y A + + +FSK GF Sbjct: 187 STESAKLVADLAVDTGAWIVYDEAYKTLVFEGE---HVYLYKLAPDNTISINTFSKDPGF 243 Query: 253 TGTRCAYTVVPKECRVKDSEGRFHSLHDLWFRRQSTKFNGVSYPVQRAAAAVYTPEGQAQ 312 G R Y P K R S + + + AA +Y + + + Sbjct: 244 PGWRLGYLYGPGWIVGK-------------IRLVSEELVYCPPSIAQVAAKIYLEDREGR 290 Query: 313 VRANIAYYMENARIFREALTG--------LGYACTGGEDSPYIWVETGT-------DSWE 357 +R ++ Y E + EA+ G +A GG S +I V+ + S + Sbjct: 291 LR-HLEYAREFLKTRMEAMAGALEEMLPEAVFARPGG--SMFITVDLSSYLSKASITSED 347 Query: 358 FFQLLLERAQVVCTPGAGFGKSGEGFVRFS-AFNFRENVEEAARRLS 403 LL+ V PG FG SG+ +R S A E + E RL+ Sbjct: 348 LSVKLLDEESVATVPGRYFGPSGDTMLRLSFATETPERIREGIGRLA 394 >gi|14602153|ref|NP_148701.1| aspartate aminotransferase [Aeropyrum pernix K1] Length = 397 Score = 42.4 bits (98), Expect = 2e-05 Identities = 52/211 (24%), Positives = 84/211 (39%), Gaps = 27/211 (12%) Query: 71 GYGPEQGYAFLREAIAEGDYRSRGVEIDPEEIFISDG-AKSDTANFQDLFSSDAKIAIQD 129 GYG G LRE++A YR +D E++ I+ G A+++ + L + ++ Sbjct: 70 GYGWTLGEPGLRESVASVYYRGL---VDSEQVIITTGSAEANLLSVISLVAPGDRVLFDM 126 Query: 130 PVYPVYLDTNVMAG-------RTGSHRDGRYEGVIYLPCVPENRFLPEPPDEEVDVVYLC 182 P Y M G R HR + + +Y + E+ V++ Sbjct: 127 PNYMQIHGLLRMRGARILEAWRKREHR-WKLDPGLYAELIKR---------EKPRAVFIT 176 Query: 183 YPNNPTGAVAPRDYLALWVEYARRHDAIILFDGAYEAFIQDPDLPRSIYE---IPGAREV 239 PNNPTG+VA L A R +I++FD Y + ++ E GA + Sbjct: 177 NPNNPTGSVAGPKALGEIAAEAARTGSILVFDELYRGLEHSTEPAPTVLEPALEQGAHAI 236 Query: 240 AVEFRSFSKTAGFTGTRCAYTVVPKECRVKD 270 +V SK G G R + R++D Sbjct: 237 SVS--GLSKVYGLPGLRIGWAAATSR-RLRD 264 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 450,259 Number of Sequences: 1700 Number of extensions: 21050 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 3 length of query: 411 length of database: 492,079 effective HSP length: 79 effective length of query: 332 effective length of database: 357,779 effective search space: 118782628 effective search space used: 118782628 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719440|ref|YP_003874972.1| acyltransferase [Spirochaeta thermophila DSM 6192] (203 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 210,973 Number of Sequences: 1700 Number of extensions: 8936 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 203 length of database: 492,079 effective HSP length: 73 effective length of query: 130 effective length of database: 367,979 effective search space: 47837270 effective search space used: 47837270 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719441|ref|YP_003874973.1| hypothetical protein STHERM_c17650 [Spirochaeta thermophila DSM 6192] (1219 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.139 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,045,803 Number of Sequences: 1700 Number of extensions: 41665 Number of successful extensions: 117 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117 Number of HSP's gapped (non-prelim): 0 length of query: 1219 length of database: 492,079 effective HSP length: 87 effective length of query: 1132 effective length of database: 344,179 effective search space: 389610628 effective search space used: 389610628 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719442|ref|YP_003874974.1| glycosyltransferase [Spirochaeta thermophila DSM 6192] (314 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431038|ref|NP_147219.2| dolichol-phosphate mannosyltransfe... 90 8e-20 gi|14602202|ref|NP_147771.1| glycosyl transferase [Aeropyrum per... 41 3e-05 gi|14601240|ref|NP_147774.1| glycosyl transferase [Aeropyrum per... 41 4e-05 >gi|118431038|ref|NP_147219.2| dolichol-phosphate mannosyltransferase [Aeropyrum pernix K1] Length = 361 Score = 89.7 bits (221), Expect = 8e-20 Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 1/111 (0%) Query: 2 ISIIIPVYNEEEVLPALYERLTRVMEGTG-EAYELVFVDDGSTDRTYQLLKDLHRRDPRC 60 +S+I+P NE + + LY L + +EG G E +E+VFVDD STD T + ++ L R DPR Sbjct: 11 VSVIVPTLNERDNIRPLYVGLKKSLEGAGLECFEIVFVDDSSTDGTIEEVERLSRSDPRV 70 Query: 61 KVIHFSRNFGHQIAITAGMDHARGDAVIIIDADLQDPPELIPRMLEKWRAG 111 ++I G A+ G+ ARG +++DADLQ PPE +P ++EK G Sbjct: 71 RLIVRRGEKGLSRAVLEGLRRARGRVAVVMDADLQHPPETVPLLVEKVAGG 121 >gi|14602202|ref|NP_147771.1| glycosyl transferase [Aeropyrum pernix K1] Length = 283 Score = 41.2 bits (95), Expect = 3e-05 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 12/94 (12%) Query: 1 MISIIIPVYNEEEVLPALYERLTRVMEGTGEAYELVFVDDGSTDRTYQLLKDLHRRDPRC 60 ++SI+IP YN E+ L E + R T + E++ VD+ STD T ++ + + R + Sbjct: 18 LVSIVIPTYNSEKTLSLTLESIKR---QTYKNIEVIIVDNYSTDGTVKIAEKYNARVIQT 74 Query: 61 K-VIHFSRNFGHQIAITAGMDHARGDAVIIIDAD 93 + ++R GH HA+G+ +++D+D Sbjct: 75 SGGLLWARYLGHL--------HAKGEVELLLDSD 100 >gi|14601240|ref|NP_147774.1| glycosyl transferase [Aeropyrum pernix K1] Length = 290 Score = 40.8 bits (94), Expect = 4e-05 Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 19/224 (8%) Query: 1 MISIIIPVYNEEEVLPALYERLTRVMEGTGE-------AYELVFVDDGSTDRTYQLLKDL 53 ++S++IPV E L YER+ + + +YE++ V D T + + L Sbjct: 2 IVSVVIPVAKEGNTL---YERIHLINKHFNSLSSSHKFSYEIILVSDIFHKPTLKAMIRL 58 Query: 54 HRRDPRCKVIHFSRNFGHQIAITAGMDHARGDAVIIIDADLQDPPELIPR-MLEKWRAGA 112 + + K + ++ G +I + +RGD ++I+DAD+ P I + ++ G Sbjct: 59 AKENV-AKCLLLTQRIGKGGSIKNAIPFSRGDYIVILDADIPVRPIFINQAVVLAMNLGI 117 Query: 113 QIVHARRVKRKGEGLFKRATAALFYRILKALTDVEIPVDVGDFRLMDRKVVDSLKGMRER 172 ++ A RV R L +R + + ++ L + +++ R+ + R R Sbjct: 118 DLIIANRVYRT-HSLLRRVLSVAYNSLVNLLFKTGLRDHQAGLKILSRRAAKIILMKRTR 176 Query: 173 N---RFVRGLVSWT---GFRQDEVTYVRDPRYAGTTKYPLGKMI 210 + +V W G R V V + G+T P+ ++ Sbjct: 177 TDGLAYDTEIVVWAKRHGLRYRAVNVVWREQREGSTIPPMRALL 220 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 310,819 Number of Sequences: 1700 Number of extensions: 13683 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 3 length of query: 314 length of database: 492,079 effective HSP length: 77 effective length of query: 237 effective length of database: 361,179 effective search space: 85599423 effective search space used: 85599423 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719443|ref|YP_003874975.1| membrane spanning protein [Spirochaeta thermophila DSM 6192] (146 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.140 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 140,210 Number of Sequences: 1700 Number of extensions: 5461 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 146 length of database: 492,079 effective HSP length: 69 effective length of query: 77 effective length of database: 374,779 effective search space: 28857983 effective search space used: 28857983 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719444|ref|YP_003874976.1| xylanase [Spirochaeta thermophila DSM 6192] (451 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 448,831 Number of Sequences: 1700 Number of extensions: 18974 Number of successful extensions: 48 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48 Number of HSP's gapped (non-prelim): 0 length of query: 451 length of database: 492,079 effective HSP length: 80 effective length of query: 371 effective length of database: 356,079 effective search space: 132105309 effective search space used: 132105309 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719445|ref|YP_003874977.1| xylanase [Spirochaeta thermophila DSM 6192] (319 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 343,386 Number of Sequences: 1700 Number of extensions: 15115 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 319 length of database: 492,079 effective HSP length: 77 effective length of query: 242 effective length of database: 361,179 effective search space: 87405318 effective search space used: 87405318 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719446|ref|YP_003874978.1| hypothetical protein STHERM_c17700 [Spirochaeta thermophila DSM 6192] (296 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 251,072 Number of Sequences: 1700 Number of extensions: 9691 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 296 length of database: 492,079 effective HSP length: 76 effective length of query: 220 effective length of database: 362,879 effective search space: 79833380 effective search space used: 79833380 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719447|ref|YP_003874979.1| oxidoreductase [Spirochaeta thermophila DSM 6192] (326 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430958|ref|NP_147090.2| dihydroorotate dehydrogenase 1B [A... 64 7e-12 >gi|118430958|ref|NP_147090.2| dihydroorotate dehydrogenase 1B [Aeropyrum pernix K1] Length = 306 Score = 63.5 bits (153), Expect = 7e-12 Identities = 77/304 (25%), Positives = 121/304 (39%), Gaps = 14/304 (4%) Query: 2 ELSTRYLGLSLKNPLIVGASPLTADVSHLVSCETHGAAAVVLRSL-FQEEIAEGVEHLKS 60 ELS GL L+ P+ + L + E G V +S+ +Q HL Sbjct: 6 ELSISIAGLRLQRPVGNASGILGWEPREARLVEEGGGGFFVAKSVTYQPRKGYPQPHLYP 65 Query: 61 LSEGFHTEAADYLTHFGTQQALEAYLSLVREAKDRLSIPVIASLNCSSREWWAEAASRIE 120 ++ G L + G ++A + V EA SIPVIAS+ + W E AS +E Sbjct: 66 VAGGIVNAVG--LANPGFREASKMLAQTVEEA----SIPVIASIAGGAPGEWVEMASTLE 119 Query: 121 EAGADALELNVA--PFPSNDAESSQEVEERIYDIVRTARSAVSVPIAVKVGPYFTSLGHL 178 EAG A+ELN++ F E Q+ + +V S + +P+ K+G Y L Sbjct: 120 EAGVSAVELNLSCPHFAGGGLELGQD-PAAVASVVSAVASTLRIPVIAKLG-YSDRLVDA 177 Query: 179 LARIEALGAGGVVLFNRFYQVDIAPSTRRLVSGHR---LSDPHEFSHTLRWTALEAPRRN 235 ++ GA G+ L N + I ++ V G+R LS +R Sbjct: 178 ASKALEAGARGLTLINSMRAMKIDVYAKKPVLGNRVGGLSGKPIHPIAVRAVYEVYGETR 237 Query: 236 LDIVASCGIHSGLDIAKXXXXXXXXXXXXXXXXRHGFGHIEKMVHELEAWLSEQGFSSLR 295 DI A+ G+ S D + G + +V + +L +GF SL+ Sbjct: 238 ADIFAAGGVESWEDAVEFYLAGAKAVQVGAAFITIGPHVLRSIVEGVRRYLWVEGFRSLQ 297 Query: 296 EAKG 299 + G Sbjct: 298 DIVG 301 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 312,410 Number of Sequences: 1700 Number of extensions: 12723 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 1 length of query: 326 length of database: 492,079 effective HSP length: 77 effective length of query: 249 effective length of database: 361,179 effective search space: 89933571 effective search space used: 89933571 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719448|ref|YP_003874980.1| permease [Spirochaeta thermophila DSM 6192] (300 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431931|ref|NP_148709.2| ABC transporter permease [Aeropyru... 138 2e-34 gi|118430861|ref|NP_146935.2| ABC transporter permease [Aeropyru... 69 2e-13 gi|118431932|ref|NP_148710.2| ABC transporter permease [Aeropyru... 60 7e-11 >gi|118431931|ref|NP_148709.2| ABC transporter permease [Aeropyrum pernix K1] Length = 304 Score = 138 bits (347), Expect = 2e-34 Identities = 94/285 (32%), Positives = 136/285 (47%), Gaps = 21/285 (7%) Query: 5 PIILAGLGGLFSERSGVVNIALEGIMMVGGFTAAALVVVLEPLTPXXXXXXXXXXXXXXX 64 PI LA +G + SER+G+VNI LEGIM+ + A A+ + LT Sbjct: 24 PITLASIGEIASERAGIVNIGLEGIMLASAWAAVAVYI----LTGWGPLAGYLLGALLGL 79 Query: 65 XXXXXHAVASVHLRADQIISGTALNILAGGLTVYLCQILFGQQRTRAFSVGLRKVTVPFL 124 H V SV+L+ DQI++G LNI + G TV +L+G FS P + Sbjct: 80 SIGVLHGVVSVYLKGDQIVTGVGLNIFSAGATVVGTYMLWG-----TFS------NSPPV 128 Query: 125 EDIP--LVGPLFFSEIYPTFYLALFLVVITWIVVYRTVFGLRLRACGEHPEAAASMGIDV 182 E +P ++ + S + P L+L VI W+ +YRT+ GLRLR+CGE P +A +MG++V Sbjct: 129 EPMPGFVIAGVRISPMVP---LSLAAGVIVWLFLYRTIAGLRLRSCGEDPRSAEAMGVNV 185 Query: 183 YRMRYXXXXXXXXXXXXXXXXXXXXQDIQYTLTSIHGTGFIALASLIFGKWNPWGVLGAA 242 + + G GFIALA++ F WNP L Sbjct: 186 ALYQVAAAGFAGLMAGLAGAYLSIDYQGVFAKNMTAGRGFIALANVAFSGWNPLAALLGG 245 Query: 243 TFFGFSQALSFYVNDISFLQSIPLEFFHAFPYVLTIVALLAFAGR 287 FGFS+AL+ Y+N IS + + PY+ T+ A+ A R Sbjct: 246 YVFGFSEALAIYLN-ISLEATAASNLVNTIPYIATLAAVTLVALR 289 >gi|118430861|ref|NP_146935.2| ABC transporter permease [Aeropyrum pernix K1] Length = 277 Score = 68.6 bits (166), Expect = 2e-13 Identities = 78/299 (26%), Positives = 113/299 (37%), Gaps = 36/299 (12%) Query: 5 PIILAGLGGLFSERSGVVNIALEGIMMVGGFTAAALVVVLEPLTPXXXXXXXXXXXXXXX 64 P+ LA LG ER+G VN+ ++G+M VG A V L Sbjct: 11 PLSLAALGEAVLERTGRVNLGVDGLMAVGAAVGALAGVETGSLLAGLAAGALAGGVGSL- 69 Query: 65 XXXXXHAVASVHLRADQIISGTALNILAGGLTVYLCQILFGQQRTRAFSVGLRKVTVPFL 124 S + D++ +N++ GL V+ I G VG + P Sbjct: 70 ---------SYIILTDRL----GVNMIVAGLLVFFAGIGLGDL------VGSKIAGRP-- 108 Query: 125 EDIPLVGPLFFSEIYPTFYLALFLVVITWIVVYRTVFGLRLRACGEHPEAAASMGIDVYR 184 GP+ S +Y T V +++Y TV G LR GE+P AA G+ V+R Sbjct: 109 ------GPVLTS-LYTTAATIGIAAVALHLILYNTVTGTALRVVGENPAAAKERGVPVWR 161 Query: 185 MRYXXXXXXXXXXXXXXXXXXXXQDIQYTLTSI-HGTGFIALASLIFGKWNPWGVLGAAT 243 +R + + G G++AL +I G W P GVL A+T Sbjct: 162 LRLSAALVQGLSAGLAGYIMVAGLSYGKWYSGVTAGLGWVALGIVILGYWTPIGVLIAST 221 Query: 244 FFGFSQALSFYVNDISFLQSIPLEFFHAFPYVLTIVALLAFAGRYS--GPRAAGRIYQR 300 S S I+ IP A PY+L ++ L A Y G R I++R Sbjct: 222 --AVSTVFSMR-TQIAAATGIP-PLADAIPYILVLILLAAGTHLYERIGLRPPASIWRR 276 >gi|118431932|ref|NP_148710.2| ABC transporter permease [Aeropyrum pernix K1] Length = 359 Score = 60.1 bits (144), Expect = 7e-11 Identities = 76/305 (24%), Positives = 115/305 (37%), Gaps = 20/305 (6%) Query: 6 IILAGLGGLFSERSGVVNIALEGIMMVGGFTAAALVVVLE-PLTPXXXXXXXXXXXXXXX 64 +++ L R G NI EG + G AAALV L P TP Sbjct: 63 LVMTALAFAIPLRMGFFNIGAEGQLYAGA--AAALVAALTLPYTPLPALVAAAVAGGLMG 120 Query: 65 XXXXXHAVASVHLRADQIISGTALNILA-GGLTVYLCQILFGQQRTRAFSVGLRKVTVPF 123 + V L ++++S LN +A L + + L + + +P+ Sbjct: 121 LFA---GLLRVKLNINEVLSTIMLNWIAFWSLRYIVVEYLADPVYSHLTLEVPLEARIPW 177 Query: 124 LEDIPLVGPL---FFSEIYPTFYLALFLVVITWIVVYRTVFGLRLRACGEHPEAAASMGI 180 + L PL S +++L + W V+Y+TV GLR R G + AAAS G+ Sbjct: 178 IPSELLPPPLQEHLRSGFPMIVFVSLATALAAWTVIYKTVPGLRYRFAGANEYAAASRGV 237 Query: 181 DVYRMRYXXXXXXXXXXXXXXXXXXXXQD--IQYTLTSIHGTGFIALASLIFGKWNPWGV 238 V R++ I TL+ + G GF + + G+ NP G+ Sbjct: 238 AVGRVKLASMAAAGVLAGLGGALLILGHSYRIDSTLSGLFGYGFEGIGVALIGRNNPLGI 297 Query: 239 LGAATFFGFSQALSFYVNDISFLQSIPLEFFHAF--PYVLTIVALLAFAGRYSG-PRAAG 295 + A+ F G L+ I IP E + T+ AL RY+G PR Sbjct: 298 VAASLFVG---DLASGSERIQVTARIPAELADVVNGAIIFTVAALSGL--RYTGIPRRLS 352 Query: 296 RIYQR 300 I R Sbjct: 353 SIAGR 357 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.145 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 267,047 Number of Sequences: 1700 Number of extensions: 9968 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 3 length of query: 300 length of database: 492,079 effective HSP length: 76 effective length of query: 224 effective length of database: 362,879 effective search space: 81284896 effective search space used: 81284896 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719449|ref|YP_003874981.1| permease [Spirochaeta thermophila DSM 6192] (355 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431932|ref|NP_148710.2| ABC transporter permease [Aeropyru... 108 2e-25 gi|14600420|ref|NP_146934.1| ABC transporter permease [Aeropyrum... 68 4e-13 >gi|118431932|ref|NP_148710.2| ABC transporter permease [Aeropyrum pernix K1] Length = 359 Score = 108 bits (271), Expect = 2e-25 Identities = 95/346 (27%), Positives = 145/346 (41%), Gaps = 28/346 (8%) Query: 3 LSLSAVVLGFLAGAVIITLTGRSPGLMFAAMVKAFSGLDILRGSFNARYIGEFLIQMIPI 62 L+L+AV LG +AGA+++ L G P A ++ +F Y FL++ + Sbjct: 15 LTLAAVGLGLVAGAIVLALGGADPLRGVADILLSF-----------IYYPEIFLVRSSIL 63 Query: 63 TLTGLSVGFAFRAGLFNIGAEGQLMMGALGGTMVALLVPAPPWLHLPLCLLGAMVXXXXX 122 +T L+ R G FNIGAEGQL GA + AL +P P LP L+ A V Sbjct: 64 VMTALAFAIPLRMGFFNIGAEGQLYAGAAAALVAALTLPYTP---LP-ALVAAAVAGGLM 119 Query: 123 XXXXXXXKAWYNLHEVVVTIMLNYTAL---------HLSNWALLHVVGTVDRVKTSPFPA 173 + N++EV+ TIMLN+ A +L++ H+ V P+ Sbjct: 120 GLFAGLLRVKLNINEVLSTIMLNWIAFWSLRYIVVEYLADPVYSHLTLEVPLEARIPWIP 179 Query: 174 SALLKSEFLSSITRGSRLHWGLLIMVVCILVYWVVIEKTTLGFGLRATGHNKDAARFAGF 233 S LL + G + + + + L W VI KT G R G N+ AA G Sbjct: 180 SELLPPPLQEHLRSGFPMI--VFVSLATALAAWTVIYKTVPGLRYRFAGANEYAAASRGV 237 Query: 234 PIAGYTMLT-XXXXXXXXXXXXXXXXXXXXXXXRVLPAFEGYGMDGIAVALVGGNTAWGI 292 + + + L GYG +GI VAL+G N GI Sbjct: 238 AVGRVKLASMAAAGVLAGLGGALLILGHSYRIDSTLSGLFGYGFEGIGVALIGRNNPLGI 297 Query: 293 AASGALFGMLKAAQPLMQ-SQGVPREIAGIIQASIVLFVAMRYGIQ 337 A+ G L + +Q + +P E+A ++ +I+ VA G++ Sbjct: 298 VAASLFVGDLASGSERIQVTARIPAELADVVNGAIIFTVAALSGLR 343 >gi|14600420|ref|NP_146934.1| ABC transporter permease [Aeropyrum pernix K1] Length = 311 Score = 67.8 bits (164), Expect = 4e-13 Identities = 70/329 (21%), Positives = 133/329 (40%), Gaps = 28/329 (8%) Query: 4 SLSAVVLGFLAGAVIITLTGRSPGLMFAAMVKAFSGLDILRGSFNARYIGEFLIQMIPIT 63 S+ VL + ++++ G P ++KA + ++ S++ Y ++ Sbjct: 6 SIGVAVLSTIIAGIMLSFIGPGPAAFVEGLIKAATTPSLV--SYSVIYAA-----ILVAA 58 Query: 64 LTGLSVGFAFRAGLFNIGAEGQLMMGALGGTMVALLVPAPPWLHLPLCLLGAMVXXXXXX 123 +GL + ++RAGL IG E Q+ A+ AL A L LP L A + Sbjct: 59 ASGLVL--SYRAGLITIGVEAQVTASAVA----ALYALAYAGLGLPGALTLAAIVSLAIG 112 Query: 124 XXXXXXKAWYNLHEVVVTIMLNYTALHLSNWALLHVVGTVDRVKTSPFPASALLKSEFLS 183 + + +++E++ ++M+NY L++ N + + P A K+ + Sbjct: 113 IVIAALRVYLDVNEILSSLMINYIVLYMVNGLV-----------SGPLREGAFTKTRSIE 161 Query: 184 SITRGSRLHWGLLIMVVCILVYWVVIEKTTLGFGLRATGHNKDAARFAGFPIAGYTMLTX 243 + L GL + + L W+++E+T+LG LRA+G AA A +L+ Sbjct: 162 AFV--GPLEAGLAAVSMAALS-WILLERTSLGISLRASGPAPRAADIYTIGRARAMLLSS 218 Query: 244 XXXXXXXXXXXXXXXXXXXXXXRVLPAFEGYGMDGIAVALVGGNTAWGIAASGALFGMLK 303 L +GYG + V+ + + + F + Sbjct: 219 LPQSLAAAAAGLILLGGIQTVFTALKQPQGYGYAAVLVSWMAELSPTTLIPVSLFFAWIA 278 Query: 304 AAQPLMQSQGVPREIAGIIQASIVLFVAM 332 A ++Q+ G+P + ++Q SI L V M Sbjct: 279 GAGFILQAYGMPSSLVLLLQ-SIALTVYM 306 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.142 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 325,095 Number of Sequences: 1700 Number of extensions: 12943 Number of successful extensions: 89 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 81 Number of HSP's gapped (non-prelim): 2 length of query: 355 length of database: 492,079 effective HSP length: 78 effective length of query: 277 effective length of database: 359,479 effective search space: 99575683 effective search space used: 99575683 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719450|ref|YP_003874982.1| ABC transporter [Spirochaeta thermophila DSM 6192] (515 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 311 2e-86 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 236 1e-63 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 125 2e-30 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 111 5e-26 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 110 6e-26 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 108 3e-25 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 101 5e-23 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 95 5e-21 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 93 1e-20 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 93 2e-20 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 91 5e-20 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 91 5e-20 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 91 9e-20 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 88 6e-19 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 87 1e-18 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 86 2e-18 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 84 6e-18 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 84 1e-17 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 83 1e-17 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 83 1e-17 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 83 1e-17 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 82 2e-17 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 77 8e-16 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 77 1e-15 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 77 1e-15 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 76 2e-15 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 75 4e-15 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 74 8e-15 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 73 2e-14 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 71 7e-14 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 70 2e-13 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 67 1e-12 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 65 3e-12 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 65 4e-12 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 65 5e-12 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 64 7e-12 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 60 1e-10 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 55 5e-09 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 52 4e-08 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 48 5e-07 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 311 bits (797), Expect = 2e-86 Identities = 209/502 (41%), Positives = 286/502 (56%), Gaps = 22/502 (4%) Query: 10 YVVEMMDIVKDFP-GIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVI 68 + V M IVK +P G++A D+V +R G +HALLGENGAGK+TLM IL+G P G I Sbjct: 11 HAVAMRGIVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEI 70 Query: 69 RVRGREVQVSNPNVATSLGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKV 128 V GR+V P A GI MV+Q F+LV + TV ENI + L AR++ Sbjct: 71 YVWGRKVSWRGPWDAIRNGIAMVYQQFRLVESMTVEENIAIYLSSLG---LGRSEARRRT 127 Query: 129 ARISREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELME 188 + GLE+D + DL +G++QRVEI+K L A++LI DEPT+ LTP E E+L Sbjct: 128 LETAERLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFS 187 Query: 189 IMRKLAGSGKTIILITHKLKEIKEVADECSVLRRGRLVATF-PVSDVSEEEMAELMVGRE 247 +R L G +++ ITHKL E+ VAD +VLRRGR+ A V SEEE+A LMVG Sbjct: 188 TLRLLKDMGVSVVYITHKLGEVVRVADRVTVLRRGRVSAVIEDVGRTSEEELARLMVG-- 245 Query: 248 VSFKVEKDAPRP----GSPALEIRELSVRNERGILAVEGLSLTVREGEILGLCGVDGNGQ 303 + PRP G L +R +SV + G+ V +SL VREGEI+G+ GV GNGQ Sbjct: 246 ---TLPPPTPRPPGKVGRELLSVRGVSVVVD-GVERVREVSLEVREGEIVGIAGVAGNGQ 301 Query: 304 RELLYALAGLLPVESGRILLSGKDITHEPTRRKLDAGLGFVPEDRQRHGLILAFSVGENL 363 EL+ A+ GL G I + G+ I E + AG G++ DR + L + +SV EN+ Sbjct: 302 EELVDAIIGLRRPVRGSIEVQGRRI--EGSLDFYRAGGGYIAGDRGK-VLAMDYSVAENI 358 Query: 364 VIHDYGRPPFSRYGILRYETIYEHAETLMSQFDVRAARGARTSAGELSGGNQQKAIIARE 423 Y S+ +LR + + L+ +F + AR T G LSGGNQQK I+ E Sbjct: 359 AFLYY---TASKTLLLRRSRLEDLFRRLVERFRL-VARSPWTPVGRLSGGNQQKVIVGSE 414 Query: 424 VHRSPRVLVVAQPTRGLDVGAIEYIHRRIVEERDKGRAILLVSFDLDEILDLSDRIAVIY 483 V R ++LV PT+GLD+ ++ + E +G ILLVS DLDEIL+LSDRI V+ Sbjct: 415 VLRGFKLLVAVNPTQGLDIATTSFVRNLLSELARQGAGILLVSTDLDEILELSDRIYVMS 474 Query: 484 RGRIVAEVAAGETDENELGLLM 505 GR+ + + +LG+LM Sbjct: 475 GGRVTGVLERSQATPEKLGVLM 496 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 236 bits (601), Expect = 1e-63 Identities = 163/501 (32%), Positives = 258/501 (51%), Gaps = 22/501 (4%) Query: 12 VEMMDIVKDFPG-IRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRV 70 VE +D+V +PG + A VT G + ALLGENGAGK+TL+ + G+ P G I V Sbjct: 7 VEDLDVV--YPGGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILV 64 Query: 71 RGREVQVSNPNVATSLGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVAR 130 G E++ P + GI M Q+ + E++ + + G + AR +A Sbjct: 65 DGYELRPKGPGDSLRSGIYMASQNPPVYPGIKAYEDLAV-TLMVAGRKAGLRQARTMLAE 123 Query: 131 ISREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELMEIM 190 S GL +DPD + ++ +QR+E++K L +R ++ DEPT LTP+E ++E Sbjct: 124 ASEALGLNIDPDRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAA 183 Query: 191 RKLAGSGKTIILITHKLKEIKEVADECSVLRRGRLVATFPVSDVSEEEMAELMVGREVSF 250 +LA SG ++L+TH++ E E AD +LR+G V P S EE+A+LM G ++ Sbjct: 184 GRLAASGAAVLLVTHRIGEAMEHADRLVILRKGVKVYEGPPPS-STEEVAKLMFGEVLAP 242 Query: 251 KVEKD---APRPGSPALEIRELSVRNERGILAVEGLSLTVREGEILGLCGVDGNGQRELL 307 + K A G P L + +S+ + +E VR+GE++G+ GV GNGQ EL Sbjct: 243 REPKTFTAATSTGRPVLSVDRVSLPPRLRMARLE-----VRQGEVVGVAGVAGNGQEELF 297 Query: 308 YALAGLLPVESGRILLSGKDITHEPTRRKLDAGLGFVPEDRQRHGLILAFSVGENLVIHD 367 + GL GRIL++G D+T P + GLG +PE+R H L+ S+ N+ + Sbjct: 298 EVIVGLRKPAKGRILIAGVDVTRAPPLARRRLGLGVIPEERLGHALVPGESIAFNIALSI 357 Query: 368 YGRPPFSRYGILRYETIYEH-AETLMSQFDVRAARGARTSAGELSGGNQQKAIIAREVHR 426 + +R G + YE AE ++ ++A R ELSGGN Q+ ++ARE+ Sbjct: 358 H----TARDGFIVDWRYYEKLAEEMIRDMGIKAV-SPRQMVDELSGGNMQRLVLARELWL 412 Query: 427 SPRVLVVAQPTRGLDVGAIEYIHRRIVEERDKGRAILLVSFDLDEILDLSDRIAVIYRGR 486 PR+LV P GLD+ + + + ++G +L++ DLD +L +S++I V G Sbjct: 413 KPRLLVAMNPAAGLDLEGQQAVAEMMRMSSERG-GVLVIDEDLDFLLRVSNKIYVASGGI 471 Query: 487 IVAEVAAGETDENELGLLMAG 507 + T+E + M G Sbjct: 472 VKGPYL--PTEEKSIVTAMGG 490 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 125 bits (314), Expect = 2e-30 Identities = 90/265 (33%), Positives = 139/265 (52%), Gaps = 29/265 (10%) Query: 10 YVVEMMDIVKDFP---------GIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGL 60 Y VE +VK++ IRA D V L+V GT+ +LLG NGAGK+TL+ IL L Sbjct: 3 YAVEAEALVKEYRMGLLPWRARTIRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTL 62 Query: 61 HHPDSGVIRVRGREVQVSNPNVATSLGIGMVHQHFKLVHNFTVAENI-----VMGSEPRR 115 PDSG RV G +V NV + +G+ + + L + +N+ + G PR Sbjct: 63 LLPDSGWARVAGFDVVREANNVRSRIGVVLGGER-ALYWRLSGWDNLWFFSQLYGIPPRE 121 Query: 116 GPFLDIETARQKVARISREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPT 175 A+++V + GLE R+E+ S G +QR+ I + L D +L+ DEPT Sbjct: 122 --------AKRRVKELLEIVGLEEWAHVRVENYSKGMKQRLHIARGLINDPEVLLLDEPT 173 Query: 176 AVLTPQEIEELMEIMRKLAGSGKTIILITHKLKEIKEVADECSVLRRGRLVATFPVSD-- 233 L P+ E+ I+R++ G+T++L TH + E +E++D +++ +GR+VA P D Sbjct: 174 IGLDPKAAREVRSIIRRIVREGRTVLLTTHYMVEAEELSDRVAIISKGRIVAEGPPEDLK 233 Query: 234 --VSEEEMAELMV--GREVSFKVEK 254 V E + EL V G VS +E+ Sbjct: 234 SLVGGESVIELKVMGGDRVSMLLER 258 Score = 78.2 bits (191), Expect = 4e-16 Identities = 73/221 (33%), Positives = 104/221 (47%), Gaps = 23/221 (10%) Query: 275 RGILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRILLSGKDITHEPTR 334 R I A++G+ L V G + L G +G G+ L+ L+ LL +SG ++G D+ E Sbjct: 24 RTIRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANN 83 Query: 335 RKLDAGLGFVPEDRQRHGLILAFSVGENLVIHD--YGRPPFSRYGILRYETIYEHAETLM 392 + G+ E L S +NL YG PP R R + + E Sbjct: 84 VRSRIGVVLGGE----RALYWRLSGWDNLWFFSQLYGIPP--REAKRRVKELLEI----- 132 Query: 393 SQFDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLDVGA---IEYIH 449 V A S G +Q+ IAR + P VL++ +PT GLD A + I Sbjct: 133 ----VGLEEWAHVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSII 188 Query: 450 RRIVEERDKGRAILLVSFDLDEILDLSDRIAVIYRGRIVAE 490 RRIV E GR +LL + + E +LSDR+A+I +GRIVAE Sbjct: 189 RRIVRE---GRTVLLTTHYMVEAEELSDRVAIISKGRIVAE 226 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 111 bits (277), Expect = 5e-26 Identities = 70/232 (30%), Positives = 121/232 (52%), Gaps = 12/232 (5%) Query: 9 DYVVEMMDIVKDFPGIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVI 68 D ++ + D+ K F GI A D V L + G + L+G NG+GK+TL+N++ G + PD G + Sbjct: 4 DIILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRV 63 Query: 69 RVRGREVQVSNPNVATSLGIGMVHQHFKLVHNFTVAENIVMGSEP----------RRGPF 118 +GR++ +P+ + LG+ Q K N TV EN++ ++ R + Sbjct: 64 LFKGRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLW 123 Query: 119 LDIE-TARQKVARISREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAV 177 L E A + I GL+ D R +LS G + +EI + + + A ++I DEP A Sbjct: 124 LGFEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAG 183 Query: 178 LTPQEIEELMEIMRKLA-GSGKTIILITHKLKEIKEVADECSVLRRGRLVAT 228 + P+ +ME ++ LA G T ++I H++ +KE D + G+++A+ Sbjct: 184 VNPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIAS 235 Score = 69.7 bits (169), Expect = 2e-13 Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 51/264 (19%) Query: 260 GSPALEIRELSVRNERGILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESG 319 G L + +L R GI+A++ ++L + G++ L G +G+G+ L+ ++G + G Sbjct: 3 GDIILRVEDLEKRFG-GIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGG 61 Query: 320 RILLSGKDITHEPTRRKLDAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRPPFSRYGIL 379 R+L G+DIT G P + + GL+ F + + PF+ +L Sbjct: 62 RVLFKGRDIT------------GMSPHEISKLGLVRTFQIPK----------PFTNLTVL 99 Query: 380 RY---------ETIY--EHAETLMSQFDVRAARGA-------------RTSAGELSGGNQ 415 E +Y A L F+ RAA A +GELSGG Sbjct: 100 ENVLTAADSPGENVYLAGLARRLWLGFEKRAAARAFEILGWVGLDHMWDRRSGELSGGQM 159 Query: 416 QKAIIAREVHRSPRVLVVAQPTRGLDVGAIEYIHRRI-VEERDKGRAILLVSFDLDEILD 474 + IAR + + ++++ +P G++ I RI R+KG L++ + + + Sbjct: 160 KLLEIARAIMKGAEMIIMDEPAAGVNPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKE 219 Query: 475 LSDRIAVIYRGRIVAEVAAGETDE 498 DR+ + G++ +A+G+ DE Sbjct: 220 YVDRVYAMSMGKV---IASGKPDE 240 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 110 bits (276), Expect = 6e-26 Identities = 66/229 (28%), Positives = 120/229 (52%), Gaps = 3/229 (1%) Query: 11 VVEMMDIVKDFPGIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRV 70 ++++ D+ K F GI A V+ VR G L+G NGAGK+TL NI+ G++ PD G + Sbjct: 4 ILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIY 63 Query: 71 RGREVQVSNPNVATSLGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVAR 130 +G ++ + GI Q + + N TV N+++G+ R DI AR++ Sbjct: 64 KGVDITGWPAYRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTN---DIREARERAME 120 Query: 131 ISREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELMEIM 190 GL D +DL++ ++R+E+ + L +L+ DE A L P+E+++L+ + Sbjct: 121 AIDMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTL 180 Query: 191 RKLAGSGKTIILITHKLKEIKEVADECSVLRRGRLVATFPVSDVSEEEM 239 +++ G TII++ H ++ + A+ VL G +A +V+ ++ Sbjct: 181 LEISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVASNKL 229 Score = 73.9 bits (180), Expect = 8e-15 Identities = 60/239 (25%), Positives = 116/239 (48%), Gaps = 15/239 (6%) Query: 264 LEIRELSVRNERGILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRILL 323 L++R++ R GI A++G+S +VR GE +GL G +G G+ L ++G+ + GR++ Sbjct: 5 LDVRDVYKRFG-GIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIY 63 Query: 324 SGKDITHEPTRRKLDAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRPPFSRYGILRYET 383 G DIT P R+ AG + Q + +V N+++ +LR Sbjct: 64 KGVDITGWPAYRRSRAG---IARTFQIVRPLANLTVLNNVIVG----------ALLRTND 110 Query: 384 IYEHAETLMSQFDVRAARGAR-TSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLDV 442 I E E M D+ G A +L+ +++ +AR + P +L++ + GL Sbjct: 111 IREARERAMEAIDMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRP 170 Query: 443 GAIEYIHRRIVEERDKGRAILLVSFDLDEILDLSDRIAVIYRGRIVAEVAAGETDENEL 501 ++ + ++E +G I++V + +++ ++R+ V++ G +AE E N+L Sbjct: 171 REVDDLVYTLLEISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVASNKL 229 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 108 bits (270), Expect = 3e-25 Identities = 68/244 (27%), Positives = 129/244 (52%), Gaps = 14/244 (5%) Query: 16 DIVKDFPGIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRVRGREV 75 +I F G+ A D+V++ VR G I ++G NGAGK++L+N++ G++ P G + +GR++ Sbjct: 6 NITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDI 65 Query: 76 QVSNPNVATSLGIGMVHQHFKLVHNFTVAENIVMGSEP-RRGPFLDIE-----------T 123 P+ +LG+ QH +L H+ TV ENI++ P RG L+ Sbjct: 66 TGLKPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWEVE 125 Query: 124 ARQKVARISREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEI 183 AR++ + L + I L G Q++V++ L ++ +++ DEP A L+ +E Sbjct: 126 ARERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEK 185 Query: 184 EELME-IMRKLAGSGKTIILITHKLKEIKEVADECSVLRRGRLVATFPVSD-VSEEEMAE 241 E+++ I+ T++LI H ++ + +V D V+ G+++ P + V++E + + Sbjct: 186 EDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHEAVADERVRK 245 Query: 242 LMVG 245 +G Sbjct: 246 AYLG 249 Score = 87.0 bits (214), Expect = 1e-18 Identities = 64/227 (28%), Positives = 116/227 (51%), Gaps = 20/227 (8%) Query: 276 GILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRILLSGKDITHEPTRR 335 G+ A++ +S+ VR GEILG+ G +G G+ LL + G+ + GR+ G+DIT + Sbjct: 13 GVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDITGLKPHQ 72 Query: 336 KLDAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRPPFSRYGIL----------RYET-I 384 ++ GL Q L + +V EN+++ + P++R IL R+E Sbjct: 73 RITLGLS---RTFQHSELFHSMTVLENIMVRLH---PWTRGSILEKALWAFRAKRWEVEA 126 Query: 385 YEHAETLMSQFDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLDVGA 444 E AE ++ D+ R + G L G Q+K +A + ++P V+++ +P GL Sbjct: 127 RERAEHVIDLLDLHEHR--HSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEE 184 Query: 445 IEYIHRRIVEERD-KGRAILLVSFDLDEILDLSDRIAVIYRGRIVAE 490 E I R I+E + ++L+ D++ + D+ DR+ V+ G+++ E Sbjct: 185 KEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFE 231 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 101 bits (251), Expect = 5e-23 Identities = 65/217 (29%), Positives = 111/217 (51%), Gaps = 5/217 (2%) Query: 12 VEMMDIVKDFPGIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRVR 71 + + +VK F + A DHV L +++G LLG +G GK+T + ++ GL +PD G I + Sbjct: 4 IRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILID 63 Query: 72 GREVQVSNPNVATSLGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPF-LDIETARQKVAR 130 G +V +P + MV Q++ L + +V +NI RR L + R++V Sbjct: 64 GEDVTFKDPK---DRNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIE 120 Query: 131 ISREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELMEIM 190 +++ +E D + LS G QQRV + + L R ++ + DEP + L + + Sbjct: 121 VAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAEL 180 Query: 191 RKLAGSGK-TIILITHKLKEIKEVADECSVLRRGRLV 226 +KL K T + +TH E +AD +V+ +GR+V Sbjct: 181 KKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVV 217 Score = 72.0 bits (175), Expect = 3e-14 Identities = 62/217 (28%), Positives = 108/217 (49%), Gaps = 20/217 (9%) Query: 277 ILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRILLSGKDITHEPTRRK 336 ++AV+ + L++++GE L G G G+ L +AGL + GRIL+ G+D+T + + Sbjct: 16 VVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILIDGEDVTFKDPK-- 73 Query: 337 LDAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRPPFSRYGILRYE---TIYEHAETLMS 393 D + V Q + L SV +N+ + R G+ + + + E A+ L Sbjct: 74 -DRNVAMV---FQNYALYPHMSVFDNIAFTLHLRR--KEMGLTKDDIRRRVIEVAKLL-- 125 Query: 394 QFDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLDVGAIEYIHRRIV 453 R G+LSGG QQ+ +AR + R P+V ++ +P LD + R + Sbjct: 126 ----RIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLD-ALLRLAMRAEL 180 Query: 454 EERDKGRAI--LLVSFDLDEILDLSDRIAVIYRGRIV 488 ++ K I + V+ D E + ++DRIAV+ +GR+V Sbjct: 181 KKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVV 217 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 94.7 bits (234), Expect = 5e-21 Identities = 79/237 (33%), Positives = 123/237 (51%), Gaps = 18/237 (7%) Query: 262 PALEIRELSVRNERGILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRI 321 P LE++ + V A+ G+SL V +GEI+ L G +G G+ L ++GLL +G I Sbjct: 5 PLLEVKSIDVYYGE-FQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSI 63 Query: 322 LLSGKDITHEPTRRKLDAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRPPFSRYGILRY 381 + G+DIT P ++++ G+ VPE R G+ +V ENL + R Sbjct: 64 IWQGRDITGLPAFKRVEEGISHVPEGR---GIFPRLTVYENLRVAASTR--------RAK 112 Query: 382 ETIYEHAETLMSQFDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLD 441 E + E + + F + AR ++ AG LSGG QQ IAR + + P +L++ +P+ GL Sbjct: 113 EHFQDSLEQVYTIFPILKARRSQL-AGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLA 171 Query: 442 ---VGAIEYIHRRIVEERDKGRAILLVSFDLDEILDLSDRIAVIYRGRIVAEVAAGE 495 + Y+ R+ EE G ILLV ++ L ++DR V+ GRIV E A+ E Sbjct: 172 PKLARDVIYLASRLREE--LGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDE 226 Score = 70.5 bits (171), Expect = 9e-14 Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 6/199 (3%) Query: 30 VTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRVRGREVQVSNPNVATSLGIG 89 V+LRV +G I ALLG NGAGK+T + + GL P +G I +GR++ GI Sbjct: 25 VSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIWQGRDITGLPAFKRVEEGIS 84 Query: 90 MVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVARISREYG-LEVDPDARIEDL 148 V + + TV EN+ + + RR E + + ++ + L+ L Sbjct: 85 HVPEGRGIFPRLTVYENLRVAASTRRAK----EHFQDSLEQVYTIFPILKARRSQLAGTL 140 Query: 149 SVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELMEIMRKLAGS-GKTIILITHKL 207 S G QQ + I + L + +L+ DEP+ L P+ +++ + +L G TI+L+ + Sbjct: 141 SGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLASRLREELGVTILLVEQNV 200 Query: 208 KEIKEVADECSVLRRGRLV 226 +VAD V+ GR+V Sbjct: 201 GLSLKVADRGYVMETGRIV 219 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 93.2 bits (230), Expect = 1e-20 Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 11/217 (5%) Query: 12 VEMMDIVKDFPGIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRVR 71 + + + K F A D V+L + +G I LLG +G GK+T + ++ G PD G + + Sbjct: 4 IRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIG 63 Query: 72 GREVQVSNPNVATSLGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVARI 131 R+V + P + MV Q++ L + V +NI G + R+ P +I + A + Sbjct: 64 SRDVTMLKPYERNT---AMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWAAEL 120 Query: 132 SREYGLEVDP--DARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQ-EIEELME 188 LE+D D LS G QQRV + + + + +L+ DEP + L ++ E Sbjct: 121 -----LEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREE 175 Query: 189 IMRKLAGSGKTIILITHKLKEIKEVADECSVLRRGRL 225 I+R G TI+ +TH +E ++ +V+ RGR+ Sbjct: 176 IVRLQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRV 212 Score = 65.5 bits (158), Expect = 3e-12 Identities = 63/214 (29%), Positives = 102/214 (47%), Gaps = 22/214 (10%) Query: 278 LAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRILLSGKDITH-EPTRRK 336 +A++ +SL + +GEI L G G G+ L +AG + GR+ + +D+T +P R Sbjct: 17 VALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIGSRDVTMLKPYER- 75 Query: 337 LDAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRP--PFSRYGILRYETIYEHAETLMSQ 394 + + F Q + L V +N+ YG R I+R + AE L + Sbjct: 76 -NTAMVF-----QNYALWPHMRVFDNIA---YGLKLRKLPRSEIVR--RVRWAAELL--E 122 Query: 395 FDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLDVGAIEYIHRRIVE 454 D R +LSGG QQ+ +AR + P VL++ +P LD + IV Sbjct: 123 IDHLLDRYPH----QLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVR 178 Query: 455 -ERDKGRAILLVSFDLDEILDLSDRIAVIYRGRI 487 ++ G I+ V+ D +E L +S R+AV+ RGR+ Sbjct: 179 LQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRV 212 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 92.8 bits (229), Expect = 2e-20 Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 5/212 (2%) Query: 16 DIVKDFPGIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRVRGREV 75 ++VKD+ G RA D V+ R+ G + +LLG NGAGK+T + +L L P SG + G + Sbjct: 11 ELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWIAGYSI 70 Query: 76 QVSNPNVATSLGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVARISREY 135 NV IG+V Q + +N+ + + R L AR++ + Sbjct: 71 VREPGNVRRV--IGLVPQDLTADDEMSGWDNVYIQA---RLYGLPSSEARERTREVLDYL 125 Query: 136 GLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELMEIMRKLAG 195 L R+ S G ++++EI L ++L DEPT L L + L Sbjct: 126 DLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLKR 185 Query: 196 SGKTIILITHKLKEIKEVADECSVLRRGRLVA 227 S TI+L TH ++E + ++D +++ RGR+VA Sbjct: 186 SAVTILLTTHYMEEAEMLSDRVAIIDRGRIVA 217 Score = 90.1 bits (222), Expect = 1e-19 Identities = 74/230 (32%), Positives = 112/230 (48%), Gaps = 14/230 (6%) Query: 261 SPALEIRELSVRNERGILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGR 320 S A+ + E V++ G AV+G+S + GE+ L G +G G+ + L+ LL SG Sbjct: 3 SEAMVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGE 62 Query: 321 ILLSGKDITHEPTRRKLDAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRPPFSRYGILR 380 ++G I EP + GL VP+D S +N+ I YG+ Sbjct: 63 AWIAGYSIVREPGNVRRVIGL--VPQDLTADD---EMSGWDNVYIQA------RLYGLPS 111 Query: 381 YETIYEHAETLMSQFDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGL 440 E E ++ D+ A R + SGG ++K IA + SP+VL + +PT GL Sbjct: 112 SEA-RERTREVLDYLDLMEAAHRRVAT--YSGGMRRKLEIAMSLVHSPKVLFLDEPTLGL 168 Query: 441 DVGAIEYIHRRIVEERDKGRAILLVSFDLDEILDLSDRIAVIYRGRIVAE 490 DV + + R I + + ILL + ++E LSDR+A+I RGRIVAE Sbjct: 169 DVHSRRSLWRYIEDLKRSAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAE 218 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 91.3 bits (225), Expect = 5e-20 Identities = 85/288 (29%), Positives = 133/288 (46%), Gaps = 27/288 (9%) Query: 9 DYVVEMMDIVKDFPG----IRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPD 64 D V + +VK + I A V+L V G + A++G +G+GK+TL+NI+ G+ P+ Sbjct: 8 DLAVVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPN 67 Query: 65 SGVIRVRGREVQVSNPNVATSLG---IGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDI 121 +G + V G EV + +G V Q L+ T ENI++ L Sbjct: 68 AGRVIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIPTLTALENILLPMA------LAG 121 Query: 122 ETARQKVARISREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQ 181 + R + + R GL E+LS G QQR+ + L D I++ DEPT L Sbjct: 122 KANRLRGQELLRRVGLGGKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIA 181 Query: 182 EIEELMEIMRKLAGS-GKTIILITHKLKEIKEVADECSVLRRGRLVATFPVSDVS----- 235 E ++ I+ + A S GKT++L TH + +AD +V+ GRL + S ++ Sbjct: 182 TGERIVRILLEEAHSRGKTVVLTTHD-PRVARMADRVAVIEDGRLRGVYSPSRIAGATGF 240 Query: 236 EEEMAELMVGREVSFKVEKDAPRPGSPALEIRELSVRNERGILAVEGL 283 E AE V V ++ DA R +RE R RG + ++ L Sbjct: 241 GEVEAEKAV-EAVMRRILDDAER------RLREAEDRFRRGEVGIDAL 281 Score = 80.1 bits (196), Expect = 1e-16 Identities = 68/223 (30%), Positives = 113/223 (50%), Gaps = 27/223 (12%) Query: 272 RNERGILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRILLSGKDITH- 330 R ER I+A+ +SL+V GE+L + G G+G+ LL +AG+ +GR+++ G +++ Sbjct: 23 RGER-IVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSA 81 Query: 331 --EPTRRKLDAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRPPFSRYGILRYETIYEHA 388 E RR +G+V Q+H LI + EN+++ P + G A Sbjct: 82 GGEELRRFRLERVGYV---FQQHNLIPTLTALENILL------PMALAG---------KA 123 Query: 389 ETLMSQFDVR---AARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLDVGAI 445 L Q +R R ELSGG QQ+ +A + P ++V +PT LD+ Sbjct: 124 NRLRGQELLRRVGLGGKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATG 183 Query: 446 EYIHRRIVEE-RDKGRAILLVSFDLDEILDLSDRIAVIYRGRI 487 E I R ++EE +G+ ++L + D + ++DR+AVI GR+ Sbjct: 184 ERIVRILLEEAHSRGKTVVLTTHD-PRVARMADRVAVIEDGRL 225 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 91.3 bits (225), Expect = 5e-20 Identities = 124/492 (25%), Positives = 203/492 (41%), Gaps = 87/492 (17%) Query: 35 REGTIHALLGENGAGKSTLMNILFGLHHPDSGVI------------RVRGREVQVSNPNV 82 REG + LLG NG GK+T + IL G P+ G + R RG E+Q Sbjct: 104 REGQVVGLLGRNGTGKTTALRILAGELKPNLGRVEGGEPEWDEILKRFRGSELQTYFRK- 162 Query: 83 ATSLGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVARISREYGLEVDPD 142 +V ++ H E + + R L R ++ + GL+ D Sbjct: 163 -------LVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGVALELAEQVGLDKVFD 215 Query: 143 ARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELMEIMRKLAGS---GKT 199 + LS G Q++ I+ +L RDA + IFDEP++ L +I E M + R +AG+ G Sbjct: 216 RDVRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYL---DIRERMRMARLIAGAARPGAY 272 Query: 200 IILITHKLKEIKEVADECSVL----------------RRG---RLVATFPVSDVSEEEMA 240 ++++ H L + V+D +L R G L P ++ + Sbjct: 273 VMVVEHDLAVLDYVSDLVHILYGEPGAYGIVSKPYSTREGINVFLQGYLPAENIRLRK-- 330 Query: 241 ELMVGREVSFKVEKDAPRPGSPALEIRELSVRNERGILAVEGLSLTVRE-----GEILGL 295 E ++ R+ + + + AP G A R + R +A++G +LT E GE++G+ Sbjct: 331 EPILFRKPAPEAQPAAPGGGRQASRRRIVGWTGLR--VALDGFTLTSGEGALYGGEVIGV 388 Query: 296 CGVDGNGQRELLYALAGLLPVESGRILLSGKD--ITHEPTRRKLDAGLGFVPEDRQRHGL 353 G +G G+ + LAG L G + +D ++++P ++ + Sbjct: 389 AGPNGIGKTTFVRTLAGALKPVEGAVYPYVEDLRVSYKPQ---------YISPESLPDAT 439 Query: 354 ILAFSVGENLVIHDYGRPPFSRYGILRYETIYEHAETLMSQFDVRAARGARTSAGELSGG 413 + N I G L E + + D R RT LSGG Sbjct: 440 VEQVLKAANPAILAPG-------SWLNLELVKR------MRLDKLLERRVRT----LSGG 482 Query: 414 NQQKAIIAREVHRSPRVLVVAQPTRGLDVG---AIEYIHRRIVEERDKGRAILLVSFDLD 470 QK +A + R V ++ +P+ LDV + RRIVE R+ A L+V DL Sbjct: 483 ELQKVAVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETRE--AAALVVEHDLM 540 Query: 471 EILDLSDRIAVI 482 + +SDRI ++ Sbjct: 541 ILDYVSDRIMLV 552 Score = 48.1 bits (113), Expect = 5e-07 Identities = 65/252 (25%), Positives = 109/252 (43%), Gaps = 37/252 (14%) Query: 23 GIR-ANDHVTLRVREGTIHA-----LLGENGAGKSTLMNILFGLHHPDSGVIRVRGREVQ 76 G+R A D TL EG ++ + G NG GK+T + L G P G + +++ Sbjct: 363 GLRVALDGFTLTSGEGALYGGEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYVEDLR 422 Query: 77 VS-NPNVAT--SLGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVARISR 133 VS P + SL V Q K + +A G +L++E V R+ Sbjct: 423 VSYKPQYISPESLPDATVEQVLKAANPAILAP----------GSWLNLEL----VKRMRL 468 Query: 134 EYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELMEIMRKL 193 + LE R+ LS G Q+V + L R+A + + DEP+A L +E + +R++ Sbjct: 469 DKLLE----RRVRTLSGGELQKVAVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRI 524 Query: 194 AGSGKTIILIT-HKLKEIKEVADECSVLR-----RGRLVATFPVSDVSEEEMAELMVGRE 247 + + L+ H L + V+D ++ RG + PV +E M L+ Sbjct: 525 VETREAAALVVEHDLMILDYVSDRIMLVTGEPGVRGHVDDPRPV----KEGMNLLLQNLG 580 Query: 248 VSFKVEKDAPRP 259 V+ + ++ RP Sbjct: 581 VTVRKDEQTGRP 592 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 90.5 bits (223), Expect = 9e-20 Identities = 64/222 (28%), Positives = 107/222 (48%), Gaps = 9/222 (4%) Query: 11 VVEMMDIVKDFPG-------IRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHP 63 ++E +VK F + A V+ V EG I++ LG NGAGK+T + IL L P Sbjct: 5 MIEARGLVKRFVSGRIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDP 64 Query: 64 DSGVIRVRGREVQVSNPNVATSLGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIET 123 D G RV G +V V +G+ M+ T EN+ P ++++ Sbjct: 65 DGGEARVAGFDVVKERWEVRKRIGV-MLSVERGFYWKLTGRENLYYFGRIYGIPQGELKS 123 Query: 124 ARQKVARISREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEI 183 ++V + L D E++S+G + R+ + ++L +D +LI DEPT L P Sbjct: 124 RIKEVLDLVGLTDLG-GADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASA 182 Query: 184 EELMEIMRKLAGSGKTIILITHKLKEIKEVADECSVLRRGRL 225 + ++R LA G+TI + TH + E + ++D ++ GR+ Sbjct: 183 RTIRGVIRSLASEGRTIFITTHNMVEAEMISDRVGIIIGGRI 224 Score = 70.9 bits (172), Expect = 7e-14 Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 30/232 (12%) Query: 275 RGILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRILLSGKDITHEPTR 334 R + A++G+S +V EGEI G +G G+ + L+ LL + G ++G D+ E Sbjct: 23 RVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAGFDVVKERW- 81 Query: 335 RKLDAGLGFVPEDRQRHGLILAFSVG--------ENLVIHDYGRPPFSRYGILRYETIYE 386 E R+R G++L+ G ENL + +GR YGI + E + Sbjct: 82 -----------EVRKRIGVMLSVERGFYWKLTGRENL--YYFGRI----YGIPQGE-LKS 123 Query: 387 HAETLMSQFDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLDVGAIE 446 + ++ + GA E+S G + + +AR + + P VL++ +PT GLD + Sbjct: 124 RIKEVLDLVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASAR 183 Query: 447 YIHRRIVEERDKGRAILLVSFDLDEILDLSDRIAVIYRGRIVAEVAAGETDE 498 I I +GR I + + ++ E +SDR+ +I GRI E G DE Sbjct: 184 TIRGVIRSLASEGRTIFITTHNMVEAEMISDRVGIIIGGRIAME---GTPDE 232 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 87.8 bits (216), Expect = 6e-19 Identities = 58/240 (24%), Positives = 117/240 (48%), Gaps = 9/240 (3%) Query: 9 DYVVEMMDIVKDFPGIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVI 68 D+++++ D+ + ++ V+L + G I ++G NGAGKSTL+ +FG G + Sbjct: 3 DWIIKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRV 62 Query: 69 RVRGREVQVSNPNVATSLGIGMVHQHFKLVHNFTVAENI-VMGSEPRRGPFLD-IETARQ 126 +V P+ +G+ + Q + TV EN+ + G + F D +E Sbjct: 63 LFENTDVTHMPPHDRAKIGMTFIFQLENIFRELTVYENLRLAGYDLPEDVFRDRLEEVFS 122 Query: 127 KVARISREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEEL 186 R+ G + LS G +Q + + + R ++ + DEPTA L+P+ +E+ Sbjct: 123 MFPRLKERLG------QKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEV 176 Query: 187 MEIMRKLAGSGKTIILITHKLKEIKEVADECSVLRRGRLVATFPVSD-VSEEEMAELMVG 245 + +R L G T++L+ +K E+ D+ ++ GR+ P + ++ +++A++ +G Sbjct: 177 LSYVRILNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDGPAEELLARKDLAKMYLG 236 Score = 76.3 bits (186), Expect = 2e-15 Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 13/213 (6%) Query: 283 LSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRILLSGKDITHEPTRRKLDAGLG 342 +SL + G I + G +G G+ LL + G V GR+L D+TH P + G+ Sbjct: 24 VSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLFENTDVTHMPPHDRAKIGMT 83 Query: 343 FVPEDRQRHGLILAFSVGENLVIHDYGRPPFSRYGILRYETIYEHAETLMSQFDVRAARG 402 F+ Q + +V ENL + Y P + + E + S F R Sbjct: 84 FI---FQLENIFRELTVYENLRLAGYDLPE---------DVFRDRLEEVFSMFP-RLKER 130 Query: 403 ARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLDVGAIEYIHRRIVEERDKGRAI 462 AG LSGG +Q +A + R P+V ++ +PT GL + + + +G + Sbjct: 131 LGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVRILNKEGYTV 190 Query: 463 LLVSFDLDEILDLSDRIAVIYRGRIVAEVAAGE 495 +LV ++ L++ D+ ++ GRI + A E Sbjct: 191 VLVEQNVKASLEIGDKGVLVVNGRIAFDGPAEE 223 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 86.7 bits (213), Expect = 1e-18 Identities = 71/230 (30%), Positives = 105/230 (45%), Gaps = 29/230 (12%) Query: 8 VDYVVEMMDIVKDFPGIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGV 67 +D V+E +VK + G D V L V G L+G NGAGK+TL+ + GL D G Sbjct: 1 MDTVLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGR 60 Query: 68 IRVRG----REVQVSNPNVATSLGIGMVHQHFKLVHNFTVAENI-----VMGSEPRRGPF 118 + + G RE + G+G+V + L + V E + ++GS P R Sbjct: 61 VLLNGLDPWREPRARE-------GVGVVFERPNLPSSMPVVEFLESAAAIIGSSPSR--- 110 Query: 119 LDIETARQKVARISREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVL 178 V R GLE LS G +QR I L + R L+ DEPT+ L Sbjct: 111 ---------VDWAIRAAGLEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNL 161 Query: 179 TPQEIEELMEIMRKL-AGSGKTIILITHKLKEIKEVADECSVLRRGRLVA 227 P E E++ ++ +L G ++++ +H + E+ VA VL GRL A Sbjct: 162 DPLERREVLRLLARLNREHGLSLLVSSHVIVELLRVATRIYVLAGGRLAA 211 Score = 66.2 bits (160), Expect = 2e-12 Identities = 67/223 (30%), Positives = 99/223 (44%), Gaps = 24/223 (10%) Query: 271 VRNERGILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRILLSGKDITH 330 V+ RG ++ + L V GE +GL G +G G+ L+ GL + GR+LL+G D Sbjct: 11 VKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLLNGLDPWR 70 Query: 331 EPTRRKLDAGLGFVPEDRQRHGLILAFSVGENL--VIHDYGRPPFSRYGILRYETIYEHA 388 EP R+ G+G V E R L + V E L G P +R + H Sbjct: 71 EPRARE---GVGVVFE---RPNLPSSMPVVEFLESAAAIIGSSPSRVDWAIRAAGLEGHE 124 Query: 389 ETLMSQFDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLDVGAIEYI 448 Q LS G +Q+A IA + PR LV +PT LD + Sbjct: 125 WKTFPQ---------------LSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREV 169 Query: 449 HRRIVE-ERDKGRAILLVSFDLDEILDLSDRIAVIYRGRIVAE 490 R + R+ G ++L+ S + E+L ++ RI V+ GR+ AE Sbjct: 170 LRLLARLNREHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAE 212 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 85.9 bits (211), Expect = 2e-18 Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 4/215 (1%) Query: 11 VVEMMDIVKDFPGIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRV 70 ++E+ +V + G + V + + G ++G +G+GKSTL+ + L PDSG I Sbjct: 4 LLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVF 63 Query: 71 RGREV-QVSNPNVA-TSLGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKV 128 RG +V ++S + IG + Q + L + TV NI E G L A ++ Sbjct: 64 RGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALG--LSRRDAEERA 121 Query: 129 ARISREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELME 188 + G+E LS G QQR + + L + IL+ DEPT+ L P+ +++E Sbjct: 122 VKYLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLE 181 Query: 189 IMRKLAGSGKTIILITHKLKEIKEVADECSVLRRG 223 + ++A GK +I++TH+ +VAD + + G Sbjct: 182 ALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDG 216 Score = 70.9 bits (172), Expect = 7e-14 Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 14/237 (5%) Query: 264 LEIRELSVRNERGILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRILL 323 LE+R L V + G ++G+ +++ GE L + G G+G+ LL A+ L+ +SG I+ Sbjct: 5 LEVRGLVV-SYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVF 63 Query: 324 SGKDITH--EPTRRKLDAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRPPFSRYGILRY 381 G D+T R + +G++P Q + L +V N+ P G+ R Sbjct: 64 RGVDVTRLSGSQLRMVRRKIGYLP---QSYSLFPHMTVLRNITY-----PLEKALGLSRR 115 Query: 382 ETIYEHAETLMSQFDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLD 441 + E A +S + A LSGG QQ+A +AR + P +L++ +PT LD Sbjct: 116 DA-EERAVKYLSMLGIEDL--AHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALD 172 Query: 442 VGAIEYIHRRIVEERDKGRAILLVSFDLDEILDLSDRIAVIYRGRIVAEVAAGETDE 498 + + + G+A+++V+ + D + ++DR+A + G + E E E Sbjct: 173 PESRADVLEALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSELVE 229 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 84.3 bits (207), Expect = 6e-18 Identities = 75/240 (31%), Positives = 115/240 (47%), Gaps = 21/240 (8%) Query: 262 PALEIRELSVRNERGILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGR- 320 P L + + + IL ++ LSL+V +G I L G +G G+ LL A++G++ E GR Sbjct: 3 PLLNVSNVEIMYHPFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRV 62 Query: 321 ----ILLSGKDITHEPTRRKLDAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRPPFSRY 376 I L G+DIT+ G+ +V E R+ + + ENLV Y Sbjct: 63 TRGSIQLEGEDITNREPDEIARRGVIYVMEGRR---IFKELTTEENLVSVAYAA------ 113 Query: 377 GILRYETIYEHAETLMSQFDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQP 436 G R + +++S F R AG LSGG QQ IA + P++L++ +P Sbjct: 114 GASR-----DDIRSVLSYFP-RLKERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEP 167 Query: 437 TRGLDVGAIEYIHRRI-VEERDKGRAILLVSFDLDEILDLSDRIAVIYRGRIVAEVAAGE 495 + GL I+ I + R++G ILL + + L++SD VI GRIV E +A E Sbjct: 168 SLGLAPKITSQIYATIKMLHREEGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEE 227 Score = 72.4 bits (176), Expect = 2e-14 Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 13/231 (5%) Query: 22 PGIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGL-----HHPDSGVIRVRGREVQ 76 P I +++L V +G+I L+G NGAGK+TL+ + G+ G I++ G ++ Sbjct: 16 PFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDIT 75 Query: 77 VSNPNVATSLGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVARISREYG 136 P+ G+ V + ++ T EN+V + DI + R+ G Sbjct: 76 NREPDEIARRGVIYVMEGRRIFKELTTEENLVSVAYAAGASRDDIRSVLSYFPRLKERLG 135 Query: 137 LEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELMEIMRKL-AG 195 + +LS G QQ + I L ++L+ DEP+ L P+ ++ ++ L Sbjct: 136 ------EKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHRE 189 Query: 196 SGKTIILITHKLKEIKEVADECSVLRRGRLVATFPVSDVS-EEEMAELMVG 245 G TI+L ++ E++D V+ GR+V ++ ++++AE +G Sbjct: 190 EGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEELRLDKDVAEFYLG 240 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 83.6 bits (205), Expect = 1e-17 Identities = 63/216 (29%), Positives = 107/216 (49%), Gaps = 13/216 (6%) Query: 12 VEMMDIVKDFPGIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRVR 71 V++ + K F + A V L + + ++LG +G+GK+TL+ ++ G++ P G I Sbjct: 4 VKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFN 63 Query: 72 GREVQVSNPNVATSLGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVARI 131 +V PN IG+V Q++ L + TV ENI P R ++KV + Sbjct: 64 DVDVTDLPPN---KRNIGLVFQNYALYPHMTVYENIAF---PLRLRNFGEPAIKEKVLSV 117 Query: 132 SREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEP----TAVLTPQEIEELM 187 ++ G+E D LS G QQRV + + L ++ +L+ DEP A+L + EL Sbjct: 118 AKLLGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELK 177 Query: 188 EIMRKLAGSGKTIILITHKLKEIKEVADECSVLRRG 223 ++ ++L G T I +TH E +AD +++ G Sbjct: 178 KLQKEL---GITAIYVTHDQSEALAMADRIAIIASG 210 Score = 73.6 bits (179), Expect = 1e-14 Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 26/217 (11%) Query: 277 ILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRILLSGKDITHEPTRRK 336 ++AV ++L + + E + + G G+G+ LLY +AG+ GRI + D+T P ++ Sbjct: 16 VVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFNDVDVTDLPPNKR 75 Query: 337 LDAGLGFVPEDRQRHGLILAFSVGENLV----IHDYGRPPFSRYGILRYETIYEHAETLM 392 + GL F Q + L +V EN+ + ++G P E ++ Sbjct: 76 -NIGLVF-----QNYALYPHMTVYENIAFPLRLRNFGEPAIK--------------EKVL 115 Query: 393 SQFDVRAARGARTS-AGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLDVGAIEYIHRR 451 S + G +LSGG QQ+ +AR + + P VL++ +P LD I Sbjct: 116 SVAKLLGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSE 175 Query: 452 IVE-ERDKGRAILLVSFDLDEILDLSDRIAVIYRGRI 487 + + +++ G + V+ D E L ++DRIA+I G I Sbjct: 176 LKKLQKELGITAIYVTHDQSEALAMADRIAIIASGVI 212 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 83.2 bits (204), Expect = 1e-17 Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 12/238 (5%) Query: 10 YVVEMMDIVKDFPGIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIR 69 Y + + K G V+L V+ G IH L G NGAGK+T + +L GL DSG R Sbjct: 13 YAACLCGVAKSVKGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEAR 72 Query: 70 VRGREVQVSNPNVATSLG-IGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKV 128 V G V G +G + + + T ENI+ + G + D+E + Sbjct: 73 VLG--VDPWGGGFERVKGEVGYLPEDASVYERLTGMENILFYARLYSG-WRDVEELVENA 129 Query: 129 ---ARISREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEE 185 + +SRE D R S G ++R+ + L R+++ DEPT+ + P Sbjct: 130 VFYSGLSRE-----DLARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNR 184 Query: 186 LMEIMRKLAGSGKTIILITHKLKEIKEVADECSVLRRGRLVATFPVSDVSEEEMAELM 243 + +I+R L+ G+ I++ TH L +E+AD +++ G VA+ P + EE E + Sbjct: 185 IKKILRGLSREGRAILVTTHDLALAEEIADRVTIIHGGSTVASGPPYRLVEEYCGETL 242 Score = 68.2 bits (165), Expect = 5e-13 Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 21/244 (8%) Query: 272 RNERGILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRILLSGKDITHE 331 ++ +G + G+SL+V+ GEI L G++G G+ L L GLL +SG + G D Sbjct: 22 KSVKGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPWGG 81 Query: 332 PTRRKLDAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRPPFSRYGILRYETIYEHAETL 391 R + +G++PED + + EN++ Y R G E + E+A Sbjct: 82 GFER-VKGEVGYLPEDASVYERLTGM---ENILF--YAR---LYSGWRDVEELVENAVFY 132 Query: 392 MSQFDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLDVGAIEYIHRR 451 AR AG S G +++ ++ + PR++V+ +PT G+D A I + Sbjct: 133 SGLSREDLAR----RAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKI 188 Query: 452 IVEERDKGRAILLVSFDLDEILDLSDRIAVIYRGRIVA--------EVAAGETDENELGL 503 + +GRAIL+ + DL +++DR+ +I+ G VA E GET E+ Sbjct: 189 LRGLSREGRAILVTTHDLALAEEIADRVTIIHGGSTVASGPPYRLVEEYCGETLEDAFVN 248 Query: 504 LMAG 507 ++ G Sbjct: 249 IVTG 252 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 83.2 bits (204), Expect = 1e-17 Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 17/229 (7%) Query: 12 VEMMDIVKDFPGIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRVR 71 V + IVK F A + L +++G LLG +G GK+T + I+ GL PD+G + Sbjct: 4 VRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFD 63 Query: 72 GREVQVSNPNVATSLGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVARI 131 GR+V P + MV Q + L + V +NI + ++ P +I + A + Sbjct: 64 GRDVTGLPPK---DRNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAAEL 120 Query: 132 SREYGLEVDP--DARIEDLSVGSQQRVEILKMLYRDARILIFDEP----TAVLTPQEIEE 185 LE+D D LS G QQRV + + + + +L+ DEP A+L + E Sbjct: 121 -----LEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSE 175 Query: 186 LMEIMRKLAGSGKTIILITHKLKEIKEVADECSVLRRGRLVATFPVSDV 234 + ++ R+L G T+I +TH E + D V+ G + SDV Sbjct: 176 IKKLQRRL---GVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDV 221 Score = 64.7 bits (156), Expect = 5e-12 Identities = 57/214 (26%), Positives = 100/214 (46%), Gaps = 22/214 (10%) Query: 278 LAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRILLSGKDITHEPTRRKL 337 +A++G+ L +++GE + L G G G+ L +AGL ++GR+ G+D+T Sbjct: 17 VALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFDGRDVT-------- 68 Query: 338 DAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRPPFSRYGILRYETIYE---HAETLMSQ 394 G P+DR + ++++ ++ + D P + R E + AE L + Sbjct: 69 ----GLPPKDRNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAAELL--E 122 Query: 395 FDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLDVGAIEYIHRRIVE 454 D R +LSGG QQ+ +AR + P VL++ +P LD + I + Sbjct: 123 IDHLLDRYPH----QLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKK 178 Query: 455 -ERDKGRAILLVSFDLDEILDLSDRIAVIYRGRI 487 +R G ++ V+ D E + + DRI V+ G I Sbjct: 179 LQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEI 212 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 83.2 bits (204), Expect = 1e-17 Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 30/229 (13%) Query: 275 RGIL-AVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLP----VESGRILLSGKDIT 329 RGI+ AV+G+S T+R GE+LG+ G G+G+ L +++ GL+P + GRI++ G D+T Sbjct: 19 RGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVT 78 Query: 330 ---HEPTRRKLDAGLGFVPEDRQRHGLILAFSVG----ENLVIHDYGRPPFSRYGILRYE 382 RRK+ + + L ++VG E L IH G+ R+E Sbjct: 79 SMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIH---------RGVGRHE 129 Query: 383 T---IYEHAETLMSQFDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRG 439 +YE E++ + A ELSGG +Q+ +IA + P +++ +PT Sbjct: 130 ARQRVYELLESVGLHRSI-----ADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTA 184 Query: 440 LDVGAIEYIHRRIVE-ERDKGRAILLVSFDLDEILDLSDRIAVIYRGRI 487 LDV I + + +K +I+L++ DL I +L++ + ++Y G+I Sbjct: 185 LDVVVQAQILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGKI 233 Score = 73.2 bits (178), Expect = 1e-14 Identities = 74/256 (28%), Positives = 117/256 (45%), Gaps = 19/256 (7%) Query: 24 IRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPD----SGVIRVRGREV-QVS 78 ++A D V+ +R G + + GE+G+GKSTL + GL P G I + G +V +S Sbjct: 22 VKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTSMS 81 Query: 79 NPNVATSLGIGMVHQHFKLVHN-----FTVAENIVMGSEPRRGPFLDIETARQKVARISR 133 + + V F+ N +TV I + RG + ARQ+V + Sbjct: 82 EAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRG--VGRHEARQRVYELLE 139 Query: 134 EYGLEVD-PDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELMEIMRK 192 GL D +LS G +QRV I L + I+I DEPT L +++ +++K Sbjct: 140 SVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLKK 199 Query: 193 LA-GSGKTIILITHKLKEIKEVADECSVLRRGRLVATFPVSDVSEE-----EMAELMVGR 246 LA +IILITH L I E+A+ ++ G++ P V + A L Sbjct: 200 LAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEYGPSDAVFTKPQHPYTQALLKAIP 259 Query: 247 EVSFKVEKDAPRPGSP 262 ++ +++ A PGSP Sbjct: 260 KLRGPIDRLAYIPGSP 275 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 82.4 bits (202), Expect = 2e-17 Identities = 75/284 (26%), Positives = 123/284 (43%), Gaps = 25/284 (8%) Query: 11 VVEMMDIVKDFPGIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRV 70 V+E+ +VK + + A V+ V G + LG NGAGK+T + +L G P SG RV Sbjct: 4 VIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARV 63 Query: 71 RGREVQVSNPNVA-TSLGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVA 129 G V++ NP + +G V F+ + + G +R V Sbjct: 64 FG--VELYNPGASGVRRRVGYVPGEFEFYGGVSGGRMLDYWCRLVGG------CSRGVVR 115 Query: 130 RISREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELMEI 189 + + L ++ + S G +Q + ++ + +++ DEPT L P +++ Sbjct: 116 ELLEAFPLPLE--RAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDF 173 Query: 190 MRKLAGSGKTIILITHKLKEIKEVADECSVLRRGRLVATFPVSDVSEEEMAELMVGREVS 249 +R A G T+ +H L E++ VAD +LR G LVA VS + + G+ V Sbjct: 174 VRSKAREGVTVFFSSHVLSEVQRVADRVGLLRSGVLVALEDVSSLLRKS------GKVVK 227 Query: 250 FKVEKDAPRPGSPALEIRELSVRNERGILAVEGLSLTVREGEIL 293 +V K+ L L+V R I + L L V G+ L Sbjct: 228 ARVSKN--------LSPDRLAVDGVRVIRSNGELELVVTSGKAL 263 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 77.4 bits (189), Expect = 8e-16 Identities = 65/227 (28%), Positives = 108/227 (47%), Gaps = 11/227 (4%) Query: 266 IRELSVRNERGILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRILLSG 325 ++ + R + + AV+G+ L +REGE+L + G G G+ L A+ G+ G I G Sbjct: 24 LKRILGRPDAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRG 83 Query: 326 KDIT-HEPTR-RKLDAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRPPFSRYGILRYET 383 + +T H R R+L L V +D + S+ + + D P +G+ R E Sbjct: 84 ELLTPHRLARDRRLRRKLQMVFQDPYK-------SLDPLMPVGDQVAEPLVIHGLARGEE 136 Query: 384 IYEHAETLMSQFDVRAARGAR-TSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLDV 442 A ++ + R +LSGG +Q+ IAR + P V+V +P +DV Sbjct: 137 ARRRAVEMLETVGLTPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDV 196 Query: 443 GAIEYIHRRIVE-ERDKGRAILLVSFDLDEILDLSDRIAVIYRGRIV 488 I I++ R G I+L++ D+ ++DRIAV+Y G+IV Sbjct: 197 SMRASILDLIMDYHRRTGATIVLITHDIAVARAVADRIAVMYLGKIV 243 Score = 74.3 bits (181), Expect = 6e-15 Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 18/215 (8%) Query: 24 IRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRVRGREVQVSNPNVA 83 +RA D V L +REG + A++GE+G GK+TL + G+ P G I RG + Sbjct: 35 VRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARD 94 Query: 84 TSLG--IGMVHQH-FKLVHNFT-----VAENIVMGSEPRRGPFLDIETARQKVARISREY 135 L + MV Q +K + VAE +V+ R E AR++ + Sbjct: 95 RRLRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARG------EEARRRAVEMLETV 148 Query: 136 GLEVDPD---ARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELME-IMR 191 GL + + LS G +QRV I + L + +++ DEP +++ +++ IM Sbjct: 149 GLTPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMD 208 Query: 192 KLAGSGKTIILITHKLKEIKEVADECSVLRRGRLV 226 +G TI+LITH + + VAD +V+ G++V Sbjct: 209 YHRRTGATIVLITHDIAVARAVADRIAVMYLGKIV 243 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 76.6 bits (187), Expect = 1e-15 Identities = 64/217 (29%), Positives = 102/217 (47%), Gaps = 7/217 (3%) Query: 12 VEMMDIVKDFPGIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRVR 71 VE + K F G A V+ V +G ++G NG+GK+TL+ ++ G+ P G +RV Sbjct: 5 VEARGLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVC 64 Query: 72 GREVQVSNPNVATSLGIGMVHQHFKLVHNFTVAENI-VMGSEPRRGPFLDIETARQKVAR 130 G +V A L IG Q + T AE I V+G P AR++ R Sbjct: 65 GYDVWGDGWREARGL-IGFAPQDPPMARRMTGAEYITVVGGLLGLSP----GVARREARR 119 Query: 131 ISREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELMEIM 190 + G E + LS G ++ + I L + +++ DEP + L + E L + Sbjct: 120 VLEMLGFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASL 179 Query: 191 RKLAGSGKTIILITHKLKEIKEVADECSVLRRGRLVA 227 RK A G+T++ +H +E + +D ++ RGRL A Sbjct: 180 RK-AFKGRTVLFSSHDPQEAEAESDRVLIMHRGRLAA 215 Score = 70.1 bits (170), Expect = 1e-13 Identities = 67/218 (30%), Positives = 103/218 (47%), Gaps = 22/218 (10%) Query: 276 GILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRILLSGKDITHEPTRR 335 G AV G+S +V +GE + G +G+G+ LL ++G+L G + + G D+ + R Sbjct: 16 GRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVCGYDVWGDGWRE 75 Query: 336 KLDAGLGFVPED----RQRHGLILAFSVGENLVIHDYGRPPFSRYGILRYETIYEHAETL 391 +GF P+D R+ G VG L G P G+ R E + Sbjct: 76 ARGL-IGFAPQDPPMARRMTGAEYITVVGGLL-----GLSP----GVARREA--RRVLEM 123 Query: 392 MSQFDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLDVGAIEYIHRR 451 + DV AR LSGG ++ IA + +P V+V+ +P GLDV A E + Sbjct: 124 LGFEDVLGRVVAR-----LSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWAS 178 Query: 452 IVEERDKGRAILLVSFDLDEILDLSDRIAVIYRGRIVA 489 + + KGR +L S D E SDR+ +++RGR+ A Sbjct: 179 L-RKAFKGRTVLFSSHDPQEAEAESDRVLIMHRGRLAA 215 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 76.6 bits (187), Expect = 1e-15 Identities = 67/230 (29%), Positives = 106/230 (46%), Gaps = 16/230 (6%) Query: 12 VEMMDIVKDFPGIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRVR 71 V + ++ + + A V+ E +I A+LG +G GK+T++ ++ GL P G + Sbjct: 6 VRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFG 65 Query: 72 GREVQVSNPNVATSLGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVARI 131 G + P +G V Q L + TV +N+ G R F E RQ V Sbjct: 66 GVDYTGLPPE---RRSVGFVFQDLALFPHMTVYDNVAFGLRAR--GFSGGEVRRQ-VEWA 119 Query: 132 SREYGLEVDPD---ARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVL----TPQEIE 184 GL + R+ LS G QQRV + + + + +L+ DEP + L + + Sbjct: 120 LETVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLA 179 Query: 185 ELMEIMRKLAGSGKTIILITHKLKEIKEVADECSVLRRGRLVATFPVSDV 234 EL + RKL G T+I +TH E E+AD ++R GR+V S+V Sbjct: 180 ELKRLQRKL---GSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEV 226 Score = 68.9 bits (167), Expect = 3e-13 Identities = 68/231 (29%), Positives = 107/231 (46%), Gaps = 22/231 (9%) Query: 264 LEIRELSVRNERG-ILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRIL 322 +E+R +V G + A+ G+S + E I + G G G+ +L +AGLL GR+ Sbjct: 4 VEVRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVF 63 Query: 323 LSGKDITHEPTRRKLDAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRPPFSRYGILRYE 382 G D T P R+ +GFV +D L +V +N+ R FS + R Sbjct: 64 FGGVDYTGLPPERR---SVGFVFQDL---ALFPHMTVYDNVAFGLRAR-GFSGGEVRRQ- 115 Query: 383 TIYEHAETLMSQFDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLDV 442 E A + R G R + LSGG QQ+ +AR + P VL++ +P LD Sbjct: 116 --VEWALETVGLTPPREFMGRRVTG--LSGGQQQRVALARAIAYEPPVLLLDEPLSHLDF 171 Query: 443 GAIEYIHRRIVEE-----RDKGRAILLVSFDLDEILDLSDRIAVIYRGRIV 488 I +R++ E R G ++ V+ D E ++L+D + ++ GRIV Sbjct: 172 ----KIRQRLLAELKRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIV 218 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 76.3 bits (186), Expect = 2e-15 Identities = 72/249 (28%), Positives = 113/249 (45%), Gaps = 44/249 (17%) Query: 264 LEIRELSVR--NERGIL-AVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLP----V 316 L+I++L V GI+ AV+G+SL+V +GE + + G G+G+ L ++ L+ + Sbjct: 4 LDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRI 63 Query: 317 ESGRILLSGKDITH---EPTRRKLDAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRPPF 373 GRIL SG D+ E RR +G V +D + P+ Sbjct: 64 VGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAY------------------LDPY 105 Query: 374 SRYGILRYETIYEHAETLMSQFDVRAARGARTSAG-----------ELSGGNQQKAIIAR 422 G E++ EH A A G +LSGG +Q+ IA Sbjct: 106 RTVGSQIAESLLEHGLASSGSEAESMAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAA 165 Query: 423 EVHRSPRVLVVAQPTRGLDV---GAIEYIHRRIVEERDKGRAILLVSFDLDEILDLSDRI 479 V P++L+ +PT LDV I + +++ EER G ++LV+ D+ + SDRI Sbjct: 166 AVALEPKILIADEPTTALDVVVQAKIMDLMKKLQEER--GLTVMLVTHDIGLAAEYSDRI 223 Query: 480 AVIYRGRIV 488 AV+Y G +V Sbjct: 224 AVMYAGELV 232 Score = 67.0 bits (162), Expect = 1e-12 Identities = 70/256 (27%), Positives = 112/256 (43%), Gaps = 20/256 (7%) Query: 24 IRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRVRGREVQVSNPNVA 83 +RA D V+L V +G +++GE+G+GKSTL + L P R+ G + S ++ Sbjct: 20 VRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPG---RIVGGRILYSGVDLL 76 Query: 84 TSLG----------IGMVHQH-FKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVARIS 132 + G IGMV Q + + + + S G A Sbjct: 77 SLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLASSGSEAESMAGDAL 136 Query: 133 REYGLEVD-PDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELMEIMR 191 G+ D LS G +QRV I + + +ILI DEPT L ++M++M+ Sbjct: 137 ELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKIMDLMK 196 Query: 192 KLAGS-GKTIILITHKLKEIKEVADECSVLRRGRLVATFPVSDVSEEEM---AELMVGRE 247 KL G T++L+TH + E +D +V+ G LV P DV + E+++ Sbjct: 197 KLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDVVSNPIHPYTEMLIKSV 256 Query: 248 VSFKVEKDA-PRPGSP 262 +++ P PGSP Sbjct: 257 PDPWEDREVKPIPGSP 272 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 75.1 bits (183), Expect = 4e-15 Identities = 57/188 (30%), Positives = 99/188 (52%), Gaps = 6/188 (3%) Query: 39 IHALLGENGAGKSTLMNILFGLHHPDSGVIRVRGREVQVSNPNVATSLG-IGMVHQHFKL 97 I +LG NGAGK+TL+ + GL P +G I V G V +P L IG V + + Sbjct: 31 ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVEG--VNPRSPGFEKLLPRIGYVPE-LPV 87 Query: 98 VHNFTVAENIVMGSEPRRGPFLDIETARQKVARISREYGLEVDPDARIEDLSVGSQQRVE 157 V +T I++ + R + +E AR + GL + + I LS G+++RV Sbjct: 88 VPLWTTP-CILLETLARLEGYTSVE-ARVRAREALEVVGLAGECETPIGKLSKGARKRVL 145 Query: 158 ILKMLYRDARILIFDEPTAVLTPQEIEELMEIMRKLAGSGKTIILITHKLKEIKEVADEC 217 + + + +L+ DEP + L P+ + + E++R +A G T+I+ +H L+E++++A Sbjct: 146 VAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAREGATVIVSSHILRELEDIATHV 205 Query: 218 SVLRRGRL 225 VL+ +L Sbjct: 206 LVLKTDQL 213 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 73.9 bits (180), Expect = 8e-15 Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 9/207 (4%) Query: 30 VTLRVREGTIHALLGENGAGKSTLMNILFG--LHHPDSGVIRVRGREVQVSNPNVATSLG 87 V ++ G +HA++G NG+GKS+L ++ G ++ G I + G ++ P G Sbjct: 21 VDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDILLDGESIKELPPEERALKG 80 Query: 88 IGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVARISREYGLEVDPDARIED 147 I M Q + ++ I+ R G + A K+ + EY ++ D I + Sbjct: 81 IFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKIVKRMYEYATKLGLDREILN 140 Query: 148 LSV------GSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELMEIMRKLAGSGKTII 201 V G ++R E+L+ + D +I+I DEP + L ++ + E +++L SG+ ++ Sbjct: 141 REVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGLKIVAEFIKQLRDSGRGVM 200 Query: 202 LITHKLKEIKEV-ADECSVLRRGRLVA 227 LITH + + V D +VL RG ++A Sbjct: 201 LITHYARLLNFVEPDRVTVLYRGSVLA 227 Score = 70.1 bits (170), Expect = 1e-13 Identities = 58/240 (24%), Positives = 116/240 (48%), Gaps = 21/240 (8%) Query: 264 LEIRELSVRNERGILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAG--LLPVESGRI 321 LE++ L+ + ++ + + ++ GE+ + G +G+G+ L Y + G + V G I Sbjct: 3 LEVKGLTAKIGEKVV-LNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDI 61 Query: 322 LLSGKDITHEPTRRKLDAGLGFVPEDRQR------HGLILAFSVGENLVIHDYGRPPFSR 375 LL G+ I P + G+ +D + LI+AF V + L D +P + Sbjct: 62 LLDGESIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAF-VNKRLGAQDLSKPADPK 120 Query: 376 YGILRYETIYEHAETLMSQFDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQ 435 + +YE+A L R + G SGG ++++ + + + P+++++ + Sbjct: 121 I----VKRMYEYATKLGLD---REILNREVNVG-FSGGEKKRSELLQAMIFDPKIVILDE 172 Query: 436 PTRGLDVGAIEYIHRRIVEERDKGRAILLVSFDLDEILDL--SDRIAVIYRGRIVAEVAA 493 P GLD+ ++ + I + RD GR ++L++ +L+ DR+ V+YRG ++A A Sbjct: 173 PDSGLDIDGLKIVAEFIKQLRDSGRGVMLIT-HYARLLNFVEPDRVTVLYRGSVLARGGA 231 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 72.8 bits (177), Expect = 2e-14 Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 20/228 (8%) Query: 4 GEPSVDYVVEMMDIVKDFPGIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHP 63 G+P+V E + K G V+L V G+++ ++G NGAGK+TL L GL+ Sbjct: 5 GQPAV----EAEGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRA 60 Query: 64 DSGVIRVRGREVQVSNPNVATSLGI----GMVHQHFKLVHNFTVAENIVMGSEPRRGPFL 119 D G + + G V+ + ++ + G +++ H F + G E Sbjct: 61 DRGRVALLGEPVERAGGSLFRRVAYLPEDGEPYRNM-TGHEFLRLYASIYGVE------- 112 Query: 120 DIETARQKVARISREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLT 179 D+E ++ +R+S GL R+ S G ++R+ + ML + + DEPTA L Sbjct: 113 DLEGYLEEASRLS---GLGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLD 169 Query: 180 PQEIEELMEIMRKLA-GSGKTIILITHKLKEIKEVADECSVLRRGRLV 226 P + ++++ + G T++L +H + E++ V E +++ GR+V Sbjct: 170 PVYSVGIRRLLKEYSERHGVTVLLSSHNMYEVESVCSEITMISSGRIV 217 Score = 71.6 bits (174), Expect = 4e-14 Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 18/237 (7%) Query: 260 GSPALEIRELSVRNERGILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESG 319 G PA+E + R G ++ +SLTV G + G+ G +G G+ L L GL + G Sbjct: 5 GQPAVEAEGVWKRLG-GRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRG 63 Query: 320 RILLSGKDITHEPTRRKLDAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRPPFSRYGIL 379 R+ L G+ + E L + ++PED + + N+ H++ R S YG+ Sbjct: 64 RVALLGEPV--ERAGGSLFRRVAYLPEDGEPY---------RNMTGHEFLRLYASIYGVE 112 Query: 380 RYETIYEHAETLMSQFDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRG 439 E E A L S R R+ S G +++ ++A + P + V+ +PT G Sbjct: 113 DLEGYLEEASRL-SGLGGRLGERVRS----YSKGMRRRLLVAAMLALKPSLAVLDEPTAG 167 Query: 440 LDVGAIEYIHRRIVEERDK-GRAILLVSFDLDEILDLSDRIAVIYRGRIVAEVAAGE 495 LD I R + E ++ G +LL S ++ E+ + I +I GRIV + GE Sbjct: 168 LDPVYSVGIRRLLKEYSERHGVTVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGE 224 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 70.9 bits (172), Expect = 7e-14 Identities = 73/263 (27%), Positives = 113/263 (42%), Gaps = 23/263 (8%) Query: 256 APRPGSPALEIRELSVR--NERGIL-AVEGLSLTVREGEILGLCGVDGNGQRELLYALAG 312 AP P +E+ L V GI+ A+E +S + GE L G G G+ AL Sbjct: 2 APAECDPIIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTR 61 Query: 313 LLPVESGRILLSGKDITHEPTRRKLDAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRPP 372 L+ GRI+ GK + R++D E R+ G +A+ + D P Sbjct: 62 LI-YPPGRIV-EGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALD----P 115 Query: 373 FSRYGILRYETIYEHAETLMSQFDVRAARGA-------------RTSAGELSGGNQQKAI 419 G ET+ H + VR A G ++ ELSGG +Q+ + Sbjct: 116 LYTIGYQVGETMLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGV 175 Query: 420 IAREVHRSPRVLVVAQPTRGLDVGAIEYIHRRIVE-ERDKGRAILLVSFDLDEILDLSDR 478 I + P++L+ +PT LDV I + + +R+ G +LL++ +L + + DR Sbjct: 176 IGISLSNRPKLLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDR 235 Query: 479 IAVIYRGRIVAEVAAGETDENEL 501 +AV+Y G IV E E N L Sbjct: 236 VAVMYAGNIVEEAPVDELFSNPL 258 Score = 58.5 bits (140), Expect = 4e-10 Identities = 60/232 (25%), Positives = 99/232 (42%), Gaps = 25/232 (10%) Query: 24 IRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRVRGREVQVSNPNVA 83 ++A + V+ R+ G + L+GE G GKS L L +P + V G+ P Sbjct: 26 VKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGRI--VEGKIYYYPEPGRR 83 Query: 84 TSLGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDI-----ET------ARQKVARIS 132 + + + + + + +A I P I ET R + Sbjct: 84 VDI-MSLDEKELRRIRGEEIAY-IFQDPSAALDPLYTIGYQVGETMLAHGRVRSLREGVR 141 Query: 133 REYG-----LEVDPDARIE----DLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEI 183 R G L DP+ R++ +LS G +QR I L ++LI DEPT L Sbjct: 142 RAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLIADEPTTALDVTIQ 201 Query: 184 EELMEIMRKLAGS-GKTIILITHKLKEIKEVADECSVLRRGRLVATFPVSDV 234 ++M+++ +L G T++LITH L + E D +V+ G +V PV ++ Sbjct: 202 AQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEEAPVDEL 253 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 69.7 bits (169), Expect = 2e-13 Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 27/238 (11%) Query: 30 VTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRVRGREVQVSNPNVATS---- 85 ++ + + GT+ A++G +G+GKSTL+ ++ L G RV G EV ++N NV Sbjct: 24 ISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGA-RVEG-EVWINNMNVMKEDPYN 81 Query: 86 --LGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVARISREYGLEV---- 139 GMV Q + T+ EN+ +G P L +K E+ L++ Sbjct: 82 IRRYTGMVFQEPNPFPHMTIYENVAIG------PKLHGLAKNKKELDEIVEWALKMAHLW 135 Query: 140 -DPDARIED----LSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEEL-MEIMRKL 193 + R+ D LS G +QR+ + + L R+L+ DEPTA + P ++ I+ Sbjct: 136 DEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYA 195 Query: 194 AGSGKTIILITHKLKEIKEVADECSVLRRGRLVATFPVSDV---SEEEMAELMVGREV 248 T+I++TH ++ ++D+ L GR++ P ++ E+ + +G EV Sbjct: 196 KEEMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELVLRPRHELTKKFLGGEV 253 Score = 50.4 bits (119), Expect = 1e-07 Identities = 48/220 (21%), Positives = 101/220 (45%), Gaps = 23/220 (10%) Query: 280 VEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPV-----ESGRILLSGKDITHE-PT 333 ++G+S + G + + G G+G+ L+ + L+ + G + ++ ++ E P Sbjct: 21 LKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVMKEDPY 80 Query: 334 RRKLDAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRPPFSRYGILR----YETIYEHAE 389 + G+ F + H ++ EN+ I +G+ + + I E A Sbjct: 81 NIRRYTGMVFQEPNPFPH-----MTIYENVAIGP------KLHGLAKNKKELDEIVEWAL 129 Query: 390 TLMSQFDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLDVGAIEYIH 449 + +D R +LSGG +Q+ +AR + PRVL++ +PT +D + I Sbjct: 130 KMAHLWDEVKDR-LSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIE 188 Query: 450 RRIVE-ERDKGRAILLVSFDLDEILDLSDRIAVIYRGRIV 488 + IVE +++ +++V+ + +SD+I +Y GR++ Sbjct: 189 QSIVEYAKEEMATVIIVTHTPQQAARISDQILFLYEGRVI 228 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 66.6 bits (161), Expect = 1e-12 Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 40/247 (16%) Query: 24 IRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRV------------- 70 ++A D V+L +++G I ++GE+G+GK+TL + GLH P +G + + Sbjct: 27 VKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELEEAVSI 86 Query: 71 -----RGREVQVSNPNVATSL-------------------GIGMVHQHFKLVHNFTVAEN 106 RG VQ + + + MV Q N + Sbjct: 87 YEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMKVG 146 Query: 107 IVMGSEPR-RGPFLDIETARQKVARISREYGLEVD-PDARIEDLSVGSQQRVEILKMLYR 164 ++G R G E +++V + GL + D +LS G +QRV I + L Sbjct: 147 EIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIARALAL 206 Query: 165 DARILIFDEPTAVLTPQEIEELMEIMRKL-AGSGKTIILITHKLKEIKEVADECSVLRRG 223 + +IL+ DEPT+ L +++ ++R+L G T +LITH + ++ ++ V+ G Sbjct: 207 NPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMYSG 266 Query: 224 RLVATFP 230 +++ + P Sbjct: 267 KIMESAP 273 Score = 65.1 bits (157), Expect = 4e-12 Identities = 68/257 (26%), Positives = 115/257 (44%), Gaps = 59/257 (22%) Query: 277 ILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGL---------LPVESGRI------ 321 + AV+G+SL++++GEILG+ G G+G+ L + GL + ++ G + Sbjct: 27 VKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELEEAVSI 86 Query: 322 ---LLSGKDI-------------THEP------TRRKLDAGLGFVPED-------RQRHG 352 L G+++ TH+P +K + V +D R + G Sbjct: 87 YEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMKVG 146 Query: 353 LILAFSVGENLVIHDYGRPPFSRYGILRYETIYEHAETLMSQFDVRAARGARTSAGELSG 412 I +GE + +H + S G+ R A L +F R ELSG Sbjct: 147 EI----IGEPVRVHGIEK---SSEGVKRRVIEVLEAVGLGKEFADRYPY-------ELSG 192 Query: 413 GNQQKAIIAREVHRSPRVLVVAQPTRGLDVGAIEYIHRRIVEERDK-GRAILLVSFDLDE 471 G +Q+ IAR + +P++LV+ +PT LDV I R + E K G LL++ D+ Sbjct: 193 GQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISV 252 Query: 472 ILDLSDRIAVIYRGRIV 488 + +S + V+Y G+I+ Sbjct: 253 VRYMSSSVVVMYSGKIM 269 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 65.5 bits (158), Expect = 3e-12 Identities = 61/239 (25%), Positives = 107/239 (44%), Gaps = 8/239 (3%) Query: 12 VEMMDIVKDFPGIRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRVR 71 V + D+ + G V L R + ++G NGAGK+T + + GL P G + + Sbjct: 3 VRVEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLD 62 Query: 72 GREVQVSNPNVATSLGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVARI 131 G E V G + + TV E V S RG + AR++ + Sbjct: 63 GFEATGRPEMVGRYAGYVPQNPSAPKLSPMTVRE-FVETSLRLRG----VTRARERAVEV 117 Query: 132 SREYGLEVDP-DARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELMEIM 190 G+ + ++R+ +LS+G QRV I + + D ++L+ DEP A + P E+ I+ Sbjct: 118 LHTLGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARII 177 Query: 191 RKLAGSGKTIILITHKLKEIKEVADECSVLRRGRLVATFPVSDVSEEEMAELMVGREVS 249 LA + +++ +H + D V+ R L+A+ P +V E++ + G V+ Sbjct: 178 AGLARE-RLVLMTSHDPSLLLGHTDIIVVINRD-LIASGPPEEVYREDVLRRVYGESVA 234 Score = 59.7 bits (143), Expect = 2e-10 Identities = 62/235 (26%), Positives = 103/235 (43%), Gaps = 18/235 (7%) Query: 280 VEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRILLSGKDITHEPTRRKLDA 339 + G++L R ++ + G +G G+ L A+ GL+ GR+ L G + T P + Sbjct: 18 LSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLDGFEATGRP--EMVGR 75 Query: 340 GLGFVPEDRQRHGLILAFSVGENLVIHDYGRPPFSRYGILR-YETIYEHAETLMSQFDVR 398 G+VP++ L + + ++ G+ R E E TL + +V Sbjct: 76 YAGYVPQNPSAPKL-------SPMTVREFVETSLRLRGVTRARERAVEVLHTLGIRGEVL 128 Query: 399 AARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLD-VGAIEYIHRRIVEERD 457 +R ELS G Q+ IAR + P++LV+ +P +D G +E RI+ Sbjct: 129 ESR-----LWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEI--ARIIAGLA 181 Query: 458 KGRAILLVSFDLDEILDLSDRIAVIYRGRIVAEVAAGETDENELGLLMAGSTARG 512 + R +L+ S D +L +D I VI R I + E+ L + S ARG Sbjct: 182 RERLVLMTSHDPSLLLGHTDIIVVINRDLIASGPPEEVYREDVLRRVYGESVARG 236 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 65.1 bits (157), Expect = 4e-12 Identities = 70/246 (28%), Positives = 119/246 (48%), Gaps = 29/246 (11%) Query: 264 LEIRELSVR--NERGIL-AVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLP----V 316 L IR+L+V +G++ A++G+ L V +GEIL + G G G+ L ++A +LP + Sbjct: 6 LSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAVI 65 Query: 317 ESGRILLS-GKDITHEPTRRKLDAGL-------GFVPEDRQRHGLILAFSVGENLVIHDY 368 E G I+L+ G T + R D + + +D L V + + H Sbjct: 66 EKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSA-ALSPVHKVKKQVTDHVS 124 Query: 369 GRPPFSRYGILRYETIYEHAETLMSQFDVRAARGARTS-AGELSGGNQQKAIIAREVHRS 427 G R E I A+ ++ + + A ELSGG +Q+ +IA + Sbjct: 125 GEKR-------RVEKI---AQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITR 174 Query: 428 PRVLVVAQPTRGLDVGAIEYIHRRIVEERDK-GRAILLVSFDLDEILDLSDRIAVIYRGR 486 PR+++ +PT LDV I + + R++ I+L++ +L +++DRIAV+Y G Sbjct: 175 PRIIIADEPTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGH 234 Query: 487 IVAEVA 492 +V EVA Sbjct: 235 VV-EVA 239 Score = 60.8 bits (146), Expect = 7e-11 Identities = 65/244 (26%), Positives = 108/244 (44%), Gaps = 44/244 (18%) Query: 24 IRANDHVTLRVREGTIHALLGENGAGKSTL--------------------MNILFG---- 59 + A D V L V +G I A++GE+G GKSTL +N+ G Sbjct: 22 VNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNTVD 81 Query: 60 -LHHPDSGVIRVRGREVQV--SNPNVATSLGIGMVHQHFKLVHNFTVAENIVMGSEPRRG 116 + + ++++RG+ V + +P+ A S VH+ K V + + E RR Sbjct: 82 LVRLSEDELVKIRGKIVSMIFQDPSAALS----PVHKVKKQVTDH-------VSGEKRR- 129 Query: 117 PFLDIETARQKVARISREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTA 176 +E Q++ + + + +LS G +QR+ I L RI+I DEPT Sbjct: 130 ----VEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPTT 185 Query: 177 VLTPQEIEELMEIMRKLAGS-GKTIILITHKLKEIKEVADECSVLRRGRLVATFPVSDVS 235 L ++++++ +L TIILITH L E+AD +V+ G +V V + Sbjct: 186 ALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVVEVADVFSLF 245 Query: 236 EEEM 239 E + Sbjct: 246 ERPL 249 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 64.7 bits (156), Expect = 5e-12 Identities = 66/229 (28%), Positives = 102/229 (44%), Gaps = 14/229 (6%) Query: 277 ILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRILLSGKDITHEPTRRK 336 + AV+ +++ + G+ LGL G G+G+ + L GRI G D+ K Sbjct: 49 VKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVM------K 102 Query: 337 LDAGLGFVPEDRQRHGLILAFSVGE---NLVIHDYGRPPFSRYGILRYETIYEHAETLMS 393 L G G + E R+R +I G I + P +GI + + E+ +L+ Sbjct: 103 L-RGRG-LKEFRRRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGI-KVGDLQEYIVSLLY 159 Query: 394 QFDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQPTRGLDVGAIEYIHRRIV 453 Q + R E SGG +Q+ IAR + P +V+ +PT LDV I + Sbjct: 160 QVGLNETHLYRYPH-EFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLK 218 Query: 454 E-ERDKGRAILLVSFDLDEILDLSDRIAVIYRGRIVAEVAAGETDENEL 501 + +R L +S DL + +SD IAV+Y G+IV A E E L Sbjct: 219 DLQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEVFEKPL 267 Score = 59.7 bits (143), Expect = 2e-10 Identities = 52/250 (20%), Positives = 114/250 (45%), Gaps = 26/250 (10%) Query: 9 DYVVEMMDIVKDFPG---------IRANDHVTLRVREGTIHALLGENGAGKSTLMNILFG 59 + +VE + + K FP ++A D+VT+ + G L+GE+G+GK+T ++ Sbjct: 25 ELLVETVGLKKYFPVKSLFFTRAYVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILR 84 Query: 60 LHHPDSG--------VIRVRGREVQVSNPNVATSLGIGMVHQHFKLVHNFTVAENIVMGS 111 L P G V+++RGR ++ + + ++ N++ + Sbjct: 85 LEEPTGGRIFFDGIDVMKLRGRGLKEFRRRAQI-----IFQDPYGSLNPRKTIFNLI--A 137 Query: 112 EPRRGPFLDIETARQKVARISREYGLEVDPDARI-EDLSVGSQQRVEILKMLYRDARILI 170 EP + + + ++ + + + GL R + S G +QR+ I ++L ++ Sbjct: 138 EPIKVHGIKVGDLQEYIVSLLYQVGLNETHLYRYPHEFSGGQRQRIAIARVLALKPEFIV 197 Query: 171 FDEPTAVLTPQEIEELMEIMRKLAGS-GKTIILITHKLKEIKEVADECSVLRRGRLVATF 229 DEPT+ L +++ +++ L T + I+H L ++ ++D +V+ G++V Sbjct: 198 LDEPTSALDVSVQAQILNLLKDLQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFG 257 Query: 230 PVSDVSEEEM 239 +V E+ + Sbjct: 258 EAEEVFEKPL 267 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 64.3 bits (155), Expect = 7e-12 Identities = 64/219 (29%), Positives = 102/219 (46%), Gaps = 23/219 (10%) Query: 11 VVEMMDIVKDFPG----IRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSG 66 VV + D+ +PG +R V+L G I L G G GKST++ + GL G Sbjct: 3 VVRLRDVWYRYPGGGWVLRG---VSLEAPRG-ITLLAGPTGGGKSTILRVAAGLATRIYG 58 Query: 67 VIRVRGREVQVSNPNVATSLGIGMVHQHFKL-VHNFTVAENIVMGSEPRRGPFLDIETAR 125 +RG EV+ V +V Q + L + + T E + E P + AR Sbjct: 59 GY-LRG-EVEARGKPV-------LVPQDYDLFILSLTPREELEYCYEASGLPPWE---AR 106 Query: 126 QKVARISREYGLEVDPDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEE 185 ++ R++ E G+E D R+ LS G +QRV I L A +L+ DEP A P +E Sbjct: 107 REAVRLAEELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVES 166 Query: 186 LMEIMRKLAGSGKTIILITHKLKEIKEVADECSVLRRGR 224 L+ ++R+L G +++ H++ + A ++ GR Sbjct: 167 LIRLLRRLDVEG--VVVAEHRVHYLLPAASSVYLVYDGR 203 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 60.5 bits (145), Expect = 1e-10 Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 19/238 (7%) Query: 269 LSVRNERGILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVESGRILLSGK-D 327 ++++ +R + AV+G+S ++ GE+ L G G G+ A+ L+ GR+ K + Sbjct: 39 ITMKPQRFVKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKE 98 Query: 328 ITHEPTRRKLDA-GLGFVPEDRQRHGLILAFSVGENLVIHD-YG--RPPFSRYGILRYET 383 + E RR + + G GFV +V D YG P F+ IL + Sbjct: 99 VLEELERRGVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILE-DP 157 Query: 384 IYEHAETLMSQFDVRAARGAR----TSAGE--------LSGGNQQKAIIAREVHRSPRVL 431 + H+ + + AR T A + LSGG +Q+ IAR +P ++ Sbjct: 158 LLIHSIGNAREREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLV 217 Query: 432 VVAQPTRGLDVGAIEYIHRRIVEERDK-GRAILLVSFDLDEILDLSDRIAVIYRGRIV 488 V +P LDV I ++ R+K G ++L ++ DL + DRIAV+Y G+IV Sbjct: 218 VADEPVSMLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIV 275 Score = 52.4 bits (124), Expect = 3e-08 Identities = 56/231 (24%), Positives = 102/231 (44%), Gaps = 26/231 (11%) Query: 24 IRANDHVTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRVRGRE--VQVSNPN 81 ++A D V+ + G + L+GE+G GK+T + L G + + ++ ++ Sbjct: 47 VKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERR 106 Query: 82 VATSLGIGMV------HQHFK-LVHNFTVAENIVMGS-EPR-------RGPFL--DIETA 124 SLG G V + FK L + GS PR P L I A Sbjct: 107 GVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNA 166 Query: 125 RQKVARISREY-GLEVDPDARIED-----LSVGSQQRVEILKMLYRDARILIFDEPTAVL 178 R++ ++R +++ P + D LS G +QRV I + + +++ DEP ++L Sbjct: 167 REREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSML 226 Query: 179 TPQEIEELMEIMRKLAGS-GKTIILITHKLKEIKEVADECSVLRRGRLVAT 228 E++E++ G +++ ITH L + + D +V+ G++V T Sbjct: 227 DVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVET 277 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 54.7 bits (130), Expect = 5e-09 Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 26/225 (11%) Query: 30 VTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRVRGRE---------VQVSNP 80 V+ + G++ ALLG NG+GK+TL+ +L G+ P G + V G ++P Sbjct: 25 VSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEVCGSPPGRVRRMLGYAPASP 84 Query: 81 NVATSLGIGMVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVARISREYGLEVD 140 V L V L++ + V+E + G ++V E G+ Sbjct: 85 EVDPRLKAVEV----ALLYRYGVSEGVAWGRRD-----------WEEVLAALGEMGVGEL 129 Query: 141 PDARIEDLSVGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELMEIMRKLAGSGKTI 200 R +LS G ++ V + +L R + + DEP + L + + ++R L G TI Sbjct: 130 AWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRSLRGRA-TI 188 Query: 201 ILITHKLKEIKEVADECSVLRRGRLVATFPVSDVSEEEMAELMVG 245 + TH AD +LR G L A P V E E + G Sbjct: 189 VYTTHD-PLAAMAADSVIMLREGLLHAQGPPEAVVTPETIEEVYG 232 Score = 49.3 bits (116), Expect = 2e-07 Identities = 62/252 (24%), Positives = 110/252 (43%), Gaps = 26/252 (10%) Query: 258 RPGSPALEIRELSVRNERGILAVEGLSLTVREGEILGLCGVDGNGQRELLYALAGLLPVE 317 RP S LE E +L G+S ++ G ++ L G +G+G+ LL LAG++ Sbjct: 2 RPCSVRLEGVEARYNTSPPVL--RGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPS 59 Query: 318 SGRILLSGKDITHEPTR-RKLDAGLGFVPEDRQRHGLILAFSVGENLVIHDYGRPPFSRY 376 GR+ + G P R R++ LG+ P + + A V +++ YG + Sbjct: 60 RGRVEVCGS----PPGRVRRM---LGYAPASPEVDPRLKAVEVA---LLYRYGVSEGVAW 109 Query: 377 GILRYETIYEHAETLMSQFDVRAARGARTSAGELSGGNQQKAIIAREVHRSPRVLVVAQP 436 G +E E L + ++ A GELS G ++ I+A + R P + ++ +P Sbjct: 110 GRRDWE------EVLAALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEP 163 Query: 437 TRGLDVGAIEYIHRRIVEERDKGRAILLVSFDLDEILDLSDRIAVIYRGRIVAE-----V 491 LDV + + +V +GRA ++ + +D + ++ G + A+ V Sbjct: 164 HSFLDVSNMRRV--TLVLRSLRGRATIVYTTHDPLAAMAADSVIMLREGLLHAQGPPEAV 221 Query: 492 AAGETDENELGL 503 ET E G+ Sbjct: 222 VTPETIEEVYGI 233 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 51.6 bits (122), Expect = 4e-08 Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 12/179 (6%) Query: 30 VTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRVRGREVQVSNPNVATSLGIG 89 V+L + G + G NG+GK+TL+ + GL P G V P +G Sbjct: 23 VSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRG-------RVSWGCPRGPRGC-VG 74 Query: 90 MVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVARISREYGLEVDPDARIEDLS 149 V + + TV EN+ S G D A A R GLE LS Sbjct: 75 YVGHTPMVYGDLTVWENVEFFSSLHGGSLGDYPLA----AEAWRLLGLEKYGSHLASQLS 130 Query: 150 VGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELMEIMRKLAGSGKTIILITHKLK 208 G ++R+++++ L + R+L+ DE L E L ++R G G +++ T L+ Sbjct: 131 FGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLLRLALGEGLALLMTTPLLE 189 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 48.1 bits (113), Expect = 5e-07 Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 28/196 (14%) Query: 30 VTLRVREGTIHALLGENGAGKSTLMNILFGLHHPDSGVIRVRGREVQVSNPNVATSLGIG 89 VTL + G + A+LG NG+GK+TL+ + L PD G V P +G Sbjct: 10 VTLSIPRG-VTAILGANGSGKTTLLKLAARLLKPDRG---------SVEGPR---RVGAA 56 Query: 90 MVHQHFKLVHNFTVAENIVMGSEPRRGPFLDIETARQKVARISREYGLEVDPDARIEDLS 149 + + + + TVAE++ + R + ++ RE GLE + LS Sbjct: 57 LQNPYLGFL-GPTVAEDLARTA-----------GGRGEALKLLREAGLEYASERSPYTLS 104 Query: 150 VGSQQRVEILKMLYRDARILIFDEPTAVLTPQEIEELMEIMRKLAGSGKTIILITHKLKE 209 +G + + +L + ++ DEPT+ L L ++ +L G +++ H + Sbjct: 105 MGEARILSVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLIARL---GVPVLVAGHDIDF 161 Query: 210 IKEVADECSVLRRGRL 225 VA +LR GR+ Sbjct: 162 AAAVAGWAVILRDGRV 177 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 554,014 Number of Sequences: 1700 Number of extensions: 27267 Number of successful extensions: 297 Number of sequences better than 1.0e-04: 40 Number of HSP's better than 0.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 102 Number of HSP's gapped (non-prelim): 101 length of query: 515 length of database: 492,079 effective HSP length: 81 effective length of query: 434 effective length of database: 354,379 effective search space: 153800486 effective search space used: 153800486 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719451|ref|YP_003874983.1| membrane lipoprotein tmpC precursor [Spirochaeta thermophila DSM 6192] (347 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431933|ref|NP_148712.2| membrane lipoprotein family protei... 125 1e-30 >gi|118431933|ref|NP_148712.2| membrane lipoprotein family protein [Aeropyrum pernix K1] Length = 447 Score = 125 bits (315), Expect = 1e-30 Identities = 105/319 (32%), Positives = 157/319 (49%), Gaps = 30/319 (9%) Query: 41 DVGGIDDRSFNQGTWEGIVRFGKEMGLEEGVGYKYLQSSQEADYVPNLATFADEGLDLIV 100 DVGG D SFN G R +E+G++ V ++ QS + V + A+ + E DLIV Sbjct: 85 DVGGRGDLSFNDMAALGADRAAEELGVD--VVFQTPQSLAVMESVLDAASRSGE-YDLIV 141 Query: 101 APGFLFQNAVAEVAKQYPDRKFLVIDTVVEA--PNVVSAVFAEHEGSFLVGVAAGLKAKQ 158 GFL+Q + +VA +YP++K+ +ID NV S +F E E + LVG+ A A Sbjct: 142 LVGFLWQEPLEKVAPRYPEQKYALIDAATRERYDNVASYLFREQEVASLVGIIAADIANN 201 Query: 159 DGKNV-----VGFLGGMQFPLIEKFQAGFEAGVK----AVYPECTILVDYAGDFAAPDKG 209 K G + GM P + +F G+ GV+ A+ + ++ Y G F P G Sbjct: 202 ISKATGEEAKAGAVAGMDIPPLWRFHIGYLYGVQYYNQAMGTDVEMVWTYTGRFDDPTLG 261 Query: 210 QAIAQKQFNAGAYIIFHAAGGTGNGMIKEAKERSQKGDIRWAIGVDKDQ-YQDGIYGEGT 268 + A++ G + + AG T GM KE + +G I ++IG D Q + D Sbjct: 262 KTTAEQMLQQGVRVFYGVAGLTHVGMFNAVKEAAARGVIAFSIGQDASQEWYD------P 315 Query: 269 SAVLTSMVKRVDVAAYTVAKMTMEGNFPGGQTLAFSLKNDGVGLPAENPNLSPEILAVVE 328 ++ S +KRVDVA YT K +EG F GG ++ LK G+GL E EI+ Sbjct: 316 QTIIISGLKRVDVAVYTAIKDVVEGRFRGG-IVSLGLKEGGLGLSDE------EIIRYFA 368 Query: 329 EYAKKIASGELVVPDTPKK 347 E A + +G+L TP+K Sbjct: 369 EIAAE--TGQLPEGLTPEK 385 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 376,782 Number of Sequences: 1700 Number of extensions: 18224 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 2 length of query: 347 length of database: 492,079 effective HSP length: 78 effective length of query: 269 effective length of database: 359,479 effective search space: 96699851 effective search space used: 96699851 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719452|ref|YP_003874984.1| deoxyribose-phosphate aldolase [Spirochaeta thermophila DSM 6192] (222 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431872|ref|NP_148609.2| deoxyribose-phosphate aldolase [Ae... 98 1e-22 >gi|118431872|ref|NP_148609.2| deoxyribose-phosphate aldolase [Aeropyrum pernix K1] Length = 235 Score = 98.2 bits (243), Expect = 1e-22 Identities = 80/220 (36%), Positives = 106/220 (48%), Gaps = 15/220 (6%) Query: 10 LAKMIDHTLLKPTATRAQIEALCDEAVRYGFASVCVNSWWVPLAAKRLSGS----GVMVC 65 LA ID TLL P AT + L EA YGF + P+ ++SG GV +C Sbjct: 21 LASRIDSTLLSPRATEEDVRNLVREASDYGFRCAVLT----PVYTVKISGLAEKLGVKLC 76 Query: 66 TVVGFPLGXXXXXXXXXXXXXXVVQGAREVDMVINLGLLKGGEYDLVREDIRAVVDAAAE 125 +V+GFPLG + GA E+D+V +L L G E V ++ +V A Sbjct: 77 SVIGFPLGQAPLEVKLVEAQTVLEAGATELDVVPHLSL--GPE--AVYREVSGIVKLAKS 132 Query: 126 --AHVKVIIEACYLSDEEKRRACLLAEEAGAHFVKTSTG-FGPSGATVEDVRLMREVVGE 182 A VKVI+EA D+ + AGA VKTSTG + G V RL Sbjct: 133 YGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTGVYTKGGDPVTVFRLASLAKPL 192 Query: 183 SLGVKAAGGIRSLETALAMIEAGASRLGTSSGVSIVAELK 222 +GVKA+GGIRS A+ + AGA +GTSS V ++ K Sbjct: 193 GMGVKASGGIRSGIDAVLAVGAGADIIGTSSAVKVLESFK 232 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 206,752 Number of Sequences: 1700 Number of extensions: 8508 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 1 length of query: 222 length of database: 492,079 effective HSP length: 73 effective length of query: 149 effective length of database: 367,979 effective search space: 54828871 effective search space used: 54828871 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719453|ref|YP_003874985.1| acetyltransferase [Spirochaeta thermophila DSM 6192] (187 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 184,859 Number of Sequences: 1700 Number of extensions: 7896 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 187 length of database: 492,079 effective HSP length: 72 effective length of query: 115 effective length of database: 369,679 effective search space: 42513085 effective search space used: 42513085 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719454|ref|YP_003874986.1| hypothetical protein STHERM_c17780 [Spirochaeta thermophila DSM 6192] (227 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 267,039 Number of Sequences: 1700 Number of extensions: 12684 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 227 length of database: 492,079 effective HSP length: 74 effective length of query: 153 effective length of database: 366,279 effective search space: 56040687 effective search space used: 56040687 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719455|ref|YP_003874987.1| hypothetical protein STHERM_c17790 [Spirochaeta thermophila DSM 6192] (48 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.145 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,695 Number of Sequences: 1700 Number of extensions: 1452 Number of successful extensions: 5 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 48 length of database: 492,079 effective HSP length: 21 effective length of query: 27 effective length of database: 456,379 effective search space: 12322233 effective search space used: 12322233 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719456|ref|YP_003874988.1| tetratricopeptide TPR2 [Spirochaeta thermophila DSM 6192] (168 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.142 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 155,223 Number of Sequences: 1700 Number of extensions: 5555 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 168 length of database: 492,079 effective HSP length: 71 effective length of query: 97 effective length of database: 371,379 effective search space: 36023763 effective search space used: 36023763 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719457|ref|YP_003874989.1| hypothetical protein STHERM_c17810 [Spirochaeta thermophila DSM 6192] (283 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 328,329 Number of Sequences: 1700 Number of extensions: 16982 Number of successful extensions: 78 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78 Number of HSP's gapped (non-prelim): 0 length of query: 283 length of database: 492,079 effective HSP length: 76 effective length of query: 207 effective length of database: 362,879 effective search space: 75115953 effective search space used: 75115953 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719458|ref|YP_003874990.1| D-alanyl-D-alanine carboxypeptidase [Spirochaeta thermophila DSM 6192] (387 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 359,621 Number of Sequences: 1700 Number of extensions: 15896 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 387 length of database: 492,079 effective HSP length: 79 effective length of query: 308 effective length of database: 357,779 effective search space: 110195932 effective search space used: 110195932 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719459|ref|YP_003874991.1| hypothetical protein STHERM_c17830 [Spirochaeta thermophila DSM 6192] (435 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 476,595 Number of Sequences: 1700 Number of extensions: 22460 Number of successful extensions: 83 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83 Number of HSP's gapped (non-prelim): 0 length of query: 435 length of database: 492,079 effective HSP length: 80 effective length of query: 355 effective length of database: 356,079 effective search space: 126408045 effective search space used: 126408045 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719460|ref|YP_003874992.1| membrane spanning protein [Spirochaeta thermophila DSM 6192] (122 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.133 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,601 Number of Sequences: 1700 Number of extensions: 2504 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 122 length of database: 492,079 effective HSP length: 67 effective length of query: 55 effective length of database: 378,179 effective search space: 20799845 effective search space used: 20799845 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719461|ref|YP_003874993.1| hypothetical protein STHERM_c17850 [Spirochaeta thermophila DSM 6192] (65 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,244 Number of Sequences: 1700 Number of extensions: 2098 Number of successful extensions: 7 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 65 length of database: 492,079 effective HSP length: 37 effective length of query: 28 effective length of database: 429,179 effective search space: 12017012 effective search space used: 12017012 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719462|ref|YP_003874994.1| DNA translocase FtsK [Spirochaeta thermophila DSM 6192] (849 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 703,346 Number of Sequences: 1700 Number of extensions: 29023 Number of successful extensions: 120 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120 Number of HSP's gapped (non-prelim): 0 length of query: 849 length of database: 492,079 effective HSP length: 85 effective length of query: 764 effective length of database: 347,579 effective search space: 265550356 effective search space used: 265550356 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719463|ref|YP_003874995.1| undecaprenyl-diphosphatase [Spirochaeta thermophila DSM 6192] (266 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.148 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 171,277 Number of Sequences: 1700 Number of extensions: 5857 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 266 length of database: 492,079 effective HSP length: 75 effective length of query: 191 effective length of database: 364,579 effective search space: 69634589 effective search space used: 69634589 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719464|ref|YP_003874996.1| transglycosylase [Spirochaeta thermophila DSM 6192] (693 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.135 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 580,649 Number of Sequences: 1700 Number of extensions: 23631 Number of successful extensions: 78 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78 Number of HSP's gapped (non-prelim): 0 length of query: 693 length of database: 492,079 effective HSP length: 83 effective length of query: 610 effective length of database: 350,979 effective search space: 214097190 effective search space used: 214097190 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719465|ref|YP_003874997.1| hypothetical protein STHERM_c17890 [Spirochaeta thermophila DSM 6192] (202 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 150,467 Number of Sequences: 1700 Number of extensions: 4343 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 202 length of database: 492,079 effective HSP length: 73 effective length of query: 129 effective length of database: 367,979 effective search space: 47469291 effective search space used: 47469291 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719466|ref|YP_003874998.1| hypothetical protein STHERM_c17900 [Spirochaeta thermophila DSM 6192] (116 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.134 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,794 Number of Sequences: 1700 Number of extensions: 3469 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 116 length of database: 492,079 effective HSP length: 66 effective length of query: 50 effective length of database: 379,879 effective search space: 18993950 effective search space used: 18993950 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719467|ref|YP_003874999.1| N-carbamoyl-D-amino acid hydrolase [Spirochaeta thermophila DSM 6192] (272 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431809|ref|NP_148508.2| hydrolase [Aeropyrum pernix K1] 75 1e-15 gi|118431705|ref|NP_148349.2| carbon-nitrogen hydrolase [Aeropyr... 52 2e-08 gi|14601345|ref|NP_147881.1| hypothetical protein APE_1343 [Aero... 42 1e-05 >gi|118431809|ref|NP_148508.2| hydrolase [Aeropyrum pernix K1] Length = 268 Score = 75.5 bits (184), Expect = 1e-15 Identities = 80/260 (30%), Positives = 121/260 (46%), Gaps = 28/260 (10%) Query: 1 MNVGYLQFAPLFGEPEKNLEAIREHILGHLQGGGTKPDLLVLPELALSGYLFLSQDEVVR 60 MN+ LQ A E + NLE+++ + ++ PD+++ PE + L +D + Sbjct: 1 MNIAVLQVAST-REKDANLESVKR-LASRVKNS---PDIVLTPEYLMLDPTGLGRDAIYD 55 Query: 61 TAEPVDTGPCIEALSRLAQETGIHLALG--FAEEEMGRYYNSAVLLTPEGRRF-LYRKMH 117 AE ++ G LS++A+ G L LG F + GR N+AVL + +G +YRK H Sbjct: 56 AAEDLE-GRWSRELSKIAESLGSCL-LGHLFLKTPSGRVANAAVLYSRDGGIIGVYRKTH 113 Query: 118 LFAE----EKHFFSPGNLGFPVFTIQGVRVALLVCFDHMFPEAARTVALQGA-HVVCHPS 172 LF E F PG+ + G + + +C++ FPE RT +L G + P+ Sbjct: 114 LFDAYGYVESSFTEPGDELWEPRKACGASIGVAICYELRFPEIFRTQSLVGGVDIFLVPA 173 Query: 173 NLVL----PEYGQLTTRVRAIENRIFWILANRIGVEERGGKRLRYTGRSHIISPTGTILA 228 E + +R RA EN + +A+ G + GRS II P G LA Sbjct: 174 AWYRGPGKEEALSVLSRARAQENTSYVAVASNAGAN--------FVGRSMIIHPLGYTLA 225 Query: 229 QAPEEEPALHVVEIDPKEAE 248 QAP E L EID +E E Sbjct: 226 QAPPWEWVLE-HEIDLREIE 244 >gi|118431705|ref|NP_148349.2| carbon-nitrogen hydrolase [Aeropyrum pernix K1] Length = 299 Score = 52.0 bits (123), Expect = 2e-08 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 12/155 (7%) Query: 80 ETGIHLALGFAEEEMGRYYNSAVLLTPEG-RRFLYRKMHLFAEEKHF--FSPGNLGFPVF 136 ++G+++ G A E GR YN+A + +PEG + RK ++ E+ F + + V Sbjct: 63 DSGVYVVAGIAYREGGRLYNTATIYSPEGYPLYRQRKRYVGRLERRLWGFDRWSGDYGVV 122 Query: 137 TIQGVRVALLVCFDH-MFPEAARTVALQGAHVVCHPSNLVLPEYGQLTTRV-RAIENRIF 194 I GV++ + VC D FPEAA + L GA + +PS + E + + RA++ F Sbjct: 123 DIGGVKLGVAVCADFWSFPEAALELFLGGADLFINPSYMFSMEGHWIKANLSRALD---F 179 Query: 195 WILANRIGVEERGGKRLRYT----GRSHIISPTGT 225 + + + RYT G SH+I P T Sbjct: 180 YTPVVGVDMASFPLSTKRYTFRGGGLSHVIVPPST 214 >gi|14601345|ref|NP_147881.1| hypothetical protein APE_1343 [Aeropyrum pernix K1] Length = 306 Score = 42.4 bits (98), Expect = 1e-05 Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 17/148 (11%) Query: 38 DLLVLPELALSGYLF---------LSQDEVVR--TAEPVDTGPCIEALSRLAQETGIHLA 86 DL+VLP +G L L E+ + + + GP + +SR +QE G+++ Sbjct: 36 DLIVLPAYPFTGPLIGYYPPSKARLKLRELAEKISEKNIPAGPSVSFMSRWSQEYGVYIL 95 Query: 87 LGFAEEEMG-RYYNSAVLLTPEGR-RFLYRKMHLFAEEKHF-FSPG-NLGFPVFTIQGVR 142 G E G R Y + VL +P+G YRK+ L EE+ SPG G + G Sbjct: 96 GGPIIERAGPRIYVTTVLTSPDGSIAGKYRKVSLTEEERDMGISPGKEPGIFKLKVNGSD 155 Query: 143 VALLVCFDH--MFPEAARTVALQGAHVV 168 V+L V D PE R + L G+ ++ Sbjct: 156 VSLGVFSDEDLATPEIFRHLQLGGSKII 183 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 293,060 Number of Sequences: 1700 Number of extensions: 13403 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 3 length of query: 272 length of database: 492,079 effective HSP length: 75 effective length of query: 197 effective length of database: 364,579 effective search space: 71822063 effective search space used: 71822063 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719468|ref|YP_003875000.1| hypothetical protein STHERM_c17920 [Spirochaeta thermophila DSM 6192] (141 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 165,581 Number of Sequences: 1700 Number of extensions: 7715 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 141 length of database: 492,079 effective HSP length: 69 effective length of query: 72 effective length of database: 374,779 effective search space: 26984088 effective search space used: 26984088 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719469|ref|YP_003875001.1| transporter [Spirochaeta thermophila DSM 6192] (321 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 317,803 Number of Sequences: 1700 Number of extensions: 14323 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 0 length of query: 321 length of database: 492,079 effective HSP length: 77 effective length of query: 244 effective length of database: 361,179 effective search space: 88127676 effective search space used: 88127676 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719470|ref|YP_003875002.1| glycine betaine/L-proline ABC transporter permease [Spirochaeta thermophila DSM 6192] (375 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601088|ref|NP_147614.1| spermidine/putrescine ABC transport... 42 3e-05 gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease... 41 6e-05 >gi|14601088|ref|NP_147614.1| spermidine/putrescine ABC transporter permease [Aeropyrum pernix K1] Length = 267 Score = 41.6 bits (96), Expect = 3e-05 Identities = 49/212 (23%), Positives = 95/212 (44%), Gaps = 34/212 (16%) Query: 170 LSLSGAGILIATLAGIPLGILAHKNKKAGGVVFSFTGGIQTIPSLALFGLLIAPLAALSE 229 L+++ A + +TL G+ G+ ++ K G +V + +P +A L+ L AL Sbjct: 64 LAIAAASAVSSTLLGVAAGLAVRRHGKVG-LVDAIMYPPLVLPEIAEAAALLLFLTALDV 122 Query: 230 AVPVLRDVGISG--LGNTPALIALSLYALLPIVRTTAAGLSLLEKGLLEAARGMGLSPLQ 287 D+G+ +G+T IA P ++ +++ L +AAR +G +P + Sbjct: 123 ------DLGLKTVVIGHTAFNIAYVYVVAAPALQRSSS--------LEDAARTLGATPAR 168 Query: 288 RLFWVEIPVSLPVILAG------------LRTASVQVVGTTTVAALIGAGGFGRFIFQGL 335 L + IP++ P I AG ++T + G T+ L+ + R GL Sbjct: 169 TLVTITIPLAAPAIYAGFTLAFILSFTDFIKTLFTRGPGIETIPILL----WNRARRPGL 224 Query: 336 GQ-SAYDLIALGVLPTVLLSLGVDRAWALVIT 366 + S++ +A + + +SL V A+ ++ T Sbjct: 225 SEFSSFSYLAAITMVLLAVSLAVALAYVILST 256 >gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease ModB [Aeropyrum pernix K1] Length = 261 Score = 40.8 bits (94), Expect = 6e-05 Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 7/178 (3%) Query: 175 AGILIATLAGIPLGILAHKNKKAGGVVFSFTGGIQTIPSLALFGLLIAPLAALSEAVPVL 234 + +L TLA P +A + + ++ + +IP + GL A L + P+ Sbjct: 58 SSVLAVTLATAPAYAMARQEGRLTRLISQLHLLLLSIPPV---GLGTAALILFTRYPPLN 114 Query: 235 RDVGISGLGNTP-ALIALSLYALLPIVRTTAAGL-SLLEKGLLEAARGMGLSPLQRLFWV 292 GL +P A+I L PI + G+ S++ + L EAA G LQ L + Sbjct: 115 SISETLGLFFSPKAVILAQLLVTTPIAVSMLTGVFSMVPRELEEAAEAYGAGRLQILIRI 174 Query: 293 EIPVSLPVILAGLRTASVQVVGTTTVAALIGAGGFGRFIFQGLGQSAYDLIALGVLPT 350 +P+SLP IL+ L + +G ++ GR + L + Y+ I+L + T Sbjct: 175 VLPLSLPGILSALAVTFFRALGEFGATLVLAGNIPGR--TETLPLALYNAISLADVET 230 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 355,140 Number of Sequences: 1700 Number of extensions: 15936 Number of successful extensions: 95 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 95 Number of HSP's gapped (non-prelim): 2 length of query: 375 length of database: 492,079 effective HSP length: 78 effective length of query: 297 effective length of database: 359,479 effective search space: 106765263 effective search space used: 106765263 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719471|ref|YP_003875003.1| transporter [Spirochaeta thermophila DSM 6192] (237 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 124 2e-30 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 109 5e-26 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 108 2e-25 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 105 8e-25 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 102 9e-24 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 101 2e-23 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 99 1e-22 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 91 3e-20 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 90 6e-20 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 87 4e-19 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 86 8e-19 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 84 2e-18 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 78 2e-16 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 75 1e-15 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 74 3e-15 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 72 2e-14 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 71 3e-14 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 70 4e-14 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 69 8e-14 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 67 3e-13 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 64 4e-12 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 60 4e-11 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 59 1e-10 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 56 7e-10 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 56 9e-10 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 55 1e-09 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 55 1e-09 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 54 5e-09 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 53 6e-09 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 53 8e-09 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 52 1e-08 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 52 2e-08 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 49 1e-07 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 49 1e-07 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 47 6e-07 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 46 1e-06 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 42 1e-05 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 42 2e-05 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 40 4e-05 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 40 4e-05 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 124 bits (311), Expect = 2e-30 Identities = 76/202 (37%), Positives = 112/202 (55%), Gaps = 3/202 (1%) Query: 1 MGYVIQHIGLFPHWTVERNICTVPRLLGWPPEQQRARALELLEMVGL-PPEEYARKMPHQ 59 +G+V Q + LFPH TV N+ R G+ + R + LE VGL PP E+ + Sbjct: 79 VGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWALETVGLTPPREFMGRRVTG 138 Query: 60 LSGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTHD 119 LSGG+ QRV +ARA+A +PPV+L+DEP D R RL E +QR+L T+++VTHD Sbjct: 139 LSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQRKLGSTMIYVTHD 198 Query: 120 MGEAIRLGDRIILMREGRVVREAA-TEDLVRSGDGFVKTFLGSESVLLLLECHTMEEIAR 178 EA+ L D +++MR+GR+V+ +E R + +V TF G ++ + E T Sbjct: 199 QWEAMELADTLVIMRDGRIVQHGTPSEVYTRPANVYVATFFGDANI-IPKELLTPGSGGE 257 Query: 179 PAPSTIPEELPRVPGAATVKEG 200 A PE+L V + V +G Sbjct: 258 WAIMVRPEDLEIVRNGSPVPQG 279 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 109 bits (273), Expect = 5e-26 Identities = 66/167 (39%), Positives = 97/167 (58%), Gaps = 9/167 (5%) Query: 4 VIQHIGLFPHWTVERNICTVPRLLGWPPEQ--QRAR-ALELLEMVGLPPEEYARKMPHQL 60 V Q L+PH V NI ++ P ++ +R R A ELLE+ + + PHQL Sbjct: 80 VFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAAELLEI-----DHLLDRYPHQL 134 Query: 61 SGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTHDM 120 SGG+ QRV VARA+ +P V+LMDEP D + R +++ E +QRRL T+++VTHD Sbjct: 135 SGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKLQRRLGVTMIYVTHDQ 194 Query: 121 GEAIRLGDRIILMREGRVVREAATEDLV-RSGDGFVKTFLGSESVLL 166 EA+ +GDRI++M G + + D+ R + FV TF+GS + L Sbjct: 195 VEAMVIGDRIVVMNFGEIQQVGTPSDVYHRPANTFVATFIGSPQMNL 241 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 108 bits (269), Expect = 2e-25 Identities = 72/197 (36%), Positives = 108/197 (54%), Gaps = 9/197 (4%) Query: 4 VIQHIGLFPHWTVERNICTVPRL----LGWPPEQQRARALELLEMVGLPPEEYARKMPHQ 59 V Q+ L+PH +V NI L +G + R R +E+ +++ + E+ + P Q Sbjct: 80 VFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIEVAKLLRI--EDLLDRKPGQ 137 Query: 60 LSGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTHD 119 LSGG+ QRV +ARAL P V LMDEP D L R ++ E +Q+ L+ T V+VTHD Sbjct: 138 LSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELKKLQKDLKITTVYVTHD 197 Query: 120 MGEAIRLGDRIILMREGRVVREAATEDL-VRSGDGFVKTFLGSESVLLLLECHTMEEIAR 178 EA+ + DRI +M +GRVV+ E++ +R FV TF+G+ + L+EC +E + Sbjct: 198 QAEAMSMADRIAVMNKGRVVQVGTPEEVYMRPKHTFVATFIGAPP-MNLVEC-DVESVGE 255 Query: 179 PAPSTIPEELPRVPGAA 195 + P RVP A Sbjct: 256 DLWISCPGFSRRVPEEA 272 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 105 bits (263), Expect = 8e-25 Identities = 65/166 (39%), Positives = 95/166 (57%), Gaps = 9/166 (5%) Query: 4 VIQHIGLFPHWTVERNICTVPRLLGWPPEQ--QRAR-ALELLEMVGLPPEEYARKMPHQL 60 V Q+ L+PH V NI +L P + +R R A ELLE+ + + PHQL Sbjct: 80 VFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWAAELLEI-----DHLLDRYPHQL 134 Query: 61 SGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTHDM 120 SGG+ QRV VARA+ +P V+LMDEP D R +++EE + +Q+RL T+V+VTHD Sbjct: 135 SGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQKRLGVTIVYVTHDQ 194 Query: 121 GEAIRLGDRIILMREGRVVREAATEDLV-RSGDGFVKTFLGSESVL 165 EA+ + R+ +M GRV + ++ + FV TF+G +VL Sbjct: 195 EEALSISHRVAVMNRGRVEQVGTPMEVYEKPATYFVATFIGRSTVL 240 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 102 bits (254), Expect = 9e-24 Identities = 64/166 (38%), Positives = 96/166 (57%), Gaps = 7/166 (4%) Query: 1 MGYVIQHIGLFPHWTVERNIC-TVPRLLGWPPEQQRARALELLEMVGLPPEEYARKMPHQ 59 +GY+ Q LFPH TV RNI + + LG RA++ L M+G+ E+ A + P + Sbjct: 83 IGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAEERAVKYLSMLGI--EDLAHRHPAR 140 Query: 60 LSGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTHD 119 LSGG+ QR +ARALA +P ++L+DEP A DP +R+ + E + L K ++ VTH+ Sbjct: 141 LSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEALFRV-ATLGKAMIVVTHE 199 Query: 120 MGEAIRLGDRIILMREGRVVREAATEDLVRSGDGFVKTFLGSESVL 165 A+++ DR+ M +G V E +LV G V+ FL ES+L Sbjct: 200 ADFAVKVADRMAFMEDGIVKEEGKPSELV-EGSERVRRFL--ESIL 242 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 101 bits (251), Expect = 2e-23 Identities = 56/162 (34%), Positives = 92/162 (56%), Gaps = 3/162 (1%) Query: 1 MGYVIQHIGLFPHWTVERNICTVPRLLGWPPEQQRARALELLEMVGLPPEEYARKMPHQL 60 +G V Q+ L+PH TV NI RL + + + L + +++G+ E + P QL Sbjct: 77 IGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVAKLLGI--EGLLDRYPAQL 134 Query: 61 SGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTHDM 120 SGG+ QRV +ARAL +P V+L+DEP D L R +++ E +Q+ L T ++VTHD Sbjct: 135 SGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQKELGITAIYVTHDQ 194 Query: 121 GEAIRLGDRIILMREGRVVREAATEDL-VRSGDGFVKTFLGS 161 EA+ + DRI ++ G + + D+ + + FV +F+G+ Sbjct: 195 SEALAMADRIAIIASGVIQQVGKPWDVYYKPRNVFVASFIGT 236 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 99.0 bits (245), Expect = 1e-22 Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 5/166 (3%) Query: 2 GYVIQHIGLFPHWTVERNICTVPRLLGWPPEQQRARALE--LLEMVGLPPEEYAR--KMP 57 G V Q FPH T+ N+ P+L G ++ + L+M L E R P Sbjct: 87 GMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEIVEWALKMAHLWDEVKDRLSDYP 146 Query: 58 HQLSGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVT 117 HQLSGG+ QR+ +ARALA P V+L+DEP DP++ ++++ + + TV+ VT Sbjct: 147 HQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKEEMATVIIVT 206 Query: 118 HDMGEAIRLGDRIILMREGRVVREAATEDLV-RSGDGFVKTFLGSE 162 H +A R+ D+I+ + EGRV+ T++LV R K FLG E Sbjct: 207 HTPQQAARISDQILFLYEGRVIEYGPTKELVLRPRHELTKKFLGGE 252 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 90.5 bits (223), Expect = 3e-20 Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 1/120 (0%) Query: 32 EQQRARALELLEMVGLPP-EEYARKMPHQLSGGEAQRVGVARALAADPPVILMDEPFGAA 90 E+ R RA+E+LE VGL P E+ + PHQLSGG+ QRV +AR L +P VI+ DEP Sbjct: 135 EEARRRAVEMLETVGLTPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMI 194 Query: 91 DPLTRSRLQEEFLAIQRRLRKTVVFVTHDMGEAIRLGDRIILMREGRVVREAATEDLVRS 150 D R+ + + + RR T+V +THD+ A + DRI +M G++V ++ + Sbjct: 195 DVSMRASILDLIMDYHRRTGATIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVIEN 254 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 89.7 bits (221), Expect = 6e-20 Identities = 59/138 (42%), Positives = 74/138 (53%), Gaps = 6/138 (4%) Query: 1 MGYVIQHIGLFPHWTVERNICTVPRLLGWPPEQQRARALELLEMVGLPPEEYARKMPHQL 60 +GYV Q L P T NI L G + R R ELL VGL +E R+ P +L Sbjct: 94 VGYVFQQHNLIPTLTALENILLPMALAG---KANRLRGQELLRRVGLGGKE--RRYPEEL 148 Query: 61 SGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTHDM 120 SGGE QR+ VA ALA DPP+I+ DEP G D T R+ L KTVV THD Sbjct: 149 SGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEAHSRGKTVVLTTHDP 208 Query: 121 GEAIRLGDRIILMREGRV 138 A R+ DR+ ++ +GR+ Sbjct: 209 RVA-RMADRVAVIEDGRL 225 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 87.0 bits (214), Expect = 4e-19 Identities = 58/149 (38%), Positives = 79/149 (53%), Gaps = 11/149 (7%) Query: 19 NICTVPRLLGWPPEQQRARALELLEMVGLPPEEYARKMPHQLSGGEAQRVGVARALAADP 78 N+ +L G PP + + R ELLE+VGL EE+A S G QR+ +AR L DP Sbjct: 107 NLWFFSQLYGIPPREAKRRVKELLEIVGL--EEWAHVRVENYSKGMKQRLHIARGLINDP 164 Query: 79 PVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTHDMGEAIRLGDRIILMREGRV 138 V+L+DEP DP ++ I R R TV+ TH M EA L DR+ ++ +GR+ Sbjct: 165 EVLLLDEPTIGLDPKAAREVRSIIRRIVREGR-TVLLTTHYMVEAEELSDRVAIISKGRI 223 Query: 139 VREAATEDLVRSGDGFVKTFLGSESVLLL 167 V E EDL K+ +G ESV+ L Sbjct: 224 VAEGPPEDL--------KSLVGGESVIEL 244 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 85.9 bits (211), Expect = 8e-19 Identities = 73/223 (32%), Positives = 104/223 (46%), Gaps = 19/223 (8%) Query: 4 VIQHIGLFPHWTVERNICTVPRLLGWPPEQQRARALELLEMVGLPPEEYARKMPHQLSGG 63 V Q L TVE NI LG + R R LE E +GL E K L G Sbjct: 93 VYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRTLETAERLGL--EIDLAKTVADLPMG 150 Query: 64 EAQRVGVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTHDMGEA 123 QRV + +AL+ V+++DEP PL +L L + + + +VV++TH +GE Sbjct: 151 ARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFST-LRLLKDMGVSVVYITHKLGEV 209 Query: 124 IRLGDRIILMREGRVVREAATEDLVRSGDGFVKTFLGSESVLLLLECHTMEEIARPAPST 183 +R+ DR+ ++R GRV A ED+ R+ SE L L T+ P Sbjct: 210 VRVADRVTVLRRGRV--SAVIEDVGRT----------SEEELARLMVGTLPPPTPRPPGK 257 Query: 184 IPEELPRVPGAATVKEGLSLLLESGAPMLAVEEHGGILGIAGL 226 + EL V G + V +G+ + E L V E G I+GIAG+ Sbjct: 258 VGRELLSVRGVSVVVDGVERVREVS---LEVRE-GEIVGIAGV 296 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 84.3 bits (207), Expect = 2e-18 Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%) Query: 33 QQRARALELLEMVGLPPEEYARKMPHQLSGGEAQRVGVARALAADPPVILMDEPFGAADP 92 + + A + LE+VG+P + A PHQLSGG+ QRV +A A+A +P +++ DEP A D Sbjct: 127 EAESMAGDALELVGIPRDR-ASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDV 185 Query: 93 LTRSRLQEEFLAIQRRLRKTVVFVTHDMGEAIRLGDRIILMREGRVVREAATEDLV 148 + ++++ + +Q TV+ VTHD+G A DRI +M G +V ED+V Sbjct: 186 VVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDVV 241 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 78.2 bits (191), Expect = 2e-16 Identities = 39/108 (36%), Positives = 65/108 (60%), Gaps = 2/108 (1%) Query: 32 EQQRARALELLEMVGLPPEEYARKMPHQLSGGEAQRVGVARALAADPPVILMDEPFGAAD 91 E+ AR LE +++ P ++ + PHQLSGG+ QRV +ARA +P +++ DEP D Sbjct: 170 EEMVARMLEAVKLT--PASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSMLD 227 Query: 92 PLTRSRLQEEFLAIQRRLRKTVVFVTHDMGEAIRLGDRIILMREGRVV 139 R+ + E L + +L +++F+THD+ A + DRI +M G++V Sbjct: 228 VSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIV 275 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 75.1 bits (183), Expect = 1e-15 Identities = 36/111 (32%), Positives = 68/111 (61%), Gaps = 1/111 (0%) Query: 32 EQQRARALELLEMVGLPPEEYARKMPHQLSGGEAQRVGVARALAADPPVILMDEPFGAAD 91 E + R +E+LE VGL +E+A + P++LSGG+ QRV +ARALA +P ++++DEP A D Sbjct: 163 EGVKRRVIEVLEAVGLG-KEFADRYPYELSGGQRQRVAIARALALNPKILVLDEPTSALD 221 Query: 92 PLTRSRLQEEFLAIQRRLRKTVVFVTHDMGEAIRLGDRIILMREGRVVREA 142 ++++ + ++ T + +THD+ + +++M G+++ A Sbjct: 222 VSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMYSGKIMESA 272 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 73.9 bits (180), Expect = 3e-15 Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 2/130 (1%) Query: 10 LFPHWTVERNICTVPRL-LGWPPEQQRARALELLEMVGLPPEEYARKMPHQLSGGEAQRV 68 L P +TV R I V ++ G + R R ELLE VGL A + PH+LSGG+ QRV Sbjct: 105 LTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELLESVGLH-RSIADRYPHELSGGQKQRV 163 Query: 69 GVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTHDMGEAIRLGD 128 +A ALA +P +++ DEP A D + ++++ + +++ +THD+ L + Sbjct: 164 VIAMALALEPDIVIADEPTTALDVVVQAQILNLLKKLAWEKNLSIILITHDLSVIAELAE 223 Query: 129 RIILMREGRV 138 +++M G++ Sbjct: 224 TVMIMYGGKI 233 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 71.6 bits (174), Expect = 2e-14 Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%) Query: 39 LELLEMVGLPPEEYARKMPHQLSGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSRL 98 + LL VGL E + + PH+ SGG+ QR+ +AR LA P I++DEP A D ++++ Sbjct: 155 VSLLYQVGLN-ETHLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQI 213 Query: 99 QEEFLAIQRRLRKTVVFVTHDMGEAIRLGDRIILMREGRVVREAATEDL 147 +QR+ T +F++HD+G + D I +M G++V E++ Sbjct: 214 LNLLKDLQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEV 262 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 70.9 bits (172), Expect = 3e-14 Identities = 46/150 (30%), Positives = 80/150 (53%), Gaps = 6/150 (4%) Query: 1 MGYVIQHIGLFPHWTVERNICTVPRLLGWPPEQQRARALELLEMVGLPPEEYARKMPHQL 60 +G+ Q + T I V LLG P R A +LEM+G E+ ++ +L Sbjct: 80 IGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREARRVLEMLGF--EDVLGRVVARL 137 Query: 61 SGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLR-KTVVFVTHD 119 SGG+ + +G+A ALA++P V+++DEP D R L + ++++ + +TV+F +HD Sbjct: 138 SGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESL---WASLRKAFKGRTVLFSSHD 194 Query: 120 MGEAIRLGDRIILMREGRVVREAATEDLVR 149 EA DR+++M GR+ +L++ Sbjct: 195 PQEAEAESDRVLIMHRGRLAAWGKPRELIQ 224 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 70.5 bits (171), Expect = 4e-14 Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 1/106 (0%) Query: 38 ALELLEMVGLP-PEEYARKMPHQLSGGEAQRVGVARALAADPPVILMDEPFGAADPLTRS 96 A E+L+ + +P P K PH+LSGG QR+ +A +L P +I+ DEP A D ++ Sbjct: 134 AQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQA 193 Query: 97 RLQEEFLAIQRRLRKTVVFVTHDMGEAIRLGDRIILMREGRVVREA 142 ++ + ++ L T++ +TH++ A + DRI +M G VV A Sbjct: 194 QILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVVEVA 239 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 69.3 bits (168), Expect = 8e-14 Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 1/141 (0%) Query: 9 GLFPHWTVERNICTVPRLLGWPPEQQRARALELLEMVGLPPEEYARKMPHQLSGGEAQRV 68 G + T N+ R+ G P + ++R E+L++VGL A K ++S G R+ Sbjct: 96 GFYWKLTGRENLYYFGRIYGIPQGELKSRIKEVLDLVGLTDLGGADKPFEEMSLGMKARL 155 Query: 69 GVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTHDMGEAIRLGD 128 G+AR L DP V+++DEP DP + ++ ++ R T+ TH+M EA + D Sbjct: 156 GLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSLASEGR-TIFITTHNMVEAEMISD 214 Query: 129 RIILMREGRVVREAATEDLVR 149 R+ ++ GR+ E ++L R Sbjct: 215 RVGIIIGGRIAMEGTPDELKR 235 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 67.4 bits (163), Expect = 3e-13 Identities = 35/112 (31%), Positives = 65/112 (58%), Gaps = 1/112 (0%) Query: 37 RALELLEMVGLP-PEEYARKMPHQLSGGEAQRVGVARALAADPPVILMDEPFGAADPLTR 95 RA+ +L+ V +P PE+ + PH+LSGG QR + +L+ P +++ DEP A D + Sbjct: 142 RAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLIADEPTTALDVTIQ 201 Query: 96 SRLQEEFLAIQRRLRKTVVFVTHDMGEAIRLGDRIILMREGRVVREAATEDL 147 +++ + ++R T++ +TH++G DR+ +M G +V EA ++L Sbjct: 202 AQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEEAPVDEL 253 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 63.5 bits (153), Expect = 4e-12 Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 3/129 (2%) Query: 19 NICTVPRLLGWPPEQQRARALELLEMVGLPPEEYARKMPHQLSGGEAQRVGVARALAADP 78 N+ RL G P + R R E+L+ + L E A + SGG +++ +A +L P Sbjct: 99 NVYIQARLYGLPSSEARERTREVLDYLDLM--EAAHRRVATYSGGMRRKLEIAMSLVHSP 156 Query: 79 PVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTHDMGEAIRLGDRIILMREGRV 138 V+ +DEP D +R L ++ +R T++ TH M EA L DR+ ++ GR+ Sbjct: 157 KVLFLDEPTLGLDVHSRRSLWR-YIEDLKRSAVTILLTTHYMEEAEMLSDRVAIIDRGRI 215 Query: 139 VREAATEDL 147 V E E+L Sbjct: 216 VAEGTPEEL 224 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 60.5 bits (145), Expect = 4e-11 Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 15/165 (9%) Query: 1 MGYVIQHIGLFPHWTVERNICTVPRLLGW--PPEQQRARALELLEMVGLPPEEYARKMPH 58 M ++ Q +F TV N+ RL G+ P + R R E+ M E +K Sbjct: 82 MTFIFQLENIFRELTVYENL----RLAGYDLPEDVFRDRLEEVFSMFPRLKERLGQKAG- 136 Query: 59 QLSGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRK---TVVF 115 LSGGE Q + +A + P V L+DEP P +L +E L+ R L K TVV Sbjct: 137 TLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSP----KLAKEVLSYVRILNKEGYTVVL 192 Query: 116 VTHDMGEAIRLGDRIILMREGRVVREAATEDLVRSGDGFVKTFLG 160 V ++ ++ +GD+ +L+ GR+ + E+L+ D K +LG Sbjct: 193 VEQNVKASLEIGDKGVLVVNGRIAFDGPAEELLARKD-LAKMYLG 236 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 58.9 bits (141), Expect = 1e-10 Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 20/156 (12%) Query: 1 MGYVIQHIGLFPHWTVERNICTVPRLLGWPPEQQRARALELLEMVGLPPEEYARK--MPH 58 + +V + G+FP TV N+ R+ + L ++ + P AR+ + Sbjct: 83 ISHVPEGRGIFPRLTVYENL----RVAASTRRAKEHFQDSLEQVYTIFPILKARRSQLAG 138 Query: 59 QLSGGEAQRVGVARALAADPPVILMDEP-FGAADPLTR------SRLQEEFLAIQRRLRK 111 LSGGE Q + +ARAL P +++MDEP G A L R SRL+EE L Sbjct: 139 TLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLASRLREE-------LGV 191 Query: 112 TVVFVTHDMGEAIRLGDRIILMREGRVVREAATEDL 147 T++ V ++G ++++ DR +M GR+V E A+++L Sbjct: 192 TILLVEQNVGLSLKVADRGYVMETGRIVLEGASDEL 227 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 56.2 bits (134), Expect = 7e-10 Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 5/117 (4%) Query: 40 ELLEMVGLPPEEYARKMPHQLSGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSRLQ 99 ELLE LP E + S G Q + + A + +P +++MDEP DPL R R+ Sbjct: 116 ELLEAFPLPLE----RAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVL 171 Query: 100 EEFLAIQRRLRKTVVFVTHDMGEAIRLGDRIILMREGRVVREAATEDLVRSGDGFVK 156 +F+ + R TV F +H + E R+ DR+ L+R G +V L+R VK Sbjct: 172 -DFVRSKAREGVTVFFSSHVLSEVQRVADRVGLLRSGVLVALEDVSSLLRKSGKVVK 227 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 55.8 bits (133), Expect = 9e-10 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 9/139 (6%) Query: 15 TVERNICTVPRLLGWPPEQQRARALELLEMVGLPPEEYARKMPHQLSGGEAQRVGVARAL 74 TV + T RL G + R RA+E+L +G+ E ++ +LS G QRV +ARA+ Sbjct: 93 TVREFVETSLRLRG--VTRARERAVEVLHTLGIRGEVLESRL-WELSMGMLQRVFIARAI 149 Query: 75 AADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTHDMGEAIRLGDRIILMR 134 A DP +++MDEP + DP R + + R + V+ +HD + D I+++ Sbjct: 150 APDPKMLVMDEPLASVDPAGRMEIARIIAGLAR--ERLVLMTSHDPSLLLGHTDIIVVIN 207 Query: 135 EGRVV----REAATEDLVR 149 + E ED++R Sbjct: 208 RDLIASGPPEEVYREDVLR 226 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 55.5 bits (132), Expect = 1e-09 Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 7/111 (6%) Query: 28 GWPPEQQRARALELLEMVGLPPEEYARKMPHQLSGGEAQRVGVARALAADPPVILMDEPF 87 G PP + R A+ L E +G+ E+ + +LS GE QRV +A ALA V+LMDEP Sbjct: 99 GLPPWEARREAVRLAEELGI--EDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPL 156 Query: 88 GAADPLTRSRLQEEFLAIQRRLR-KTVVFVTHDMGEAIRLGDRIILMREGR 137 DPL E + + RRL + VV H + + + L+ +GR Sbjct: 157 AYQDPLG----VESLIRLLRRLDVEGVVVAEHRVHYLLPAASSVYLVYDGR 203 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 55.5 bits (132), Expect = 1e-09 Identities = 30/91 (32%), Positives = 47/91 (51%) Query: 59 QLSGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTH 118 QLS G QR +A AL +P ++ DEP DPL R + + R +++ +H Sbjct: 130 QLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLNREHGLSLLVSSH 189 Query: 119 DMGEAIRLGDRIILMREGRVVREAATEDLVR 149 + E +R+ RI ++ GR+ E + EDL R Sbjct: 190 VIVELLRVATRIYVLAGGRLAAEGSPEDLFR 220 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 53.5 bits (127), Expect = 5e-09 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 3/128 (2%) Query: 33 QQRARALELLEMVGLPPEEYARKMPHQLSGGEAQRVGVARALAADPPVILMDEPFGAADP 92 + R RA +++++ L E+ L G ++V +A ALA +P V+LMDEP Sbjct: 125 EARERAEHVIDLLDL--HEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSK 182 Query: 93 LTRSRLQEEFLAIQRRLRKTVVFVTHDMGEAIRLGDRIILMREGRVVREAATEDLVRSGD 152 + + + + T+V + HDM + DR+++M G+V+ E + V + + Sbjct: 183 EEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHEAV-ADE 241 Query: 153 GFVKTFLG 160 K +LG Sbjct: 242 RVRKAYLG 249 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 53.1 bits (126), Expect = 6e-09 Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 2/115 (1%) Query: 36 ARALELLEMVGLPPEEYARKMPHQLSGGEAQRVGVARALAADPPVILMDEPFGAADPLTR 95 ARA E+L VGL + + +LSGG+ + + +ARA+ +I+MDEP +P Sbjct: 132 ARAFEILGWVGL--DHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVNPRLA 189 Query: 96 SRLQEEFLAIQRRLRKTVVFVTHDMGEAIRLGDRIILMREGRVVREAATEDLVRS 150 + E + R T + + H +G DR+ M G+V+ ++++ + Sbjct: 190 GSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEVLNN 244 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 52.8 bits (125), Expect = 8e-09 Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 5/135 (3%) Query: 1 MGYVIQHIGLFPHWTVERNIC-TVPRLLGWPPEQQRARALELLEMVGLPPEEYARKMPHQ 59 +GYV + + + P WT + T+ RL G+ + R RA E LE+VGL E + Sbjct: 79 IGYVPE-LPVVPLWTTPCILLETLARLEGYTSVEARVRAREALEVVGLAGE--CETPIGK 135 Query: 60 LSGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTHD 119 LS G +RV VA+A + ++++DEP+ DP R++E + R TV+ +H Sbjct: 136 LSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVARE-GATVIVSSHI 194 Query: 120 MGEAIRLGDRIILMR 134 + E + +++++ Sbjct: 195 LRELEDIATHVLVLK 209 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 52.0 bits (123), Expect = 1e-08 Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 4/129 (3%) Query: 33 QQRARALELLEMVGLPPEEYARKMPHQLSGGEAQRVGVARALAADPPVILMDEPFGAADP 92 + R RA+E ++MVGL +E + L+ E +R+ +ARALA P ++L+DE P Sbjct: 113 EARERAMEAIDMVGLAGKEDI--LAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRP 170 Query: 93 LTRSRLQEEFLAIQRRLRKTVVFVTHDMGEAIRLGDRIILMREGRVVREAATEDLVRSGD 152 L L I +R T++ V H M + +R+I++ G + E + V S Sbjct: 171 REVDDLVYTLLEISKR-GITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPRE-VASNK 228 Query: 153 GFVKTFLGS 161 ++ ++G+ Sbjct: 229 LVIEAYMGT 237 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 51.6 bits (122), Expect = 2e-08 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 5/145 (3%) Query: 3 YVIQHIGLFPHWTVERNICTVPRLLGWPPEQQRARALELLEMVGLPPEEYARKMPHQLSG 62 YV++ +F T E N+ +V G + R+ +L E K + LSG Sbjct: 89 YVMEGRRIFKELTTEENLVSVAYAAGASRDDIRS----VLSYFPRLKERLGEKAGN-LSG 143 Query: 63 GEAQRVGVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTHDMGE 122 GE Q + +A AL P ++++DEP P S++ + R T++ + + Sbjct: 144 GEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHREEGLTILLAEQNARK 203 Query: 123 AIRLGDRIILMREGRVVREAATEDL 147 A+ + D ++ GR+V E + E+L Sbjct: 204 ALEISDYGYVIENGRIVLEGSAEEL 228 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 48.9 bits (115), Expect = 1e-07 Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 5/149 (3%) Query: 1 MGYVIQHIGLFPHWTVERNICTVPRLL-GWPPEQQRARALELLEMVGLPPEEYARKMPHQ 59 +GY+ + ++ T NI RL GW ++ GL E+ AR+ Sbjct: 90 VGYLPEDASVYERLTGMENILFYARLYSGWRDVEELVENAVFYS--GLSREDLARRAGGY 147 Query: 60 LSGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTHD 119 S G +R+ + L + P ++++DEP DP+ +R+++ + R R ++ THD Sbjct: 148 -SKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSREGR-AILVTTHD 205 Query: 120 MGEAIRLGDRIILMREGRVVREAATEDLV 148 + A + DR+ ++ G V LV Sbjct: 206 LALAEEIADRVTIIHGGSTVASGPPYRLV 234 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 48.5 bits (114), Expect = 1e-07 Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 17/143 (11%) Query: 33 QQRARALELLEMVGL--PPEEYARKMPHQLSGGEAQRVGVARALAADPPVILMDEPFGAA 90 Q R E E +GL P+ Y +M E QR+ V +ALA +L+DEP Sbjct: 116 QARTMLAEASEALGLNIDPDRYLGEMGFS----ERQRLEVIKALALGSRAVLLDEPTTHL 171 Query: 91 DPLTRSRLQEEFLAIQRRLRKTVVFVTHDMGEAIRLGDRIILMREGRVVRE----AATED 146 P +R+ E + V+ VTH +GEA+ DR++++R+G V E ++TE+ Sbjct: 172 TPEEAARMLEAAGRLAAS-GAAVLLVTHRIGEAMEHADRLVILRKGVKVYEGPPPSSTEE 230 Query: 147 LVRSGDGFV------KTFLGSES 163 + + G V KTF + S Sbjct: 231 VAKLMFGEVLAPREPKTFTAATS 253 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 46.6 bits (109), Expect = 6e-07 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 8/116 (6%) Query: 35 RARALELLEMVGLPPEEYA-RKMPHQLSGGEAQRVGVARALAADPPVILMDEPFGAADPL 93 R AL+LL GL EYA + P+ LS GEA+ + V A++ P +++DEP D Sbjct: 80 RGEALKLLREAGL---EYASERSPYTLSMGEARILSVLMAISWGPEAVVIDEPTSGLDGS 136 Query: 94 TRSRLQEEFLAIQRRLRKTVVFVTHDMGEAIRLGDRIILMREGRVVREAATEDLVR 149 + L ++ RL V+ HD+ A + +++R+GRV E ++R Sbjct: 137 GKRWL----ASLIARLGVPVLVAGHDIDFAAAVAGWAVILRDGRVRVSGDMERVLR 188 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 45.8 bits (107), Expect = 1e-06 Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 12/162 (7%) Query: 34 QRARALELLEMVGLPPEEYARKMPHQLSGGEAQRVGVARALAADPPVILMDEPFGAADPL 93 +R ALEL E VGL ++ + QLSGGE Q++ + L+ D V + DEP D Sbjct: 197 ERGVALELAEQVGL--DKVFDRDVRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIR 254 Query: 94 TRSRLQEEFLAIQRRLRKTVVFVTHDMGEAIRLGDRI-ILMREGRVVREAATEDLVRSG- 151 R R+ +A R V+ V HD+ + D + IL E + R G Sbjct: 255 ERMRM-ARLIAGAARPGAYVMVVEHDLAVLDYVSDLVHILYGEPGAYGIVSKPYSTREGI 313 Query: 152 DGFVKTFLGSESVLLLLECHTMEEIARPAPSTIPEELPRVPG 193 + F++ +L +E++ L E + A PE P PG Sbjct: 314 NVFLQGYLPAENIRLRKEPILFRKPA-------PEAQPAAPG 348 Score = 43.9 bits (102), Expect = 4e-06 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Query: 39 LELLEMVGLPPEEYARKMPHQLSGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSRL 98 LEL++ + L ++ + LSGGE Q+V VA ALA + V L+DEP D R + Sbjct: 460 LELVKRMRL--DKLLERRVRTLSGGELQKVAVAAALAREADVYLLDEPSAYLDVEERVGV 517 Query: 99 QEEFLAIQRRLRKTVVFVTHDMGEAIRLGDRIILM 133 I + V HD+ + DRI+L+ Sbjct: 518 ARAIRRIVETREAAALVVEHDLMILDYVSDRIMLV 552 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 42.0 bits (97), Expect = 1e-05 Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 3/106 (2%) Query: 38 ALELLEMVGLPPEEYARKMPHQLSGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSR 97 A+E+L VGL + R +LS G+ +R +A LA P ++++DE DPLT R Sbjct: 544 AVEVLSSVGLGDAIFFRASFGELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLTARR 603 Query: 98 LQEEFLAIQRRLRKTVVFVTH--DMGEAIRLGDRIILMREGRVVRE 141 + + + R T++ T+ ++ +A++ D +IL+ G +E Sbjct: 604 IARKLGKLARSKGITLIVSTNRPEILDALQ-PDTVILVGYGSAFQE 648 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 41.6 bits (96), Expect = 2e-05 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 59 QLSGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTH 118 +LS G+ + V +A LA P + L+DEP D R+ ++ R R T+V+ TH Sbjct: 136 ELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRSL--RGRATIVYTTH 193 Query: 119 DMGEAIRLGDRIILMREGRVVREAATEDLV 148 D A+ D +I++REG + + E +V Sbjct: 194 DPLAAM-AADSVIMLREGLLHAQGPPEAVV 222 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 40.4 bits (93), Expect = 4e-05 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 10/114 (8%) Query: 37 RALELLEMVGLPPEEYARKMPHQLSGGEAQRVGVARALAADPPVILMDEPFGAADPLTRS 96 R E +GL E R++ SGGE +R + +A+ DP ++++DEP D + Sbjct: 124 RMYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLD-IDGL 182 Query: 97 RLQEEFLAIQRRLRKTVVFVTHDMGEAIRL-----GDRIILMREGRVVREAATE 145 ++ EF+ R + V+ +TH RL DR+ ++ G V+ E Sbjct: 183 KIVAEFIKQLRDSGRGVMLITH----YARLLNFVEPDRVTVLYRGSVLARGGAE 232 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 40.4 bits (93), Expect = 4e-05 Identities = 25/89 (28%), Positives = 42/89 (47%) Query: 61 SGGEAQRVGVARALAADPPVILMDEPFGAADPLTRSRLQEEFLAIQRRLRKTVVFVTHDM 120 S G +R+ VA LA P + ++DEP DP+ ++ R TV+ +H+M Sbjct: 139 SKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERHGVTVLLSSHNM 198 Query: 121 GEAIRLGDRIILMREGRVVREAATEDLVR 149 E + I ++ GR+V + + VR Sbjct: 199 YEVESVCSEITMISSGRIVYSGSPGEAVR 227 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 267,813 Number of Sequences: 1700 Number of extensions: 12589 Number of successful extensions: 117 Number of sequences better than 1.0e-04: 40 Number of HSP's better than 0.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 61 Number of HSP's gapped (non-prelim): 45 length of query: 237 length of database: 492,079 effective HSP length: 74 effective length of query: 163 effective length of database: 366,279 effective search space: 59703477 effective search space used: 59703477 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719472|ref|YP_003875004.1| transporter [Spirochaeta thermophila DSM 6192] (239 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 178,856 Number of Sequences: 1700 Number of extensions: 6645 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 239 length of database: 492,079 effective HSP length: 74 effective length of query: 165 effective length of database: 366,279 effective search space: 60436035 effective search space used: 60436035 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719473|ref|YP_003875005.1| hypothetical protein STHERM_c17970 [Spirochaeta thermophila DSM 6192] (423 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 431,834 Number of Sequences: 1700 Number of extensions: 18610 Number of successful extensions: 64 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 0 length of query: 423 length of database: 492,079 effective HSP length: 79 effective length of query: 344 effective length of database: 357,779 effective search space: 123075976 effective search space used: 123075976 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719474|ref|YP_003875006.1| aspartate ammonia-lyase AspA [Spirochaeta thermophila DSM 6192] (416 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431603|ref|NP_148185.2| fumarate hydratase [Aeropyrum pern... 152 1e-38 >gi|118431603|ref|NP_148185.2| fumarate hydratase [Aeropyrum pernix K1] Length = 444 Score = 152 bits (384), Expect = 1e-38 Identities = 112/355 (31%), Positives = 173/355 (48%), Gaps = 9/355 (2%) Query: 23 SLSRAVEEVKSGGLDDQFPLPLFQGGAGTSINMNVNEVIAARANELLEEEGCPERVDALD 82 ++ +A EV G D+ + +FQ G+GT +NMNVNEVIA RA+E+ + P D Sbjct: 51 AIMQAALEVAEGKHSDKIVVDVFQTGSGTGLNMNVNEVIAERASEIAGVDVHPN-----D 105 Query: 83 DVNRYQSTNDTFPTAVTIVLYWRLL-HLEQQVIRLQAALAEREGRYAHILMVGRTELQDA 141 VN QS+ND PTA+ + +L L + + +L E +YA ++ GRT L+DA Sbjct: 106 HVNMSQSSNDVIPTAIRLAAASAVLSELVPSLETIINSLGSAEAKYARVVKPGRTHLRDA 165 Query: 142 LPITLGQVFGSWAGMFERDRWRLHKIKERIRTVPLGGTAVGTGFPAPAMVVFAAEEALRR 201 LP+T GQ G++ F +D + + E + VPLGGTAVGTG A A L Sbjct: 166 LPVTFGQEMGAFKDAFSKDLAMVREALEAVLEVPLGGTAVGTGINAHPEYPRRAVSILAE 225 Query: 202 ITGLPLARSQNLPDEVAHQDKWSELAHGIRQVAENLVKLTGDL-LLYTSSFLG--ELGHP 258 TG+P+ + + + + L +R VA +L +L+ DL L+Y+ F G E+ P Sbjct: 226 KTGIPVKPAASRFRAMRLVTDLAMLTAAVRSVAIDLWRLSQDLRLMYSGPFTGIAEVEIP 285 Query: 259 EVQAGSTIMAAKTNPVFLEYARGLAFSAQHACDAVSTLSQQGQLQLNPYLPFILHHLLQA 318 + GS++M K NPV LE A A A ++ S G+ +L+ LP + ++ Sbjct: 286 QEVPGSSMMPGKVNPVTLEAAMQAASYAIALDSSLVQASLLGEFELSMGLPLAGYAAVRQ 345 Query: 319 FTMVGTALETLTERLLPALEVREDRIXXXXXXXXXXXXXXXXXXGYHGVKELYRL 373 +V AL ++ +E R +R+ GY E+ R+ Sbjct: 346 AEIVAEALRKTAGLVIGRVEPRVERMRELAERSQALITLVAPIIGYEKAAEVSRM 400 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 390,745 Number of Sequences: 1700 Number of extensions: 15808 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 1 length of query: 416 length of database: 492,079 effective HSP length: 79 effective length of query: 337 effective length of database: 357,779 effective search space: 120571523 effective search space used: 120571523 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719475|ref|YP_003875007.1| hypothetical protein STHERM_c17990 [Spirochaeta thermophila DSM 6192] (363 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430954|ref|NP_147081.2| hypothetical protein APE_0249.1 [A... 54 5e-09 >gi|118430954|ref|NP_147081.2| hypothetical protein APE_0249.1 [Aeropyrum pernix K1] Length = 382 Score = 54.3 bits (129), Expect = 5e-09 Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 4/122 (3%) Query: 21 AEARKAVEEWWRMPLPLLVKEADRVCRRVHGD--GVYLRGLLEFSNYCRKDCLYCGIRRS 78 A AR VE + P PLL A RV + G G + ++ ++N C C +C R Sbjct: 37 ASARDIVE-LYSAPAPLLGAVARRVTDLLTGRRVGYIVNMIMNYTNICVVGCTFCSFYRK 95 Query: 79 NRKVRRYRLDEEVILAVVREAFAR-GFRTFVLQSGEDPAWPAERLARLVERVKQETRGEA 137 + Y+L+ A V EA+ + R + Q G DPA P E +K ET GE Sbjct: 96 PKHPEAYKLEAREAAAQVVEAWRKYRIRQVLFQGGVDPAIPIEYYEEAFRAIKSETGGEV 155 Query: 138 AV 139 A+ Sbjct: 156 AI 157 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 389,168 Number of Sequences: 1700 Number of extensions: 17603 Number of successful extensions: 77 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 76 Number of HSP's gapped (non-prelim): 1 length of query: 363 length of database: 492,079 effective HSP length: 78 effective length of query: 285 effective length of database: 359,479 effective search space: 102451515 effective search space used: 102451515 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719476|ref|YP_003875008.1| hypothetical protein STHERM_c18000 [Spirochaeta thermophila DSM 6192] (470 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 453,597 Number of Sequences: 1700 Number of extensions: 19538 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 470 length of database: 492,079 effective HSP length: 80 effective length of query: 390 effective length of database: 356,079 effective search space: 138870810 effective search space used: 138870810 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719477|ref|YP_003875009.1| CopG family transcriptional regulator [Spirochaeta thermophila DSM 6192] (83 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.144 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,001 Number of Sequences: 1700 Number of extensions: 3459 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 83 length of database: 492,079 effective HSP length: 53 effective length of query: 30 effective length of database: 401,979 effective search space: 12059370 effective search space used: 12059370 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719478|ref|YP_003875010.1| histone deacetylase superfamily protein [Spirochaeta thermophila DSM 6192] (341 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602183|ref|NP_146957.1| hypothetical protein APE_0092.1 [Ae... 40 6e-05 >gi|14602183|ref|NP_146957.1| hypothetical protein APE_0092.1 [Aeropyrum pernix K1] Length = 366 Score = 40.4 bits (93), Expect = 6e-05 Identities = 38/173 (21%), Positives = 60/173 (34%), Gaps = 26/173 (15%) Query: 154 CVINDVVIALRRLMAEGRIRRAWVVDVDVHKGDGTAALTKDDPSIATLSIHMAAGWPLSL 213 C++N + R L +G+ ++D D+H G+GT + DDP + + +H Sbjct: 140 CIVNTAALIARMLSEQGK---TVILDFDLHHGNGTQEIFYDDPDVYHVDVHQD------- 189 Query: 214 PSTLPDGRPHPSHIPS--------TVEIPVARGEEARYXXXXXXXXXXXXXXXPHPDLAV 265 P+T+ G P I + +P G++ PD V Sbjct: 190 PTTIYPGTGFPEDIGEGDAKGTKINIILPPNSGDDIYVSAARLALGILERL---EPDYIV 246 Query: 266 VVWGADPYEKDXXXXXXXXXXXXXXXFERDLLLWEFMRAREVPAAFLMAGGYG 318 V G D Y D L+ E R A ++ GGYG Sbjct: 247 VSAGFDAYRGDNAFTVMRGGTAMYY-----LIGSELSRMARRGVAAVLEGGYG 294 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 335,543 Number of Sequences: 1700 Number of extensions: 14110 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 1 length of query: 341 length of database: 492,079 effective HSP length: 77 effective length of query: 264 effective length of database: 361,179 effective search space: 95351256 effective search space used: 95351256 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719479|ref|YP_003875011.1| automatic annotation [Spirochaeta thermophila DSM 6192] (144 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431490|ref|NP_147996.2| hypothetical protein APE_1520.1 [A... 92 4e-21 >gi|118431490|ref|NP_147996.2| hypothetical protein APE_1520.1 [Aeropyrum pernix K1] Length = 136 Score = 92.4 bits (228), Expect = 4e-21 Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 3/122 (2%) Query: 10 LSTHRREELVDITREVEEVVARSGVRSGLCNVYVQGATAGIMIQENWDDSVQEDALDLLR 69 + T RR +++D+T +VEE ++ G +GL VYV TA + + E + + ED ++ +R Sbjct: 10 VKTERRLQVLDVTGKVEEWLSTVGGVNGLLVVYVPHTTAAVAVNEA-EPRLMEDIVEFIR 68 Query: 70 RLI-PRGVWRHDRQDGNGDAHLKSGLVGPSETIPVIDGRLGLSTWQNIFLCEFDGPRAER 128 L P G W+H+ D N AHL + ++G S IPV+ GRL L TWQ I E DGPR ER Sbjct: 69 ELTKPGGPWKHNLVDVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILFVEMDGPR-ER 127 Query: 129 RV 130 V Sbjct: 128 TV 129 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 158,902 Number of Sequences: 1700 Number of extensions: 7320 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 1 length of query: 144 length of database: 492,079 effective HSP length: 69 effective length of query: 75 effective length of database: 374,779 effective search space: 28108425 effective search space used: 28108425 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719480|ref|YP_003875012.1| hypothetical protein STHERM_c18040 [Spirochaeta thermophila DSM 6192] (294 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 359,751 Number of Sequences: 1700 Number of extensions: 17567 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 294 length of database: 492,079 effective HSP length: 76 effective length of query: 218 effective length of database: 362,879 effective search space: 79107622 effective search space used: 79107622 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719481|ref|YP_003875013.1| hypothetical protein STHERM_c18050 [Spirochaeta thermophila DSM 6192] (588 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431092|ref|NP_147302.2| Xaa-Pro dipeptidase [Aeropyrum per... 59 4e-10 >gi|118431092|ref|NP_147302.2| Xaa-Pro dipeptidase [Aeropyrum pernix K1] Length = 373 Score = 58.5 bits (140), Expect = 4e-10 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 6/165 (3%) Query: 357 SFAPIVGFGPNGAVVHYNPARMAPARVEGEGLLLVDSGAHYRWGSTDITRVFCKGTPTEA 416 SF IV FG N A+ H++ AR+ +L D G+ Y+ +D+TR +G Sbjct: 203 SFPVIVAFGGNTALPHHHTG---DARLPHASPVLFDLGSVYKGYMSDMTRSLWRGPGGAE 259 Query: 417 QCRDYTLVLKAHIALASLAFPAGLSGLHLDAVARGVLARXXXXXXXXXXXXXXXXXXXXX 476 R LV +A P G+ +D AR L++ Sbjct: 260 YRRLEELVAEAQAEAIDSVAP-GVEAWEVDKAARLRLSKEGFSKYFIHGTGHGVGVEIHE 318 Query: 477 XPVSFRPDGAPFPLEEGMILSVEPGVYRTGKWGIRLENLVWVEER 521 P RP G+ L+ GM++++EPGVY G +G+R+E++V V +R Sbjct: 319 NPY-LRP-GSSEELKPGMVVTIEPGVYLPGMYGVRIEDMVLVTKR 361 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.142 0.465 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 684,166 Number of Sequences: 1700 Number of extensions: 34776 Number of successful extensions: 123 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 121 Number of HSP's gapped (non-prelim): 2 length of query: 588 length of database: 492,079 effective HSP length: 82 effective length of query: 506 effective length of database: 352,679 effective search space: 178455574 effective search space used: 178455574 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719482|ref|YP_003875014.1| hypothetical protein STHERM_c18060 [Spirochaeta thermophila DSM 6192] (822 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 924,617 Number of Sequences: 1700 Number of extensions: 45022 Number of successful extensions: 115 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115 Number of HSP's gapped (non-prelim): 0 length of query: 822 length of database: 492,079 effective HSP length: 85 effective length of query: 737 effective length of database: 347,579 effective search space: 256165723 effective search space used: 256165723 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719483|ref|YP_003875015.1| hypothetical protein STHERM_c18070 [Spirochaeta thermophila DSM 6192] (121 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.144 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 155,482 Number of Sequences: 1700 Number of extensions: 7715 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 121 length of database: 492,079 effective HSP length: 67 effective length of query: 54 effective length of database: 378,179 effective search space: 20421666 effective search space used: 20421666 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719484|ref|YP_003875016.1| aminopeptidase [Spirochaeta thermophila DSM 6192] (427 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.143 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 438,197 Number of Sequences: 1700 Number of extensions: 18679 Number of successful extensions: 70 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 0 length of query: 427 length of database: 492,079 effective HSP length: 79 effective length of query: 348 effective length of database: 357,779 effective search space: 124507092 effective search space used: 124507092 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719485|ref|YP_003875017.1| hypothetical protein STHERM_c18090 [Spirochaeta thermophila DSM 6192] (205 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.138 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 200,021 Number of Sequences: 1700 Number of extensions: 8590 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 0 length of query: 205 length of database: 492,079 effective HSP length: 73 effective length of query: 132 effective length of database: 367,979 effective search space: 48573228 effective search space used: 48573228 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719486|ref|YP_003875018.1| estradiol 17-beta-dehydrogenase 12 [Spirochaeta thermophila DSM 6192] (279 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum... 84 4e-18 gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] 58 2e-10 gi|118431423|ref|NP_147894.2| oxidoreductase [Aeropyrum pernix K1] 46 1e-06 >gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum pernix K1] Length = 250 Score = 84.0 bits (206), Expect = 4e-18 Identities = 62/191 (32%), Positives = 100/191 (52%), Gaps = 11/191 (5%) Query: 3 YALVTGASRGLGRAFAEELAKRGFDLLLVSLPGERLPQ-VADSLRR-----RYGIDVDAL 56 YALVTG SRG+GRA A+ G+ +++ L + A+ RR Y + VD Sbjct: 5 YALVTGGSRGIGRATVLRFAREGWSVVIAYKSRADLAEKTAEEARRLGSPEAYTVRVDVG 64 Query: 57 EGDITCSETRARIRRILSRYGHLSVAVNNAGYGHPGPFDVWDVEEWEVMLRLNVEATSAL 116 + D + +E +R+ ++ HL+V VN AG G + + EWE LR+N+ + Sbjct: 65 DPD-SVTEMSSRVGELIP---HLNVLVNAAGVLQLGGIEETSISEWEETLRVNLTGVYLV 120 Query: 117 SHLVVPFLERGRPSFLLNVASLAGFFPMPFFGV-YASSKSYVLHFTLALREELKTKGITV 175 + L++P L + + + ++NVAS+AG GV Y++SK+ V+ T L +L GI V Sbjct: 121 TKLLLPLLRKAKWASIVNVASIAGETGNVVAGVAYSASKAGVIGLTKRLAVQLAGYGIRV 180 Query: 176 GVLCPGGVLTN 186 + P V T+ Sbjct: 181 NAVAPSFVETD 191 >gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] Length = 260 Score = 58.2 bits (139), Expect = 2e-10 Identities = 55/195 (28%), Positives = 81/195 (41%), Gaps = 2/195 (1%) Query: 4 ALVTGASRGLGRAFAEELAKRGFDLLLVSLPGERLPQVADSLRRRY-GIDVDALEGDITC 62 A+VT S GLG A A ELA+ G LLL S E+L A + G VD + GDI Sbjct: 10 AVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIRE 69 Query: 63 SETRARIRRILSRYGHLSVAVNNAGYGHPGPFDVWDVEEWEVMLRLNVEATSALSHLVVP 122 R+ G + V + G PG F VE+W+ RL + + Sbjct: 70 PGDIDRLFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAE 129 Query: 123 FLERGRPSFLLNVASLAGFFPMPFFGVYASSKSYVLHFTLALREELKTKGITVGVLCPGG 182 + ++ + S+ P + + V+ L EL G+TV + P Sbjct: 130 QMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSL 189 Query: 183 VLTN-ARSIEEVRAQ 196 +LT+ RS+ E RA+ Sbjct: 190 ILTDRVRSLAEERAR 204 >gi|118431423|ref|NP_147894.2| oxidoreductase [Aeropyrum pernix K1] Length = 260 Score = 45.8 bits (107), Expect = 1e-06 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 11/87 (12%) Query: 5 LVTGASRGLGRAFAEELAKRGFDLLLVSLPGERLPQVADSLRRRYGIDVDALEGD----- 59 LV G SRGLG A LA G +L++V+ E L + A + +G+DV+ L GD Sbjct: 8 LVLGGSRGLGFHAARALASLGCNLVIVARGREALEKSAKEISEGFGVDVEPLVGDLRKKG 67 Query: 60 ------ITCSETRARIRRILSRYGHLS 80 I +T R+ +++ YG++S Sbjct: 68 HVENAVIHAVQTFGRVDAVVAAYGNIS 94 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.140 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 305,439 Number of Sequences: 1700 Number of extensions: 13756 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 3 length of query: 279 length of database: 492,079 effective HSP length: 76 effective length of query: 203 effective length of database: 362,879 effective search space: 73664437 effective search space used: 73664437 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719487|ref|YP_003875019.1| retinol dehydrogenase 14 [Spirochaeta thermophila DSM 6192] (289 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum... 41 3e-05 >gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum pernix K1] Length = 250 Score = 41.2 bits (95), Expect = 3e-05 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 3/93 (3%) Query: 1 MDARYALVTGATGGIGRHLVWELLERGWTVAGTARNRTRSTELIAWLESQGVETSRLTMY 60 M+ YALVTG + GIGR V GW+V ++R E A E++ + + Sbjct: 1 METTYALVTGGSRGIGRATVLRFAREGWSVVIAYKSRADLAEKTA-EEARRLGSPEAYTV 59 Query: 61 EVDLASQEAIRRWAGEFSP--PSLDLLIHNAGI 91 VD+ +++ + P L++L++ AG+ Sbjct: 60 RVDVGDPDSVTEMSSRVGELIPHLNVLVNAAGV 92 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 295,951 Number of Sequences: 1700 Number of extensions: 12522 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 1 length of query: 289 length of database: 492,079 effective HSP length: 76 effective length of query: 213 effective length of database: 362,879 effective search space: 77293227 effective search space used: 77293227 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719488|ref|YP_003875020.1| hypothetical protein STHERM_c18120 [Spirochaeta thermophila DSM 6192] (145 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.134 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 139,253 Number of Sequences: 1700 Number of extensions: 5641 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 145 length of database: 492,079 effective HSP length: 69 effective length of query: 76 effective length of database: 374,779 effective search space: 28483204 effective search space used: 28483204 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719489|ref|YP_003875021.1| transporter [Spirochaeta thermophila DSM 6192] (229 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 176 3e-46 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 125 9e-31 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 125 1e-30 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 123 3e-30 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 121 2e-29 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 119 6e-29 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 119 8e-29 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 114 2e-27 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 107 3e-25 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 106 6e-25 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 105 7e-25 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 105 1e-24 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 105 1e-24 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 104 2e-24 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 100 2e-23 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 100 4e-23 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 99 9e-23 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 98 2e-22 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 97 3e-22 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 97 3e-22 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 97 3e-22 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 97 5e-22 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 90 6e-20 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 89 7e-20 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 89 9e-20 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 88 2e-19 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 83 5e-18 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 82 1e-17 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 81 2e-17 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 80 3e-17 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 80 4e-17 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 80 4e-17 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 80 4e-17 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 78 2e-16 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 75 2e-15 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 69 1e-13 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 67 5e-13 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 66 7e-13 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 66 9e-13 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 55 2e-09 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 54 3e-09 gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad5... 44 3e-06 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 176 bits (447), Expect = 3e-46 Identities = 93/202 (46%), Positives = 131/202 (64%), Gaps = 1/202 (0%) Query: 17 IDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILDGSKTASLSEHER 76 I AL +SL V GE LAIMGPSG+GKTTLLNI+A +D P +G I+DG + +S E Sbjct: 27 IVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGEEL 86 Query: 77 AVLRREKIGLVFQQFHLVPYLTALENVMVAQYYHSMADRREAEAVLRKVGLGERLSHRPS 136 R E++G VFQQ +L+P LTALEN+++ A+R + +LR+VGLG + P Sbjct: 87 RRFRLERVGYVFQQHNLIPTLTALENILLPMALAGKANRLRGQELLRRVGLGGKERRYPE 146 Query: 137 QLSGGEKQRVCIARALVNEPALLLADEPTGNLD-ERNEGIVLDLFRALKREGRTIIMVTH 195 +LSGGE+QR+ +A AL N+P +++ADEPTG LD E IV L G+T+++ TH Sbjct: 147 ELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEAHSRGKTVVLTTH 206 Query: 196 NPNLAKEADRIVYLNHGRISPV 217 +P +A+ ADR+ + GR+ V Sbjct: 207 DPRVARMADRVAVIEDGRLRGV 228 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 125 bits (314), Expect = 9e-31 Identities = 82/218 (37%), Positives = 121/218 (55%), Gaps = 8/218 (3%) Query: 1 MRCVLELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGE 60 M +LE++ + SY L + + + GE L IMGPSG+GK+TLL + L P SG Sbjct: 1 MARLLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGS 60 Query: 61 YILDGSKTASLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMVAQYYHSMADRREAEA 120 + G LS + ++RR KIG + Q + L P++T L N+ RR+AE Sbjct: 61 IVFRGVDVTRLSGSQLRMVRR-KIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAEE 119 Query: 121 ----VLRKVGLGERLSHR-PSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGI 175 L +G+ E L+HR P++LSGG++QR +ARAL EP +LL DEPT LD + Sbjct: 120 RAVKYLSMLGI-EDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRAD 178 Query: 176 VLDLFRALKREGRTIIMVTHNPNLA-KEADRIVYLNHG 212 VL+ + G+ +I+VTH + A K ADR+ ++ G Sbjct: 179 VLEALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDG 216 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 125 bits (313), Expect = 1e-30 Identities = 92/255 (36%), Positives = 143/255 (56%), Gaps = 29/255 (11%) Query: 4 VLELKDITRSY----GSIDALDRLSLRVEEGEWLAIMGPSGAGKTTL-LNILALLDTP-- 56 VL+++D+ Y G + A+D +SL V +GEW++I+G SG+GK+TL L+I L+ P Sbjct: 3 VLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGR 62 Query: 57 -TSGEYILDGSKTASLSEHERAVLRREKIGLVFQQ--FHLVPYLTALENVMVAQYYHSMA 113 G + G SL+ E R +IG+VFQ +L PY T + + H +A Sbjct: 63 IVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLA 122 Query: 114 DR-REAEAV----LRKVGLG-ERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGN 167 EAE++ L VG+ +R S P QLSGG++QRV IA A+ EP +L+ADEPT Sbjct: 123 SSGSEAESMAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTA 182 Query: 168 LDERNEGIVLDLFRALKRE-GRTIIMVTHNPNLAKE-ADRIVYLNHGRI----------- 214 LD + ++DL + L+ E G T+++VTH+ LA E +DRI + G + Sbjct: 183 LDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDVVS 242 Query: 215 SPVNPFVEEVVDARP 229 +P++P+ E ++ + P Sbjct: 243 NPIHPYTEMLIKSVP 257 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 123 bits (309), Expect = 3e-30 Identities = 74/223 (33%), Positives = 114/223 (51%), Gaps = 11/223 (4%) Query: 5 LELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILD 64 + L+ +T+ +G+ ALDR+SL + +GE ++GPSG GKTT L ++A +TP G + Sbjct: 4 IRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIG 63 Query: 65 GSKTASLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMVAQYYHSMADR---REAEAV 121 L +ER +VFQ + L P++ +N+ + R Sbjct: 64 SRDVTMLKPYER------NTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWA 117 Query: 122 LRKVGLGERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDER-NEGIVLDLF 180 + + L P QLSGG++QRV +ARA+V EP +LL DEP NLD + ++ Sbjct: 118 AELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIV 177 Query: 181 RALKREGRTIIMVTHNPNLAKE-ADRIVYLNHGRISPVNPFVE 222 R KR G TI+ VTH+ A + R+ +N GR+ V +E Sbjct: 178 RLQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPME 220 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 121 bits (303), Expect = 2e-29 Identities = 77/218 (35%), Positives = 127/218 (58%), Gaps = 11/218 (5%) Query: 5 LELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILD 64 ++L+ + + +G++ A+ ++L +E+ E+++I+GPSG+GKTTLL ++A + P+ G + Sbjct: 4 VKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFN 63 Query: 65 GSKTASLSEHERAVLRREKIGLVFQQFHLVPYLTALENV---MVAQYYHSMADRREAEAV 121 L ++R IGLVFQ + L P++T EN+ + + + A + + +V Sbjct: 64 DVDVTDLPPNKR------NIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSV 117 Query: 122 LRKVGLGERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVLDLFR 181 + +G+ L P+QLSGG++QRV +ARALV EP +LL DEP NLD + + Sbjct: 118 AKLLGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELK 177 Query: 182 ALKRE-GRTIIMVTHNPNLA-KEADRIVYLNHGRISPV 217 L++E G T I VTH+ + A ADRI + G I V Sbjct: 178 KLQKELGITAIYVTHDQSEALAMADRIAIIASGVIQQV 215 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 119 bits (298), Expect = 6e-29 Identities = 80/218 (36%), Positives = 118/218 (54%), Gaps = 14/218 (6%) Query: 5 LELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILD 64 + L ++ SYG ++AL +S E A++GPSG GKTT+L ++A L P G Sbjct: 6 VRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFG 65 Query: 65 GSKTASLSEHERAVLRREKIGLVFQQFHLVPYLTALENV---MVAQYYHSMADRREAEAV 121 G L R+V G VFQ L P++T +NV + A+ + RR+ E Sbjct: 66 GVDYTGLPPERRSV------GFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWA 119 Query: 122 LRKVGL---GERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDER-NEGIVL 177 L VGL E + R + LSGG++QRV +ARA+ EP +LL DEP +LD + + ++ Sbjct: 120 LETVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLA 179 Query: 178 DLFRALKREGRTIIMVTHNPNLAKE-ADRIVYLNHGRI 214 +L R ++ G T+I VTH+ A E AD +V + GRI Sbjct: 180 ELKRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRI 217 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 119 bits (297), Expect = 8e-29 Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 17/234 (7%) Query: 5 LELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILD 64 + L+ + + +G + A+D + L +++GE+ ++GPSG GKTT L ++A L+ P G ++D Sbjct: 4 IRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILID 63 Query: 65 GSKTASLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMVAQYYHSMA-------DRRE 117 G +R + +VFQ + L P+++ +N+ + RR Sbjct: 64 GEDVTFKDPKDR------NVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRR 117 Query: 118 AEAVLRKVGLGERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVL 177 V + + + + L +P QLSGG++QRV +ARALV P + L DEP NLD + Sbjct: 118 VIEVAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMR 177 Query: 178 DLFRALKREGR-TIIMVTHNPNLAKE-ADRIVYLNHGRISPVNPFVEEVVDARP 229 + L+++ + T + VTH+ A ADRI +N GR+ V E V RP Sbjct: 178 AELKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVG--TPEEVYMRP 229 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 114 bits (285), Expect = 2e-27 Identities = 75/222 (33%), Positives = 115/222 (51%), Gaps = 19/222 (8%) Query: 5 LELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILD 64 + L+ I + +G AL + L +++GE + ++GPSG GKTT L I+A L+ P +G D Sbjct: 4 VRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFD 63 Query: 65 GSKTASLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMVAQYYHSMADRREAEAVLRK 124 G L +R + +VFQ + L P++ +N+ + + + ++R+ Sbjct: 64 GRDVTGLPPKDR------NVAMVFQSYALWPHMRVFDNIA----FPLKIKKLPRDEIVRR 113 Query: 125 V-------GLGERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVL 177 V + L P QLSGG++QRV +ARA+V EP +LL DEP NLD + Sbjct: 114 VRWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMR 173 Query: 178 DLFRALKRE-GRTIIMVTHNPNLAKE-ADRIVYLNHGRISPV 217 + L+R G T+I VTH+ A DRIV +N G I V Sbjct: 174 SEIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQV 215 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 107 bits (267), Expect = 3e-25 Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 26/232 (11%) Query: 4 VLELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYIL 63 +L ++D+ + +G I ALD+++L +E G+ ++GP+G+GKTTL+N+++ P G + Sbjct: 6 ILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLF 65 Query: 64 DGSKTASLSEHERAVLRREKIGLV--FQQFHLVPYLTALENVMVAQ-------YYHSMAD 114 G +S HE + K+GLV FQ LT LENV+ A Y +A Sbjct: 66 KGRDITGMSPHEIS-----KLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLAR 120 Query: 115 R----------REAEAVLRKVGLGERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEP 164 R A +L VGL R +LSGG+ + + IARA++ +++ DEP Sbjct: 121 RLWLGFEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEP 180 Query: 165 TGNLDERNEGIVLDLFRALKRE-GRTIIMVTHNPNLAKE-ADRIVYLNHGRI 214 ++ R G +++ + L RE G T +++ H L KE DR+ ++ G++ Sbjct: 181 AAGVNPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKV 232 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 106 bits (264), Expect = 6e-25 Identities = 83/237 (35%), Positives = 122/237 (51%), Gaps = 27/237 (11%) Query: 17 IDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILDGSKTASLSEHER 76 + A+D + L + EGE LAI+G SG GKTTL + ++ P+ G G L+ H Sbjct: 35 VRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGEL---LTPHRL 91 Query: 77 AVLRR--EKIGLVFQQFH--LVPYLTALENVMVAQYYHSMAD----RREAEAVLRKVGLG 128 A RR K+ +VFQ + L P + + V H +A RR A +L VGL Sbjct: 92 ARDRRLRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETVGLT 151 Query: 129 ---ERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVLDLFRAL-K 184 E +P QLSGG++QRV IAR LV EP +++ADEP +D +LDL + Sbjct: 152 PGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHR 211 Query: 185 REGRTIIMVTHNPNLAKE-ADRIVYLNHGRI-----------SPVNPFVEEVVDARP 229 R G TI+++TH+ +A+ ADRI + G+I +P +P+ +V + P Sbjct: 212 RTGATIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVIENPRHPYTAALVTSTP 268 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 105 bits (263), Expect = 7e-25 Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 16/223 (7%) Query: 20 LDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILDGS---KTASLSEHER 76 L +S + + G AIMGPSG+GK+TL+ ++ L G + +G ++ + + Sbjct: 21 LKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARV-EGEVWINNMNVMKEDP 79 Query: 77 AVLRREKIGLVFQQFHLVPYLTALENVMVAQYYHSMADRRE-----AEAVLRKVGLGE-- 129 +RR G+VFQ+ + P++T ENV + H +A ++ E L+ L + Sbjct: 80 YNIRRYT-GMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEIVEWALKMAHLWDEV 138 Query: 130 --RLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDE-RNEGIVLDLFRALKRE 186 RLS P QLSGG++QR+ +ARAL +P +LL DEPT N+D I + K E Sbjct: 139 KDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKEE 198 Query: 187 GRTIIMVTHNP-NLAKEADRIVYLNHGRISPVNPFVEEVVDAR 228 T+I+VTH P A+ +D+I++L GR+ P E V+ R Sbjct: 199 MATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELVLRPR 241 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 105 bits (262), Expect = 1e-24 Identities = 79/219 (36%), Positives = 120/219 (54%), Gaps = 14/219 (6%) Query: 15 GSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLL-NILALLDTP---TSGEYILDGSKTAS 70 G + A+D +S + GE L I G SG+GK+TL +IL L+ P G ++DG S Sbjct: 20 GIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTS 79 Query: 71 LSEHE-RAVLRREKIGLVFQQFH--LVPYLTALENVMVAQYYHSMADRREAEA----VLR 123 +SE E R +R +K+ +VFQ L P T + H R EA +L Sbjct: 80 MSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELLE 139 Query: 124 KVGLGERLSHR-PSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVLDLFRA 182 VGL ++ R P +LSGG+KQRV IA AL EP +++ADEPT LD + +L+L + Sbjct: 140 SVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLKK 199 Query: 183 LKRE-GRTIIMVTHNPN-LAKEADRIVYLNHGRISPVNP 219 L E +II++TH+ + +A+ A+ ++ + G+I+ P Sbjct: 200 LAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEYGP 238 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 105 bits (262), Expect = 1e-24 Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 12/225 (5%) Query: 4 VLELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYIL 63 +++L+D++ YG + L +SL + G I+GP+GAGK+TLL + T G + Sbjct: 5 IIKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLF 64 Query: 64 DGSKTASLSEHERAVLRREKIGL--VFQQFHLVPYLTALENVMVAQY---YHSMADRREA 118 + + + H+RA KIG+ +FQ ++ LT EN+ +A Y DR E Sbjct: 65 ENTDVTHMPPHDRA-----KIGMTFIFQLENIFRELTVYENLRLAGYDLPEDVFRDRLE- 118 Query: 119 EAVLRKVGLGERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVLD 178 E L ERL + LSGGE+Q + +A ++ +P + L DEPT L + VL Sbjct: 119 EVFSMFPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLS 178 Query: 179 LFRALKREGRTIIMVTHNPNLAKE-ADRIVYLNHGRISPVNPFVE 222 R L +EG T+++V N + E D+ V + +GRI+ P E Sbjct: 179 YVRILNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDGPAEE 223 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 104 bits (260), Expect = 2e-24 Identities = 74/209 (35%), Positives = 111/209 (53%), Gaps = 10/209 (4%) Query: 16 SIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILDGSKTASLSEHE 75 +I ALD + L+V G +++GP+GAGKTTL+ IL+ L P SG ++ A Sbjct: 25 TIRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSG-----WARVAGFDVVR 79 Query: 76 RAVLRREKIGLVFQQFHLVPY-LTALENVMVAQYYHSMADR---REAEAVLRKVGLGERL 131 A R +IG+V + + L+ +N+ + + R R + +L VGL E Sbjct: 80 EANNVRSRIGVVLGGERALYWRLSGWDNLWFFSQLYGIPPREAKRRVKELLEIVGLEEWA 139 Query: 132 SHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVLDLFRALKREGRTII 191 R S G KQR+ IAR L+N+P +LL DEPT LD + V + R + REGRT++ Sbjct: 140 HVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVL 199 Query: 192 MVTHNPNLAKE-ADRIVYLNHGRISPVNP 219 + TH A+E +DR+ ++ GRI P Sbjct: 200 LTTHYMVEAEELSDRVAIISKGRIVAEGP 228 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 100 bits (250), Expect = 2e-23 Identities = 72/245 (29%), Positives = 114/245 (46%), Gaps = 23/245 (9%) Query: 4 VLELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYIL 63 +L ++IT +G + ALD +S+ V GE L I+GP+GAGKT+LLN++ + P G Sbjct: 1 MLWTENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYF 60 Query: 64 DGSKTASLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMVAQYYHSMAD--------- 114 G L H+R L + FQ L +T LEN+MV + + Sbjct: 61 KGRDITGLKPHQRITL---GLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAF 117 Query: 115 ---------RREAEAVLRKVGLGERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPT 165 R AE V+ + L E L G +++V +A AL P ++L DEP Sbjct: 118 RAKRWEVEARERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPM 177 Query: 166 GNLD-ERNEGIVLDLFRALKREGRTIIMVTHNPNLAKE-ADRIVYLNHGRISPVNPFVEE 223 L E E IV + + T++++ H+ + + DR+V +++G++ P E Sbjct: 178 AGLSKEEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHEA 237 Query: 224 VVDAR 228 V D R Sbjct: 238 VADER 242 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 100 bits (248), Expect = 4e-23 Identities = 70/211 (33%), Positives = 109/211 (51%), Gaps = 9/211 (4%) Query: 8 KDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILDGSK 67 +++ + YG A+D +S R+ GE +++GP+GAGKTT + +L+ L PTSGE + G Sbjct: 10 EELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWIAGYS 69 Query: 68 TASLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMV-AQYY--HSMADRREAEAVLRK 124 + R V IGLV Q ++ +NV + A+ Y S R VL Sbjct: 70 IVREPGNVRRV-----IGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEARERTREVLDY 124 Query: 125 VGLGERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVLDLFRALK 184 + L E R + SGG ++++ IA +LV+ P +L DEPT LD + + LK Sbjct: 125 LDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLK 184 Query: 185 REGRTIIMVTHNPNLAKE-ADRIVYLNHGRI 214 R TI++ TH A+ +DR+ ++ GRI Sbjct: 185 RSAVTILLTTHYMEEAEMLSDRVAIIDRGRI 215 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 99.0 bits (245), Expect = 9e-23 Identities = 75/217 (34%), Positives = 109/217 (50%), Gaps = 9/217 (4%) Query: 1 MRCVLELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGE 60 M VLE + + + Y LDR+ L V GE + ++GP+GAGKTTL+ + L G Sbjct: 1 MDTVLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGR 60 Query: 61 YILDGSKTASLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMVAQYYHSMADRREAEA 120 +L+G + R RE +G+VF++ +L + +E + A + R + Sbjct: 61 VLLNGL------DPWREPRAREGVGVVFERPNLPSSMPVVEFLESAAAIIGSSPSR-VDW 113 Query: 121 VLRKVGLGERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVLDLF 180 +R GL QLS G KQR IA AL+ EP L+ADEPT NLD VL L Sbjct: 114 AIRAAGLEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLL 173 Query: 181 RALKRE-GRTIIMVTH-NPNLAKEADRIVYLNHGRIS 215 L RE G ++++ +H L + A RI L GR++ Sbjct: 174 ARLNREHGLSLLVSSHVIVELLRVATRIYVLAGGRLA 210 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 98.2 bits (243), Expect = 2e-22 Identities = 80/236 (33%), Positives = 124/236 (52%), Gaps = 24/236 (10%) Query: 4 VLELKDITRSY----GSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTS- 58 VL ++D+T +Y G ++ALD + L V +GE LAI+G SG GK+TL +A + + Sbjct: 5 VLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAV 64 Query: 59 ---GEYILD-GSKTA----SLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMVAQYYH 110 G IL+ GS LSE E +R + + ++FQ L+ + V H Sbjct: 65 IEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAA--LSPVHKVKKQVTDH 122 Query: 111 SMADRRE----AEAVLRKVGLGER---LSHRPSQLSGGEKQRVCIARALVNEPALLLADE 163 ++R A+ +L+K+ + L P +LSGG KQR+ IA +L+ P +++ADE Sbjct: 123 VSGEKRRVEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADE 182 Query: 164 PTGNLDERNEGIVLDLFRALKRE-GRTIIMVTHNPNLAKE-ADRIVYLNHGRISPV 217 PT LD + +L + L+ E TII++THN +A E ADRI + G + V Sbjct: 183 PTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVVEV 238 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 97.4 bits (241), Expect = 3e-22 Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 7/216 (3%) Query: 1 MRCVLELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGE 60 M +L+++D+ + +G I+AL +S V GE + ++GP+GAGKTTL NI++ + P G Sbjct: 1 MTIILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGR 60 Query: 61 YILDGSKTASLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMVAQYYHS---MADRRE 117 I G + R+ R I FQ + LT L NV+V + R Sbjct: 61 VIYKGVDITGWPAYRRS---RAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARER 117 Query: 118 AEAVLRKVGLGERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVL 177 A + VGL + L+ EK+R+ +ARAL +P LLL DE L R ++ Sbjct: 118 AMEAIDMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLV 177 Query: 178 DLFRALKREGRTIIMVTHNPNLAKE-ADRIVYLNHG 212 + + G TIIMV H A+R++ L+ G Sbjct: 178 YTLLEISKRGITIIMVEHVMRAVMNFAERVIVLHFG 213 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 97.1 bits (240), Expect = 3e-22 Identities = 71/218 (32%), Positives = 107/218 (49%), Gaps = 12/218 (5%) Query: 7 LKDITRSY-GSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILDG 65 ++ I + Y + ALD + + GE A++G +GAGKTTL+ IL PT GE + G Sbjct: 15 MRGIVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYVWG 74 Query: 66 SKTASLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMVAQYYHSMA-----DRREAEA 120 K + + R I +V+QQF LV +T EN+ + Y S+ RR Sbjct: 75 RKVSWRGPWDAI---RNGIAMVYQQFRLVESMTVEENIAI--YLSSLGLGRSEARRRTLE 129 Query: 121 VLRKVGLGERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVLDLF 180 ++GL L+ + L G +QRV I +AL +L+ DEPT NL + Sbjct: 130 TAERLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTL 189 Query: 181 RALKREGRTIIMVTHN-PNLAKEADRIVYLNHGRISPV 217 R LK G +++ +TH + + ADR+ L GR+S V Sbjct: 190 RLLKDMGVSVVYITHKLGEVVRVADRVTVLRRGRVSAV 227 Score = 59.3 bits (142), Expect = 8e-11 Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 22/230 (9%) Query: 2 RCVLELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEY 61 R +L ++ ++ ++ + +SL V EGE + I G +G G+ L++ + L P G Sbjct: 260 RELLSVRGVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSI 319 Query: 62 ILDGSKTASLSEHERA-----VLRREKIGLVFQQFHLVPYLTALENVMVAQYYHS---MA 113 + G + + RA R K+ L + EN+ Y S + Sbjct: 320 EVQGRRIEGSLDFYRAGGGYIAGDRGKV--------LAMDYSVAENIAFLYYTASKTLLL 371 Query: 114 DRREAEAVLRKVGLGERLSHRP-----SQLSGGEKQRVCIARALVNEPALLLADEPTGNL 168 R E + R++ RL R +LSGG +Q+V + ++ LL+A PT L Sbjct: 372 RRSRLEDLFRRLVERFRLVARSPWTPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGL 431 Query: 169 DERNEGIVLDLFRALKREGRTIIMV-THNPNLAKEADRIVYLNHGRISPV 217 D V +L L R+G I++V T + + +DRI ++ GR++ V Sbjct: 432 DIATTSFVRNLLSELARQGAGILLVSTDLDEILELSDRIYVMSGGRVTGV 481 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 97.1 bits (240), Expect = 3e-22 Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 11/220 (5%) Query: 1 MRCVLELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGE 60 M C +E + + + +G A+ +S V +GE IMGP+G+GKTTLL +++ + P+ G Sbjct: 1 MGCTVEARGLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGS 60 Query: 61 YILDGSKTASLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMVAQYYHSMAD---RRE 117 + G E R IG Q + +T E + V ++ RRE Sbjct: 61 VRVCGYDVWGDGWRE----ARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARRE 116 Query: 118 AEAVLRKVGLGERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDER-NEGIV 176 A VL +G + L ++LSGG+++ + IA AL + P +++ DEP LD R E + Sbjct: 117 ARRVLEMLGFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLW 176 Query: 177 LDLFRALKREGRTIIMVTHNPNLAK-EADRIVYLNHGRIS 215 L +A K GRT++ +H+P A+ E+DR++ ++ GR++ Sbjct: 177 ASLRKAFK--GRTVLFSSHDPQEAEAESDRVLIMHRGRLA 214 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 96.7 bits (239), Expect = 5e-22 Identities = 80/217 (36%), Positives = 110/217 (50%), Gaps = 10/217 (4%) Query: 4 VLELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYIL 63 +LE+K I YG AL +SLRV +GE +A++G +GAGKTT L ++ L P +G I Sbjct: 6 LLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIW 65 Query: 64 DGSKTASLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMVA----QYYHSMADRREAE 119 G L +R E I V + + P LT EN+ VA + D E Sbjct: 66 QGRDITGLPAFKRV---EEGISHVPEGRGIFPRLTVYENLRVAASTRRAKEHFQDSLEQV 122 Query: 120 AVLRKVGLGERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVLDL 179 + + L R S LSGGE+Q + IARAL+ P LL+ DEP+ L + V+ L Sbjct: 123 YTIFPI-LKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYL 181 Query: 180 FRALKRE-GRTIIMVTHNPNLA-KEADRIVYLNHGRI 214 L+ E G TI++V N L+ K ADR + GRI Sbjct: 182 ASRLREELGVTILLVEQNVGLSLKVADRGYVMETGRI 218 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 89.7 bits (221), Expect = 6e-20 Identities = 69/224 (30%), Positives = 106/224 (47%), Gaps = 17/224 (7%) Query: 3 CVLELKDITRSYG-SIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEY 61 C + L+ + Y S L +S ++ G +A++GP+G+GKTTLL +LA + P+ G Sbjct: 4 CSVRLEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRV 63 Query: 62 ILDGSKTASLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMVAQYYHSMA------DR 115 + GS + R +G + P L A+E ++ +Y S D Sbjct: 64 EVCGSPPGRV---------RRMLGYAPASPEVDPRLKAVEVALLYRYGVSEGVAWGRRDW 114 Query: 116 REAEAVLRKVGLGERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGI 175 E A L ++G+GE R +LS G+++ V +A L P L L DEP LD N Sbjct: 115 EEVLAALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRR 174 Query: 176 VLDLFRALKREGRTIIMVTHNPNLAKEADRIVYLNHGRISPVNP 219 V + R+L R TI+ TH+P A AD ++ L G + P Sbjct: 175 VTLVLRSL-RGRATIVYTTHDPLAAMAADSVIMLREGLLHAQGP 217 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 89.4 bits (220), Expect = 7e-20 Identities = 78/250 (31%), Positives = 113/250 (45%), Gaps = 38/250 (15%) Query: 15 GSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILDGS-------- 66 G + A++ +S R+ GE ++G +G GK+ L L P I++G Sbjct: 24 GIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGR--IVEGKIYYYPEPG 81 Query: 67 ---KTASLSEHERAVLRREKIGLVFQQ--FHLVPYLTALENVMVAQYYHSMADRREAEAV 121 SL E E +R E+I +FQ L P T V H R E V Sbjct: 82 RRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETMLAHGRV-RSLREGV 140 Query: 122 LRKVGL---------GERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERN 172 R VG+ +R+ P +LSGG KQR I +L N P LL+ADEPT LD Sbjct: 141 RRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLIADEPTTALDVTI 200 Query: 173 EGIVLDLFRALKRE-GRTIIMVTHNPNLAKE-ADRIVYLNHGRI-----------SPVNP 219 + ++DL LKRE G T++++THN L E DR+ + G I +P++P Sbjct: 201 QAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEEAPVDELFSNPLHP 260 Query: 220 FVEEVVDARP 229 + ++ A P Sbjct: 261 YTRALIRAVP 270 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 89.0 bits (219), Expect = 9e-20 Identities = 77/270 (28%), Positives = 130/270 (48%), Gaps = 55/270 (20%) Query: 15 GSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILD---GSKTASL 71 G + A+D +SL +++GE L ++G SG+GKTTL + L P +G +D G ++ Sbjct: 25 GYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELEEAV 84 Query: 72 SEHE----------------RAVLR---------------REKIGLVFQQFH--LVPYLT 98 S +E R +++ R K+ +V Q + L P + Sbjct: 85 SIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMK 144 Query: 99 ALENVMVAQYYHSMAD-----RREAEAVLRKVGLGERLSHR-PSQLSGGEKQRVCIARAL 152 E + H + +R VL VGLG+ + R P +LSGG++QRV IARAL Sbjct: 145 VGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIARAL 204 Query: 153 VNEPALLLADEPTGNLDERNEGIVLDLFRAL-KREGRTIIMVTHNPNLAK-EADRIVYLN 210 P +L+ DEPT LD + +L L R L K+ G T +++TH+ ++ + + +V + Sbjct: 205 ALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMY 264 Query: 211 HGRI-----------SPVNPFVEEVVDARP 229 G+I +P++P+ + ++ A P Sbjct: 265 SGKIMESAPKHILFTNPLHPYTKLLLSAVP 294 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 88.2 bits (217), Expect = 2e-19 Identities = 67/238 (28%), Positives = 122/238 (51%), Gaps = 22/238 (9%) Query: 11 TRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILDGSKTAS 70 TR+Y + A+D +++ + G+ L ++G SG+GKTT ++ L+ PT G DG Sbjct: 45 TRAY--VKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMK 102 Query: 71 LSEHERAVLRREKIGLVFQQFH--LVPYLTALENVMVAQYYHSM--ADRRE-AEAVLRKV 125 L RR + ++FQ + L P T + H + D +E ++L +V Sbjct: 103 LRGRGLKEFRR-RAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQV 161 Query: 126 GLGERLSHR-PSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVLDLFRALK 184 GL E +R P + SGG++QR+ IAR L +P ++ DEPT LD + +L+L + L+ Sbjct: 162 GLNETHLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQ 221 Query: 185 RE-GRTIIMVTHNPNLAK-EADRIVYLNHGRI-----------SPVNPFVEEVVDARP 229 R+ T + ++H+ + + +D I + G+I P++P+ + ++++ P Sbjct: 222 RKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEVFEKPLHPYTKVLLESIP 279 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 83.2 bits (204), Expect = 5e-18 Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 33/226 (14%) Query: 1 MRCVLELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGE 60 M V+E++ + + YGS++AL +S V GE +GP+GAGKTT + +L PTSG Sbjct: 1 MGVVIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGS 60 Query: 61 YILDGSKTASLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMVAQYYHSMADRREAEA 120 + G L + +RR ++G V +F ++Y ++ R + Sbjct: 61 ARVFG---VELYNPGASGVRR-RVGYVPGEF---------------EFYGGVSGGRMLDY 101 Query: 121 VLRKVG------LGERLSHRPSQL-------SGGEKQRVCIARALVNEPALLLADEPTGN 167 R VG + E L P L S G KQ + + A +EP L++ DEPT Sbjct: 102 WCRLVGGCSRGVVRELLEAFPLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTG 161 Query: 168 LDERNEGIVLDLFRALKREGRTIIMVTH-NPNLAKEADRIVYLNHG 212 LD G VLD R+ REG T+ +H + + ADR+ L G Sbjct: 162 LDPLARGRVLDFVRSKAREGVTVFFSSHVLSEVQRVADRVGLLRSG 207 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 81.6 bits (200), Expect = 1e-17 Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 12/206 (5%) Query: 17 IDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILDGSKTASLSEHER 76 ++AL +S V EGE + +GP+GAGKTT + IL+ L P GE + G ER Sbjct: 25 VEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAGFDVVK----ER 80 Query: 77 AVLRREKIGLVFQ-QFHLVPYLTALENVMVAQYYHSMAD---RREAEAVLRKVGLGERL- 131 +R+ +IG++ + LT EN+ + + + + VL VGL + Sbjct: 81 WEVRK-RIGVMLSVERGFYWKLTGRENLYYFGRIYGIPQGELKSRIKEVLDLVGLTDLGG 139 Query: 132 SHRP-SQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVLDLFRALKREGRTI 190 + +P ++S G K R+ +AR L+ +P +L+ DEPT LD + + + R+L EGRTI Sbjct: 140 ADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSLASEGRTI 199 Query: 191 IMVTHNPNLAKE-ADRIVYLNHGRIS 215 + THN A+ +DR+ + GRI+ Sbjct: 200 FITTHNMVEAEMISDRVGIIIGGRIA 225 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 81.3 bits (199), Expect = 2e-17 Identities = 72/255 (28%), Positives = 118/255 (46%), Gaps = 43/255 (16%) Query: 17 IDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILDGSKTASLSEHER 76 + A+D +S + GE ++G SG GKTT + L T G K L E ER Sbjct: 47 VKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEV-LEELER 105 Query: 77 --------------AVLRRE------KIGLVFQQFH--LVPYLTALENVMVAQYYHSMAD 114 AV RR+ ++ +V+Q + L P T + HS+ + Sbjct: 106 RGVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGN 165 Query: 115 RREAEAVLRKVGLGERLS-------HRPSQLSGGEKQRVCIARALVNEPALLLADEPTGN 167 RE E ++ ++ +L+ P QLSGG++QRV IARA + P+L++ADEP Sbjct: 166 AREREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSM 225 Query: 168 LDERNEGIVLDLFRALKRE-GRTIIMVTHNPNLAKE-ADRIVYLNHGRI----------- 214 LD +L+L + + G +++ +TH+ +A+ DRI + G+I Sbjct: 226 LDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDARRIIE 285 Query: 215 SPVNPFVEEVVDARP 229 P++P+ + +V A P Sbjct: 286 RPIHPYTKALVAAIP 300 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 80.5 bits (197), Expect = 3e-17 Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 9/167 (5%) Query: 33 LAIMGPSGAGKTTLLNILALLDTPTSGEYILDGSKTASLSEHERAVLRREKIGLVFQQFH 92 L ++GP+GAGKTTLL + L P++GE +++G S E+ + R IG V + Sbjct: 32 LGVLGPNGAGKTTLLKTILGLVKPSAGEILVEGVNPRSPG-FEKLLPR---IGYV-PELP 86 Query: 93 LVPYLTA----LENVMVAQYYHSMADRREAEAVLRKVGLGERLSHRPSQLSGGEKQRVCI 148 +VP T LE + + Y S+ R A L VGL +LS G ++RV + Sbjct: 87 VVPLWTTPCILLETLARLEGYTSVEARVRAREALEVVGLAGECETPIGKLSKGARKRVLV 146 Query: 149 ARALVNEPALLLADEPTGNLDERNEGIVLDLFRALKREGRTIIMVTH 195 A+A + E LL+ DEP LD V +L R + REG T+I+ +H Sbjct: 147 AQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAREGATVIVSSH 193 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 80.1 bits (196), Expect = 4e-17 Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 8/207 (3%) Query: 10 ITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILDGSKTA 69 + +S L +SL V+ GE + G +GAGKTT L +L L + SGE + G Sbjct: 20 VAKSVKGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPW 79 Query: 70 SLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMV-AQYYHSMADRRE-AEAVLRKVGL 127 ER + ++G + + + LT +EN++ A+ Y D E E + GL Sbjct: 80 G-GGFERV---KGEVGYLPEDASVYERLTGMENILFYARLYSGWRDVEELVENAVFYSGL 135 Query: 128 G-ERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVLDLFRALKRE 186 E L+ R S G K+R+ + L+++P L++ DEPT +D + + R L RE Sbjct: 136 SREDLARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSRE 195 Query: 187 GRTIIMVTHNPNLAKE-ADRIVYLNHG 212 GR I++ TH+ LA+E ADR+ ++ G Sbjct: 196 GRAILVTTHDLALAEEIADRVTIIHGG 222 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 80.1 bits (196), Expect = 4e-17 Identities = 67/203 (33%), Positives = 100/203 (49%), Gaps = 12/203 (5%) Query: 20 LDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALL-----DTPTSGEYILDGSKTASLSEH 74 + LSL VE+G ++GP+GAGKTTLL ++ + T G L+G ++ Sbjct: 21 IKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGE---DITNR 77 Query: 75 ERAVLRREKIGLVFQQFHLVPYLTALENVMVAQYYHSMADRREAEAVLRKVG-LGERLSH 133 E + R + V + + LT EN +V+ Y + A R + +VL L ERL Sbjct: 78 EPDEIARRGVIYVMEGRRIFKELTTEEN-LVSVAYAAGASRDDIRSVLSYFPRLKERLGE 136 Query: 134 RPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVLDLFRALKR-EGRTIIM 192 + LSGGE+Q + IA AL+ P LL+ DEP+ L + + + L R EG TI++ Sbjct: 137 KAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHREEGLTILL 196 Query: 193 VTHNPNLAKEADRIVY-LNHGRI 214 N A E Y + +GRI Sbjct: 197 AEQNARKALEISDYGYVIENGRI 219 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 80.1 bits (196), Expect = 4e-17 Identities = 69/229 (30%), Positives = 104/229 (45%), Gaps = 21/229 (9%) Query: 5 LELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILD 64 + ++D+T +Y L ++L + I+GP+GAGKTT L + L P G LD Sbjct: 3 VRVEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLD 62 Query: 65 GSKTASLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMVAQYYHSMAD-------RRE 117 G + R E +G P L + V ++ + R Sbjct: 63 GFEATG---------RPEMVGRYAGYVPQNPSAPKLSPMTVREFVETSLRLRGVTRARER 113 Query: 118 AEAVLRKVGL-GERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIV 176 A VL +G+ GE L R +LS G QRV IARA+ +P +L+ DEP ++D + Sbjct: 114 AVEVLHTLGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEI 173 Query: 177 LDLFRALKREGRTIIMVTHNPN-LAKEADRIVYLNHGRISPVNPFVEEV 224 + L RE R ++M +H+P+ L D IV +N I+ P EEV Sbjct: 174 ARIIAGLARE-RLVLMTSHDPSLLLGHTDIIVVINRDLIASGPP--EEV 219 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 78.2 bits (191), Expect = 2e-16 Identities = 61/226 (26%), Positives = 110/226 (48%), Gaps = 19/226 (8%) Query: 5 LELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDT--PTSGEYI 62 LE+K +T G L+++ ++ GE A+MGP+G+GK++L ++ + G+ + Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 63 LDGSKTASLSEHERAVLRREKIGLVFQQFHLVP-------YLTALENVMVAQYYHSMADR 115 LDG L ERA+ + I + Q +P + + + AQ AD Sbjct: 63 LDGESIKELPPEERAL---KGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADP 119 Query: 116 REAEAVLR---KVGLGERLSHRPSQL--SGGEKQRVCIARALVNEPALLLADEPTGNLDE 170 + + + K+GL + +R + SGGEK+R + +A++ +P +++ DEP LD Sbjct: 120 KIVKRMYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDI 179 Query: 171 RNEGIVLDLFRALKREGRTIIMVTHNPNLAK--EADRIVYLNHGRI 214 IV + + L+ GR ++++TH L E DR+ L G + Sbjct: 180 DGLKIVAEFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGSV 225 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 74.7 bits (182), Expect = 2e-15 Identities = 67/219 (30%), Positives = 98/219 (44%), Gaps = 15/219 (6%) Query: 1 MRCVLELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGE 60 M +L L+++ + G L +SL + GE + + G +G+GKTTLL + A L P+ G Sbjct: 1 MAALLRLENVWKMLGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGR 60 Query: 61 YILDGSKTASLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMVAQYYH--SMADRREA 118 + R +G V + LT ENV H S+ D A Sbjct: 61 VSWGCPRGP-----------RGCVGYVGHTPMVYGDLTVWENVEFFSSLHGGSLGDYPLA 109 Query: 119 EAVLRKVGLGERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVLD 178 R +GL + SH SQLS G ++R+ + RAL+ EP LLL DE LD+ + Sbjct: 110 AEAWRLLGLEKYGSHLASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSR 169 Query: 179 LFRALKREGRTIIMVTH--NPNLAKEADRIVYLNHGRIS 215 L R EG ++M T P A R+ L G ++ Sbjct: 170 LLRLALGEGLALLMTTPLLEPRYLGLASRVYTLQDGLLA 208 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 68.9 bits (167), Expect = 1e-13 Identities = 69/224 (30%), Positives = 102/224 (45%), Gaps = 25/224 (11%) Query: 4 VLELKDITRSY-GSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYI 62 V+ L+D+ Y G L +SL G L + GP+G GK+T+L + A L T G Y+ Sbjct: 3 VVRLRDVWYRYPGGGWVLRGVSLEAPRGITL-LAGPTGGGKSTILRVAAGLATRIYGGYL 61 Query: 63 LDGSKTASLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMVAQYYHSMAD------RR 116 V R K LV Q + L ++ +L +Y + + RR Sbjct: 62 ------------RGEVEARGKPVLVPQDYDL--FILSLTPREELEYCYEASGLPPWEARR 107 Query: 117 EAEAVLRKVGLGERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIV 176 EA + ++G+ + L R S+LS GE+QRV IA AL +LL DEP D + Sbjct: 108 EAVRLAEELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVESL 167 Query: 177 LDLFRALKREGRTIIMVTHNPNLAKEADRIVYLNH-GRISPVNP 219 + L R L EG +++ H + A VYL + GR + P Sbjct: 168 IRLLRRLDVEG--VVVAEHRVHYLLPAASSVYLVYDGRAKQLGP 209 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 66.6 bits (161), Expect = 5e-13 Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 10/215 (4%) Query: 5 LELKDITRSY-GSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYIL 63 L ++D+ Y G + AL ++ G A++G +GAGKTTLL + + P G ++ Sbjct: 5 LAVEDLDVVYPGGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILV 64 Query: 64 DGSKTASLSEHERAVLRREKIGLVFQQFHLVPYLTALENVMVA-QYYHSMADRREAEAVL 122 DG + + R I + Q + P + A E++ V A R+A +L Sbjct: 65 DGYELRPKGPGDSL---RSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTML 121 Query: 123 RKVGLGERLSHRPSQLSG----GEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVLD 178 + L+ P + G E+QR+ + +AL +L DEPT +L +L+ Sbjct: 122 AEASEALGLNIDPDRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLE 181 Query: 179 LFRALKREGRTIIMVTHNPNLAKE-ADRIVYLNHG 212 L G +++VTH A E ADR+V L G Sbjct: 182 AAGRLAASGAAVLLVTHRIGEAMEHADRLVILRKG 216 Score = 55.1 bits (131), Expect = 2e-09 Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 21/216 (9%) Query: 25 LRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILDGSKTASLSEHERAVLRREKI 84 L V +GE + + G +G G+ L ++ L P G ++ G L R ++ Sbjct: 275 LEVRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPP-----LARRRL 329 Query: 85 GL-VFQQFHLVPYLTALENVM--VAQYYHSMAD---------RREAEAVLRKVGLGERLS 132 GL V + L L E++ +A H+ D + AE ++R +G+ + +S Sbjct: 330 GLGVIPEERLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGI-KAVS 388 Query: 133 HRP--SQLSGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVLDLFRALKREGRTI 190 R +LSGG QR+ +AR L +P LL+A P LD + V ++ R G + Sbjct: 389 PRQMVDELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRMSSERGGVL 448 Query: 191 IMVTHNPNLAKEADRIVYLNHGRI-SPVNPFVEEVV 225 ++ L + +++I + G + P P E+ + Sbjct: 449 VIDEDLDFLLRVSNKIYVASGGIVKGPYLPTEEKSI 484 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 66.2 bits (160), Expect = 7e-13 Identities = 65/221 (29%), Positives = 99/221 (44%), Gaps = 24/221 (10%) Query: 5 LELKDITRSYGSIDALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSGEYILD 64 +E + + + G L +SL V G ++GP+GAGKTTL L G Y D Sbjct: 9 VEAEGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLL-------GLYRAD 61 Query: 65 GSKTASLSEH-ERAVLRREKIGLVFQQFHLVPY-------LTALENVMVAQYYHSMADRR 116 + A L E ERA G +F++ +P +T E + + + + D Sbjct: 62 RGRVALLGEPVERAG------GSLFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLE 115 Query: 117 E-AEAVLRKVGLGERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLDE-RNEG 174 E R GLG RL R S G ++R+ +A L +P+L + DEPT LD + G Sbjct: 116 GYLEEASRLSGLGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVG 175 Query: 175 IVLDLFRALKREGRTIIMVTHNP-NLAKEADRIVYLNHGRI 214 I L +R G T+++ +HN + I ++ GRI Sbjct: 176 IRRLLKEYSERHGVTVLLSSHNMYEVESVCSEITMISSGRI 216 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 65.9 bits (159), Expect = 9e-13 Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 27/221 (12%) Query: 6 ELKDITRSYGSID------ALDRLSLRVEEGEWLAIMGPSGAGKTTLLNILALLDTPTSG 59 EL+D+ R++G+ L +++ V G A++G SGAGKTTLL ++ G Sbjct: 436 ELQDVLRAFGAERRVVERYVLKDVNITVNPGSVAAVVGASGAGKTTLLRMILGKALGIGG 495 Query: 60 EYILDGSKTASLSEHERAVLRREKIGLVFQQFHLVPYL---TALENVMVAQYYHSMADRR 116 E S + + +A L P T LE+V + D Sbjct: 496 EGYRPDSGVVKIPTNTKAA--------ALLPGELEPSFGGETLLEHVA-----SKLGDPG 542 Query: 117 EAEAVLRKVGLGERLSHRPS--QLSGGEKQRVCIARALVNEPALLLADEPTGNLDERN-E 173 A VL VGLG+ + R S +LS G+K+R +A L P LL+ DE +LD Sbjct: 543 AAVEVLSSVGLGDAIFFRASFGELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLTAR 602 Query: 174 GIVLDLFRALKREGRTIIMVTHNPNL--AKEADRIVYLNHG 212 I L + + +G T+I+ T+ P + A + D ++ + +G Sbjct: 603 RIARKLGKLARSKGITLIVSTNRPEILDALQPDTVILVGYG 643 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 54.7 bits (130), Expect = 2e-09 Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 25/182 (13%) Query: 34 AIMGPSGAGKTTLLNILALLDTPTSGEYILDGSKTASLSEHERAVLRREKIGLVFQQFHL 93 AI+G +G+GKTTLL + A L P G ++G + ++G Q Sbjct: 20 AILGANGSGKTTLLKLAARLLKPDRGS--VEGPR---------------RVGAALQN--- 59 Query: 94 VPYLTALENVMVAQYYHSMADRREAEAVLRKVGLGERLSHRPSQLSGGEKQRVCIARALV 153 PYL L + + R EA +LR+ GL P LS GE + + + A+ Sbjct: 60 -PYLGFLGPTVAEDLARTAGGRGEALKLLREAGLEYASERSPYTLSMGEARILSVLMAIS 118 Query: 154 NEPALLLADEPTGNLDERNEGIVLDLFRALKREGRTIIMVTHNPNLAKE-ADRIVYLNHG 212 P ++ DEPT LD + + L + R G +++ H+ + A A V L G Sbjct: 119 WGPEAVVIDEPTSGLDGSGKRWLASL---IARLGVPVLVAGHDIDFAAAVAGWAVILRDG 175 Query: 213 RI 214 R+ Sbjct: 176 RV 177 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 54.3 bits (129), Expect = 3e-09 Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 13/194 (6%) Query: 29 EGEWLAIMGPSGAGKTTLLNILALLDTPTSG---------EYILDGSKTASLSEHERAVL 79 EG+ + ++G +G GKTT L ILA P G + IL + + L + R ++ Sbjct: 105 EGQVVGLLGRNGTGKTTALRILAGELKPNLGRVEGGEPEWDEILKRFRGSELQTYFRKLV 164 Query: 80 RRE-KIGLVFQQFHLVPYLTALENVMVAQYYHSMADRREAEAVLRKVGLGERLSHRPSQL 138 + ++ Q LVP V +R A + +VGL + QL Sbjct: 165 DGKLRVAHKIQYVELVPRRL---KGRVRDLLKRADERGVALELAEQVGLDKVFDRDVRQL 221 Query: 139 SGGEKQRVCIARALVNEPALLLADEPTGNLDERNEGIVLDLFRALKREGRTIIMVTHNPN 198 SGGE Q++ I L + + + DEP+ LD R + L R G +++V H+ Sbjct: 222 SGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAARPGAYVMVVEHDLA 281 Query: 199 LAKEADRIVYLNHG 212 + +V++ +G Sbjct: 282 VLDYVSDLVHILYG 295 Score = 48.9 bits (115), Expect = 1e-07 Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 32/191 (16%) Query: 19 ALDRLSLRVEEG-----EWLAIMGPSGAGKTTLLNILALLDTPTSGE---YILDGSKTAS 70 ALD +L EG E + + GP+G GKTT + LA P G Y+ Sbjct: 367 ALDGFTLTSGEGALYGGEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYV-------- 418 Query: 71 LSEHERAVLRREKIGLVFQQFHLVPYL---TALENVMVAQYYHSMADRREAEAVL-RKVG 126 E + + ++ ++ P +E V+ A +A L +++ Sbjct: 419 -----------EDLRVSYKPQYISPESLPDATVEQVLKAANPAILAPGSWLNLELVKRMR 467 Query: 127 LGERLSHRPSQLSGGEKQRVCIARALVNEPALLLADEPTGNLD-ERNEGIVLDLFRALKR 185 L + L R LSGGE Q+V +A AL E + L DEP+ LD E G+ + R ++ Sbjct: 468 LDKLLERRVRTLSGGELQKVAVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVET 527 Query: 186 EGRTIIMVTHN 196 ++V H+ Sbjct: 528 REAAALVVEHD 538 >gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1] Length = 919 Score = 44.3 bits (103), Expect = 3e-06 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 9/101 (8%) Query: 115 RREAEAVLRKVGLGERLSHRPSQ-LSGGEKQRVCIARALVNEPAL------LLADEPTGN 167 R +A + +G ++RP + +SGGE+ + ++ L A+ L DEPT N Sbjct: 803 REKAAREIEVKAIGGNGAYRPLEAVSGGERTVLALSFVLALNKAVGGKLGFLALDEPTAN 862 Query: 168 LDERNEGIVLDLFRALKREG--RTIIMVTHNPNLAKEADRI 206 LDE ++++ R + EG R +++VTH+ ++ AD I Sbjct: 863 LDEDRRRSLVEVLRGISVEGLVRQLVVVTHHEDVRDYADTI 903 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 232,619 Number of Sequences: 1700 Number of extensions: 10070 Number of successful extensions: 184 Number of sequences better than 1.0e-04: 42 Number of HSP's better than 0.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 83 Number of HSP's gapped (non-prelim): 48 length of query: 229 length of database: 492,079 effective HSP length: 74 effective length of query: 155 effective length of database: 366,279 effective search space: 56773245 effective search space used: 56773245 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719490|ref|YP_003875022.1| integral membrane protein [Spirochaeta thermophila DSM 6192] (387 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 360,118 Number of Sequences: 1700 Number of extensions: 15838 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 0 length of query: 387 length of database: 492,079 effective HSP length: 79 effective length of query: 308 effective length of database: 357,779 effective search space: 110195932 effective search space used: 110195932 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719491|ref|YP_003875023.1| permease domain-containing protein [Spirochaeta thermophila DSM 6192] (425 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 429,875 Number of Sequences: 1700 Number of extensions: 19179 Number of successful extensions: 63 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63 Number of HSP's gapped (non-prelim): 0 length of query: 425 length of database: 492,079 effective HSP length: 79 effective length of query: 346 effective length of database: 357,779 effective search space: 123791534 effective search space used: 123791534 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719492|ref|YP_003875024.1| hypothetical protein STHERM_c18160 [Spirochaeta thermophila DSM 6192] (402 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 327,310 Number of Sequences: 1700 Number of extensions: 12587 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 402 length of database: 492,079 effective HSP length: 79 effective length of query: 323 effective length of database: 357,779 effective search space: 115562617 effective search space used: 115562617 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719493|ref|YP_003875025.1| hypothetical protein STHERM_c18170 [Spirochaeta thermophila DSM 6192] (172 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 190,284 Number of Sequences: 1700 Number of extensions: 8767 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 172 length of database: 492,079 effective HSP length: 71 effective length of query: 101 effective length of database: 371,379 effective search space: 37509279 effective search space used: 37509279 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719494|ref|YP_003875026.1| cytochrome c, class I [Spirochaeta thermophila DSM 6192] (647 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431897|ref|NP_148645.2| FTR1 family protein [Aeropyrum per... 65 5e-12 >gi|118431897|ref|NP_148645.2| FTR1 family protein [Aeropyrum pernix K1] Length = 276 Score = 65.1 bits (157), Expect = 5e-12 Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 17/206 (8%) Query: 376 LIILREGVEAILIIMALVAFLTRSGNTDRIRTIYHXXXXXXXXXXXXXXXFSWVFRVSGA 435 L+ RE EAIL+ ++ L + G +I+ +Y +FR Sbjct: 9 LVAFREAFEAILLSTIIIMLLKKMGEHGKIKIVYTTAILSVVLGVALGAGIYTIFR-GFP 67 Query: 436 AREVLEGVTMLLAAVVLVGVSYWLLS---KVESEAWMRYLRSKLQVALSENSVRALWFTA 492 +E++E LAA+V+ V W + K++ E + +KL +LS +V + Sbjct: 68 EKELVEAGMSYLAAMVIGTVIVWGVRHGPKIKGE-----IEAKLASSLSAKAVAVV---T 119 Query: 493 FLAVYREGAETVLFYQALAVDAGTTSHFFMILAGFLVGILALGVVFYLLKEGAMRLPLGP 552 F+ V+RE ETVL V +++ + ++G +G LALGV Y L MR+ L Sbjct: 120 FIFVFREVFETVLITAPFLVSNPSSN--ILGVSGGTLGALALGVAVYWL---GMRINLRT 174 Query: 553 FFAVTGSFLYYMAFVFAGKGVMELIE 578 FF T L ++A G G EL+E Sbjct: 175 FFLGTSILLAFVASGLVGYGTHELLE 200 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 607,546 Number of Sequences: 1700 Number of extensions: 27115 Number of successful extensions: 109 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 108 Number of HSP's gapped (non-prelim): 1 length of query: 647 length of database: 492,079 effective HSP length: 83 effective length of query: 564 effective length of database: 350,979 effective search space: 197952156 effective search space used: 197952156 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719495|ref|YP_003875027.1| hypothetical protein STHERM_c18190 [Spirochaeta thermophila DSM 6192] (339 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 359,824 Number of Sequences: 1700 Number of extensions: 16463 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 0 length of query: 339 length of database: 492,079 effective HSP length: 77 effective length of query: 262 effective length of database: 361,179 effective search space: 94628898 effective search space used: 94628898 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719496|ref|YP_003875028.1| valyl-tRNA synthetase [Spirochaeta thermophila DSM 6192] (882 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431600|ref|NP_148179.2| valyl-tRNA synthetase [Aeropyrum p... 321 5e-89 gi|14600670|ref|NP_147189.1| isoleucyl-tRNA synthetase [Aeropyru... 281 4e-77 gi|14601141|ref|NP_147669.1| leucyl-tRNA synthetase [Aeropyrum p... 134 1e-32 >gi|118431600|ref|NP_148179.2| valyl-tRNA synthetase [Aeropyrum pernix K1] Length = 823 Score = 321 bits (822), Expect = 5e-89 Identities = 230/746 (30%), Positives = 360/746 (48%), Gaps = 46/746 (6%) Query: 4 KEVLLEKVYNPKEFEERIYATWLEQGAFMPREGVGKPFVIVI---PPPNVTGVLHMGHGL 60 K + EK ++ E EE++ + W + P IV+ PPP +G H+G Sbjct: 6 KPAIQEKRWDIGE-EEKLLSLWDAEDLHKSTLDPDDPREIVVIDTPPPYPSGKWHVGGAA 64 Query: 61 NNSLQDILIRYHRMKGEPTLWLPGTDHAGIATQSVVERK--LWAQGVDPRSLGREKFVEI 118 + + D++ RY R+KG + D G+ + VE+ + A + + GRE+F+ + Sbjct: 65 HYTQIDMIARYFRLKGYNVVAPFYADRNGLPVEVQVEKTYGVVAHEMARTTEGRERFLAL 124 Query: 119 TWQHALEHKEIIINQLKKIGASCDWSRERFTLDEGLSRAVREV-FVSLYEKGLIYRGTYL 177 + + + I+ +++G D+ RE D R++ + F+ L+ +GLIY Sbjct: 125 CSEFLDKVESEIVQLWRRLGCGFDYWREG--TDSPRYRSMTQATFIDLWRRGLIYEAERP 182 Query: 178 VNWSPGLKTALADDEVEYKEVQGKLYYILYPVADSEEKVMIATTRPETMLGDTAVAVHPG 237 V W P KT LA+ E+E+KE + +YY+ Y + + +++ATTRPE + G A+A HP Sbjct: 183 VRWCPRCKTTLAEAEIEHKEDEDFIYYVKYRLEEDGRDLVVATTRPELLAGCAALAYHPE 242 Query: 238 DERYRHLVGKEVIVPLVNRRVKVIADEYVDPEFGTGVVKITPAHDFNDFEIGKRHNLEFI 297 DERY+ L GK I PL RVK++ V +FGTG++ I D D + +L+ Sbjct: 243 DERYKGLAGKTAIAPLYGHRVKIVEHPAVKKDFGTGLMMICSYGDEEDVRLFLELDLKPK 302 Query: 298 NIFNPDATLNEHVPEKYRGLSREEARARVVEDLKALGLLVKEEPHVHQVGHCYRTHVPVE 357 + + + +NE+ GL +EAR R+ E L+ GLLVK+E VH V C+R P++ Sbjct: 303 VLIDENGVMNENA-GPIAGLPVKEARRRIAEILEREGLLVKKERIVHSVPVCWRCKTPLQ 361 Query: 358 PYLSEQWFVRMDTMAQKALKAWEEGKIQFFPRKWENTYTHWLRNIR-DWCISRQLWWGHR 416 + F+R +A K+ F P W+ +I+ DW ISR+ ++G Sbjct: 362 IIHRRELFLRQLDFKDAVKQA--AAKMDFKPEMHRKKLYDWIDSIKMDWPISRERFYGTE 419 Query: 417 IPVWYCDDCGAQMV---------LREDP--TSCTSCGSTK--IRQDEDVLDTWFSSWLWP 463 IP+W C+ CGA++V E+P SC CG+ + ++ + V DTWF S + P Sbjct: 420 IPLWTCEKCGAKLVPEPGRYYRPWAEEPPWDSCPRCGAPRRYLKGETRVFDTWFDSSISP 479 Query: 464 FSTLGWPEETEDLKRFFPTTTLVTAYDIIFFWVARMIMASLEFMHEVPFRDIYITGLVRD 523 W + +R DII W+ I+ L+ + FR + ITGL D Sbjct: 480 LYVTRWMWDKRFYERASRNVLRPQGQDIIRTWLYYSILRVLQLTGKPAFRWVRITGLGLD 539 Query: 524 KQGRKMSKSLGNGIDPLEIVEEYGADALRFTLAFLAAQGQDVLLDKETFQVGAHFANKIW 583 +GR M KSLGN IDP I+ +YG DA RF A A G D D+ + G +FA K+W Sbjct: 540 PKGRPMHKSLGNVIDPEPIIAKYGGDAFRFWAAIAAKLGYDYRFDENKVKTGRNFATKLW 599 Query: 584 NASRFI--LMNLEGRTLIPFEEIETTDVDRWILHRLNQTIRTVRDALETYRFNEAAQTAY 641 N +RF+ EG P E + T+VD+ L ++ + A E A Y Sbjct: 600 NLARFVSSFPRPEGS---PLE--KATEVDKAFLALADEYLEAADKAYGELDVYEPANLIY 654 Query: 642 EFFWSDFCDWYIESAK-RSLNGD---DEREKDRVVSLLLFVLEQALKLLHPFLPFVTEEL 697 E W F Y+E K RS N E++ + L +L + L L P +PFVT+ + Sbjct: 655 ELAWDIFASHYVELVKERSYNRSGLFTREEQEAAWATLHELLRRILVALSPIMPFVTDAI 714 Query: 698 YQKLPTTEGLLILAPFPEPREEWDDP 723 +++L + R+ W DP Sbjct: 715 HRRLYGSS---------VHRQRWPDP 731 >gi|14600670|ref|NP_147189.1| isoleucyl-tRNA synthetase [Aeropyrum pernix K1] Length = 1064 Score = 281 bits (720), Expect = 4e-77 Identities = 227/856 (26%), Positives = 380/856 (44%), Gaps = 99/856 (11%) Query: 18 EERIYATWLEQGAFMPREGVGKPFVIVIPPPNVTGVLHMGHGLNNSLQDILIRYHRMKGE 77 E IY E+ + PR K + + PP +H+G N ++D+++R++RM G Sbjct: 28 ENSIYRKVKEKSSRAPR----KFYFLDGPPYASAKSIHIGTAWNKVVKDVVLRFYRMTGY 83 Query: 78 PTLWLPGTDHAGIATQSVVERKLWAQGVDP--RSLGREKFVEITWQHALEHKEIIINQLK 135 PG D G+ + +E+ L + +G E F+ + E+ E + Q K Sbjct: 84 NVWDKPGYDTHGLPIEVKIEQSLGVRVKREIEEKVGVENFIAACKRFVDENMEAMTRQFK 143 Query: 136 KIGASCDWSRERFTLDEGLSRAVREVFVSLYEKGLIYRGTYLVNWSPGLKTALADDEV-E 194 +IG DW T + + + +EKGL+Y+G +++W P +T LAD EV E Sbjct: 144 EIGVFMDWENPYVTYRDEYIESGWWLVKKAWEKGLLYKGYRVLHWCPRCETTLADYEVSE 203 Query: 195 YKEVQGKLYYILYPVADSE-EKVMIATTRPETMLGDTAVAVHPGDERYRHLVGKEVIVPL 253 Y+E++ Y+ +PV E E +++ TT P T+ + V HP E + VG++ ++ L Sbjct: 204 YRELEDPSIYVKFPVEGREGEYLLVWTTTPWTLPANAFVMAHPDMEYVKVRVGRDTLI-L 262 Query: 254 VNRRVK-----------------------------------------------VIADEYV 266 R+ V+A E V Sbjct: 263 AKARLDHVMREAGVSEYEVLEVLKGSQLEGLRYRHPLEDVVDAQRELSKWHKVVMAPEAV 322 Query: 267 DPEFGTGVVKITPAHDFNDFEIGKRHNLEFINIFNPDATLNEHVPEKYRGLS-REEARAR 325 P G+G+V P H D+EI +R +++ + + E KY GL R EA Sbjct: 323 TPHEGSGLVHSAPGHGTIDYEIAQRIGAPVVSLVDERGFMTE-AAGKYSGLYFRGEANKA 381 Query: 326 VVEDLKALGLLVKEEPHVHQVGHCYRTHVPVEPYLSEQWFVRMDTMAQKALKAWEEGKIQ 385 +VEDL+A G L VH+ C+R P+ + QWFV + + + ++ E K++ Sbjct: 382 IVEDLRARGALFHAATIVHRYPVCWRCKTPLLLRATTQWFVAVTRLKNQLMR--EAEKVE 439 Query: 386 FFPRKWENTYTHWLRNIRDWCISRQLWWGHRIPVWYCDDCGAQMVLR--EDPTS------ 437 + P + + + LR +RDW ISRQ +WG +PVW C CG + V+ E+ S Sbjct: 440 WQPGWAKTRFMNMLRELRDWVISRQRYWGIPLPVWRCSSCGYEHVVGSVEELESMGGRRP 499 Query: 438 --------------CTSCGSTKIRQDEDVLDTWFSSWLWPFSTLGWPEETEDLKRFFPTT 483 C CG + +++ DVLD WF S + +++LG+P + E +R P Sbjct: 500 ENLHRPWVDRVELKCPRCGGS-MKRVPDVLDVWFDSGIAFYASLGYPRDRETWERLKPVD 558 Query: 484 TLVTAYDIIFFWVARMIMASLEFMHEVPFRDIYITGLVRDKQGRKMSKSLGNGIDPLEIV 543 +V +D I W ++ + + E P+R + + G D+QGR+M KSLGN +D E++ Sbjct: 559 FIVEGHDQIRGWFFSLLRSGVIGFGETPYRRVLVHGFALDEQGREMHKSLGNYVDFEELI 618 Query: 544 EEYGADALRFTLAFLAAQGQDVLLDKETFQVGAHFANKIWNASRF--ILMNLE----GRT 597 + D +RF + +D+ + + N IWN F I M L+ RT Sbjct: 619 AKVPRDVVRFWV-LQNTVWEDLRFSWKGLDLMRRDFNVIWNVYAFASIYMGLDRFDPRRT 677 Query: 598 LIPFEEIETTDVDRWILHRLNQTIRTVRDALETYRFNEAAQTAYEFFWSDFCDWYIESAK 657 + E DRWIL RL R A+E R ++AA+ F D WY+ + Sbjct: 678 SLSSVEDSLEVEDRWILSRLASLKRRYLTAMEDLRIHDAARALRSFIIEDVSHWYLRIIR 737 Query: 658 RSLNGD-DEREKDRVVSLLLFVLEQALKLLHPFLPFVTEELYQKL-----PTTEGLLILA 711 R + + D K + L VL + L + P +P+ E LY K+ E + + Sbjct: 738 RRVWEEVDTPSKRAAYATLYKVLWEWLLMAAPLIPYTAEYLYIKVFREAEERPEESIHML 797 Query: 712 PFPEPREEWDDPAAEASYAVLQEVVRGVRSLRSQ--FTIPPSVKFRVVVRSDDERLRAYL 769 PEP + D E + V+ + S R++ + V+ RV++ + + + L Sbjct: 798 DMPEPEDHLIDSTLEEDMEKARMVLEAILSARNEAGLKLRRPVR-RVIIAASNPGVEGSL 856 Query: 770 EAHDDLMKLLMNIEDL 785 + L++L+ N +++ Sbjct: 857 RRLEGLIRLMANAKEI 872 >gi|14601141|ref|NP_147669.1| leucyl-tRNA synthetase [Aeropyrum pernix K1] Length = 959 Score = 134 bits (337), Expect = 1e-32 Identities = 221/905 (24%), Positives = 338/905 (37%), Gaps = 171/905 (18%) Query: 15 KEFEERIYATWLEQGAFM--PREGVGKPFVIVIPPPNVTGVLHMGHGLNNSLQDILIRYH 72 K EE+ W E F P+ G K F I P P V H+G DI+ RY Sbjct: 5 KAVEEKWQERWREARLFEADPQPGRRK-FFITFPYPYVNAYPHLGSAFTILRVDIMARYK 63 Query: 73 RMKGEPTLWLPGTDHAGIATQSVVERKLWAQGVDPRSLGREKFVEITWQHALEHKEIII- 131 RM+G L+ G G +V L + DPR + + + I + ++ Sbjct: 64 RMRGYNVLFPQGWHATG---GPIVSSALRVREGDPRIIKTLRDMGIPEEDIPRFRDPRYW 120 Query: 132 ---------NQLKKIGASCDWSRERFT--LDEGLSRAVREVFVSLYEKGLIYRGTYLVNW 180 L++ G S DW RE +T L+ SR + ++ L EKG + +G + V W Sbjct: 121 VEFFTKAWRRDLERYGMSIDWRREFYTTSLNPAYSRFIEWQYLKLREKGFVGKGRHPVVW 180 Query: 181 SPGLKTALADDEV--EYKEVQGKLYYILYPVADSEEKVMIATTRPETMLGDTAVAVHP-- 236 P + + D + EY + + I+ T RPET+ G T + VHP Sbjct: 181 CPKEQKVVGDHDRPDEYAGISPQEAVIIKFRGRDGLVYPALTYRPETVFGVTNLWVHPDA 240 Query: 237 --------GDERY-------------------------RHLVGKEVIVPLVNRRVKVIAD 263 G+ER+ R L+G+ V+ P R V V+ Sbjct: 241 TYLVAEVDGEERWIIGEQAARELADQGHRVVILERIEGRRLLGRIVVNPADGREVPVLPA 300 Query: 264 EYVDPEFGTGVVKITPAHDFNDF------------------EIGKRHNLEFINIFN---- 301 +V P+ GTGVV PAH D+ E G +LE I + Sbjct: 301 SFVRPDLGTGVVMSVPAHAPYDYVALMELKRRPETLREYGLEPGVVESLEPIQLIAVPRA 360 Query: 302 -----------------------PDATLNEHVPEKYRGLSRE-----------EARARVV 327 +AT + E Y G+ E EA+ +VV Sbjct: 361 EGLLVVEEVRRRGVESQMDREKLDEATREVYAREFYEGIMLETTGRFSGLKVAEAKEKVV 420 Query: 328 EDLKALGLLVKEEPHVHQVGHC---YRTHVPVEPYLSEQWFVRMDTMAQKALKAWEEGKI 384 E L+ G ++ +V +C RTHV + + +QWF+ KAL ++ Sbjct: 421 EWLEERGAALRIYTLPQEV-YCRCGARTHVKI---VEDQWFLLYSKPEWKALAREAVARM 476 Query: 385 QFFPRKWENTYTHWLRNIRDWCISRQLWWGHRIP---VWYCDDCGAQMVLREDPTSCT-S 440 +F P + + +RDW + + G +P W + + T + Sbjct: 477 EFLPGHVRRDFEAIIEALRDWAFTHKGELGTPLPWDREWVIESLSDSTIYMAYYTIAKYT 536 Query: 441 CGSTKIRQDEDVLDTWFSSWLWPFSTLGWPEET-----------EDLKR----FFPTTTL 485 K + ++L ++ F G P E E+++R ++P Sbjct: 537 QHPEKYGVEPEMLTPEVFDYV--FLGAGDPGEVSRRSGIPQGLLEEMRREFLYWYPLDMR 594 Query: 486 VTAYDIIFFWVARMIM-ASLEFMHEVPFRDIYITGLVRDKQGRKMSKSLGNGIDPLEIVE 544 ++ D+I + I + F E+ R I + G V G KMSKS GN I + ++ Sbjct: 595 ISGKDLIPNHLVFFIFHHTAIFPRELWPRAIGVNGWVL-VAGEKMSKSKGNFILLRQALD 653 Query: 545 EYGADALRFTLAFLAAQGQDVLLDKETFQVG-AHFANKIWNASRFILMNLEGRTLIPFEE 603 +GADA R+ G D LD F+ A A + + + GR Sbjct: 654 WWGADATRWAEVL---AGADSGLDDANFEPSVADSAVSLLSQWLDFVRENYGRP----AR 706 Query: 604 IETTDVDRWILHRLNQTIRTVRDALETYRFNEAAQTAYEFFWSDFCDWYIESAKRSLNGD 663 E VDRW RLN TI V +E F A A+ + + WY+ +G Sbjct: 707 REERWVDRWFESRLNSTIARVTRLMEEANFKTALVEAW-YKLQESYRWYLRR-----SGG 760 Query: 664 DEREKDRVVSLLLFVLEQALKLLHPFLPFVTEELYQKLPTTEGLLILAPFPEPREEWDDP 723 + RE LL +E L+ PF P EE ++ + EG A +PEP E P Sbjct: 761 EPRE-----DLLRRFIEVQTLLIAPFAPHTAEEAWEAM-GREGFASTASWPEPDESKISP 814 Query: 724 AAEASYAVLQEVVRGVRSLRSQF--------TIPPSVKFRVV--VRSDDERLRAYLEAHD 773 EA+ +Q V+ R + S T+ K+R V VR ER + EA Sbjct: 815 EVEAAEETVQAVLEDAREVLSLIGGADTLVVTVAAEWKYRAVEAVRRARERGASMKEALR 874 Query: 774 DLMKL 778 + K+ Sbjct: 875 EAFKV 879 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 925,843 Number of Sequences: 1700 Number of extensions: 43110 Number of successful extensions: 174 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 149 Number of HSP's gapped (non-prelim): 6 length of query: 882 length of database: 492,079 effective HSP length: 85 effective length of query: 797 effective length of database: 347,579 effective search space: 277020463 effective search space used: 277020463 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719497|ref|YP_003875029.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (412 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 368,421 Number of Sequences: 1700 Number of extensions: 14937 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 412 length of database: 492,079 effective HSP length: 79 effective length of query: 333 effective length of database: 357,779 effective search space: 119140407 effective search space used: 119140407 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719498|ref|YP_003875030.1| hypothetical protein STHERM_c18220 [Spirochaeta thermophila DSM 6192] (523 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 613,208 Number of Sequences: 1700 Number of extensions: 30180 Number of successful extensions: 87 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87 Number of HSP's gapped (non-prelim): 0 length of query: 523 length of database: 492,079 effective HSP length: 81 effective length of query: 442 effective length of database: 354,379 effective search space: 156635518 effective search space used: 156635518 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719499|ref|YP_003875031.1| hypothetical protein STHERM_c18230 [Spirochaeta thermophila DSM 6192] (183 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 176,859 Number of Sequences: 1700 Number of extensions: 7358 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 0 length of query: 183 length of database: 492,079 effective HSP length: 72 effective length of query: 111 effective length of database: 369,679 effective search space: 41034369 effective search space used: 41034369 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719500|ref|YP_003875032.1| hypothetical protein STHERM_c18240 [Spirochaeta thermophila DSM 6192] (164 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 158,122 Number of Sequences: 1700 Number of extensions: 6158 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 164 length of database: 492,079 effective HSP length: 70 effective length of query: 94 effective length of database: 373,079 effective search space: 35069426 effective search space used: 35069426 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719501|ref|YP_003875033.1| hypothetical protein STHERM_c18250 [Spirochaeta thermophila DSM 6192] (170 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.142 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 127,537 Number of Sequences: 1700 Number of extensions: 4175 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 170 length of database: 492,079 effective HSP length: 71 effective length of query: 99 effective length of database: 371,379 effective search space: 36766521 effective search space used: 36766521 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719502|ref|YP_003875034.1| hypothetical protein STHERM_c18260 [Spirochaeta thermophila DSM 6192] (702 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431525|ref|NP_148045.2| cysteinyl-tRNA synthetase [Aeropyr... 263 1e-71 >gi|118431525|ref|NP_148045.2| cysteinyl-tRNA synthetase [Aeropyrum pernix K1] Length = 472 Score = 263 bits (672), Expect = 1e-71 Identities = 174/490 (35%), Positives = 244/490 (49%), Gaps = 43/490 (8%) Query: 235 LRLFNTMGRIQEPFVPREAGKVGMYTCGPTVYNYAHIGNLRTYIFEDVLRRTLLHAGYRL 294 +R+FNT+GR +E F P VGMY CGPTVY+Y HIG+ RT+ D ++R L GY + Sbjct: 2 IRVFNTLGRRKEVFNPYSPPLVGMYVCGPTVYDYTHIGHARTFTVFDAIKRYLRLRGYDV 61 Query: 295 VHVMNVTDVGHLTSDGDEGEDKVIKAARERGMSVWEIAEFFTRAFFEDTDKLNIQRPEIV 354 HV N+TD+ +DK+I ARE G EI ++R + E L IQ Sbjct: 62 FHVQNITDI----------DDKIINRAREEGRDWREIVREYSRDYLEGLGSLGIQIDHHP 111 Query: 355 CKATEHIPEMIDLVKRLEERGHTYLA-GGNVYYDISTFPRYGELA-RLDEQDLRAGARVG 412 + T+HI ++I ++ L E+G+ Y+A G+VY+++ +P YG L+ L ++ R Sbjct: 112 -RVTDHISDIIRFIEGLIEKGYAYVAESGSVYFEVDKYPGYGMLSGHLSKEAWRQ--EED 168 Query: 413 VDAHKRSPRDFVLWFTRSKFEHQAMVWDSPWGRGYPGWHLECSAMSMKYLGEQFDIHCGG 472 V K+SP DF LW E W+SPWGRG PGWH+ECS MS +YLG + DIH GG Sbjct: 169 VLHEKKSPYDFALWKAAKPGEPS---WESPWGRGRPGWHIECSVMSSRYLGSRIDIHGGG 225 Query: 473 VDHIPVHHTNEIAQSEGATGKHPWVRYWLHAEFLVMDSGKMSKSKGNFLTL-SGLEEEGF 531 VD + HH NE AQSE G H WVRYWLHA +L + KMSKS GN + L L E G Sbjct: 226 VDLVFPHHENERAQSESYFG-HRWVRYWLHASYLTIKGEKMSKSLGNIIPLREALREWGP 284 Query: 532 HPLDYRYFCLGAHYRSQLFFS------WXXXXXXXXXXXXXI-EHLSGLHP--RDGWEQT 582 PL R + L +HYRS L +S + I L P R G + Sbjct: 285 GPL--RLWLLSSHYRSNLDYSEEALGQYRRLYERLRQAADSIGRRLERAEPKGRLGEGEL 342 Query: 583 RLSERGEAYMREFEEAIGDDLATPRALAVLWRALK---DEALPPEERAVLAVTMDRILGL 639 ER + +R + EA+ DD +A++ LW E E +L ++ + G Sbjct: 343 ETVERLKGVVRRWHEAMSDDFNMGKAMSSLWEFTTIYFREVEQTESYTLLWLSWRILTGF 402 Query: 640 SLAEAIASD---------DAXXXXXXXXXXXXXXXXKQRNFAEADRIRDELARRGIIVED 690 + A A D +++ + AD IR LA+ G ++ D Sbjct: 403 NSVYAFAPDIVEARRPERSLEDSLVQALVDVRSELRRRKMYDLADEIRSRLAQLGFVLHD 462 Query: 691 TPQGPRWKRK 700 + W+R+ Sbjct: 463 KGEKTEWRRR 472 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 685,526 Number of Sequences: 1700 Number of extensions: 29911 Number of successful extensions: 80 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72 Number of HSP's gapped (non-prelim): 1 length of query: 702 length of database: 492,079 effective HSP length: 83 effective length of query: 619 effective length of database: 350,979 effective search space: 217256001 effective search space used: 217256001 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719503|ref|YP_003875035.1| hypothetical protein STHERM_c18270 [Spirochaeta thermophila DSM 6192] (420 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.127 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 114,392 Number of Sequences: 1700 Number of extensions: 2717 Number of successful extensions: 7 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 420 length of database: 492,079 effective HSP length: 79 effective length of query: 341 effective length of database: 357,779 effective search space: 122002639 effective search space used: 122002639 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719504|ref|YP_003875036.1| hypothetical protein STHERM_c18280 [Spirochaeta thermophila DSM 6192] (657 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 699,526 Number of Sequences: 1700 Number of extensions: 33935 Number of successful extensions: 122 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 122 Number of HSP's gapped (non-prelim): 0 length of query: 657 length of database: 492,079 effective HSP length: 83 effective length of query: 574 effective length of database: 350,979 effective search space: 201461946 effective search space used: 201461946 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719505|ref|YP_003875037.1| acetate kinase [Spirochaeta thermophila DSM 6192] (444 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 450,954 Number of Sequences: 1700 Number of extensions: 20203 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 0 length of query: 444 length of database: 492,079 effective HSP length: 80 effective length of query: 364 effective length of database: 356,079 effective search space: 129612756 effective search space used: 129612756 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719506|ref|YP_003875038.1| hypothetical protein STHERM_c18300 [Spirochaeta thermophila DSM 6192] (182 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600627|ref|NP_147144.1| protease I [Aeropyrum pernix K1] 83 4e-18 >gi|14600627|ref|NP_147144.1| protease I [Aeropyrum pernix K1] Length = 180 Score = 83.2 bits (204), Expect = 4e-18 Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 4/152 (2%) Query: 1 MARVAVCLADGFEDVEAVTPIDLLRRXXXXXXXXXXXXXXXXXSRGVRIVTDALLSDLSP 60 M R + ADGFEDVE + P L G ++ ++ P Sbjct: 1 MPRALIISADGFEDVELLYPYYRLVEAGFETLVAAPSRGEIKGKMGYKVEAKLSFEEVKP 60 Query: 61 EDFDGMVLPGGMPGSSNLAASDAVRAWLSHCMKAGKTIGAICAAPAVVLGKAGLLEGRRF 120 E+FD +V+PGG + +A + H + K + IC P V++ AG+++GRR Sbjct: 61 EEFDVLVIPGGR-APERVRLHEAALNIVRHFFEKNKPVATICHGPQVLIS-AGVVKGRRL 118 Query: 121 TCYPGMEKEV--EGGTWEPSPVVKDGNLITSR 150 T Y G++ +V GG W PVV DGNL++SR Sbjct: 119 TSYWGVKDDVIAAGGNWVDEPVVVDGNLVSSR 150 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 193,423 Number of Sequences: 1700 Number of extensions: 8439 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 1 length of query: 182 length of database: 492,079 effective HSP length: 71 effective length of query: 111 effective length of database: 371,379 effective search space: 41223069 effective search space used: 41223069 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719507|ref|YP_003875039.1| primosomal protein N [Spirochaeta thermophila DSM 6192] (647 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 715,553 Number of Sequences: 1700 Number of extensions: 35057 Number of successful extensions: 120 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120 Number of HSP's gapped (non-prelim): 0 length of query: 647 length of database: 492,079 effective HSP length: 83 effective length of query: 564 effective length of database: 350,979 effective search space: 197952156 effective search space used: 197952156 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719508|ref|YP_003875040.1| hypothetical protein STHERM_c18320 [Spirochaeta thermophila DSM 6192] (253 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431039|ref|NP_147220.2| uracil-DNA glycosylase [Aeropyrum ... 174 1e-45 >gi|118431039|ref|NP_147220.2| uracil-DNA glycosylase [Aeropyrum pernix K1] Length = 227 Score = 174 bits (442), Expect = 1e-45 Identities = 100/198 (50%), Positives = 122/198 (61%), Gaps = 15/198 (7%) Query: 64 LGALHEQVRACNRCDLARTRRHAVPGIGRVGLPVMVVGEAPGADEDVKGEPFVGRAGQYL 123 L L E+VR C RC L TR HAVPG G VMVVGEAPG ED G PFVG AG+ L Sbjct: 6 LRQLEEEVRRCTRCPLHATRTHAVPGEGPGEAGVMVVGEAPGRMEDRLGRPFVGPAGKLL 65 Query: 124 DKWLAAIGLQRGRDVFITNVVKCRPPGNRDPRPDEISACLPFLEAQIALVRPRAILTVGR 183 D L GL RG +V+ITNVVKCRPPGNRDPR +EI ACLP+L QI+L+RPR ++ VGR Sbjct: 66 DSLLELAGLSRG-EVYITNVVKCRPPGNRDPREEEIEACLPYLVEQISLIRPRLVIAVGR 124 Query: 184 FAASTLLGTQ----EGISRLRGRVYRYR----DIPLVPTYHPSAVLRDPSLRRPVWEDL- 234 A TL G++R RGRV+R R ++ + TYHP+A L +P LR + D Sbjct: 125 HAGRTLFRLAGLRWPGLARARGRVWRGRIGGVELLIAVTYHPAAALYNPGLRGELERDFS 184 Query: 235 -----KLLSSVLRGEGAG 247 + ++ RG G G Sbjct: 185 GFIRRSVAEALSRGGGGG 202 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 284,224 Number of Sequences: 1700 Number of extensions: 13128 Number of successful extensions: 35 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 1 length of query: 253 length of database: 492,079 effective HSP length: 75 effective length of query: 178 effective length of database: 364,579 effective search space: 64895062 effective search space used: 64895062 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719509|ref|YP_003875041.1| hypothetical protein STHERM_c18330 [Spirochaeta thermophila DSM 6192] (248 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.139 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 230,287 Number of Sequences: 1700 Number of extensions: 8991 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 248 length of database: 492,079 effective HSP length: 75 effective length of query: 173 effective length of database: 364,579 effective search space: 63072167 effective search space used: 63072167 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719510|ref|YP_003875042.1| hypothetical protein STHERM_c18340 [Spirochaeta thermophila DSM 6192] (299 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 310,194 Number of Sequences: 1700 Number of extensions: 13544 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 299 length of database: 492,079 effective HSP length: 76 effective length of query: 223 effective length of database: 362,879 effective search space: 80922017 effective search space used: 80922017 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719511|ref|YP_003875043.1| holo-(acyl-carrier-protein) synthase [Spirochaeta thermophila DSM 6192] (125 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.144 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 139,113 Number of Sequences: 1700 Number of extensions: 5511 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 125 length of database: 492,079 effective HSP length: 67 effective length of query: 58 effective length of database: 378,179 effective search space: 21934382 effective search space used: 21934382 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719512|ref|YP_003875044.1| membrane associated protein [Spirochaeta thermophila DSM 6192] (322 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 344,401 Number of Sequences: 1700 Number of extensions: 16696 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 0 length of query: 322 length of database: 492,079 effective HSP length: 77 effective length of query: 245 effective length of database: 361,179 effective search space: 88488855 effective search space used: 88488855 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719513|ref|YP_003875045.1| hypothetical protein STHERM_c18370 [Spirochaeta thermophila DSM 6192] (265 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 222,839 Number of Sequences: 1700 Number of extensions: 8025 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 265 length of database: 492,079 effective HSP length: 75 effective length of query: 190 effective length of database: 364,579 effective search space: 69270010 effective search space used: 69270010 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719514|ref|YP_003875046.1| dihydropteroate synthase [Spirochaeta thermophila DSM 6192] (301 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 308,646 Number of Sequences: 1700 Number of extensions: 14247 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 301 length of database: 492,079 effective HSP length: 76 effective length of query: 225 effective length of database: 362,879 effective search space: 81647775 effective search space used: 81647775 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719515|ref|YP_003875047.1| 1-deoxy-D-xylulose-5-phosphate synthase [Spirochaeta thermophila DSM 6192] (631 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600816|ref|NP_147339.1| transketolase [Aeropyrum pernix K1] 76 2e-15 >gi|14600816|ref|NP_147339.1| transketolase [Aeropyrum pernix K1] Length = 322 Score = 76.3 bits (186), Expect = 2e-15 Identities = 76/310 (24%), Positives = 125/310 (40%), Gaps = 7/310 (2%) Query: 314 EKVTFTQAFSQALLCEASKDERITAITAAMETGTGLAPFRQAFPDRFYDVGIAEQHAVXX 373 + ++ +A + L AS+ E + + A TG ++ P R ++GI+EQ + Sbjct: 8 QMASYRKALGRLLARLASELEDLVVLDADTLRSTGAIEVYRSAPRRVLNMGISEQDLIGT 67 Query: 374 XXXXXXXXXXPVVALYSTFLQRAIDQVIHDVAIPKLPVVFAIDRAGLVPG-DGETHQGIF 432 PVV + FL R +Q+ + V L V GL P DG +HQ + Sbjct: 68 AAGIALAGLRPVVTGFGAFLMRGWEQIRNTVDRDGLNVKIVATHTGLSPHVDGSSHQVLE 127 Query: 433 DVPMLKAVPGMTILMPATADEMHLMLRWALER-GGPVALRYPKDVCLPPLSACEGELIPG 491 D+ +++++ + PA + W + R GP +R +D S E PG Sbjct: 128 DLALMRSLARTAVFSPADDVATVETVEWLVRRYRGPAYVRLGRDNAFRVYSEEEFTFRPG 187 Query: 492 RGVFLRETGEAHVLLVGAGGHLRXXXXXXXXXXXXXIPADVYHLRFLKPLDLVHLGKIFS 551 G L E GEA V L+ G + + V + +KP + + Sbjct: 188 GGEVLVEPGEA-VTLLATGPMVGVSLAAAALLRSEGLRVGVVDVYSIKPAPRRLVLEAAE 246 Query: 552 RYRGVYLLEDGVASGGVGETILAAVDVEG--VRLVHKGVPDEFPTHATR--QELLADYGL 607 R R + +E+ GG+G+ + + + EG R GVP ++R LL L Sbjct: 247 RSRLLVTVEEHRTVGGLGDVVSSILAEEGACARQARIGVPPGVYGSSSRDYMSLLRHLRL 306 Query: 608 DAAHIAELVR 617 D +A VR Sbjct: 307 DPESVAARVR 316 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 636,115 Number of Sequences: 1700 Number of extensions: 28832 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 71 Number of HSP's gapped (non-prelim): 1 length of query: 631 length of database: 492,079 effective HSP length: 83 effective length of query: 548 effective length of database: 350,979 effective search space: 192336492 effective search space used: 192336492 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719516|ref|YP_003875048.1| mrp-like protein [Spirochaeta thermophila DSM 6192] (336 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430945|ref|NP_147065.2| MRP/NBP35 family protein [Aeropyru... 103 8e-24 gi|118431673|ref|NP_148302.2| hypothetical protein APE_1979.1 [A... 50 6e-08 >gi|118430945|ref|NP_147065.2| MRP/NBP35 family protein [Aeropyrum pernix K1] Length = 309 Score = 103 bits (256), Expect = 8e-24 Identities = 65/213 (30%), Positives = 103/213 (48%), Gaps = 14/213 (6%) Query: 115 ALLAHLFHRLGAKVGVLDADIYGPNIPRLLPPVQG---PEAEGERIVPARTREGIVVMSV 171 A LA G +VGV DADI GP++ ++L G P + P GI V S+ Sbjct: 64 ASLAAALAAEGRRVGVFDADISGPSVHKMLGLQTGMGMPSQLDGTVKPVEVPPGIKVASI 123 Query: 172 GFLVEEGQA-LVWRGPMLHSMLQSLITQVEWPAXXXXXXXXXXGTGDVQLSASQLLP-LT 229 G L+ + L+WRG + S ++ L+ V+W GTGD L+ +Q++P +T Sbjct: 124 GLLLPMDEVPLIWRGAIKTSAIRELLAYVDWGELDYLLIDLPPGTGDEVLTITQIIPNIT 183 Query: 230 GALLVATPHPLAQEDLRRGVDAFKRLSVPLLGVIENMA---------GEVWGEGLTARTA 280 G L+V P +A+ +++ V KR+ P++G++ENM+ ++G G A Sbjct: 184 GFLVVTIPSEIAKSVVKKAVSFAKRIEAPVIGIVENMSYFRCSDGSIHYIFGRGAAEEIA 243 Query: 281 ESLGVPFLGSIPLSQEIAHAGVSGDFSFLDRGE 313 G+ LG IP+ I + G FL+ E Sbjct: 244 SQYGIELLGKIPIDPAIRESNDKGKIFFLENPE 276 >gi|118431673|ref|NP_148302.2| hypothetical protein APE_1979.1 [Aeropyrum pernix K1] Length = 138 Score = 50.4 bits (119), Expect = 6e-08 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 4/78 (5%) Query: 4 EAVYEVLSKVTDPELGRNIVELGFVKDLSIEDGR----IAFTLELTTPGCPLKETLTAQC 59 + + E L +V DPE+ N+ +LG + ++ +E R I + LT GCP+ L A Sbjct: 20 DRIVEALKEVYDPEIPVNVYDLGLIYEVRVEGPREKPRIKVKMSLTAIGCPVSVALPAYV 79 Query: 60 REALLSAFPEVREVDIRV 77 +A+ A PE +V++ V Sbjct: 80 EDAIREAVPEAEDVEVEV 97 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 330,201 Number of Sequences: 1700 Number of extensions: 14519 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 2 length of query: 336 length of database: 492,079 effective HSP length: 77 effective length of query: 259 effective length of database: 361,179 effective search space: 93545361 effective search space used: 93545361 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719517|ref|YP_003875049.1| small conductance mechanosensitive ion channel [Spirochaeta thermophila DSM 6192] (300 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431459|ref|NP_147944.2| small conductance mechanosensitive... 112 1e-26 gi|118431624|ref|NP_148223.2| small conductance mechanosensitive... 91 3e-20 >gi|118431459|ref|NP_147944.2| small conductance mechanosensitive channel MscS [Aeropyrum pernix K1] Length = 280 Score = 112 bits (280), Expect = 1e-26 Identities = 65/210 (30%), Positives = 95/210 (45%), Gaps = 2/210 (0%) Query: 56 VITRIVYYSGXXXXXXXXXXXXXXSPATLLXXXXXXXXXXXXXXQTSMSNLISGIFLLSE 115 ++ R YY LL Q SN SG++L E Sbjct: 60 LLARSTYYMVLFLTAVAALQALGVELTALLVAGGFAGLVLSLALQPLFSNFFSGLYLYGE 119 Query: 116 RPFSVGDLIKVGEFTGFVVSVDLLSVKVRTFDNRFVRIPSERLINQELVNITYYPIRRLD 175 + +GDLI +G F G VV + +S +VRT D VRIP+ R+IN +VN + +RRL Sbjct: 120 KSLVIGDLISIGGFIGRVVEISTMSTRVRTLDGEVVRIPNSRIINDYMVNYSKSAVRRLT 179 Query: 176 IDLSVAYKEDFTRVARILREVAEKNPYCLDEPEPLIVFKAFGASGIEIFFGVWFIKTDY- 234 S+AY+ED + + E L +P P + G SG+ I VW + TDY Sbjct: 180 FKASIAYREDIGKAINTISNALESIYLVLKDPSPEVYASELGDSGVIIDVKVW-VPTDYW 238 Query: 235 LKLKNSIMHEIKQRFDAEGIEIPFPHVSVY 264 + ++ +++ EGIEIPF V V+ Sbjct: 239 YQASMQVIKTVREALAREGIEIPFTQVDVW 268 >gi|118431624|ref|NP_148223.2| small conductance mechanosensitive channel MscS [Aeropyrum pernix K1] Length = 286 Score = 91.3 bits (225), Expect = 3e-20 Identities = 56/206 (27%), Positives = 88/206 (42%) Query: 54 SMVITRIVYYSGXXXXXXXXXXXXXXSPATLLXXXXXXXXXXXXXXQTSMSNLISGIFLL 113 ++ I+RI++Y+ + L QT SNLI+G+FL Sbjct: 57 AVAISRILFYTILFLTGVAALAQLGIDISVFLVAGGIVGIALGIASQTVASNLIAGVFLY 116 Query: 114 SERPFSVGDLIKVGEFTGFVVSVDLLSVKVRTFDNRFVRIPSERLINQELVNITYYPIRR 173 ERPF VGD + VG G V + +LS K+ +D RIP+E L + + RR Sbjct: 117 LERPFKVGDPVIVGSIGGVVYDISILSSKILKWDGVMARIPNEALFKSNVDVLNKSLARR 176 Query: 174 LDIDLSVAYKEDFTRVARILREVAEKNPYCLDEPEPLIVFKAFGASGIEIFFGVWFIKTD 233 ++ + V D+++ A I ++ P L EPEP + G E+ W Sbjct: 177 VEYRIPVKETSDYSKAAEIALNAIQEEPLALAEPEPQVFVDNISERGAELVVRFWAPSDQ 236 Query: 234 YLKLKNSIMHEIKQRFDAEGIEIPFP 259 + K ++ I +R G+EI P Sbjct: 237 WFNAKIKMLSIIVKRLLDAGVEITPP 262 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 240,174 Number of Sequences: 1700 Number of extensions: 9121 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 2 length of query: 300 length of database: 492,079 effective HSP length: 76 effective length of query: 224 effective length of database: 362,879 effective search space: 81284896 effective search space used: 81284896 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719518|ref|YP_003875050.1| hypothetical protein STHERM_c18420 [Spirochaeta thermophila DSM 6192] (261 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 301,236 Number of Sequences: 1700 Number of extensions: 14652 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 261 length of database: 492,079 effective HSP length: 75 effective length of query: 186 effective length of database: 364,579 effective search space: 67811694 effective search space used: 67811694 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719519|ref|YP_003875051.1| isocitrate dehydrogenase [Spirochaeta thermophila DSM 6192] (402 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431155|ref|NP_147421.2| isocitrate dehydrogenase [Aeropyru... 393 e-111 >gi|118431155|ref|NP_147421.2| isocitrate dehydrogenase [Aeropyrum pernix K1] Length = 432 Score = 393 bits (1009), Expect = e-111 Identities = 205/405 (50%), Positives = 268/405 (66%), Gaps = 7/405 (1%) Query: 2 GEKIRKEAGGLVVPNEPVIPFIQGDGTGPDIWRAAVRVFDAAVQKAYGGRRKVAWMEVLA 61 G + G L VP+ PV+ FI+GDG GP++ +A++V DAAV+K YGG R++ W E+LA Sbjct: 17 GSLVEYSGGSLRVPDNPVVAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLA 76 Query: 62 GERAYREKGTWLPDETLEAFKEYLVGIKGPLTTPVGGGFRSLNVTLRQMLDLYVCLRPVK 121 G A + G LP TLE + V +KGPL TPVG G+RSLNV +RQ LDLY +RPV+ Sbjct: 77 GHLAREKCGELLPKATLEGIRLARVALKGPLETPVGTGYRSLNVAIRQALDLYANIRPVR 136 Query: 122 YYPGIPSPVRHPELVDMVVFRENTEDVYAGFELPSGDERTKRLIDFCRREFGWQIREDSG 181 YY G P+P ++ + VDMV+FRENTEDVYAG E P R+ F EFG IRED+G Sbjct: 137 YY-GQPAPHKYADRVDMVIFRENTEDVYAGIEWPHDSPEAARIRRFLAEEFGISIREDAG 195 Query: 182 IGVKPISPTGTKRLVRAAIRYALDHGRRSVTLVHKGNIMKYTEGAFRAWGYEVAKEQFGD 241 IGVKPIS T+RL+ A+ +AL +G VT++HKGNIMKYTEGAF W YEVA E+F + Sbjct: 196 IGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFRE 255 Query: 242 RVVIWGDVPD---GVVPEGKVLVKDAIADAFLQQILTRPAEFDVIATMNLNGDYISDALA 298 VV +V + GV PEGK+LV D IAD LQQI+TRP ++ VI NLNGDYISDA + Sbjct: 256 HVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAAS 315 Query: 299 AQVXXXXXXXXXXXXYETGHAIFEATHGTAPKYAGKDMVNPSSVILSGKMMF-EYLGWHE 357 A V G A+ E HGTAPKYAGKD++NPS+ ILS ++ E++GW E Sbjct: 316 ALVGGIGMAAGMNMG--DGIAVAEPVHGTAPKYAGKDLINPSAEILSASLLIGEFMGWRE 373 Query: 358 AAALIEKGLTGAIASRKVTYDFARLMEGAEQVSTSEFGNQIIAHM 402 +++E + A+ S+KVT D AR M G + + TSE+ +IA++ Sbjct: 374 VKSIVEYAIRKAVQSKKVTQDLARHMPGVQPLRTSEYTETLIAYI 418 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 436,456 Number of Sequences: 1700 Number of extensions: 21272 Number of successful extensions: 75 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 1 length of query: 402 length of database: 492,079 effective HSP length: 79 effective length of query: 323 effective length of database: 357,779 effective search space: 115562617 effective search space used: 115562617 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719520|ref|YP_003875052.1| lipoprotein [Spirochaeta thermophila DSM 6192] (352 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 348,924 Number of Sequences: 1700 Number of extensions: 14847 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 352 length of database: 492,079 effective HSP length: 78 effective length of query: 274 effective length of database: 359,479 effective search space: 98497246 effective search space used: 98497246 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719521|ref|YP_003875053.1| transglycosylase [Spirochaeta thermophila DSM 6192] (452 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 489,165 Number of Sequences: 1700 Number of extensions: 21750 Number of successful extensions: 72 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72 Number of HSP's gapped (non-prelim): 0 length of query: 452 length of database: 492,079 effective HSP length: 80 effective length of query: 372 effective length of database: 356,079 effective search space: 132461388 effective search space used: 132461388 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719522|ref|YP_003875054.1| OmpA family protein [Spirochaeta thermophila DSM 6192] (284 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 274,447 Number of Sequences: 1700 Number of extensions: 11174 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 284 length of database: 492,079 effective HSP length: 76 effective length of query: 208 effective length of database: 362,879 effective search space: 75478832 effective search space used: 75478832 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719523|ref|YP_003875055.1| hypothetical protein STHERM_c18470 [Spirochaeta thermophila DSM 6192] (422 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431133|ref|NP_147379.2| succinyl-diaminopimelate desucciny... 99 3e-22 gi|14601719|ref|NP_148260.1| peptidase [Aeropyrum pernix K1] 54 7e-09 >gi|118431133|ref|NP_147379.2| succinyl-diaminopimelate desuccinylase [Aeropyrum pernix K1] Length = 419 Score = 98.6 bits (244), Expect = 3e-22 Identities = 109/418 (26%), Positives = 178/418 (42%), Gaps = 45/418 (10%) Query: 21 VELQRLLTSHPALSPEVGGRGEWEKAQALVEWLEAHLLREAREKGVAASLSVVEVPDERA 80 V++ + L S P ++P+ GE A+ L LE+ E+ + E E+ Sbjct: 18 VDVLKRLISIPTVAPQGDHYGE--AAELLARELESLGFETVVERVPS------EYQREKC 69 Query: 81 ERGSRPSILVELWHDRNGPAFWIMTHLDVVPPGEVALWN-GDPFTAVVKDGRIYGRGTED 139 S + GPA H DVVP G W+ +PF VVKDG++YGRG D Sbjct: 70 RHASDNPRFIVYGRRGEGPALHFNGHYDVVPGGPG--WSVTEPFKPVVKDGKLYGRGAID 127 Query: 140 NQQSMTSSIFAARALVALGLAPE-RPLKLLFVADEEFGNRYGIQALVTSHRSLFKEGDVF 198 + + +++ A +AL G P+ ++ FV DEE G G LV + Sbjct: 128 MKGGIAAALGAFKALHLSGAWPQGLRVEAAFVPDEEIGGECGTGYLVNG---------MG 178 Query: 199 LVPD-GGLPDGSMIEV---AEKQLLWLKFTTRGRQCHASRPDLGKNAFVAASDLVVRLSR 254 + P+ LP+ S +E + +LW+K +GR HAS P G+NAF+ AS + + L + Sbjct: 179 VTPEYVVLPEPSGLEKPWHGHRGILWMKVRVKGRTAHASTPWHGRNAFLLASAIALDLQQ 238 Query: 255 -LDERFP-RRNDLFVPPCSTFVPSRKDPNVPNI------NTVPGEDVFYMDCRVLPEVDL 306 L + RR+ + P + P+ + N VPGE F +D R++PE + Sbjct: 239 ALASMYAGRRSRHRIEPEESAKPTVSLGGEAGVTGGGKTNQVPGEFYFTVDRRLIPEETV 298 Query: 307 AEVMGAIEALCREVEAVYGVEISVEVIQRIVSRPTPADAP--LVDVLKAAVKEVYGVEAR 364 ++ + + + +G E+ E ++S + P L + L+ A + Sbjct: 299 SQARDELLGVLTWLSVKHGAEVEAE---EVISAEPAINEPGELYEALREAASQSGRSIGE 355 Query: 365 PMGIGGGTVAAPLRNEGFDCVVWSTVDETAHQPNEYCVIEHMVKDAGVMALLALRFRR 422 P+ GG +G + + E AH P+E+ D G + L F R Sbjct: 356 PVVCPGGLDMWYYTVKGSKALAYGPRGELAHAPDEHI-------DLGELRFLVETFAR 406 >gi|14601719|ref|NP_148260.1| peptidase [Aeropyrum pernix K1] Length = 441 Score = 53.9 bits (128), Expect = 7e-09 Identities = 40/109 (36%), Positives = 51/109 (46%), Gaps = 9/109 (8%) Query: 99 PAFWIMTHLDVVPPGEVALWN-GDPFTAVVKDGRIYGRGTEDNQQSMTSSIFAARALVAL 157 P M H DVVPPG W +PF VVK GR+YGRG D++ ++ AA +L Sbjct: 66 PVTLFMAHFDVVPPGPG--WRVTEPFKPVVKGGRLYGRGAADDKSNV-----AAISLALS 118 Query: 158 GLAPERPLKLL-FVADEEFGNRYGIQALVTSHRSLFKEGDVFLVPDGGL 205 G P R ++ F DEE G G L RS D + DG + Sbjct: 119 GFEPGRGTVIIAFTGDEEIGGERGAGWLAGRLRSEGLWPDYVVNGDGSM 167 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 459,305 Number of Sequences: 1700 Number of extensions: 21506 Number of successful extensions: 76 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 71 Number of HSP's gapped (non-prelim): 3 length of query: 422 length of database: 492,079 effective HSP length: 79 effective length of query: 343 effective length of database: 357,779 effective search space: 122718197 effective search space used: 122718197 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719524|ref|YP_003875056.1| hypothetical protein STHERM_c18480 [Spirochaeta thermophila DSM 6192] (205 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 227,133 Number of Sequences: 1700 Number of extensions: 10390 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 205 length of database: 492,079 effective HSP length: 73 effective length of query: 132 effective length of database: 367,979 effective search space: 48573228 effective search space used: 48573228 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719525|ref|YP_003875057.1| transcriptional repressor [Spirochaeta thermophila DSM 6192] (371 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 426,910 Number of Sequences: 1700 Number of extensions: 20785 Number of successful extensions: 63 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63 Number of HSP's gapped (non-prelim): 0 length of query: 371 length of database: 492,079 effective HSP length: 78 effective length of query: 293 effective length of database: 359,479 effective search space: 105327347 effective search space used: 105327347 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719526|ref|YP_003875058.1| beta-xylosidase [Spirochaeta thermophila DSM 6192] (548 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.143 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 672,422 Number of Sequences: 1700 Number of extensions: 34083 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 548 length of database: 492,079 effective HSP length: 81 effective length of query: 467 effective length of database: 354,379 effective search space: 165494993 effective search space used: 165494993 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719527|ref|YP_003875059.1| transporter [Spirochaeta thermophila DSM 6192] (287 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 99 9e-23 gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum... 43 8e-06 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 99.4 bits (246), Expect = 9e-23 Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 9/268 (3%) Query: 16 VVVYLFLIILAVICLLPFYITFVNATRSSMEI--NQXXXXXXXXXXXKNFITLWGKGKGE 73 V++ L A++ LLPF F+ + R E+ N+I W + Sbjct: 16 VLINLLAWGFALVWLLPFIGLFMVSVRPYGEVIVKGWWNIVDATFTMDNYIKAWSY---D 72 Query: 74 NLNIFRGLRNSFFVATSATLLGLYVAALAGFGFAFYNFPAKRFLFAVVLGVIMVPAQLGI 133 ++ G NS VA AT++ + A+ A +GF+ ++FP K +LF V + ++ +P Q+ + Sbjct: 73 PYSVSGGYINSLIVALPATVIPVAAASFAAYGFSRFSFPLKSYLFLVTILLMALPQQIVV 132 Query: 134 IGYFQLLSAYHMLDTFWALILPGGA--NAFAVFFLRQYASSIIDQEMLQAARIEGAGELR 191 + F LL +++TF +IL A A+ +FF++ + I+ +E+ +AAR++GA + R Sbjct: 133 VPLFLLLKNLGLINTFPGIILVHSAWGMAWIIFFMKNF-FDILPREVEEAARVDGASDFR 191 Query: 192 IFHWXXXXXXXXXXXXMGIFAFVGNWNNYLLPLVVLFSNEKFTVPIIIGQLNTSTYKTDF 251 IF+ + F W+++ L+ L K+ + I + TY D+ Sbjct: 192 IFYKIVLPMSLPGILSASVLQFTWVWSSFFFELIFLIDPSKWVITQRIANMK-GTYLVDW 250 Query: 252 GMXXXXXXXXXXXXXXVYSIASRFIIEG 279 G+ VY + R+ I G Sbjct: 251 GLIAAGSVFAMAVPLAVYMLLQRYYIRG 278 >gi|14601529|ref|NP_148069.1| ABC transporter permease [Aeropyrum pernix K1] Length = 270 Score = 43.1 bits (100), Expect = 8e-06 Identities = 52/226 (23%), Positives = 87/226 (38%), Gaps = 18/226 (7%) Query: 19 YLFLIILAVICLLPFYITFVNATRSSMEINQXXXXXXXXXXXKNFITLWGKGKGENLNIF 78 Y FL +L L+P I+ V A + +++ + TLW G GE Sbjct: 14 YAFLAVLVSWILVPLAISIVYAF-TPLDVYYSNAILTTSFTLDHVKTLWILGAGEAF--- 69 Query: 79 RGLRNSFFVATSATLLGL--YVAALAGFGFAFYNFPAKRFLFAVVLGVIMVPAQLGIIGY 136 LR+ VA A +G+ + G+ A Y FP + + ++ M P + + Sbjct: 70 --LRS---VAVGAMTVGISFLLGLPGGYALARYVFPGRDAVKLAIIATRMFPIIVISVSL 124 Query: 137 FQLLSAYHMLDTFWALILPGGANAFAVFFLRQYASSI---IDQEMLQAARIEGAGELRIF 193 + + DT L L A A+ F+ SI I +++ +A I G + +F Sbjct: 125 LKTFFNLGLNDTLIGLAL--AHTAMALPFVVIITGSIFGGIPRDLEEAGMIFGLSSIMVF 182 Query: 194 HWXXXXXXXXXXXXMGIFAFVGNWNNYLLPLVVLFSNEKFTVPIII 239 G+F F+ +WN + V+ N T+P I Sbjct: 183 LRITLPLAAPGLTAAGMFTFLLSWNEVFMASVLTLVNR--TLPAFI 226 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.145 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 233,466 Number of Sequences: 1700 Number of extensions: 8955 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 2 length of query: 287 length of database: 492,079 effective HSP length: 76 effective length of query: 211 effective length of database: 362,879 effective search space: 76567469 effective search space used: 76567469 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719528|ref|YP_003875060.1| transporter [Spirochaeta thermophila DSM 6192] (301 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 94 4e-21 gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyru... 55 2e-09 gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum... 54 6e-09 gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyru... 42 2e-05 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 94.0 bits (232), Expect = 4e-21 Identities = 68/272 (25%), Positives = 121/272 (44%), Gaps = 23/272 (8%) Query: 1 MEGTVKRYLQIVGLGFVAPFFLFLIVFQFYPIINTLMLSFTNYDGLKKMDWVGLKNYADL 60 M G + Y + L F+ P F F+ +F P I T+ LS N DG + L+ YA++ Sbjct: 1 MAGPPRGYFK--ALVFLLPAFTFITIFVIAPSIATVYLSL-NVDG-----HINLEKYAEV 52 Query: 61 IVDKYFWLAFLNT--------WRIWLPNILMQXXXXXXXXXXXTDIRYRIK---GISVFR 109 + ++ A + W + NI+ + Y +K G S+ + Sbjct: 53 VSERSPDKALIMITSRPESPPWGALIHNIIWMALHIPLVTFLGLFLAYLLKYTFGSSIVK 112 Query: 110 AVYYFPNLVTAATIALLINVLLDWKHGALNQILFGANEEAFI--DWFRDPVRTQFIVSIV 167 + + ++ L++ + D G + ++F A F+ W P + + + Sbjct: 113 TIVFIGMVIPMVVGGLIVRFMFDEYVGVV-PLVFKALGVDFLAKTWTNYPQLSLLSLILG 171 Query: 168 QTWLWFGYTAIILTTGIQGIPKTYYEAAYVDGASAWQAFWSITMPLLAPVITFVLITSLI 227 WLW G++ + + + IP ++ EAA +DGA W FW I PL+ P V++ +++ Sbjct: 172 SVWLWTGFSLTVYSAALGSIPSSFIEAARIDGAGHWHIFWKIVFPLVRPATIIVVVMTML 231 Query: 228 GGMQIFDIPYILRMGLAGESGQAVTTTVIYLY 259 ++IFDI Y+ +G G S V V+Y Y Sbjct: 232 WDLKIFDIVYVATLGGPGGSSN-VLALVMYQY 262 >gi|118431797|ref|NP_148491.2| ABC transporter permease [Aeropyrum pernix K1] Length = 314 Score = 55.1 bits (131), Expect = 2e-09 Identities = 70/280 (25%), Positives = 114/280 (40%), Gaps = 28/280 (10%) Query: 16 FVAPFFLFLIVFQFYPIINTLMLSFTNYDGLKK----MDWVGLKNYADLI----VDKYFW 67 F+ P L +I F F P++ T+ SFTN D VGL NY L+ D F Sbjct: 12 FLGPALLIVITFFFLPLLLTVYTSFTNMRNWNVDAYLFDIVGLYNYKVLVHFAKYDPMFR 71 Query: 68 LAFLNTWRIWLPNILMQXXXXXXXXXXXTDIRYRIKGISVFRAVYYFPNLVTAATIALLI 127 A + T +++ + RI +R ++ P + A +LL Sbjct: 72 NALITTVVFVAVTLVVNVLGGLTLAILTFFLEERIS--IHYRLLWLLPRMTPVAVYSLL- 128 Query: 128 NVLLDWKH-------GALNQILFGANE-EAFIDW--FRDPVRTQFIVSIVQTWLWFGYTA 177 W + G LN+IL A + I+W + P+ T +I+ V + + Sbjct: 129 -----WYYFFHSDAIGTLNRILLLAGVIDKPINWGSYMLPLGTWWILIFVNGLVGVSFGM 183 Query: 178 IILTTGIQGIPKTYYEAAYVDGASAWQAFWSITMPLLAPVITFVLITSLIGGMQIFDIPY 237 I+ + I+ IP Y AA VDGAS I +P++ + FV + ++ + + + Sbjct: 184 IVFYSAIRSIPWEYIAAARVDGASNLVIIRRIIVPMIRWHLLFVTVWQMLSLLTTYTHIF 243 Query: 238 IL-RMGLAGES-GQAVTTTVIYLYDRGFRYHRMGYAASVA 275 +L G+ + GQ + V L R G AA+ A Sbjct: 244 LLYEWGVVDRTWGQTWSLLVFNLAFLPVGELRQGLAAAAA 283 >gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum pernix K1] Length = 288 Score = 53.5 bits (127), Expect = 6e-09 Identities = 56/226 (24%), Positives = 94/226 (41%), Gaps = 11/226 (4%) Query: 17 VAPFFLFLIVFQFYPIINTLMLSFTNYDGLKKMDWVGLKNYADLIVDKYFWLAFLNTWRI 76 ++P L+L VF YPII++ ++F +G + V Y+ L FW A T+ Sbjct: 18 LSPTILYLAVFIAYPIIDSFRIAFVK-NGSISFEAVDFLLYSPL---SEFWSALKYTF-- 71 Query: 77 WLPNILMQXXXXXXXXXXXTDIRYRIKGISVFRAVYYFPNLVTAATIALLINVLLDWKHG 136 L IL+ + R +G V P ++ L+ +L K G Sbjct: 72 -LLAILVIPTETLLALTAVILLFKRFRGRDAVIYVLVMPLALSDLAAGLIWYSMLTGK-G 129 Query: 137 ALNQILFGA---NEEAFIDWFRDPVRTQFIVSIVQTWLWFGYTAIILTTGIQGIPKTYYE 193 LN++L ++ + + T V + + W +IL G Q I K +E Sbjct: 130 FLNKLLLNMGLISDPIIFFGYENRWLTFLAVYLAEVWRSTAIVFVILFAGAQLINKEVFE 189 Query: 194 AAYVDGASAWQAFWSITMPLLAPVITFVLITSLIGGMQIFDIPYIL 239 AA V GAS + I +P++ P + L+ + Q+F + +IL Sbjct: 190 AAEVFGASFYVKLRHILIPMIKPSLQAALLIRTLFAFQVFAVVWIL 235 >gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyrum pernix K1] Length = 302 Score = 41.6 bits (96), Expect = 2e-05 Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 21/144 (14%) Query: 99 RYRIKGISVFRA----VYYFPNLVTAATIALLINVLLDWKHGALNQILFGANEEAFIDWF 154 R KG VF A ++ FP +AL+I V + ++ + +L EE + + Sbjct: 115 RMEFKGRGVFTAGLIMLHAFPG------VALIIGVYMIFR--IIGDVLGVLGEEFYAIAY 166 Query: 155 RDPVRTQFIVSIVQTWLWFGYTAIILTTGIQGIPKTYYEAAYVDGASAWQAFWSITMPLL 214 R V + WL+ G+ IP +A VDGAS + +WSI +PL+ Sbjct: 167 IILARAALEVPMA-IWLFKGF--------FDKIPWELEWSALVDGASRVRVWWSILVPLV 217 Query: 215 APVITFVLITSLIGGMQIFDIPYI 238 P I VLI + + G + F Y+ Sbjct: 218 KPGIAAVLIFTFLAGWEEFIYFYV 241 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.144 0.468 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 281,324 Number of Sequences: 1700 Number of extensions: 11463 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 48 Number of HSP's gapped (non-prelim): 4 length of query: 301 length of database: 492,079 effective HSP length: 76 effective length of query: 225 effective length of database: 362,879 effective search space: 81647775 effective search space used: 81647775 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719529|ref|YP_003875061.1| multiple sugar binding protein [Spirochaeta thermophila DSM 6192] (420 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 413,217 Number of Sequences: 1700 Number of extensions: 18593 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 420 length of database: 492,079 effective HSP length: 79 effective length of query: 341 effective length of database: 357,779 effective search space: 122002639 effective search space used: 122002639 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719530|ref|YP_003875062.1| hypothetical protein STHERM_c18540 [Spirochaeta thermophila DSM 6192] (337 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431338|ref|NP_147736.2| deoxyribonucleotide triphosphate p... 78 3e-16 >gi|118431338|ref|NP_147736.2| deoxyribonucleotide triphosphate pyrophosphatase [Aeropyrum pernix K1] Length = 188 Score = 78.2 bits (191), Expect = 3e-16 Identities = 65/186 (34%), Positives = 93/186 (50%), Gaps = 14/186 (7%) Query: 146 IYLASNNRHKKEEIAXXXXXXXXXXXEDAGIEFHCEERGATFLENALTKAQTLYDLVKAP 205 I L + NR K EE A E A + E + + E AL A+ Y ++ P Sbjct: 5 ILLVTGNRGKLEE-AREVLREYGVEVEQAQA-WKLEVQSESLEEIALRAARVAYAQLRRP 62 Query: 206 VLADDSGLSVEALGGAPGVRSARFGEEAGRSLSTEEKNALLLRMLHGESDRRAAFVSCMV 265 + +D+GL + AL G PG S+ + G +LR+L G +DR A F + V Sbjct: 63 LAVEDAGLFINALNGFPGPYSSYAYKTIGIPG--------VLRLLEGAADRGACFKAA-V 113 Query: 266 LLLSPQRFYIVQETLEGAIAHEARGTHGFGYDPIFLLPDG--RHLAELSLEEKNRISHRG 323 ++P + + G+IA E RG+ GFG+DPIF +P+G AEL KNRISHR Sbjct: 114 AYVAPLVERVFTGEVCGSIAREPRGSQGFGFDPIF-VPEGYSSTFAELGPGVKNRISHRA 172 Query: 324 KAARKL 329 +A R+L Sbjct: 173 RAFRRL 178 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 262,568 Number of Sequences: 1700 Number of extensions: 9793 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 1 length of query: 337 length of database: 492,079 effective HSP length: 77 effective length of query: 260 effective length of database: 361,179 effective search space: 93906540 effective search space used: 93906540 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719531|ref|YP_003875063.1| oligoendopeptidase F [Spirochaeta thermophila DSM 6192] (600 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 638,598 Number of Sequences: 1700 Number of extensions: 30518 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61 Number of HSP's gapped (non-prelim): 0 length of query: 600 length of database: 492,079 effective HSP length: 82 effective length of query: 518 effective length of database: 352,679 effective search space: 182687722 effective search space used: 182687722 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719532|ref|YP_003875064.1| hypothetical protein STHERM_c18560 [Spirochaeta thermophila DSM 6192] (532 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.143 0.469 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 543,969 Number of Sequences: 1700 Number of extensions: 24315 Number of successful extensions: 84 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84 Number of HSP's gapped (non-prelim): 0 length of query: 532 length of database: 492,079 effective HSP length: 81 effective length of query: 451 effective length of database: 354,379 effective search space: 159824929 effective search space used: 159824929 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719533|ref|YP_003875065.1| DNA-binding protein HbbU [Spirochaeta thermophila DSM 6192] (102 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,935 Number of Sequences: 1700 Number of extensions: 3441 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 102 length of database: 492,079 effective HSP length: 64 effective length of query: 38 effective length of database: 383,279 effective search space: 14564602 effective search space used: 14564602 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719534|ref|YP_003875066.1| 30S ribosomal protein S20 [Spirochaeta thermophila DSM 6192] (88 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.124 0.323 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,799 Number of Sequences: 1700 Number of extensions: 1769 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 88 length of database: 492,079 effective HSP length: 57 effective length of query: 31 effective length of database: 395,179 effective search space: 12250549 effective search space used: 12250549 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719535|ref|YP_003875067.1| hypothetical protein STHERM_c18590 [Spirochaeta thermophila DSM 6192] (56 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.137 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,656 Number of Sequences: 1700 Number of extensions: 1009 Number of successful extensions: 2 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 56 length of database: 492,079 effective HSP length: 28 effective length of query: 28 effective length of database: 444,479 effective search space: 12445412 effective search space used: 12445412 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719536|ref|YP_003875068.1| hypothetical protein STHERM_c18600 [Spirochaeta thermophila DSM 6192] (307 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 315,467 Number of Sequences: 1700 Number of extensions: 13741 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 307 length of database: 492,079 effective HSP length: 77 effective length of query: 230 effective length of database: 361,179 effective search space: 83071170 effective search space used: 83071170 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719537|ref|YP_003875069.1| hypothetical protein STHERM_c18610 [Spirochaeta thermophila DSM 6192] (166 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 165,980 Number of Sequences: 1700 Number of extensions: 6650 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 166 length of database: 492,079 effective HSP length: 70 effective length of query: 96 effective length of database: 373,079 effective search space: 35815584 effective search space used: 35815584 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719538|ref|YP_003875070.1| hypothetical protein STHERM_c18620 [Spirochaeta thermophila DSM 6192] (126 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 132,390 Number of Sequences: 1700 Number of extensions: 5803 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 126 length of database: 492,079 effective HSP length: 67 effective length of query: 59 effective length of database: 378,179 effective search space: 22312561 effective search space used: 22312561 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719539|ref|YP_003875071.1| M23/M37 peptidase domain-containing protein [Spirochaeta thermophila DSM 6192] (344 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 300,327 Number of Sequences: 1700 Number of extensions: 12309 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 0 length of query: 344 length of database: 492,079 effective HSP length: 78 effective length of query: 266 effective length of database: 359,479 effective search space: 95621414 effective search space used: 95621414 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719540|ref|YP_003875072.1| hypothetical protein STHERM_c18640 [Spirochaeta thermophila DSM 6192] (257 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431035|ref|NP_147217.2| deoxyribonuclease [Aeropyrum perni... 52 1e-08 >gi|118431035|ref|NP_147217.2| deoxyribonuclease [Aeropyrum pernix K1] Length = 246 Score = 52.4 bits (124), Expect = 1e-08 Identities = 69/240 (28%), Positives = 107/240 (44%), Gaps = 30/240 (12%) Query: 1 MRLFDSHAHIGLIHEDPIEQLIVVQEAKQAGVVGIVSICNSLRDFSTVYENLKSV----S 56 MR++D H H+ + +E+++ +A ++ VV VS D + + L Sbjct: 1 MRVYDMHVHLHEYSDREVEEIL---DADKSLVVVAVS-----DDLESAWRTLDLWHTFGG 52 Query: 57 HVYHAVGVAPSEVTSPGRDWELKIEESVRLPR---VVAIGETGLDYYRKFGDRDS---QI 110 V +G P V GR WE E +RL V +GE GLD R+F D + Q Sbjct: 53 RVVPCLGFHPWNVRE-GRVWEAW--EVLRLAYRYGVPCLGEVGLD--RRFVDEYTWRVQN 107 Query: 111 ELFIRQLELAEKFDLPVIIHNREAGKDVLEILREKLPPRGGILHCFSENWDFARKALELN 170 E+F ++LAE + + IH +A K V + R + H ++ R E Sbjct: 108 EVFDAFVQLAEDMGVMLNIHAPDAWKHVAHRIGWTSRARF-MYHWYTGPATLPRALPEGR 166 Query: 171 LYISFAGNVTYRNARDLQEVARKIPLDRMLVETESPFMVPSVYRGKRNRPSYLAETVKFL 230 ++ S N R VAR+IPL ++VE++ P+ YRG R P + ETVK + Sbjct: 167 VWFSI--NSAIRVQEKSVRVAREIPLRSLVVESDGPYN----YRGLRLSPLMVRETVKLV 220 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 234,097 Number of Sequences: 1700 Number of extensions: 9920 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 1 length of query: 257 length of database: 492,079 effective HSP length: 75 effective length of query: 182 effective length of database: 364,579 effective search space: 66353378 effective search space used: 66353378 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719541|ref|YP_003875073.1| hypothetical protein STHERM_c18650 [Spirochaeta thermophila DSM 6192] (333 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 344,524 Number of Sequences: 1700 Number of extensions: 15179 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 0 length of query: 333 length of database: 492,079 effective HSP length: 77 effective length of query: 256 effective length of database: 361,179 effective search space: 92461824 effective search space used: 92461824 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719542|ref|YP_003875074.1| rRNA methylase [Spirochaeta thermophila DSM 6192] (241 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 240,001 Number of Sequences: 1700 Number of extensions: 10190 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 241 length of database: 492,079 effective HSP length: 74 effective length of query: 167 effective length of database: 366,279 effective search space: 61168593 effective search space used: 61168593 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719543|ref|YP_003875075.1| hypothetical protein STHERM_c18670 [Spirochaeta thermophila DSM 6192] (147 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.142 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 156,232 Number of Sequences: 1700 Number of extensions: 7184 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 147 length of database: 492,079 effective HSP length: 69 effective length of query: 78 effective length of database: 374,779 effective search space: 29232762 effective search space used: 29232762 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719544|ref|YP_003875076.1| chaperone protein DnaJ [Spirochaeta thermophila DSM 6192] (384 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 359,754 Number of Sequences: 1700 Number of extensions: 16143 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 384 length of database: 492,079 effective HSP length: 78 effective length of query: 306 effective length of database: 359,479 effective search space: 110000574 effective search space used: 110000574 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719545|ref|YP_003875077.1| chaperone protein Dank [Spirochaeta thermophila DSM 6192] (635 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 536,624 Number of Sequences: 1700 Number of extensions: 22828 Number of successful extensions: 68 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 0 length of query: 635 length of database: 492,079 effective HSP length: 83 effective length of query: 552 effective length of database: 350,979 effective search space: 193740408 effective search space used: 193740408 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719546|ref|YP_003875078.1| protein GrpE [Spirochaeta thermophila DSM 6192] (245 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.308 0.127 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 256,731 Number of Sequences: 1700 Number of extensions: 11683 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 245 length of database: 492,079 effective HSP length: 74 effective length of query: 171 effective length of database: 366,279 effective search space: 62633709 effective search space used: 62633709 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719547|ref|YP_003875079.1| cytoskeletal protein [Spirochaeta thermophila DSM 6192] (1689 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601261|ref|NP_147796.1| surface layer protein [Aeropyrum pe... 64 4e-11 gi|14601265|ref|NP_147800.1| hypothetical protein APE_1221 [Aero... 60 4e-10 gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aero... 59 1e-09 gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad5... 54 4e-08 gi|14600971|ref|NP_147497.1| hypothetical protein APE_0790 [Aero... 47 5e-06 >gi|14601261|ref|NP_147796.1| surface layer protein [Aeropyrum pernix K1] Length = 533 Score = 63.5 bits (153), Expect = 4e-11 Identities = 74/309 (23%), Positives = 140/309 (45%), Gaps = 47/309 (15%) Query: 611 ARDMVEHGFAKIRAVLQQREQQVEKELERVLDEAASWEERLSLRMEALEQGVGERVAAME 670 AR++ E + A L++R VE+ +E L L +++LE+ VG+ A+E Sbjct: 227 AREIAEEVASAYVAPLEERLSLVEQAVED-----------LGLALDSLEERVGDLEFAVE 275 Query: 671 GRVARLEELQDSRLGGLR---TELEARLEEVREGLLADVDGFVQESRDWLERVRGELDAT 727 +L L DSR+G L ++E RLE V EG L D+ G V L+ + +L++ Sbjct: 276 DLTLQLSSL-DSRVGALEDRVADIEGRLEAV-EGSLEDLSGAVDAMSQQLQALAEDLES- 332 Query: 728 MGGVRERMKEYEAGLRDEVAALEGRVTXXXXXXXXXXXXXXXXXXNFEEEGRGRMAQVRE 787 + R+++ EA V ++E R++ E+ R+A+ + Sbjct: 333 ---LSSRVEDLEA----RVGSVEDRLSQAEEDIDSLTTSLDSLRTELEDLST-RLAEAQA 384 Query: 788 DLEQALVRLEQELSGAASAVEERGREMVGTVRSEVERMVREFG---REVEAFQE---RLQ 841 LE RL+Q AS +++ ++ + T ++ + + EVE Q+ + Sbjct: 385 SLEDLNTRLDQ----VASTLQQL-QQRLATAEESLQALTEDLASLQAEVETLQQSIVEID 439 Query: 842 GQLGQLDERIARWEAEVQ---ERLLGAEERVEGQLGDFEGRVVAFVRTHEERLGEVEARL 898 +LGQL + EV+ E+L+ AEE+ + R A + + ++ E+ +L Sbjct: 440 RRLGQLRSTVDAVRLEVESLGEKLVQAEEKNQ--------RQDASIEDFQSQIQELRTQL 491 Query: 899 EGRVRQVEE 907 + + R+ ++ Sbjct: 492 DEKTREAQQ 500 Score = 49.3 bits (116), Expect = 8e-07 Identities = 66/299 (22%), Positives = 118/299 (39%), Gaps = 97/299 (32%) Query: 981 DLEYRMRRVEGVSAQIQDLEDALSRMLEATRERIRQEQERFYQGLKEAGERDREAVFARM 1040 D+E R+ VEG + DA+S+ L+A E D E++ +R+ Sbjct: 297 DIEGRLEAVEGSLEDLSGAVDAMSQQLQALAE-------------------DLESLSSRV 337 Query: 1041 EEVRAELGTLQQEVEALKQEAYDRISSRLTAFEEGFFKDLEARGEELGARVAAWEEEFER 1100 E++ A +G+++ + +A + I S T+ + L E+L R+A Sbjct: 338 EDLEARVGSVEDRL----SQAEEDIDSLTTSLD-----SLRTELEDLSTRLA-------- 380 Query: 1101 KLVEVGXXXXXXXXXXXXTHTGQMRARLSELQTRLYSQLERFQDQVGQFEQSLRERLDAQ 1160 + +A L +L TRL DQV Q L++RL Sbjct: 381 ----------------------EAQASLEDLNTRL--------DQVASTLQQLQQRLATA 410 Query: 1161 EETLKGFQETIAARIEELRRQAEASVAQELAAHAQKVEEQILSHRADVDQRLDEVRERLR 1220 EE+L+ E +A+ L A + +++ I+ ++D+RL ++R + Sbjct: 411 EESLQALTEDLAS----------------LQAEVETLQQSIV----EIDRRLGQLRSTVD 450 Query: 1221 QHETSVEAV---LQAAREDLTRWQSDLAAKLSSARGDLSGQIDLLRSQMGESLQIIRET 1276 VE++ L A E R + + D QI LR+Q+ E + ++T Sbjct: 451 AVRLEVESLGEKLVQAEEKNQRQDASIE--------DFQSQIQELRTQLDEKTREAQQT 501 Score = 47.4 bits (111), Expect = 3e-06 Identities = 67/262 (25%), Positives = 116/262 (44%), Gaps = 39/262 (14%) Query: 1024 GLKEAGERDREAVFARMEEVRAELGTLQQEVEALKQEAYDRISSRLTAFEEGFFKDLEAR 1083 G +E E A A +EE L ++Q VE L A D + R+ E +DL + Sbjct: 226 GAREIAEEVASAYVAPLEE---RLSLVEQAVEDLGL-ALDSLEERVGDLEFAV-EDLTLQ 280 Query: 1084 GEELGARVAAWEE---EFERKLVEVGXXXXXXXXXXXXTHTGQMRARLSELQTRLYSQLE 1140 L +RV A E+ + E +L E + Q++A +L++ L S++E Sbjct: 281 LSSLDSRVGALEDRVADIEGRL-EAVEGSLEDLSGAVDAMSQQLQALAEDLES-LSSRVE 338 Query: 1141 RFQDQVGQFEQSLRERLDAQEETLKGFQETIAARIEELRRQAEASVAQELAAHAQKVEEQ 1200 + +VG S+ +RL EE + +++ ++ LR + E ++ LA +E Sbjct: 339 DLEARVG----SVEDRLSQAEEDI----DSLTTSLDSLRTELE-DLSTRLAEAQASLE-- 387 Query: 1201 ILSHRADVDQRLDEVR---ERLRQHETSVEAVLQAAREDLTRWQSDL------AAKLSSA 1251 D++ RLD+V ++L+Q + E LQA EDL Q+++ ++ Sbjct: 388 ------DLNTRLDQVASTLQQLQQRLATAEESLQALTEDLASLQAEVETLQQSIVEIDRR 441 Query: 1252 RGDLSGQIDLLR---SQMGESL 1270 G L +D +R +GE L Sbjct: 442 LGQLRSTVDAVRLEVESLGEKL 463 Score = 44.3 bits (103), Expect = 3e-05 Identities = 43/190 (22%), Positives = 86/190 (45%), Gaps = 20/190 (10%) Query: 31 EKVRRYADRVKEDLDALVQERTARLRDITIEIDTYQNTLREMLSYMEERLGQIRERDREV 90 E + + RV EDL+A V RL +ID+ +L + + +E+ ++ E + Sbjct: 328 EDLESLSSRV-EDLEARVGSVEDRLSQAEEDIDSLTTSLDSLRTELEDLSTRLAEAQASL 386 Query: 91 GELEKRIQEYDRVLAELVDMTARAEENLSRIRNESEFIDRVGKRVRVVAAQLEKVEKALP 150 +L R+ + L +L A AEE+L + + + + A++E +++++ Sbjct: 387 EDLNTRLDQVASTLQQLQQRLATAEESLQALTED----------LASLQAEVETLQQSIV 436 Query: 151 GMLKRFAQLNGEQLSQVKAEVQLQARKEVEDLHREVEAARERQEDLAAAVERQGEKLRTL 210 + +R QL S V A R EVE L ++ A E+ + A++E +++ L Sbjct: 437 EIDRRLGQLR----STVDA-----VRLEVESLGEKLVQAEEKNQRQDASIEDFQSQIQEL 487 Query: 211 GVEAEALLKE 220 + + +E Sbjct: 488 RTQLDEKTRE 497 Score = 42.7 bits (99), Expect = 7e-05 Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 17/178 (9%) Query: 1445 KKLGEEVSGRLARFLSERRRIDSLEDDFKRLLGLSQAVDLKLQQITDSHDEIQAIQARLR 1504 +++ EEV+ L ER SL + LGL A+D +++ D ++ + +L Sbjct: 228 REIAEEVASAYVAPLEERL---SLVEQAVEDLGL--ALDSLEERVGDLEFAVEDLTLQLS 282 Query: 1505 AIEEAQGQVERAFERLEKRRQVLEVTTE----AVDRNFQMIQKIEEELEGYREVLNALPX 1560 +++ G +E +E R + +E + E AVD Q +Q + E+LE +L Sbjct: 283 SLDSRVGALEDRVADIEGRLEAVEGSLEDLSGAVDAMSQQLQALAEDLE-------SLSS 335 Query: 1561 XXXXXXXXXXXXXXXXGQIREAVEKLGT-LDALLDEMEERAGRLQKAREWLARTETRL 1617 Q E ++ L T LD+L E+E+ + RL +A+ L TRL Sbjct: 336 RVEDLEARVGSVEDRLSQAEEDIDSLTTSLDSLRTELEDLSTRLAEAQASLEDLNTRL 393 >gi|14601265|ref|NP_147800.1| hypothetical protein APE_1221 [Aeropyrum pernix K1] Length = 356 Score = 60.1 bits (144), Expect = 4e-10 Identities = 58/227 (25%), Positives = 109/227 (48%), Gaps = 27/227 (11%) Query: 1340 EGVLQEVEDRTREFKHFLVDTRNQFTTLQQRLFAKLEDDGARLSATLTEIERRQKAFIEQ 1399 E +L+ +E R REF++ L+ F L +R F KLE+ RL +++E RQ E+ Sbjct: 28 EKILRTLE-RDREFRYALMGLLG-FKELLER-FEKLEERQLRLEERFSQLEERQIKLEER 84 Query: 1400 TRI----FDRADHLKEVLERNLALLKEEISRVEAHLKETRSMEGQFQQVKKLGEEVSGRL 1455 ++ F R + LER L E R+E + +E +FQ++++ Sbjct: 85 FQLLEKRFQRLEERHLRLERRFQKLDERFQRLE---QRQLRLEERFQRLEQ--------- 132 Query: 1456 ARFLSERRRIDSLEDDFKRLLGLSQAVDLKLQQITDSHDEIQAIQARLRAIEEAQGQVER 1515 RF S R LE F+RL + ++ + Q++ ++ R + +EE Q ++E+ Sbjct: 133 -RFQSLEERYLRLEQRFQRLEERFRLLEERFQKLEQRQLHLEE---RFQRLEERQLKLEQ 188 Query: 1516 AFERLEKRRQVLEVTTEAVDRNF----QMIQKIEEELEGYREVLNAL 1558 F++LE+R LE + ++ F + + ++E+ L ++N + Sbjct: 189 RFQKLEERHLKLEQRFQRLEEEFRRLSERVLRVEQALVNMMRMMNTI 235 Score = 42.7 bits (99), Expect = 7e-05 Identities = 54/243 (22%), Positives = 108/243 (44%), Gaps = 25/243 (10%) Query: 21 RQLDRNNRSLEKVR--RYA-----------DRVK--EDLDALVQERTARLRDITIEIDTY 65 R++++ R+LE+ R RYA +R + E+ ++ER ++L + I+++ Sbjct: 25 REIEKILRTLERDREFRYALMGLLGFKELLERFEKLEERQLRLEERFSQLEERQIKLEER 84 Query: 66 QNTLREMLSYMEERLGQIRERDREVGELEKRIQEYDRVLAELVDMTARAEENLSR--IRN 123 L + +EER ++ R +++ E +R+++ L E + ++L +R Sbjct: 85 FQLLEKRFQRLEERHLRLERRFQKLDERFQRLEQRQLRLEERFQRLEQRFQSLEERYLRL 144 Query: 124 ESEFIDRVGKRVRVVAAQLEKVEKALPGMLKRFAQLNGEQLS-----QVKAEVQLQARKE 178 E F R+ +R R++ + +K+E+ + +RF +L QL Q E L+ + Sbjct: 145 EQRF-QRLEERFRLLEERFQKLEQRQLHLEERFQRLEERQLKLEQRFQKLEERHLKLEQR 203 Query: 179 VEDLHREVEAARERQEDLAAAVERQGEKLRTLGVEAEALLKERFGELKAALEQE--GEGV 236 + L E ER + A+ + T+ L +E F + +E G GV Sbjct: 204 FQRLEEEFRRLSERVLRVEQALVNMMRMMNTIAHRFGILTEEAFRSAMKHVVEEVLGAGV 263 Query: 237 LER 239 + R Sbjct: 264 VGR 266 >gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aeropyrum pernix K1] Length = 791 Score = 58.5 bits (140), Expect = 1e-09 Identities = 154/827 (18%), Positives = 288/827 (34%), Gaps = 111/827 (13%) Query: 30 LEKVRRYADRVKEDLDALVQERTARLRDITIEIDTYQNTLREMLSYMEERLGQI---RER 86 LE+ + ED +V+E A L D+ + L E+ + E++G + R Sbjct: 58 LERHAWLLQMLSEDEREIVEE-IASLEDVRSLSPSEAERLAELGMAINEKIGLLIAERID 116 Query: 87 DREVGELEKRIQEYDRVLAELVDMTARAEENLSRIRNESEFIDRVGKRVRVVAAQLEKVE 146 D V +++ R E++ + E L + + + +D +A L + Sbjct: 117 DEAVKQVKTR---------EVLARASLVLEKLGKDKGDPILLD--------LAKALREAA 159 Query: 147 KALPGMLKRFAQLNGEQLSQVKAEVQLQARKEVEDLHREVEAARERQEDLAAAVERQGEK 206 + PG + L V+A V+ EV + ER ++ V K Sbjct: 160 RGDPGKAV-------DILVAVEAAVESAGAIEVAAVGSTQAVGVERAIEILGEV---ASK 209 Query: 207 LRTLGVEAEALLKERFGELKAALEQEGEGVLERIRGRVEELTGQVETXXXXXXXXXXXXX 266 L TL E EA E GE++AAL+ G+L R +E + T Sbjct: 210 LETLKAEIEA---EDGGEVEAALDSALSGIL-LARSILESVAASTSTLGDHGSGVGKAV- 264 Query: 267 XGVDGLVEGLRERCRAVAAEHGXXXXXXXXXXXXXXXXXFARVVALVKKREEGLLSSLER 326 V ++E ++ A+ E G L+++ EE L + ER Sbjct: 265 --VQKIMEARLQKLEAIYQEVGAKIEAIKGEYGAELDQN-PEAQKLLEEAEEALAKARER 321 Query: 327 FXXXXXXXXXXXXXXXXXQLSRVRADVGLWEG---EARSLLEAKDAQIREWXXXXXXXXX 383 ++ V ++ +G +A++L A + + Sbjct: 322 LDRAYILLQEGA------KVGEVMREIARAQGYLSKAQALASAAEVIL----------LS 365 Query: 384 XXXXXVRTSLERKTSELLTEVETWANRVDEELQEVERMVQGKAEEVEAGVFXXXXXXXXX 443 T++E T +T + T R EE + E + + E+E G Sbjct: 366 GPTTETGTAVETATETTITTITTTTTREAEETEAAEVLAELTEVEIEIGELMEELETLQQ 425 Query: 444 XXXXXXXXXXXXXXXXXXXHQDVEAQTGSLRADAVQQLEDLKEELDQARGRVEEVFSELK 503 Q++ + G+L A L + + LD+ R +E K Sbjct: 426 KAASANQGEV----------QEILDEAGALIDRASSLLAEARSLLDEGR------IAEAK 469 Query: 504 EQVDGWTARMEDYTSSLEERISRLTAQAGEFEARQRETFGALERAFQDEAARLREELGXX 563 E++ A +E S L+ + L E+ R RE E A A+L+ Sbjct: 470 EKIAQAEAALEKADSKLDTAEAILEV-VEEYAERAREAIEEAEEALAKAEAKLQLAAQLS 528 Query: 564 XXXXXXXXXXXXXXXXXXFRELKGFAAE----EGESLRDEVRALLEKRRVEARDMVEHGF 619 K + E L +E ++ E EA+++ E Sbjct: 529 GSEAVEEALNRLEEAKEKLEAAKEAYSNGRYGEAIVLAEEAASIAE----EAKELAEKAI 584 Query: 620 AKIRAVLQQREQQVEKELERV------LDEAASWEERLSLRMEALEQGVGERVAAMEGRV 673 + + + QVE+ L+RV +++ A + E ++ + E + ++ Sbjct: 585 EAAQEAVSEVLNQVEELLDRVKDLQEEIEDIAEKAREAGVLTEEIQAAIDEVLGKLDQAR 644 Query: 674 ARLEELQDSRLGGLRTELEARLEEVREGLLADVDGFVQESRDWLERVRGELDATMGGVRE 733 + LEE G +L E R+ ++ + V++ R +E+ G+L + + E Sbjct: 645 SLLEEADSLAKEGDIDGARQKLGEARD-VIEEAVSMVRDIRSMVEQAIGDLIDELRRLIE 703 Query: 734 RMKEYEAGLRDEVAALEGRVTXXXXXXXXXXXXXXXXXXNFEEEGRGRMAQVREDLEQAL 793 ++E A L E A LE + + E + + R ++E+A+ Sbjct: 704 ELREKAAELNTEAAMLEAKARRMG-----------------DREALRLIEEARSNIEEAI 746 Query: 794 VRLEQELSGAASAVEERGREMVGTVRSEVERMVREFGREVEAFQERL 840 +L+ RE +G + E ++ E ++E ++RL Sbjct: 747 EKLQDATDKLGDGKLGEAREAIG----QAEDLLNEAEMKLEEARQRL 789 Score = 57.8 bits (138), Expect = 2e-09 Identities = 82/401 (20%), Positives = 152/401 (37%), Gaps = 58/401 (14%) Query: 1026 KEAGERDREAVFARMEEVRAELGTLQQEVEALKQEA------------------YDRISS 1067 +EA E + V A + EV E+G L +E+E L+Q+A DR SS Sbjct: 392 REAEETEAAEVLAELTEVEIEIGELMEELETLQQKAASANQGEVQEILDEAGALIDRASS 451 Query: 1068 RL----TAFEEGFFKDLEARGEELGARVAAWEEEFERKLVEVGXXXXXXXXXXXXTHTGQ 1123 L + +EG + + + + A + + + + + + Sbjct: 452 LLAEARSLLDEGRIAEAKEKIAQAEAALEKADSKLDTAEAILEVVEEYAERAREAIEEAE 511 Query: 1124 MRARLSELQTRLYSQL---ERFQDQVGQFEQSLRERLDAQEETLKG--------FQETIA 1172 +E + +L +QL E ++ + + E++ +E+L+A +E E A Sbjct: 512 EALAKAEAKLQLAAQLSGSEAVEEALNRLEEA-KEKLEAAKEAYSNGRYGEAIVLAEEAA 570 Query: 1173 ARIEELRRQAEASV--AQELAAHAQKVEEQILSHRADVDQRLDEVRERLRQHETSVEAVL 1230 + EE + AE ++ AQE + E++L D+ + ++++ E+ R+ E + Sbjct: 571 SIAEEAKELAEKAIEAAQEAVSEVLNQVEELLDRVKDLQEEIEDIAEKAREAGVLTEEIQ 630 Query: 1231 QAAREDLTRWQSDLAAKLSSARGDLS--GQIDLLRSQMGESLQIIRETFDAER------Q 1282 A E L + D A L L+ G ID R ++GE+ +I E R + Sbjct: 631 AAIDEVLGK--LDQARSLLEEADSLAKEGDIDGARQKLGEARDVIEEAVSMVRDIRSMVE 688 Query: 1283 QXXXXXXXXXXXXXXXXXXXXXGMATLSGRLD------------RVTEEAFQAFAERYGA 1330 Q + T + L+ R+ EEA E Sbjct: 689 QAIGDLIDELRRLIEELREKAAELNTEAAMLEAKARRMGDREALRLIEEARSNIEEAIEK 748 Query: 1331 LQDRFEQYREGVLQEVEDRTREFKHFLVDTRNQFTTLQQRL 1371 LQD ++ +G L E + + + L + + +QRL Sbjct: 749 LQDATDKLGDGKLGEAREAIGQAEDLLNEAEMKLEEARQRL 789 Score = 47.8 bits (112), Expect = 2e-06 Identities = 64/279 (22%), Positives = 116/279 (41%), Gaps = 28/279 (10%) Query: 23 LDRNNRSLEKVRRYAD--RVKEDLDALVQERTARLRDITIEIDTYQNTLREMLSYMEERL 80 +DR + L + R D R+ E + + Q A L ++DT + L + Y E Sbjct: 446 IDRASSLLAEARSLLDEGRIAEAKEKIAQAEAA-LEKADSKLDTAEAILEVVEEYAERAR 504 Query: 81 GQIRERDREVGELEKRIQEYDRVLAELVDMTARAEENLSRIRNESEFIDRVGKRVRVVAA 140 I E + + + E ++Q LA + + EE L+R+ E ++ + A Sbjct: 505 EAIEEAEEALAKAEAKLQ-----LAAQLSGSEAVEEALNRLEEAKEKLEAAKE-----AY 554 Query: 141 QLEKVEKALPGMLKRFAQLNGEQLSQVKAEVQLQARKEVEDLHREVEAARERQEDLAAAV 200 + +A+ +L A E+ ++ + A++ V ++ +VE +R +DL + Sbjct: 555 SNGRYGEAI--VLAEEAASIAEEAKELAEKAIEAAQEAVSEVLNQVEELLDRVKDLQEEI 612 Query: 201 ERQGEKLRTLGV---EAEALLKERFGEL---KAALEQEG----EGVLERIRGRVEELTGQ 250 E EK R GV E +A + E G+L ++ LE+ EG ++ R ++ E Sbjct: 613 EDIAEKAREAGVLTEEIQAAIDEVLGKLDQARSLLEEADSLAKEGDIDGARQKLGEARDV 672 Query: 251 VETXXXXXXXXXXXXXXGVDGLVEGLR---ERCRAVAAE 286 +E + L++ LR E R AAE Sbjct: 673 IEEAVSMVRDIRSMVEQAIGDLIDELRRLIEELREKAAE 711 Score = 46.6 bits (109), Expect = 5e-06 Identities = 129/655 (19%), Positives = 240/655 (36%), Gaps = 81/655 (12%) Query: 618 GFAKIRAVLQQREQQVEKELERVLDEAASWEERLSLRMEALEQGVGERV--AAMEGRVAR 675 G ++ AV + VE+ +E +L E AS E L +EA + G E +A+ G + Sbjct: 181 GAIEVAAVGSTQAVGVERAIE-ILGEVASKLETLKAEIEAEDGGEVEAALDSALSGILLA 239 Query: 676 LEELQD-----SRLGGLRTEL-EARLEEVREGLLADVDGFVQESRDWLERVRGELDATMG 729 L+ S LG + + +A ++++ E L ++ QE +E ++GE A + Sbjct: 240 RSILESVAASTSTLGDHGSGVGKAVVQKIMEARLQKLEAIYQEVGAKIEAIKGEYGAELD 299 Query: 730 GVRERMKEYEAGLRDEVAALEGRVTXXXXXXXXXXXXXXXXXXNFEEEGRGRMAQVREDL 789 E K E + +A R+ +G AQ Sbjct: 300 QNPEAQKLLEEA-EEALAKARERLDRAYILLQEGAKVGEVMREIARAQGYLSKAQALASA 358 Query: 790 EQALVRLEQELSGAASAVEERGREMVGTVRSEVERMVREF-GREVEAFQERLQGQLGQLD 848 + ++ L + +AVE + T+ + R E EV A ++ ++G+L Sbjct: 359 AEVIL-LSGPTTETGTAVETATETTITTITTTTTREAEETEAAEVLAELTEVEIEIGELM 417 Query: 849 ERIARWEAEVQERLLGAEERVEGQLGDFEGRVVAFVRTHEERLGEVEARL-EGRVRQVEE 907 E + +Q++ A + G++ + A + L E + L EGR+ + +E Sbjct: 418 EELET----LQQKAASANQ---GEVQEILDEAGALIDRASSLLAEARSLLDEGRIAEAKE 470 Query: 908 Q----EAALGMRVGEVADEVXXXXXXXXXXXXXXXXXXXXXMQGRQDEMWKAVEQRGVXX 963 + EAAL E AD ++ ++ + KA + + Sbjct: 471 KIAQAEAAL-----EKADSKLDTAEAILEVVEEYAERAREAIEEAEEALAKAEAKLQLAA 525 Query: 964 XXXXXXXXXXXXXXYAGDLEYRMRRVEGVSAQIQDLEDALSR-------MLEATRERIRQ 1016 +E + R+E +++ ++A S +L I + Sbjct: 526 QLSGSEA-----------VEEALNRLEEAKEKLEAAKEAYSNGRYGEAIVLAEEAASIAE 574 Query: 1017 EQERFYQGLKEAGERDREAVFARMEEVRAELGTLQQEVEALKQEAYDRISSRLTAFEEGF 1076 E + + EA + V ++EE+ + LQ+E+E + ++A R + LT Sbjct: 575 EAKELAEKAIEAAQEAVSEVLNQVEELLDRVKDLQEEIEDIAEKA--REAGVLT------ 626 Query: 1077 FKDLEARGEELGARVAAWEEEFERKLVEVGXXXXXXXXXXXXTHTGQMRARLSELQTRLY 1136 EE+ A + +E KL + R +L E + + Sbjct: 627 --------EEIQAAI----DEVLGKLDQARSLLEEADSLAKEGDIDGARQKLGEARDVIE 674 Query: 1137 SQLERFQDQVGQFEQSLRERLDAQEETLKGFQE------TIAARIEELRRQAEASVAQEL 1190 + +D EQ++ + +D ++ +E T AA +E R+ A L Sbjct: 675 EAVSMVRDIRSMVEQAIGDLIDELRRLIEELREKAAELNTEAAMLEAKARRMGDREALRL 734 Query: 1191 AAHAQKVEEQILSHRADV-----DQRLDEVRERLRQHE---TSVEAVLQAAREDL 1237 A+ E+ + D D +L E RE + Q E E L+ AR+ L Sbjct: 735 IEEARSNIEEAIEKLQDATDKLGDGKLGEAREAIGQAEDLLNEAEMKLEEARQRL 789 >gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1] Length = 919 Score = 53.5 bits (127), Expect = 4e-08 Identities = 143/715 (20%), Positives = 283/715 (39%), Gaps = 168/715 (23%) Query: 789 LEQALVRLEQELSGAASAVEERGREMVGTVRSEVERMVREFGREVEAFQERLQGQLGQLD 848 L ++ +++E+ A+ +EE RE R E+ER R+ E +A LQ ++G+L+ Sbjct: 210 LRNEVLGVDREIREASKRLEELERE-----REELERRARDLESEAKA----LQSEIGKLE 260 Query: 849 ERIARWEAEVQERLLGAEERVEGQLGDFEGRVVAFVRTHEERLGEVEARL---EGRVRQV 905 ++E L+ V + +R+ +L + RL E ++ + Sbjct: 261 T--------MEEMLVN---------------VTSMIRSERSKLDTINTRLRYAESKISSI 297 Query: 906 EEQE---------AALGMRVGEVADEVXXXXXXXXXXXXXXXXXXXXXMQGRQDEMWKAV 956 ++ E A+L V E+A +Q R D++ + + Sbjct: 298 DDLEKRRAELRAKASLAHEVAELA-----------------------RLQSRLDKLGRDL 334 Query: 957 EQRGVXXXXXXXXXXXXXXXXYAGDLEYRMRRVEGVSAQIQDLE----DALSRMLEATRE 1012 E + + ++E VS +++++E +A +R+LEA R Sbjct: 335 EM-----------------------IRDAVEKLE-VSRRLKEIESARREAENRLLEA-RS 369 Query: 1013 RIRQEQERFYQGLKEAGERDREAVFARMEEVRAELGTLQQEVEALKQEAYDRISSRLTAF 1072 I++EQ R Y L R R V +R L + + + E + + RL A Sbjct: 370 SIKEEQRR-YTLLDYRVTRGRSIV----TNIRRVLSECRSK-DLCGSEKPESVLERLDAV 423 Query: 1073 EEGFFKDLEARGEELGARVAAWEEEFERKLVEVGXXXXXXXXXXXXTHTGQMRARLSELQ 1132 DLE++ L +A E E R + + ++ +E Sbjct: 424 ----INDLESKARALDQEASALEAEARRLVQALSMLEESGGSARCPVCGAELPPGRAEAI 479 Query: 1133 TRLYSQLERFQDQVGQFEQSLRERLDAQEETLKGFQETIAARIEELRRQAEASVAQ--EL 1190 R Y + + + ++ +E+ E+ A+R+++ RR+ E +++ +L Sbjct: 480 ARHY------RHEAERLRKAAKEKAAEAEKA-----RAEASRLQDKRRRIELLLSRLNQL 528 Query: 1191 AAHAQKVEEQILSHRADVDQRLDEVRERLRQHETSVEAVLQAAREDLTRWQSDLAAKLSS 1250 +++ Q A +Q+L +RERL E+L + ++ L K+ + Sbjct: 529 EEGLRELGFQTPEDLAKAEQKLRMLRERL---------------EELRKLENSLEEKVRN 573 Query: 1251 ARGDLSGQIDLLRSQMGESLQIIRETFDAERQQXXXXXXXXXXXXXXXXXXXXXGMATLS 1310 LS + LR +L++++ E + +++ S Sbjct: 574 ----LSREEVALREAKTRALEVLQRLGIKEEEAREKLKT----------------LSSES 613 Query: 1311 GRLDRVTEEAFQAFAERYG-----ALQDRFEQYREGVLQEVEDRTREFKHFLVDTRNQFT 1365 +L+R+ + A R G +L D E+ RE L+ V+ + L + R Sbjct: 614 KKLERMLVSKAEDLATRLGITAYRSLDDLLEKAREA-LEGVDKELSAIERRLEEARR--- 669 Query: 1366 TLQQRLFAKLEDDGARLSATLTEIERRQKAFIEQ-TRIFDRADHLKEVLERNLALLKEEI 1424 L++ AKL+ + ++ L E+E +K ++ +R + LKEV + LA L + I Sbjct: 670 -LKEEA-AKLKWEAEQVMKRLEELEAEEKKLRKEVSRKSEIEARLKEV-QNTLAELDDRI 726 Query: 1425 SRVEAHLKETRSMEGQFQQVKKLGEEVSGRLARFLSERRRIDSL-EDDFKRLLGL 1478 SR++ + E ++ + + K GEE + RR ++ + E ++RLL + Sbjct: 727 SRIDREMGELQTRIREMKSRKASGEEALKLYLPAAASRRIMEEIGEIAYRRLLAV 781 Score = 47.8 bits (112), Expect = 2e-06 Identities = 51/224 (22%), Positives = 104/224 (46%), Gaps = 26/224 (11%) Query: 22 QLDRNNRSLEKVRRYADRVKEDLDALVQERTARLRDITIEIDTYQNTLREM-------LS 74 + +R ++ ++ A++ + + L Q++ R+ + ++ + LRE+ L+ Sbjct: 486 EAERLRKAAKEKAAEAEKARAEASRL-QDKRRRIELLLSRLNQLEEGLRELGFQTPEDLA 544 Query: 75 YMEERLGQIRERDREVGELEKRIQEYDRVLAE----LVDMTARAEENLSRIRNESEFIDR 130 E++L +RER E+ +LE ++E R L+ L + RA E L R+ + E Sbjct: 545 KAEQKLRMLRERLEELRKLENSLEEKVRNLSREEVALREAKTRALEVLQRLGIKEE---E 601 Query: 131 VGKRVRVVAAQLEKVEKALPGMLKRFAQLNGEQLSQVKAEVQLQARKEVEDLHREVEAAR 190 ++++ ++++ +K+E+ L + A G + A + ++DL + A Sbjct: 602 AREKLKTLSSESKKLERMLVSKAEDLATRLG-----------ITAYRSLDDLLEKAREAL 650 Query: 191 ERQEDLAAAVERQGEKLRTLGVEAEALLKERFGELKAALEQEGE 234 E + +A+ER+ E+ R L EA L E +K E E E Sbjct: 651 EGVDKELSAIERRLEEARRLKEEAAKLKWEAEQVMKRLEELEAE 694 Score = 47.8 bits (112), Expect = 2e-06 Identities = 80/366 (21%), Positives = 140/366 (38%), Gaps = 50/366 (13%) Query: 504 EQVDGWTARMEDYTSSLEERISRLTAQAGEFEARQRETFGALERAFQDEAARLREELGXX 563 E+ + R++ + LE + L +A EA R AL + + G Sbjct: 411 EKPESVLERLDAVINDLESKARALDQEASALEAEARRLVQALSMLEESGGSARCPVCGAE 470 Query: 564 XX-XXXXXXXXXXXXXXXXFRELKGFAAEEGESLRDEVRALLEKRR-----VEARDMVEH 617 R+ A E E R E L +KRR + + +E Sbjct: 471 LPPGRAEAIARHYRHEAERLRKAAKEKAAEAEKARAEASRLQDKRRRIELLLSRLNQLEE 530 Query: 618 GFAKIRAVLQQREQQVEKELERV---LDEAASWEERLSLRMEALEQGVGERVAAMEGRVA 674 G ++ + + E++L + L+E E L ++ L + E VA E + Sbjct: 531 GLRELGFQTPEDLAKAEQKLRMLRERLEELRKLENSLEEKVRNLSR---EEVALREAKTR 587 Query: 675 RLEELQDSRLGGLRTELEARLEEVREGLLADVDGFVQESRDWLERVRGELDATMGGVRER 734 LE LQ RLG E +L+ + V ++ D R+ ++ + E+ Sbjct: 588 ALEVLQ--RLGIKEEEAREKLKTLSSESKKLERMLVSKAEDLATRLGITAYRSLDDLLEK 645 Query: 735 MKEYEAGLRDEVAALEGRVTXXXXXXXXXXXXXXXXXXNFEEEGRGRMAQVREDLEQALV 794 +E G+ E++A+E R+ +EE A+++ + EQ + Sbjct: 646 AREALEGVDKELSAIERRLEEAR---------------RLKEEA----AKLKWEAEQVMK 686 Query: 795 RLEQELSGAASAVEERGREMVGTVRSEVERMVREFGREVEAFQERLQGQLGQLDERIARW 854 RLE+ A E++ +R EV R E+EA + +Q L +LD+RI+R Sbjct: 687 RLEE-----LEAEEKK-------LRKEVSRK-----SEIEARLKEVQNTLAELDDRISRI 729 Query: 855 EAEVQE 860 + E+ E Sbjct: 730 DREMGE 735 >gi|14600971|ref|NP_147497.1| hypothetical protein APE_0790 [Aeropyrum pernix K1] Length = 297 Score = 46.6 bits (109), Expect = 5e-06 Identities = 57/256 (22%), Positives = 116/256 (45%), Gaps = 45/256 (17%) Query: 21 RQLDRNNRSLEKVRRYADRVKEDLDALVQERTARLRDITIEIDTYQNTLREMLSYMEERL 80 R + + E++ + + +KE++ L +ER + + E+ + EER Sbjct: 4 RSIAEFKKEEEELLKTIEELKEEIVRLKEER--------------RKLINEVKALREERR 49 Query: 81 GQIRERDREVGELEKRIQEYDRVLAELVDMTARAEENLSRIRNESEFIDRVGKRVRVVAA 140 RE+ V +L +E ++L EL A+ +E + R+E I R ++RV+ Sbjct: 50 KASREKREYVEKLRSLREERKKILDEL----AQLKEERKKTRDEL-VIKR--DQLRVLRG 102 Query: 141 QLEK-----VEKALPGMLKRFAQLNGEQLSQV-KAEVQLQARKEVEDLHREVEAARERQE 194 LEK + +L + +R +L Q+++V + E + + +E+ L +E R+ +E Sbjct: 103 LLEKEGGRLAKISLKRLQRRLQELEMMQMTRVLRPEEEKRLVEEISRLEELIERVRKAKE 162 Query: 195 DLAAAVERQGE------KLRTLGVEAEAL------LKERFGELKAALEQEGEGV------ 236 + +E Q E KL+ L + L +KE L + +E+ E + Sbjct: 163 QALSTMELQAEVKALVIKLKDLNQRIDELRQQAGSVKEELATLSSKIEEYNERIKKLSEE 222 Query: 237 LERIRGRVEELTGQVE 252 +E+ R++EL+ +++ Sbjct: 223 IEKRSTRIDELSKEID 238 Score = 45.4 bits (106), Expect = 1e-05 Identities = 49/230 (21%), Positives = 103/230 (44%), Gaps = 33/230 (14%) Query: 1324 FAERYGALQDRFEQYREGVLQEVEDRTREFKHFLVDTRNQFTTLQQRLFAKLEDDGARLS 1383 + E+ +L++ ++ + + Q E+R ++ + LV R+Q L+ LE +G RL+ Sbjct: 58 YVEKLRSLREERKKILDELAQLKEER-KKTRDELVIKRDQLRVLR----GLLEKEGGRLA 112 Query: 1384 A-TLTEIERRQKAFIEQTRIFDRADHLKEVLERNLALLKEEISRVEAHLKETRSMEGQFQ 1442 +L ++RR +++ + L+ E+ L EEISR+E ++ R + Q Sbjct: 113 KISLKRLQRR----LQELEMMQMTRVLRPEEEKRLV---EEISRLEELIERVRKAKEQAL 165 Query: 1443 QVKKLGEEVSGRLARFLSERRRIDSLEDDFKRLLGLSQAVDLKLQQITDSHDEIQAIQAR 1502 +L EV + + +RID L QQ +E+ + ++ Sbjct: 166 STMELQAEVKALVIKLKDLNQRIDELR-----------------QQAGSVKEELATLSSK 208 Query: 1503 LRAIEEAQGQVERAFERLEKRRQVLEVTTEAVDRNFQMIQKIEEELEGYR 1552 IEE ++++ E +EKR ++ ++ +D + +++ L+ R Sbjct: 209 ---IEEYNERIKKLSEEIEKRSTRIDELSKEIDNLYAKYREVMTRLKDIR 255 Score = 45.1 bits (105), Expect = 1e-05 Identities = 63/275 (22%), Positives = 130/275 (47%), Gaps = 58/275 (21%) Query: 591 EEGESLRDEVRALLEKRRVEARDMVEHGFAKIRAVLQQREQ------QVEKELERVLDEA 644 EE L +EV+AL E+RR +R+ E+ K+R++ ++R++ Q+++E ++ DE Sbjct: 32 EERRKLINEVKALREERRKASREKREY-VEKLRSLREERKKILDELAQLKEERKKTRDEL 90 Query: 645 ASWEERLSLRMEALEQGVGE----RVAAMEGRVARLEELQDSRLGGLRTELEARL-EEVR 699 ++L + LE+ G + ++ R+ LE +Q +R+ LR E E RL EE+ Sbjct: 91 VIKRDQLRVLRGLLEKEGGRLAKISLKRLQRRLQELEMMQMTRV--LRPEEEKRLVEEIS 148 Query: 700 --EGLLADVDGFVQESRDWLERVRGELDATMGGVR------ERMKEYEAGLRDEVAALEG 751 E L+ V +++ +E ++ E+ A + ++ + +++ +++E+A L Sbjct: 149 RLEELIERVRKAKEQALSTME-LQAEVKALVIKLKDLNQRIDELRQQAGSVKEELATLSS 207 Query: 752 RVTXXXXXXXXXXXXXXXXXXNFEEEGRGRMAQVREDLEQALVRLEQELSGAASAVEERG 811 ++ EE R+ ++ E++E+ R++ ELS + + Sbjct: 208 KI----------------------EEYNERIKKLSEEIEKRSTRID-ELSKEIDNLYAKY 244 Query: 812 REMV------------GTVRSEVERMVREFGREVE 834 RE++ G SEVE+ E +++E Sbjct: 245 REVMTRLKDIRIAMARGMELSEVEKRREEIKKKME 279 Score = 44.7 bits (104), Expect = 2e-05 Identities = 62/299 (20%), Positives = 132/299 (44%), Gaps = 47/299 (15%) Query: 994 AQIQDLEDALSRMLEATRE---RIRQEQERFYQGLKEAGERDREAVFARMEEVRAELGTL 1050 A+ + E+ L + +E +E R+++E+ + +K E R+A + E V +L +L Sbjct: 7 AEFKKEEEELLKTIEELKEEIVRLKEERRKLINEVKALREERRKASREKREYVE-KLRSL 65 Query: 1051 QQEVEALKQEAYDRISSRLTAFEEGFFKDLEARG-----EELGARVAAWE-EEFERKLVE 1104 ++E + + E R +E K + R E+ G R+A + +R+L E Sbjct: 66 REERKKILDELAQLKEERKKTRDELVIKRDQLRVLRGLLEKEGGRLAKISLKRLQRRLQE 125 Query: 1105 VGXXXXXXXXXXXXTHTGQMRARLSELQTRLYSQLERFQDQVGQFEQSLRERLDAQE--- 1161 + R E + RL ++ R ++ + + ++ + L E Sbjct: 126 LEMMQMT-------------RVLRPEEEKRLVEEISRLEELIERVRKAKEQALSTMELQA 172 Query: 1162 --ETLKGFQETIAARIEELRRQAEASVAQELAAHAQKVEEQILSHRADVDQRLDEVRERL 1219 + L + + RI+ELR+QA SV +ELA + K+EE ++R+ ++ E + Sbjct: 173 EVKALVIKLKDLNQRIDELRQQA-GSVKEELATLSSKIEE--------YNERIKKLSEEI 223 Query: 1220 RQHETSVEAVLQAA-------REDLTRWQSDLAAKLSSARGDLSGQIDLLRSQMGESLQ 1271 + T ++ + + RE +TR + +++ ARG +++ R ++ + ++ Sbjct: 224 EKRSTRIDELSKEIDNLYAKYREVMTRLKD---IRIAMARGMELSEVEKRREEIKKKME 279 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.132 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,357,865 Number of Sequences: 1700 Number of extensions: 56747 Number of successful extensions: 558 Number of sequences better than 1.0e-04: 5 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 410 Number of HSP's gapped (non-prelim): 76 length of query: 1689 length of database: 492,079 effective HSP length: 90 effective length of query: 1599 effective length of database: 339,079 effective search space: 542187321 effective search space used: 542187321 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 98 (42.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719548|ref|YP_003875080.1| HAD superfamily hydrolase [Spirochaeta thermophila DSM 6192] (220 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 251,851 Number of Sequences: 1700 Number of extensions: 12034 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 0 length of query: 220 length of database: 492,079 effective HSP length: 73 effective length of query: 147 effective length of database: 367,979 effective search space: 54092913 effective search space used: 54092913 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719549|ref|YP_003875081.1| hypothetical protein STHERM_c18730 [Spirochaeta thermophila DSM 6192] (243 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 288,414 Number of Sequences: 1700 Number of extensions: 14478 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 0 length of query: 243 length of database: 492,079 effective HSP length: 74 effective length of query: 169 effective length of database: 366,279 effective search space: 61901151 effective search space used: 61901151 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719550|ref|YP_003875082.1| hypothetical protein STHERM_c18740 [Spirochaeta thermophila DSM 6192] (292 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 326,115 Number of Sequences: 1700 Number of extensions: 15465 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 0 length of query: 292 length of database: 492,079 effective HSP length: 76 effective length of query: 216 effective length of database: 362,879 effective search space: 78381864 effective search space used: 78381864 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719551|ref|YP_003875083.1| hypothetical protein STHERM_c18750 [Spirochaeta thermophila DSM 6192] (1056 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,059,533 Number of Sequences: 1700 Number of extensions: 48783 Number of successful extensions: 115 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115 Number of HSP's gapped (non-prelim): 0 length of query: 1056 length of database: 492,079 effective HSP length: 86 effective length of query: 970 effective length of database: 345,879 effective search space: 335502630 effective search space used: 335502630 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719552|ref|YP_003875084.1| tryptophan synthase beta chain 2 [Spirochaeta thermophila DSM 6192] (450 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601988|ref|NP_148533.1| tryptophan synthase subunit beta [A... 494 e-141 gi|14602139|ref|NP_148687.1| tryptophan synthase subunit beta [A... 313 5e-87 >gi|14601988|ref|NP_148533.1| tryptophan synthase subunit beta [Aeropyrum pernix K1] Length = 449 Score = 494 bits (1273), Expect = e-141 Identities = 249/436 (57%), Positives = 318/436 (72%), Gaps = 6/436 (1%) Query: 7 LSEKDLPSHWYNIXXXXXXXXXXXXXHPVTKQPLAPDELSALFPRALIEQEMSGERWIEI 66 LS +++P+ WYNI +P T +P+ P L+ LFP+ALIEQE+S ER+IEI Sbjct: 10 LSIEEVPTSWYNILPDLPEEVPPPL-NPKTGEPVDPSALAKLFPKALIEQEVSRERYIEI 68 Query: 67 PEEVRKILALW--RPTPLYRAYQLEQALGTPARIYFKWEGASPPGSHKSNTSVAQAYYNR 124 P EV + + RPTPL RA LE+AL TPA IY+K+EG +P GSHK NT++AQAYYN+ Sbjct: 69 PGEVHEAYISFARRPTPLLRAVNLERALNTPAEIYYKYEGVTPTGSHKINTALAQAYYNK 128 Query: 125 KEGITRLTTETGAGQWGSSLAFAGRLFGMEVRVYMVKVSYEGKPYRRIMMETWGAECIPS 184 EG+ RL TETGAGQWGS+L+ AG FG++VRVYMV+VSY KPYRR +ME +GAE PS Sbjct: 129 LEGVERLVTETGAGQWGSALSAAGAYFGVKVRVYMVRVSYLQKPYRRTLMELYGAEVYPS 188 Query: 185 PSPRTKVGKAILEKDPDSPGSLGIAISXXXXXXXXXX-DTHYALGSVLNHVLLHQTVIGL 243 PS +T+ G+ +L ++P+ PGSLGIAIS + Y+LGSVLNHVLLHQTVIGL Sbjct: 189 PSDKTEFGRKLLAENPNHPGSLGIAISEAIEDVINSGGNAKYSLGSVLNHVLLHQTVIGL 248 Query: 244 ECKKQLELAGDYPDVVIGCVGGGSNFGGIALPFAYDKIHGKD-VRLVAVEPSACPTLTKG 302 E +KQ AG YPD++IG VGGGSNF G PF ++ G R +AVEP A P++T+G Sbjct: 249 EAEKQFREAGVYPDIMIGAVGGGSNFAGFTYPFIRHRLKGSSSTRFIAVEPKASPSMTRG 308 Query: 303 VYTYDYGDTGKMTPIVRMHTLGHDFVPPGIHAGGLRYHGMAPIVSRLVKEGVVEARAYHQ 362 VYTYDYGDT +TP+++MHTLGH + P IHAGGLRYHG+AP +S L+K G+VEARAYHQ Sbjct: 309 VYTYDYGDTAGLTPLLKMHTLGHTYQVPPIHAGGLRYHGVAPTLSVLLKHGIVEARAYHQ 368 Query: 363 RAVFEAAVLFARTEGFIVAPETAHAIKACVDEALAAKEEGKERVILVNASGHGHFDMAAY 422 R VF AA +FA+ EG + APE+AHA+KA +DEA+ A++EG+ VI N SGHG D+ Y Sbjct: 369 REVFRAAHMFAKAEGIVPAPESAHAVKAAIDEAIKARDEGRRVVIAFNLSGHGLLDLQGY 428 Query: 423 QQYFEGRLEDYEYPEE 438 ++Y +G LEDYE PEE Sbjct: 429 REYLDGTLEDYE-PEE 443 >gi|14602139|ref|NP_148687.1| tryptophan synthase subunit beta [Aeropyrum pernix K1] Length = 427 Score = 313 bits (802), Expect = 5e-87 Identities = 182/425 (42%), Positives = 242/425 (56%), Gaps = 13/425 (3%) Query: 12 LPSHWYNIXXXXXXXXXXXXXHPVTKQPLAPDELSALFPRALIEQEMSGERWIEIPEEVR 71 +P WYNI ++ LS + P LIE E RW++IP EVR Sbjct: 4 VPLRWYNIAADLPEPLPPLRDPEGLREESRIALLSRILPSRLIEDEYILARWVDIPGEVR 63 Query: 72 KILA-LWRPTPLYRAYQLEQALGTPAR--IYFKWEGASPPGSHKSNTSVAQAYYNRKEGI 128 K LA + RPTPL RA LE+ LG R IY+K E P GSHK NT++AQAYY + +G Sbjct: 64 KALARIGRPTPLIRAEGLEKVLGVKGRVRIYYKSEAVLPTGSHKINTAIAQAYYAKLDGA 123 Query: 129 TRLTTETGAGQWGSSLAFAGRLFGMEVRVYMVKVSYEGKPYRRIMMETWGAECIPSPSPR 188 + TETGAGQWG + + A L G++ V+M S++ K RR++ME GA I SPS Sbjct: 124 KEIVTETGAGQWGLAASTAAALMGLKATVFMTASSFKSKIQRRLLMEAQGARVISSPSKL 183 Query: 189 TKVGKAILEKDPDS-PGSLGIAISXXXXXXXXXXDTHYALGSVLNHVLLHQTVIGLECKK 247 T G+ LE+ + PGSLG+AI+ D Y GSVL VL+HQTVIGLE Sbjct: 184 TDTGREALEEYGSTHPGSLGLAIAEAVEYTLESGDRRYLPGSVLEAVLMHQTVIGLEALD 243 Query: 248 QLELAGDYPDVVIGCVGGGSNFGGIALPFAYDKIHGKD---VRLVAVEPSACPTLTKGVY 304 QL + PDVV+ CVGGGSNFGG P ++ G+ R +A E +A P LT+G Y Sbjct: 244 QLP---EEPDVVVACVGGGSNFGGFTYPMIGARLRGEGFEKTRFIAAESTAAPKLTRGEY 300 Query: 305 TYDYGDTGKMTPIVRMHTLGHDFVPPGIHAGGLRYHGMAPIVSRLVKEGVVEARAYHQRA 364 YD D+ + P+ +M+TLGH + PP HA GLRYHG++P +S L + G+VEA A Q Sbjct: 301 RYDGLDSSLILPLAKMYTLGHRYTPPPSHAAGLRYHGVSPSLSILRRLGLVEAEAIPQEE 360 Query: 365 VFEAAVLFARTEGFIVAPETAHAIKACVDEALAAKEEGKERVILVNASGHGHFDMAAYQQ 424 + +L AR+EG + APE++HA+ A A++ V+ N SGHG D+ A Q+ Sbjct: 361 ALASILLMARSEGVVPAPESSHAVALA---ARIARKLPDGSVVAFNLSGHGLLDLDALQK 417 Query: 425 YFEGR 429 E R Sbjct: 418 ALEIR 422 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 481,765 Number of Sequences: 1700 Number of extensions: 22598 Number of successful extensions: 85 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74 Number of HSP's gapped (non-prelim): 2 length of query: 450 length of database: 492,079 effective HSP length: 80 effective length of query: 370 effective length of database: 356,079 effective search space: 131749230 effective search space used: 131749230 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719553|ref|YP_003875085.1| hypothetical protein STHERM_c18770 [Spirochaeta thermophila DSM 6192] (104 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.133 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,932 Number of Sequences: 1700 Number of extensions: 3754 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 104 length of database: 492,079 effective HSP length: 64 effective length of query: 40 effective length of database: 383,279 effective search space: 15331160 effective search space used: 15331160 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719554|ref|YP_003875086.1| serine protease [Spirochaeta thermophila DSM 6192] (284 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431782|ref|NP_148461.2| hypothetical protein APE_2212.1 [A... 259 5e-71 >gi|118431782|ref|NP_148461.2| hypothetical protein APE_2212.1 [Aeropyrum pernix K1] Length = 292 Score = 259 bits (662), Expect = 5e-71 Identities = 135/231 (58%), Positives = 168/231 (72%), Gaps = 7/231 (3%) Query: 43 RVITLIHRQETMGFLGFPLVRYIDIDDSEAVLRAIKMTDDDVPIDLILHTPGGLVVAAEQ 102 RVIT+IHR+E + F G PL R+IDIDDSEAV+RAI+ T + PI LILHTPGGLV+AA Q Sbjct: 49 RVITMIHREERVSFFGIPLRRFIDIDDSEAVIRAIRSTPPEKPIALILHTPGGLVLAASQ 108 Query: 103 IAYALKKHPAKVTVFVPHYAMSGGTLIALAADEVVMDENAVLGPVDPQIG------QQPA 156 IA ALK+H + V VPHYAMSGGTLIALAADE+ MD NAVLGP+DPQ+ PA Sbjct: 109 IARALKRHRGRKIVIVPHYAMSGGTLIALAADEIRMDPNAVLGPLDPQLSAGPTGPAVPA 168 Query: 157 ASILKVLERKPIAEVDDETIILADVAEKAICQVKRVVKTLLEGRLPGDKAEEIATRLATG 216 S++KV K + D T+ILADVAEKAI +++ V+ LL+ ++ +KA E A L G Sbjct: 169 PSVVKVARMKG-KDAQDTTLILADVAEKAIEEMREVITELLKDKMGVEKARETAVLLTEG 227 Query: 217 EFTHDYPITVDEARELGLTVSTEMPAEVYEIMALYPQTAQRRPSVEYIPSP 267 +THDYPIT ++ARE+GL VS E+P EVY++M LYPQ RP VEY+P P Sbjct: 228 RWTHDYPITFEKAREIGLPVSDEVPPEVYQLMELYPQAPANRPGVEYLPQP 278 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 257,133 Number of Sequences: 1700 Number of extensions: 10955 Number of successful extensions: 57 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 1 length of query: 284 length of database: 492,079 effective HSP length: 76 effective length of query: 208 effective length of database: 362,879 effective search space: 75478832 effective search space used: 75478832 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719555|ref|YP_003875087.1| rhomboid family protein [Spirochaeta thermophila DSM 6192] (231 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431630|ref|NP_148231.2| subfamily S26B peptidase [Aeropyru... 131 2e-32 >gi|118431630|ref|NP_148231.2| subfamily S26B peptidase [Aeropyrum pernix K1] Length = 253 Score = 131 bits (329), Expect = 2e-32 Identities = 82/207 (39%), Positives = 107/207 (51%), Gaps = 27/207 (13%) Query: 2 LPIKDT-VRSWSFPWVNWGLIVTNVLVFL------WMAGLGPEA-EFVVGRWGLVPARVV 53 +P+ D VR P VN +I N F+ W+ G + V+ G++PA VV Sbjct: 3 IPLGDEDVRELGAPIVNMSIIALNFAAFIVGLTAPWVIVPGSRSYSDVIAALGMIPAYVV 62 Query: 54 GSGHPGVFVQFITAMFLHGGWAHLFSNMLALYIFGDNVEDRLGSVRYLAFYLLSGIAASV 113 T+MFLHG WAH+ NML LYIFGDN+E LG RY+ Y+ SG+ A V Sbjct: 63 AGER---LYTVFTSMFLHGSWAHILGNMLYLYIFGDNIESILGRARYIILYIGSGLGAVV 119 Query: 114 THIALFPDSP----------------VPMVGASGAISGVLAAYVLMFPRARVITLIPLFF 157 HIA P +P VGASGAISGVL AY L+ P +RV L + Sbjct: 120 FHIASIAFMPSEALINAALSSANPWMIPAVGASGAISGVLGAYALLIPFSRVRMLTFWGW 179 Query: 158 LPMFVEIPALFYIGGWFLSQLLNGFAT 184 P+ + +PA +IG WF+ QL+ G AT Sbjct: 180 FPLVLSVPASIFIGFWFVYQLVMGLAT 206 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.146 0.491 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 211,993 Number of Sequences: 1700 Number of extensions: 9602 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 1 length of query: 231 length of database: 492,079 effective HSP length: 74 effective length of query: 157 effective length of database: 366,279 effective search space: 57505803 effective search space used: 57505803 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719556|ref|YP_003875088.1| zinc finger, CDGSH-type [Spirochaeta thermophila DSM 6192] (76 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601485|ref|NP_148024.1| hypothetical protein APE_1559a [Aer... 38 4e-05 >gi|14601485|ref|NP_148024.1| hypothetical protein APE_1559a [Aeropyrum pernix K1] Length = 59 Score = 38.1 bits (87), Expect = 4e-05 Identities = 13/17 (76%), Positives = 15/17 (88%) Query: 56 LCTCGQSSNKPFCDGTH 72 LC CG S+NKP+CDGTH Sbjct: 26 LCRCGHSNNKPYCDGTH 42 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.480 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,408 Number of Sequences: 1700 Number of extensions: 1668 Number of successful extensions: 5 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 2 length of query: 76 length of database: 492,079 effective HSP length: 46 effective length of query: 30 effective length of database: 413,879 effective search space: 12416370 effective search space used: 12416370 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719557|ref|YP_003875089.1| bacitracin ABC transporter permease [Spirochaeta thermophila DSM 6192] (261 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.141 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 219,834 Number of Sequences: 1700 Number of extensions: 7601 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 261 length of database: 492,079 effective HSP length: 75 effective length of query: 186 effective length of database: 364,579 effective search space: 67811694 effective search space used: 67811694 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719558|ref|YP_003875090.1| bacitracin ABC transporter ATP-binding protein [Spirochaeta thermophila DSM 6192] (303 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 140 5e-35 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 135 1e-33 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 132 1e-32 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 128 2e-31 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 122 1e-29 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 119 9e-29 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 118 2e-28 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 108 1e-25 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 108 1e-25 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 103 7e-24 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 97 5e-22 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 97 7e-22 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 94 4e-21 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 93 9e-21 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 91 4e-20 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 89 2e-19 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 89 2e-19 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 87 4e-19 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 87 7e-19 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 84 6e-18 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 83 1e-17 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 83 1e-17 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 82 2e-17 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 80 5e-17 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 74 6e-15 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 73 1e-14 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 69 1e-13 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 69 1e-13 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 66 1e-12 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 65 2e-12 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 63 8e-12 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 63 8e-12 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 62 1e-11 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 61 4e-11 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 59 1e-10 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 58 3e-10 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 58 3e-10 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 58 3e-10 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 55 2e-09 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 53 8e-09 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 48 3e-07 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 140 bits (352), Expect = 5e-35 Identities = 98/307 (31%), Positives = 163/307 (53%), Gaps = 20/307 (6%) Query: 5 VNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLF 64 VNA L KRF +A R+++ G I G +G NGAGKTT ++ +LG+++P+ G + + Sbjct: 5 VNASALSKRFGQRYAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVE 63 Query: 65 G---KPLGADPSVFQRVGALVEQAAAYPLLTAE----ENLRHAALLKGLDPSRAVPEVME 117 G + G + + R+G V + PL T E L ++ E +E Sbjct: 64 GVNPRSPGFE-KLLPRIG-YVPELPVVPLWTTPCILLETLARLEGYTSVEARVRAREALE 121 Query: 118 ELGLLPYARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRKR 177 +GL LS+G R+R+ +A+AF+G+ LL+LDEP +GLDP + +R +LR Sbjct: 122 VVGLAGECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTV 181 Query: 178 ADEGAAVLVSSHMLDELSRVADHIGIIHRGRMVAQFSGKELDTQV----TRSLVITTVDD 233 A EGA V+VSSH+L EL +A H+ ++ ++ F G + + T ++++ + Sbjct: 182 AREGATVIVSSHILRELEDIATHVLVLKTDQL---FYGSIEELRAWLSGTPRIILSVAEP 238 Query: 234 GRALAVLRSAGYEA--VLDHGRIVCTGEAALGAPERIAALLVHEGVPPRTMELRQESLEA 291 RA+ VLR G+ A + G++V E A P R+ +LL+ E + + + SLE Sbjct: 239 ERAVEVLRRGGFNAYTINKGGQLVVAVEGA-DDPARVLSLLLAENIEISEYRVEKASLEE 297 Query: 292 LFMRLIG 298 +++L+G Sbjct: 298 AYLKLVG 304 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 135 bits (340), Expect = 1e-33 Identities = 107/304 (35%), Positives = 162/304 (53%), Gaps = 30/304 (9%) Query: 4 LVNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSL 63 ++ GL KR+ V A+R + + G +FG++G NGAGKTTTIR+L+G RPT+GS + Sbjct: 4 VIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARV 63 Query: 64 FGKPL---GADPSVFQRVGALVEQAAAYPLLTAEENLRHAALLKGLDPSRAVPEVMEELG 120 FG L GA V +RVG + + Y ++ L + L G SR V + E Sbjct: 64 FGVELYNPGAS-GVRRRVGYVPGEFEFYGGVSGGRMLDYWCRLVG-GCSRGVVRELLEAF 121 Query: 121 LLPYARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRKRADE 180 LP R + S+G +Q LAL AF +P L+++DEP GLDP + +R +A E Sbjct: 122 PLPLERAVGTY-SRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDFVRSKARE 180 Query: 181 GAAVLVSSHMLDELSRVADHIGIIHRGRMVA--------QFSGKELDTQVTRSLVITTVD 232 G V SSH+L E+ RVAD +G++ G +VA + SGK + +V+++L + Sbjct: 181 GVTVFFSSHVLSEVQRVADRVGLLRSGVLVALEDVSSLLRKSGKVVKARVSKNLSPDRLA 240 Query: 233 -DGRALAVLRSAG-YEAVLDHGRIVCTGEAALGAPERIAALLVHEGVPPRTMELRQESLE 290 DG + V+RS G E V+ G+ A E + +L+ G+ +E+R +LE Sbjct: 241 VDG--VRVIRSNGELELVVTSGK----------ALESVLRMLLDAGL--EDLEVRDATLE 286 Query: 291 ALFM 294 +FM Sbjct: 287 EVFM 290 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 132 bits (331), Expect = 1e-32 Identities = 96/307 (31%), Positives = 162/307 (52%), Gaps = 26/307 (8%) Query: 13 RFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLFGKPLGADP 72 R R + A+ +DL + GT+F +G NGAGKTT +++L ++ P +G + G + + Sbjct: 22 RARTIRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREA 81 Query: 73 S-VFQRVGALVE-QAAAYPLLTAEENLRHAALLKGLDP---SRAVPEVMEELGLLPYARV 127 + V R+G ++ + A Y L+ +NL + L G+ P R V E++E +GL +A V Sbjct: 82 NNVRSRIGVVLGGERALYWRLSGWDNLWFFSQLYGIPPREAKRRVKELLEIVGLEEWAHV 141 Query: 128 QARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRKRADEGAAVLVS 187 + + S+G +QRL +A+ + DP +LLLDEP GLDP E+R+++R+ EG VL++ Sbjct: 142 RVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVLLT 201 Query: 188 SHMLDELSRVADHIGIIHRGRMVAQFSGKELDTQVTRSLVI--TTVDDGRALAVLRSAGY 245 +H + E ++D + II +GR+VA+ ++L + V VI + R +L G Sbjct: 202 THYMVEAEELSDRVAIISKGRIVAEGPPEDLKSLVGGESVIELKVMGGDRVSMLLERLG- 260 Query: 246 EAVLDHGRIVCTGE--------AALGAP----ERIAALLVHEGVPPRTMELRQESLEALF 293 GR++ E + P E + A L R +++R SLE +F Sbjct: 261 ------GRVISVVERDGARVFRVLVSEPDSFIEALLAELTRINASIRGLDVRSPSLEDVF 314 Query: 294 MRLIGQE 300 ++L G E Sbjct: 315 IKLAGGE 321 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 128 bits (321), Expect = 2e-31 Identities = 100/291 (34%), Positives = 148/291 (50%), Gaps = 3/291 (1%) Query: 1 MTDLVNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGS 60 M ++ ARG+ K++R + +DL + G G VG NGAGKTT I++ LG+ R G Sbjct: 1 MDTVLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGR 60 Query: 61 VSLFGKPLGADPSVFQRVGALVEQAAAYPLLTAEENLRHAALLKGLDPSRAVPEVMEELG 120 V L G +P + VG + E+ + E L AA + G PSR V + G Sbjct: 61 VLLNGLDPWREPRAREGVGVVFERPNLPSSMPVVEFLESAAAIIGSSPSR-VDWAIRAAG 119 Query: 121 LLPYARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVE-LRAMLRKRAD 179 L + LS G +QR A+A A LG+PR L+ DEP + LDP E LR + R + Sbjct: 120 LEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLNRE 179 Query: 180 EGAAVLVSSHMLDELSRVADHIGIIHRGRMVAQFSGKELDTQVTRSLVITTVDDGRALAV 239 G ++LVSSH++ EL RVA I ++ GR+ A+ S ++L + + + T + A + Sbjct: 180 HGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDLFRRAGLAR-LRTSNPSLAAEL 238 Query: 240 LRSAGYEAVLDHGRIVCTGEAALGAPERIAALLVHEGVPPRTMELRQESLE 290 LRS G+EA D +V + L A L EGV ++L + +E Sbjct: 239 LRSLGFEAREDGLGVVVRVDGPLHRFYEALARLGREGVEVLGVDLVEPGVE 289 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 122 bits (306), Expect = 1e-29 Identities = 80/209 (38%), Positives = 114/209 (54%), Gaps = 3/209 (1%) Query: 5 VNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLF 64 V A G+ KR W ++D+ L + G+++G VG NGAGKTT R LLG+ R G V+L Sbjct: 9 VEAEGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALL 68 Query: 65 GKPL-GADPSVFQRVGALVEQAAAYPLLTAEENLRHAALLKGLDPSRAVPEVMEEL-GLL 122 G+P+ A S+F+RV L E Y +T E LR A + G++ E L GL Sbjct: 69 GEPVERAGGSLFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLEGYLEEASRLSGLG 128 Query: 123 PYARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRKRAD-EG 181 + R S+G R+RL +A P L +LDEP GLDP V +R +L++ ++ G Sbjct: 129 GRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERHG 188 Query: 182 AAVLVSSHMLDELSRVADHIGIIHRGRMV 210 VL+SSH + E+ V I +I GR+V Sbjct: 189 VTVLLSSHNMYEVESVCSEITMISSGRIV 217 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 119 bits (298), Expect = 9e-29 Identities = 93/306 (30%), Positives = 150/306 (49%), Gaps = 13/306 (4%) Query: 4 LVNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSL 63 +V A L K + AV + + G +F +G NGAGKTTTI+ML ++RPT+G + Sbjct: 6 MVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWI 65 Query: 64 FGKPLGADPSVFQRVGALVEQ-AAAYPLLTAEENLRHAALLKGLDPSRA---VPEVMEEL 119 G + +P +RV LV Q A ++ +N+ A L GL S A EV++ L Sbjct: 66 AGYSIVREPGNVRRVIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEARERTREVLDYL 125 Query: 120 GLLPYARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRKRAD 179 L+ A + S G R++L +A + + P++L LDEP GLD L + Sbjct: 126 DLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLKR 185 Query: 180 EGAAVLVSSHMLDELSRVADHIGIIHRGRMVAQFSGKELDTQVTRSLVITTVDDGR---- 235 +L+++H ++E ++D + II RGR+VA+ + +EL +V V + D Sbjct: 186 SAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEELKARVKGETVYIELKDPEYTEP 245 Query: 236 -ALAVLRSAGYEAVLDHGRI-VCTGEAALGAPERIAALLVHEGVPPRTMELRQESLEALF 293 LA+ G E + G++ V A PE AL G P + + + + +LE +F Sbjct: 246 LVLALKEKLGLEPSVVEGKVAVRVDRADTLLPELARAL---NGFPVKAISITRATLEDVF 302 Query: 294 MRLIGQ 299 + L G+ Sbjct: 303 IELTGR 308 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 118 bits (296), Expect = 2e-28 Identities = 79/237 (33%), Positives = 127/237 (53%), Gaps = 14/237 (5%) Query: 4 LVNARGLGKRF-------RDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRP 56 ++ ARGL KRF R V A++ + + G I+ F+G NGAGKTTT+R+L ++ P Sbjct: 5 MIEARGLVKRFVSGRIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDP 64 Query: 57 TTGSVSLFGKPLGADP-SVFQRVGALVE-QAAAYPLLTAEENLRHAALLKGLDPSRA--- 111 G + G + + V +R+G ++ + Y LT ENL + + G+ Sbjct: 65 DGGEARVAGFDVVKERWEVRKRIGVMLSVERGFYWKLTGRENLYYFGRIYGIPQGELKSR 124 Query: 112 VPEVMEELGL--LPYARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVE 169 + EV++ +GL L A +S G + RL LA+ L DP +L+LDEP GLDPA Sbjct: 125 IKEVLDLVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASART 184 Query: 170 LRAMLRKRADEGAAVLVSSHMLDELSRVADHIGIIHRGRMVAQFSGKELDTQVTRSL 226 +R ++R A EG + +++H + E ++D +GII GR+ + + EL +V S+ Sbjct: 185 IRGVIRSLASEGRTIFITTHNMVEAEMISDRVGIIIGGRIAMEGTPDELKRRVFSSI 241 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 108 bits (271), Expect = 1e-25 Identities = 77/234 (32%), Positives = 121/234 (51%), Gaps = 9/234 (3%) Query: 5 VNARGLGKRFRD-VWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSL 63 V RG+ K + D V A+ ++D L G + +G NGAGKTT +R+L G I+PT G + + Sbjct: 13 VAMRGIVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYV 72 Query: 64 FGKPL---GADPSVFQRVGALVEQAAAYPLLTAEENLRHAALLKGLDPSRA---VPEVME 117 +G+ + G ++ + + +Q +T EEN+ GL S A E E Sbjct: 73 WGRKVSWRGPWDAIRNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRTLETAE 132 Query: 118 ELGLLPYARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRKR 177 LGL L G RQR+ + KA G ++L+LDEP + L P +L + LR Sbjct: 133 RLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLRLL 192 Query: 178 ADEGAAVLVSSHMLDELSRVADHIGIIHRGRM--VAQFSGKELDTQVTRSLVIT 229 D G +V+ +H L E+ RVAD + ++ RGR+ V + G+ + ++ R +V T Sbjct: 193 KDMGVSVVYITHKLGEVVRVADRVTVLRRGRVSAVIEDVGRTSEEELARLMVGT 246 Score = 68.2 bits (165), Expect = 2e-13 Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 21/223 (9%) Query: 3 DLVNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVS 62 +L++ RG+ V VR++ L + G I G G+ G G+ + ++G+ RP GS+ Sbjct: 261 ELLSVRGVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIE 320 Query: 63 LFGKPLGADPSVFQRVGAL--------------VEQAAAYPLLTAEENL--RHAALLKGL 106 + G+ + ++ G V + A+ TA + L R + L Sbjct: 321 VQGRRIEGSLDFYRAGGGYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRRSRLE--- 377 Query: 107 DPSRAVPEVMEELGLLPYARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAG 166 D R + E + P+ V LS GN+Q++ + L +LL+ P GLD A Sbjct: 378 DLFRRLVERFRLVARSPWTPVG--RLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIAT 435 Query: 167 IVELRAMLRKRADEGAAVLVSSHMLDELSRVADHIGIIHRGRM 209 +R +L + A +GA +L+ S LDE+ ++D I ++ GR+ Sbjct: 436 TSFVRNLLSELARQGAGILLVSTDLDEILELSDRIYVMSGGRV 478 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 108 bits (271), Expect = 1e-25 Identities = 97/302 (32%), Positives = 139/302 (46%), Gaps = 12/302 (3%) Query: 5 VNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLF 64 V ARGL KRF AV + + G +G NG+GKTT +RM+ G++RP+ GSV + Sbjct: 5 VEARGLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVC 64 Query: 65 GKPLGADPSVFQR--VGALVEQAAAYPLLTAEENLRHAALLKGLDPSRAVPEVMEELGLL 122 G + D R +G + +T E + L GL P A E L +L Sbjct: 65 GYDVWGDGWREARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREARRVLEML 124 Query: 123 PYARVQAR---HLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRKRAD 179 + V R LS G R+ L +A A +P +++LDEPG+GLD L A LRK A Sbjct: 125 GFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASLRK-AF 183 Query: 180 EGAAVLVSSHMLDELSRVADHIGIIHRGRMVAQFSGKELDTQVTRSLVITTVDDGRALAV 239 +G VL SSH E +D + I+HRGR+ A +EL + + D RA Sbjct: 184 KGRTVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPRELIQRYAPKPRVRVWAD-RAPDG 242 Query: 240 LRSAGYEAVLDHGRIVCTGEAALGAPERIAALLVHEGVPPRTMELRQESLEALFMRLIGQ 299 L I G+ A RIA+ G+ +E+ + SL +F + G+ Sbjct: 243 LEPVHTGPGFSDYLIEAPGDVA-----RIASAYSGAGILVERIEVLKPSLREVFFAVTGE 297 Query: 300 EV 301 E+ Sbjct: 298 EM 299 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 103 bits (256), Expect = 7e-24 Identities = 79/216 (36%), Positives = 116/216 (53%), Gaps = 21/216 (9%) Query: 9 GLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLFGKPL 68 G+ K + +R + L ++ G I GLNGAGKTT++R+L+G++ +G + L Sbjct: 19 GVAKSVKGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARV----L 74 Query: 69 GADP--SVFQRV----GALVEQAAAYPLLTAEEN-LRHAALLKGLDPSRAVPEVMEE--- 118 G DP F+RV G L E A+ Y LT EN L +A L G R V E++E Sbjct: 75 GVDPWGGGFERVKGEVGYLPEDASVYERLTGMENILFYARLYSGW---RDVEELVENAVF 131 Query: 119 ---LGLLPYARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLR 175 L AR +A S+G ++RL L + PRL++LDEP +G+DP ++ +LR Sbjct: 132 YSGLSREDLAR-RAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILR 190 Query: 176 KRADEGAAVLVSSHMLDELSRVADHIGIIHRGRMVA 211 + EG A+LV++H L +AD + IIH G VA Sbjct: 191 GLSREGRAILVTTHDLALAEEIADRVTIIHGGSTVA 226 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 97.1 bits (240), Expect = 5e-22 Identities = 82/291 (28%), Positives = 143/291 (49%), Gaps = 11/291 (3%) Query: 5 VNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLF 64 + G+ KRF V AV +DL ++ G F +G +G GKTTT+R++ G+ P G + + Sbjct: 4 IRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILID 63 Query: 65 GKPLGADPSVFQRVGALVEQAAAYPLLTAEENLRHAALLK----GL---DPSRAVPEVME 117 G+ + + V + + A YP ++ +N+ L+ GL D R V EV + Sbjct: 64 GEDVTFKDPKDRNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIEVAK 123 Query: 118 ELGLLPYARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRK- 176 L + + LS G +QR+ALA+A + P++ L+DEP + LD + +RA L+K Sbjct: 124 LLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELKKL 183 Query: 177 RADEGAAVLVSSHMLDELSRVADHIGIIHRGRMVAQFSGKELDTQVTRSLVITTVDDGRA 236 + D + +H E +AD I ++++GR+V + +E+ + + V T + G Sbjct: 184 QKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEVYMRPKHTFVATFI--GAP 241 Query: 237 LAVLRSAGYEAVLDHGRIVCTGEAALGAPERIAALLVHEGVPPRTMELRQE 287 L E+V + I C G + PE +++ +GV + +R E Sbjct: 242 PMNLVECDVESVGEDLWISCPG-FSRRVPEEARSVIESKGVRKIYLGIRPE 291 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 96.7 bits (239), Expect = 7e-22 Identities = 69/219 (31%), Positives = 111/219 (50%), Gaps = 6/219 (2%) Query: 5 VNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLF 64 V G+ K F +V AVRD++L +E +G +G+GKTT + ++ G+ +P+ G + Sbjct: 4 VKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFN 63 Query: 65 GKPLGADPSVFQRVGALVEQAAAYPLLTAEENLRHAALLKGLDPSRAVPEVMEELGLLPY 124 + P + +G + + A YP +T EN+ L+ +V+ LL Sbjct: 64 DVDVTDLPPNKRNIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVAKLLGI 123 Query: 125 ARVQARH---LSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRKRADE- 180 + R+ LS G +QR+ALA+A + +P +LLLDEP + LD +++R+ L+K E Sbjct: 124 EGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQKEL 183 Query: 181 GAAVLVSSHMLDELSRVADHIGIIHRGRMVAQFSGKELD 219 G + +H E +AD I II G V Q GK D Sbjct: 184 GITAIYVTHDQSEALAMADRIAIIASG--VIQQVGKPWD 220 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 94.0 bits (232), Expect = 4e-21 Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 21/217 (9%) Query: 17 VWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMI-----RPTTGSVSLFGKPL-GA 70 + +++L L +E G+I +G NGAGKTT ++ + G+I R T GS+ L G+ + Sbjct: 18 ILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNR 77 Query: 71 DPSVFQRVGAL--VEQAAAYPLLTAEENLRHAALLKGL--DPSRAV----PEVMEELGLL 122 +P R G + +E + LT EENL A G D R+V P + E LG Sbjct: 78 EPDEIARRGVIYVMEGRRIFKELTTEENLVSVAYAAGASRDDIRSVLSYFPRLKERLG-- 135 Query: 123 PYARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRK-RADEG 181 +A +LS G +Q LA+A A L P+LL+LDEP GL P ++ A ++ +EG Sbjct: 136 ----EKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHREEG 191 Query: 182 AAVLVSSHMLDELSRVADHIGIIHRGRMVAQFSGKEL 218 +L++ + ++D+ +I GR+V + S +EL Sbjct: 192 LTILLAEQNARKALEISDYGYVIENGRIVLEGSAEEL 228 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 92.8 bits (229), Expect = 9e-21 Identities = 69/194 (35%), Positives = 93/194 (47%), Gaps = 7/194 (3%) Query: 1 MTDLVNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGS 60 M L+ + K W +R + L L PG G NG+GKTT +R+ G+ P+ G Sbjct: 1 MAALLRLENVWKMLGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGR 60 Query: 61 VSLFGKPLGADPSVFQRVGALVEQAAAYPLLTAEENLRHAALLKG--LDPSRAVPEVMEE 118 VS +G P G V G + Y LT EN+ + L G L E Sbjct: 61 VS-WGCPRGPRGCV----GYVGHTPMVYGDLTVWENVEFFSSLHGGSLGDYPLAAEAWRL 115 Query: 119 LGLLPYARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRKRA 178 LGL Y A LS G R+RL + +A LG+PRLLLLDE GLD L +LR Sbjct: 116 LGLEKYGSHLASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLLRLAL 175 Query: 179 DEGAAVLVSSHMLD 192 EG A+L+++ +L+ Sbjct: 176 GEGLALLMTTPLLE 189 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 90.9 bits (224), Expect = 4e-20 Identities = 77/284 (27%), Positives = 135/284 (47%), Gaps = 11/284 (3%) Query: 5 VNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLF 64 + + KRF + A+ + L + G IF +G +G GKTTT+R++ G P G V + Sbjct: 4 IRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIG 63 Query: 65 GKPLGADPSVFQRVGALVEQAAAYPLLTAEENLRHAALLKGLDPSRAVPEVMEELGLLPY 124 + + + + + A +P + +N+ + L+ L S V V LL Sbjct: 64 SRDVTMLKPYERNTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWAAELLEI 123 Query: 125 ARVQARH---LSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELR-AMLRKRADE 180 + R+ LS G +QR+A+A+A + +P +LL+DEP + LD +++R ++R + Sbjct: 124 DHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQKRL 183 Query: 181 GAAVLVSSHMLDELSRVADHIGIIHRGRMVAQFSGKELDTQVTRSLVIT-----TVDDGR 235 G ++ +H +E ++ + +++RGR+ + E+ + V T TV DGR Sbjct: 184 GVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVYEKPATYFVATFIGRSTVLDGR 243 Query: 236 ALAVLRSAGYEAVLDHG-RIVCTG-EAALGAPERIAALLVHEGV 277 VL S L+ G IV T E L ER+ ++ E V Sbjct: 244 VSEVLGSGMVRVALEGGLSIVGTDMEGGLRQGERVKVVIRPERV 287 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 88.6 bits (218), Expect = 2e-19 Identities = 59/209 (28%), Positives = 107/209 (51%), Gaps = 4/209 (1%) Query: 5 VNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLF 64 V G+ KRF A++ +DL ++ G +G +G GKTTT+R++ G+ RP G V Sbjct: 4 VRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFD 63 Query: 65 GKPLGADPSVFQRVGALVEQAAAYPLLTAEENLRHAALLKGLDPSRAVPEVMEELGLLPY 124 G+ + P + V + + A +P + +N+ +K L V V LL Sbjct: 64 GRDVTGLPPKDRNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAAELLEI 123 Query: 125 ARVQARH---LSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRK-RADE 180 + R+ LS G +QR+A+A+A + +P +LL+DEP + LD +++R+ ++K + Sbjct: 124 DHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKLQRRL 183 Query: 181 GAAVLVSSHMLDELSRVADHIGIIHRGRM 209 G ++ +H E + D I +++ G + Sbjct: 184 GVTMIYVTHDQVEAMVIGDRIVVMNFGEI 212 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 88.6 bits (218), Expect = 2e-19 Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 8/203 (3%) Query: 19 AVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLFGKPLGADPSV---- 74 A+R++ L + G + +G +G+GKTT + ++ G+ RP G V + G + + Sbjct: 29 ALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGEELRR 88 Query: 75 --FQRVGALVEQAAAYPLLTAEENLRHAALLKGLDPSRAVPEVMEELGLLPYARVQARHL 132 +RVG + +Q P LTA EN+ L G E++ +GL R L Sbjct: 89 FRLERVGYVFQQHNLIPTLTALENILLPMALAGKANRLRGQELLRRVGLGGKERRYPEEL 148 Query: 133 SQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPA-GIVELRAMLRKRADEGAAVLVSSHML 191 S G +QRLA+A A DP +++ DEP LD A G +R +L + G V++++H Sbjct: 149 SGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEAHSRGKTVVLTTHD- 207 Query: 192 DELSRVADHIGIIHRGRMVAQFS 214 ++R+AD + +I GR+ +S Sbjct: 208 PRVARMADRVAVIEDGRLRGVYS 230 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 87.4 bits (215), Expect = 4e-19 Identities = 65/224 (29%), Positives = 109/224 (48%), Gaps = 6/224 (2%) Query: 1 MTDLVNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGS 60 MT +++ R + KRF + A++ + + G G +G NGAGKTT ++ G+ P G Sbjct: 1 MTIILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGR 60 Query: 61 VSLFGKPLGADPSVFQ-RVGALVEQAAAYPL--LTAEENLRHAALLKGLDPSRAVPEVME 117 V G + P+ + R G PL LT N+ ALL+ D A ME Sbjct: 61 VIYKGVDITGWPAYRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAME 120 Query: 118 EL---GLLPYARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAML 174 + GL + A+ L+ ++RL LA+A P LLLLDE GL P + +L L Sbjct: 121 AIDMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTL 180 Query: 175 RKRADEGAAVLVSSHMLDELSRVADHIGIIHRGRMVAQFSGKEL 218 + + G +++ H++ + A+ + ++H G +A+ + +E+ Sbjct: 181 LEISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREV 224 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 86.7 bits (213), Expect = 7e-19 Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 13/234 (5%) Query: 14 FRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLFGKPLGADPS 73 + +V A+R + +I +G +G GKTT ++++ G+++P G V G P Sbjct: 15 YGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFGGVDYTGLPP 74 Query: 74 VFQRVGALVEQAAAYPLLTAEENLRHAALLKGL---DPSRAVPEVMEELGLLPYARVQAR 130 + VG + + A +P +T +N+ +G + R V +E +GL P R Sbjct: 75 ERRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWALETVGLTPPREFMGR 134 Query: 131 H---LSQGNRQRLALAKAFLGDPRLLLLDEPGNGLD----PAGIVELRAMLRKRADEGAA 183 LS G +QR+ALA+A +P +LLLDEP + LD + EL+ + RK G+ Sbjct: 135 RVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQRKL---GST 191 Query: 184 VLVSSHMLDELSRVADHIGIIHRGRMVAQFSGKELDTQVTRSLVITTVDDGRAL 237 ++ +H E +AD + I+ GR+V + E+ T+ V T D + Sbjct: 192 MIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEVYTRPANVYVATFFGDANII 245 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 83.6 bits (205), Expect = 6e-18 Identities = 62/227 (27%), Positives = 109/227 (48%), Gaps = 9/227 (3%) Query: 1 MTDLVNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGS 60 M L+ RGL + ++ +D+ L G +G +G+GK+T ++ + ++ P +GS Sbjct: 1 MARLLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGS 60 Query: 61 VSLFGKPL----GADPSVFQR-VGALVEQAAAYPLLTAEENLRH----AALLKGLDPSRA 111 + G + G+ + +R +G L + + +P +T N+ + A L D Sbjct: 61 IVFRGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAEER 120 Query: 112 VPEVMEELGLLPYARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELR 171 + + LG+ A LS G +QR ALA+A +P +LLLDEP + LDP ++ Sbjct: 121 AVKYLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVL 180 Query: 172 AMLRKRADEGAAVLVSSHMLDELSRVADHIGIIHRGRMVAQFSGKEL 218 L + A G A++V +H D +VAD + + G + + EL Sbjct: 181 EALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSEL 227 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 82.8 bits (203), Expect = 1e-17 Identities = 66/224 (29%), Positives = 113/224 (50%), Gaps = 11/224 (4%) Query: 4 LVNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSL 63 L+ + + + + A+ + L + G I +G NGAGKTTT+ + G+++P GS+ Sbjct: 6 LLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIW 65 Query: 64 FGKPLGADPS---VFQRVGALVEQAAAYPLLTAEENLRHAALLKGLDP--SRAVPEVMEE 118 G+ + P+ V + + + E +P LT ENLR AA + ++ +V Sbjct: 66 QGRDITGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRVAASTRRAKEHFQDSLEQVYTI 125 Query: 119 LGLLPYARVQ-ARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDP---AGIVELRAML 174 +L R Q A LS G +Q LA+A+A + P LL++DEP GL P ++ L + L Sbjct: 126 FPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLASRL 185 Query: 175 RKRADEGAAVLVSSHMLDELSRVADHIGIIHRGRMVAQFSGKEL 218 R+ + G +L+ + +VAD ++ GR+V + + EL Sbjct: 186 RE--ELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDEL 227 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 82.8 bits (203), Expect = 1e-17 Identities = 76/295 (25%), Positives = 124/295 (42%), Gaps = 15/295 (5%) Query: 17 VWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLFG---KPLGADPS 73 V A++ + G + +G NGAGKTT ++ ++G+++P G + + G +P G S Sbjct: 18 VHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPKGPGDS 77 Query: 74 VFQRVGALVEQAAAYPLLTAEENLRHAALLKG----LDPSRAV-PEVMEELGLLPYARVQ 128 + + + YP + A E+L ++ G L +R + E E LGL Sbjct: 78 LRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAEASEALGLNIDPDRY 137 Query: 129 ARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRKRADEGAAVLVSS 188 + RQRL + KA R +LLDEP L P + + A GAAVL+ + Sbjct: 138 LGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAASGAAVLLVT 197 Query: 189 HMLDELSRVADHIGIIHRGRMVAQFSGKELDTQVTRSLVITTVDDGRALAVLRSAGYEAV 248 H + E AD + I+ +G V + +V + + G LA + A Sbjct: 198 HRIGEAMEHADRLVILRKGVKVYEGPPPSSTEEVAKLMF------GEVLAPREPKTFTAA 251 Query: 249 LDHGR-IVCTGEAALGAPERIAALLVHEGVPPRTMELRQESLEALFMRLIGQEVP 302 GR ++ +L R+A L V +G + E LF ++G P Sbjct: 252 TSTGRPVLSVDRVSLPPRLRMARLEVRQGEVVGVAGVAGNGQEELFEVIVGLRKP 306 Score = 62.8 bits (151), Expect = 1e-11 Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 15/213 (7%) Query: 25 LVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLFGKPLGADPSVFQR---VGAL 81 L + G + G G+ G G+ +++G+ +P G + + G + P + +R +G + Sbjct: 275 LEVRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRLGLGVI 334 Query: 82 VEQAAAYPLLTAEE----------NLRHAALLKGLDPSRAVPEVMEELGLLPYA-RVQAR 130 E+ + L+ E R ++ + E++ ++G+ + R Sbjct: 335 PEERLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGIKAVSPRQMVD 394 Query: 131 HLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRKRADEGAAVLVSSHM 190 LS GN QRL LA+ PRLL+ P GLD G + M+R ++ G VLV Sbjct: 395 ELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRMSSERG-GVLVIDED 453 Query: 191 LDELSRVADHIGIIHRGRMVAQFSGKELDTQVT 223 LD L RV++ I + G + + E + VT Sbjct: 454 LDFLLRVSNKIYVASGGIVKGPYLPTEEKSIVT 486 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 82.0 bits (201), Expect = 2e-17 Identities = 65/232 (28%), Positives = 116/232 (50%), Gaps = 19/232 (8%) Query: 5 VNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLF 64 V GL D ++ + +PGT+ +G +G+GK+T IR++ +I G+ + Sbjct: 6 VRVSGLNVWITDKHILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGA-RVE 64 Query: 65 GKP-------LGADPSVFQR-VGALVEQAAAYPLLTAEENLRHAALLKGLDPSRAVPEVM 116 G+ + DP +R G + ++ +P +T EN+ L GL ++ + + Sbjct: 65 GEVWINNMNVMKEDPYNIRRYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEI 124 Query: 117 EELGLLP---YARVQAR------HLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGI 167 E L + V+ R LS G RQRL+LA+A PR+LLLDEP +DP Sbjct: 125 VEWALKMAHLWDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVST 184 Query: 168 VEL-RAMLRKRADEGAAVLVSSHMLDELSRVADHIGIIHRGRMVAQFSGKEL 218 V++ ++++ +E A V++ +H + +R++D I ++ GR++ KEL Sbjct: 185 VKIEQSIVEYAKEEMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKEL 236 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 80.5 bits (197), Expect = 5e-17 Identities = 63/184 (34%), Positives = 98/184 (53%), Gaps = 9/184 (4%) Query: 29 PGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLFGKPLGADPSVFQRVGALVEQAAAY 88 PG + +G NGAGKTT ++ +LG+I+P G V L G P + R V Q + Sbjct: 28 PGLV-QIIGPNGAGKTTFLKAILGLIKPARGRVFLDGFEATGRPEMVGRYAGYVPQNPSA 86 Query: 89 PLL---TAEENLRHAALLKGLDPSRA-VPEVMEELGLLPYARVQAR--HLSQGNRQRLAL 142 P L T E + + L+G+ +R EV+ LG+ +++R LS G QR+ + Sbjct: 87 PKLSPMTVREFVETSLRLRGVTRARERAVEVLHTLGIRGEV-LESRLWELSMGMLQRVFI 145 Query: 143 AKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRKRADEGAAVLVSSHMLDELSRVADHIG 202 A+A DP++L++DEP +DPAG +E+ ++ A E VL++SH L D I Sbjct: 146 ARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAGLARE-RLVLMTSHDPSLLLGHTDIIV 204 Query: 203 IIHR 206 +I+R Sbjct: 205 VINR 208 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 73.6 bits (179), Expect = 6e-15 Identities = 60/221 (27%), Positives = 113/221 (51%), Gaps = 21/221 (9%) Query: 8 RGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLFGK- 66 R LG+ V AV +DL + G + VG +G GKTT + ++G+ P+ G++ G+ Sbjct: 26 RILGRPDAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGEL 85 Query: 67 ----PLGADPSVFQRVGALVEQ--AAAYPLLTAEENLRHAALLKGL----DPSRAVPEVM 116 L D + +++ + + + PL+ + + ++ GL + R E++ Sbjct: 86 LTPHRLARDRRLRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEML 145 Query: 117 EELGLLP----YARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLD---PAGIVE 169 E +GL P Y R + LS G RQR+A+A+ + +P +++ DEP + +D A I++ Sbjct: 146 ETVGLTPGREFYWR-KPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILD 204 Query: 170 LRAMLRKRADEGAAVLVSSHMLDELSRVADHIGIIHRGRMV 210 L +R GA +++ +H + VAD I +++ G++V Sbjct: 205 LIMDYHRRT--GATIVLITHDIAVARAVADRIAVMYLGKIV 243 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 72.8 bits (177), Expect = 1e-14 Identities = 61/203 (30%), Positives = 94/203 (46%), Gaps = 19/203 (9%) Query: 20 VRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLFGKPLGADPSVFQRVG 79 +R + L+PG++ +G NG+GKTT +R+L G+I+P+ G V + G P G RV Sbjct: 22 LRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEVCGSPPG-------RVR 74 Query: 80 ALVEQAAAYPLLTAEENLRHAALLKGLDPSRAV-------PEVMEELGLLPYARVQAR-- 130 ++ A A P + ALL S V EV+ LG + + R Sbjct: 75 RMLGYAPASPEVDPRLKAVEVALLYRYGVSEGVAWGRRDWEEVLAALGEMGVGELAWRRW 134 Query: 131 -HLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRKRADEGAAVLVSSH 189 LS G R+ + LA P L LLDEP + LD + + + +LR G A +V + Sbjct: 135 GELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRSL--RGRATIVYTT 192 Query: 190 MLDELSRVADHIGIIHRGRMVAQ 212 + AD + ++ G + AQ Sbjct: 193 HDPLAAMAADSVIMLREGLLHAQ 215 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 69.3 bits (168), Expect = 1e-13 Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 15/196 (7%) Query: 1 MTDLVNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGS 60 + D++ A G +R + + ++D+++ + PG++ VG +GAGKTT +RM+LG + Sbjct: 437 LQDVLRAFGAERRVVERYVLKDVNITVNPGSVAAVVGASGAGKTTLLRMILGK------A 490 Query: 61 VSLFGKPLGADPSVFQ----RVGALVEQAAAYPLLTAEENLRHAALLKGLDPSRAVPEVM 116 + + G+ D V + A + P E L H A G DP AV EV+ Sbjct: 491 LGIGGEGYRPDSGVVKIPTNTKAAALLPGELEPSFGGETLLEHVASKLG-DPGAAV-EVL 548 Query: 117 EELGL--LPYARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAML 174 +GL + R LS G ++R LA P LL++DE LDP + L Sbjct: 549 SSVGLGDAIFFRASFGELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLTARRIARKL 608 Query: 175 RKRA-DEGAAVLVSSH 189 K A +G ++VS++ Sbjct: 609 GKLARSKGITLIVSTN 624 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 69.3 bits (168), Expect = 1e-13 Identities = 63/235 (26%), Positives = 106/235 (45%), Gaps = 25/235 (10%) Query: 4 LVNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSL 63 ++ L KRF + A+ ++L +E G + +G NG+GKTT + ++ G +P G V Sbjct: 6 ILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLF 65 Query: 64 FGKPL-GADPSVFQRVGALVEQAAAYPL--LTAEENLRHAA-------LLKGLD------ 107 G+ + G P ++G + P LT EN+ AA L GL Sbjct: 66 KGRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWLG 125 Query: 108 -PSRAVPEVMEELGLLPYARVQAR---HLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLD 163 RA E LG + + R LS G + L +A+A + ++++DEP G++ Sbjct: 126 FEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVN 185 Query: 164 P--AGIVELRAMLRKRADEGAAVLVSSHMLDELSRVADHIGIIHRGRMVAQFSGK 216 P AG + R R ++G L+ H + + D + + G+++A SGK Sbjct: 186 PRLAGSIMERIKYLAR-EKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIA--SGK 237 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 65.9 bits (159), Expect = 1e-12 Identities = 64/243 (26%), Positives = 115/243 (47%), Gaps = 49/243 (20%) Query: 17 VWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTG-------------SVSL 63 V AV + L L+ G I G VG +G+GKTT + ++G+ RP TG +VS+ Sbjct: 27 VKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELEEAVSI 86 Query: 64 FGK-----------------------PLGADPS---VFQRVGALVEQ---AAAYPLLTAE 94 + P D S F+R +V+Q ++ P + Sbjct: 87 YEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMKVG 146 Query: 95 ENLRHAALLKGLDPS-----RAVPEVMEELGL-LPYARVQARHLSQGNRQRLALAKAFLG 148 E + + G++ S R V EV+E +GL +A LS G RQR+A+A+A Sbjct: 147 EIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIARALAL 206 Query: 149 DPRLLLLDEPGNGLDPAGIVELRAMLRKRADE-GAAVLVSSHMLDELSRVADHIGIIHRG 207 +P++L+LDEP + LD + ++ +LR+ + G L+ +H + + ++ + +++ G Sbjct: 207 NPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMYSG 266 Query: 208 RMV 210 +++ Sbjct: 267 KIM 269 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 65.1 bits (157), Expect = 2e-12 Identities = 67/216 (31%), Positives = 92/216 (42%), Gaps = 37/216 (17%) Query: 13 RFRDVW--------AVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPT-----TG 59 R RDVW +R + L G G G GK+T +R+ G+ G Sbjct: 5 RLRDVWYRYPGGGWVLRGVSLEAPRGITL-LAGPTGGGKSTILRVAAGLATRIYGGYLRG 63 Query: 60 SVSLFGKPLGADPSVFQRVGALVEQAAAYPL----LTAEENLRHAALLKGLDPSRAVPEV 115 V GKP+ LV Q Y L LT E L + GL P A E Sbjct: 64 EVEARGKPV------------LVPQD--YDLFILSLTPREELEYCYEASGLPPWEARREA 109 Query: 116 M---EELGLLPYARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRA 172 + EELG+ + LS G RQR+A+A A +LL+DEP DP G+ L Sbjct: 110 VRLAEELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVESLIR 169 Query: 173 MLRKRADEGAAVLVSSHMLDELSRVADHIGIIHRGR 208 +LR+ EG V+V+ H + L A + +++ GR Sbjct: 170 LLRRLDVEG--VVVAEHRVHYLLPAASSVYLVYDGR 203 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 63.2 bits (152), Expect = 8e-12 Identities = 64/233 (27%), Positives = 104/233 (44%), Gaps = 39/233 (16%) Query: 15 RDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLFGKPLGADPSV 74 R V AV + + G +F VG +G GKTTT + +L +++ T G V F KP Sbjct: 45 RFVKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRV--FFKPKKEVLEE 102 Query: 75 FQRVGA--------------------------LVEQ---AAAYPLLTAEENLRHAALLKG 105 +R G +V Q + P T + L L+ Sbjct: 103 LERRGVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHS 162 Query: 106 LDPSRA----VPEVMEELGLLPYARVQARH---LSQGNRQRLALAKAFLGDPRLLLLDEP 158 + +R V ++E + L P + R+ LS G RQR+A+A+AF+ +P L++ DEP Sbjct: 163 IGNAREREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEP 222 Query: 159 GNGLDPAGIVE-LRAMLRKRADEGAAVLVSSHMLDELSRVADHIGIIHRGRMV 210 + LD + E L +L R G ++L +H L + D I +++ G++V Sbjct: 223 VSMLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIV 275 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 63.2 bits (152), Expect = 8e-12 Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 25/195 (12%) Query: 30 GTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLFGKPLGADPS---VFQRVGALVEQAA 86 G + G +G NG GKTT +R+L G ++P G V G +P + +R Q Sbjct: 106 GQVVGLLGRNGTGKTTALRILAGELKPNLGRVE------GGEPEWDEILKRFRGSELQTY 159 Query: 87 AYPLLTAEENLRHAA----------------LLKGLDPSRAVPEVMEELGLLPYARVQAR 130 L+ + + H LLK D E+ E++GL R Sbjct: 160 FRKLVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGVALELAEQVGLDKVFDRDVR 219 Query: 131 HLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRKRADEGAAVLVSSHM 190 LS G Q++ + D + + DEP + LD + + ++ A GA V+V H Sbjct: 220 QLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAARPGAYVMVVEHD 279 Query: 191 LDELSRVADHIGIIH 205 L L V+D + I++ Sbjct: 280 LAVLDYVSDLVHILY 294 Score = 59.3 bits (142), Expect = 1e-10 Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 25/185 (13%) Query: 30 GTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLFGKPLGADPSVFQRVGALVEQAAAYP 89 G + G G NG GKTT +R L G ++P G+V + + L + + P Sbjct: 383 GEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYVEDL---------------RVSYKP 427 Query: 90 LLTAEENLRHAA---LLKGLDPSRAVP------EVMEELGLLPYARVQARHLSQGNRQRL 140 + E+L A +LK +P+ P E+++ + L + R LS G Q++ Sbjct: 428 QYISPESLPDATVEQVLKAANPAILAPGSWLNLELVKRMRLDKLLERRVRTLSGGELQKV 487 Query: 141 ALAKAFLGDPRLLLLDEPGNGLDPAGIVEL-RAMLRKRADEGAAVLVSSHMLDELSRVAD 199 A+A A + + LLDEP LD V + RA+ R AA LV H L L V+D Sbjct: 488 AVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALVVEHDLMILDYVSD 547 Query: 200 HIGII 204 I ++ Sbjct: 548 RIMLV 552 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 62.4 bits (150), Expect = 1e-11 Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 23/215 (10%) Query: 17 VWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSV------------SLF 64 V AV + L + G VG +G+GK+T + +I P V SL Sbjct: 20 VRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRILYSGVDLLSLA 79 Query: 65 GKPLGADPSVFQRVGALVEQAAAY--PLLT-----AEENLRHAALLKGLDPSRAVPEVME 117 G+ L + +G + + AY P T AE L H G + + +E Sbjct: 80 GEELRRYRG--REIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLASSGSEAESMAGDALE 137 Query: 118 ELGL-LPYARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRK 176 +G+ A V LS G RQR+A+A A +P++L+ DEP LD ++ +++K Sbjct: 138 LVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKIMDLMKK 197 Query: 177 RADE-GAAVLVSSHMLDELSRVADHIGIIHRGRMV 210 +E G V++ +H + + +D I +++ G +V Sbjct: 198 LQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELV 232 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 60.8 bits (146), Expect = 4e-11 Identities = 61/238 (25%), Positives = 113/238 (47%), Gaps = 23/238 (9%) Query: 5 VNARGLGKRFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLG--MIRPTTGSVS 62 + +GL + + + +D L+ G + +G NG+GK++ +++G + G + Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 63 LFG---KPLGADPSVFQRVGALVEQAAAYP------LLTAEENLRHAA--LLKGLDPS-- 109 L G K L + + + + P L+ A N R A L K DP Sbjct: 63 LDGESIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKIV 122 Query: 110 RAVPEVMEELGLLPYARVQARHL----SQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPA 165 + + E +LGL + R + S G ++R L +A + DP++++LDEP +GLD Sbjct: 123 KRMYEYATKLGL--DREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDID 180 Query: 166 GIVELRAMLRKRADEGAAVLVSSHMLDELSRV-ADHIGIIHRGRMVAQFSGKELDTQV 222 G+ + +++ D G V++ +H L+ V D + +++RG ++A+ G EL QV Sbjct: 181 GLKIVAEFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGSVLAR-GGAELARQV 237 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 59.3 bits (142), Expect = 1e-10 Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 12/206 (5%) Query: 17 VWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLFG----KPLGADP 72 V AV ++ + + G G VG +G+GKTT R++L + PT G + G K G Sbjct: 49 VKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGL 108 Query: 73 SVFQRVGALVEQ---AAAYPLLTAEENLRHAALLKGL---DPSRAVPEVMEELGLLPYAR 126 F+R ++ Q + P T + + G+ D + ++ ++GL Sbjct: 109 KEFRRRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQVGLNETHL 168 Query: 127 VQARH-LSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRK-RADEGAAV 184 + H S G RQR+A+A+ P ++LDEP + LD + ++ +L+ + Sbjct: 169 YRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTY 228 Query: 185 LVSSHMLDELSRVADHIGIIHRGRMV 210 L SH L + ++D+I +++ G++V Sbjct: 229 LFISHDLGVVRYMSDYIAVMYLGKIV 254 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 58.2 bits (139), Expect = 3e-10 Identities = 65/246 (26%), Positives = 111/246 (45%), Gaps = 31/246 (12%) Query: 20 VRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLFGKPLGADPSVFQRVG 79 +RD+ L + G + +G NG+GKTT +++ +++P GSV P +RVG Sbjct: 7 LRDVTLSIPRG-VTAILGANGSGKTTLLKLAARLLKPDRGSVE--------GP---RRVG 54 Query: 80 ALVEQA-AAYPLLTAEENLRHAALLKGLDPSRAVPEVMEELGLLPYARVQARHLSQGNRQ 138 A ++ + T E+L A +G +++ E GL + LS G + Sbjct: 55 AALQNPYLGFLGPTVAEDLARTAGGRG-----EALKLLREAGLEYASERSPYTLSMGEAR 109 Query: 139 RLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRKRADEGAAVLVSSHMLDELSRVA 198 L++ A P +++DEP +GLD +G L +++ A G VLV+ H +D + VA Sbjct: 110 ILSVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLI---ARLGVPVLVAGHDIDFAAAVA 166 Query: 199 DHIGIIHRGRMVAQFSGKELDTQVTRSLVITTVDDGRALAVLRSAGYEAVLDHG-RIVCT 257 I+ GR+ + SG V+ + + L + +A L+ G +CT Sbjct: 167 GWAVILRDGRV--RVSG-------DMERVLRMLPEETGLGLEPGPAVKAALERGLDPLCT 217 Query: 258 GEAALG 263 LG Sbjct: 218 ARCVLG 223 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 58.2 bits (139), Expect = 3e-10 Identities = 51/220 (23%), Positives = 101/220 (45%), Gaps = 22/220 (10%) Query: 13 RFRDVWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLFGKPL-GAD 71 RF V A+ ++ + + G I G +G NGAGKT+ + ++ G+ +P G V G+ + G Sbjct: 10 RFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDITGLK 69 Query: 72 P--SVFQRVGALVEQAAAYPLLTAEENL--------RHAALLKGLDPSRA---------- 111 P + + + + + +T EN+ R + L K L RA Sbjct: 70 PHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWEVEARER 129 Query: 112 VPEVMEELGLLPYARVQARHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVEL- 170 V++ L L + L G ++++ LA A +P ++L+DEP GL ++ Sbjct: 130 AEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEKEDIV 189 Query: 171 RAMLRKRADEGAAVLVSSHMLDELSRVADHIGIIHRGRMV 210 RA++ +++ H ++ ++ V D + ++ G+++ Sbjct: 190 RAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVI 229 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 57.8 bits (138), Expect = 3e-10 Identities = 57/206 (27%), Positives = 91/206 (44%), Gaps = 13/206 (6%) Query: 22 DLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRPTTGSVSLFGKPLG-ADPSVFQRVGA 80 D+ L + G I VG NGAGK+T ++ + G G V + P ++G Sbjct: 23 DVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLFENTDVTHMPPHDRAKIGM 82 Query: 81 --LVEQAAAYPLLTAEENLRHAALLKGLD-PSRAVPEVMEEL-GLLPYARVQ----ARHL 132 + + + LT ENLR L G D P + +EE+ + P + + A L Sbjct: 83 TFIFQLENIFRELTVYENLR----LAGYDLPEDVFRDRLEEVFSMFPRLKERLGQKAGTL 138 Query: 133 SQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRKRADEGAAVLVSSHMLD 192 S G RQ LA+A + P++ L+DEP GL P E+ + +R EG V++ + Sbjct: 139 SGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVRILNKEGYTVVLVEQNVK 198 Query: 193 ELSRVADHIGIIHRGRMVAQFSGKEL 218 + D ++ GR+ +EL Sbjct: 199 ASLEIGDKGVLVVNGRIAFDGPAEEL 224 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 55.1 bits (131), Expect = 2e-09 Identities = 49/212 (23%), Positives = 102/212 (48%), Gaps = 19/212 (8%) Query: 17 VWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRP----TTGSVSLFGKPLGADP 72 V AV + L G + G G +G+GK+T +LG++ P G + + G + + Sbjct: 22 VKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTSMS 81 Query: 73 SV-------FQRVGALVEQA--AAYPLLTAEENLRHAALL-KGLDPSRA---VPEVMEEL 119 +++V + + A P+ T + + +G+ A V E++E + Sbjct: 82 EAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELLESV 141 Query: 120 GLLPYARVQARH-LSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAMLRKRA 178 GL + H LS G +QR+ +A A +P +++ DEP LD ++ +L+K A Sbjct: 142 GLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLKKLA 201 Query: 179 -DEGAAVLVSSHMLDELSRVADHIGIIHRGRM 209 ++ ++++ +H L ++ +A+ + I++ G++ Sbjct: 202 WEKNLSIILITHDLSVIAELAETVMIMYGGKI 233 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 53.1 bits (126), Expect = 8e-09 Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 30/230 (13%) Query: 17 VWAVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLLGMIRP----TTGSVSLFGKP----- 67 V A+ D+ + G + VG G GK+ T R L +I P G + + +P Sbjct: 26 VKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGRIVEGKIYYYPEPGRRVD 85 Query: 68 -LGADPSVFQRVG----ALVEQ---AAAYPLLTAEENLRHAALLKGLDPS------RAVP 113 + D +R+ A + Q AA PL T + L G S RAV Sbjct: 86 IMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETMLAHGRVRSLREGVRRAVG 145 Query: 114 EVMEELGLLPYARVQA--RHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLD---PAGIV 168 + L P RV++ LS G +QR + + P+LL+ DEP LD A I+ Sbjct: 146 VLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLIADEPTTALDVTIQAQIM 205 Query: 169 ELRAMLRKRADEGAAVLVSSHMLDELSRVADHIGIIHRGRMVAQFSGKEL 218 +L L++ + G +L+ +H L ++ D + +++ G +V + EL Sbjct: 206 DLLTQLKR--EHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEEAPVDEL 253 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 48.1 bits (113), Expect = 3e-07 Identities = 47/213 (22%), Positives = 95/213 (44%), Gaps = 21/213 (9%) Query: 19 AVRDLDLVLEPGTIFGFVGLNGAGKTTTIRMLL-----------GMIRPTTGSVSLFGKP 67 A+ ++L + G I VG +G GK+T R + G I GS + Sbjct: 24 ALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNTVDLV 83 Query: 68 LGADPSVFQRVGALVEQ------AAAYPLLTAEENLRHAALLKGLDPSRAVPEVMEELGL 121 ++ + + G +V AA P+ ++ + + + E++++L + Sbjct: 84 RLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDHVSGEKRRVEKIAQEILKKLMM 143 Query: 122 -LPYARVQA--RHLSQGNRQRLALAKAFLGDPRLLLLDEPGNGLDPAGIVELRAML-RKR 177 P+ ++ LS G +QR+ +A + + PR+++ DEP LD ++ ML R R Sbjct: 144 PAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKMLSRLR 203 Query: 178 ADEGAAVLVSSHMLDELSRVADHIGIIHRGRMV 210 + +++ +H L + +AD I +++ G +V Sbjct: 204 EELETTIILITHNLAVAAEIADRIAVMYAGHVV 236 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 324,878 Number of Sequences: 1700 Number of extensions: 15376 Number of successful extensions: 173 Number of sequences better than 1.0e-04: 41 Number of HSP's better than 0.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 82 Number of HSP's gapped (non-prelim): 47 length of query: 303 length of database: 492,079 effective HSP length: 76 effective length of query: 227 effective length of database: 362,879 effective search space: 82373533 effective search space used: 82373533 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719559|ref|YP_003875091.1| hypothetical protein STHERM_c18830 [Spirochaeta thermophila DSM 6192] (231 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 235,473 Number of Sequences: 1700 Number of extensions: 10141 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 231 length of database: 492,079 effective HSP length: 74 effective length of query: 157 effective length of database: 366,279 effective search space: 57505803 effective search space used: 57505803 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719560|ref|YP_003875092.1| hypothetical protein STHERM_c18840 [Spirochaeta thermophila DSM 6192] (413 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.143 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 467,376 Number of Sequences: 1700 Number of extensions: 22088 Number of successful extensions: 79 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79 Number of HSP's gapped (non-prelim): 0 length of query: 413 length of database: 492,079 effective HSP length: 79 effective length of query: 334 effective length of database: 357,779 effective search space: 119498186 effective search space used: 119498186 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719561|ref|YP_003875093.1| DNA protection during starvation protein [Spirochaeta thermophila DSM 6192] (150 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 131,893 Number of Sequences: 1700 Number of extensions: 4605 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 150 length of database: 492,079 effective HSP length: 69 effective length of query: 81 effective length of database: 374,779 effective search space: 30357099 effective search space used: 30357099 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719562|ref|YP_003875094.1| sugar ABC transporter substrate-binding protein [Spirochaeta thermophila DSM 6192] (545 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 583,097 Number of Sequences: 1700 Number of extensions: 26944 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 545 length of database: 492,079 effective HSP length: 81 effective length of query: 464 effective length of database: 354,379 effective search space: 164431856 effective search space used: 164431856 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719563|ref|YP_003875095.1| transporter [Spirochaeta thermophila DSM 6192] (289 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyru... 80 6e-17 gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyru... 59 1e-10 gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease... 49 1e-07 gi|14601088|ref|NP_147614.1| spermidine/putrescine ABC transport... 43 8e-06 >gi|118430851|ref|NP_146916.2| ABC transporter permease [Aeropyrum pernix K1] Length = 286 Score = 80.1 bits (196), Expect = 6e-17 Identities = 69/267 (25%), Positives = 131/267 (49%), Gaps = 23/267 (8%) Query: 23 VVCLLPMVNLLARSLSD-SEYLVRGEVGLWPKGLNFEAYRLVLEDTKYTWA--FVWTVII 79 +V LLP + L S+ E +V+G + + Y Y+ + ++ ++I+ Sbjct: 27 LVWLLPFIGLFMVSVRPYGEVIVKGWWNIVDATFTMDNYIKAWSYDPYSVSGGYINSLIV 86 Query: 80 TAAGTMLSLFMTAICAYPLTYDH--LKGRSVIMSLILFTMYFNAGTIPMYLLLKDIGLLN 137 T++ + + AY + LK +++++L + +P++LLLK++GL+N Sbjct: 87 ALPATVIPVAAASFAAYGFSRFSFPLKSYLFLVTILLMALPQQIVVVPLFLLLKNLGLIN 146 Query: 138 -HPLVLIVPYCLSVFNIIL-MRNYFYTIPTSLRESAEMDGANPVRILVSIYLPLSLPIIA 195 P +++V + II M+N+F +P + E+A +DGA+ RI I LP+SLP I Sbjct: 147 TFPGIILVHSAWGMAWIIFFMKNFFDILPREVEEAARVDGASDFRIFYKIVLPMSLPGIL 206 Query: 196 TLALFYAVGRWNTYSDALMFMNKREFYPISLLLYFLIQSVSEVE-TYSLEGNIPLGLSES 254 + ++ W+++ L+F+ I + + Q ++ ++ TY ++ Sbjct: 207 SASVLQFTWVWSSFFFELIFL-------IDPSKWVITQRIANMKGTYLVDW--------G 251 Query: 255 LKAAAVMFATVPILLVYPWLQRYFIQG 281 L AA +FA L VY LQRY+I+G Sbjct: 252 LIAAGSVFAMAVPLAVYMLLQRYYIRG 278 >gi|118431796|ref|NP_148490.2| ABC transporter permease [Aeropyrum pernix K1] Length = 302 Score = 58.9 bits (141), Expect = 1e-10 Identities = 70/270 (25%), Positives = 120/270 (44%), Gaps = 35/270 (12%) Query: 28 PMVNLLARSLSDSEYLVRGEVGLWPKGLNFEAYRLVLEDTKYTWAFVWTVIITAAGTMLS 87 P++ +L + +RG++ GL R V+E T T V +TA T++S Sbjct: 53 PLLTDFQPTLDNWIMFLRGQITYATGGLE----RNVVEMTLVTLTVAVGVALTA--TLVS 106 Query: 88 LFMTAICAYPLTYDHLKGRSVIMSLILFTMYFN--AGTIPMYLLLKDIGLLNHPL----- 140 L + AY ++ KGR V + ++ F A I +Y++ + IG + L Sbjct: 107 L----LAAYSISRMEFKGRGVFTAGLIMLHAFPGVALIIGVYMIFRIIGDVLGVLGEEFY 162 Query: 141 ----VLIVPYCLSV-FNIILMRNYFYTIPTSLRESAEMDGANPVRILVSIYLPLSLPIIA 195 +++ L V I L + +F IP L SA +DGA+ VR+ SI +PL P IA Sbjct: 163 AIAYIILARAALEVPMAIWLFKGFFDKIPWELEWSALVDGASRVRVWWSILVPLVKPGIA 222 Query: 196 TLALFYAVGRWNTYSDALMFMNKREFYPISLLLYFLIQSVSEVETYSLEGNIPLGLSESL 255 + +F + W + +F+ + I L F+ + V+ E Y L ++ Sbjct: 223 AVLIFTFLAGWEEFIYFYVFLKP---FGIDSLPTFIEEIVAAAENYQL----------TI 269 Query: 256 KAAAVMFATVPILLVYPWLQRYFIQGVTLG 285 AAA F +P ++ + QR ++ + G Sbjct: 270 IAAAGTFYLLPTIVFFVLTQRLLLEAYSGG 299 >gi|118430964|ref|NP_147101.2| molybdate ABC transporter permease ModB [Aeropyrum pernix K1] Length = 261 Score = 48.9 bits (115), Expect = 1e-07 Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 14/138 (10%) Query: 111 SLILFTMYFNAGTIPMYLLLKDIGLLNHPLVLIVPYCL--SVFNIILMRNYFYTIPTSLR 168 +LILFT Y P+ + + +GL P +I+ L + + ++ F +P L Sbjct: 103 ALILFTRY-----PPLNSISETLGLFFSPKAVILAQLLVTTPIAVSMLTGVFSMVPRELE 157 Query: 169 ESAEMDGANPVRILVSIYLPLSLP-IIATLAL--FYAVGRWN-TYSDALMFMNKREFYPI 224 E+AE GA ++IL+ I LPLSLP I++ LA+ F A+G + T A + E P+ Sbjct: 158 EAAEAYGAGRLQILIRIVLPLSLPGILSALAVTFFRALGEFGATLVLAGNIPGRTETLPL 217 Query: 225 SLLLYFLIQSVSEVETYS 242 +L + S+++VET S Sbjct: 218 AL---YNAISLADVETAS 232 >gi|14601088|ref|NP_147614.1| spermidine/putrescine ABC transporter permease [Aeropyrum pernix K1] Length = 267 Score = 43.1 bits (100), Expect = 8e-06 Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 19/186 (10%) Query: 16 AVSILVIVVCLLPMVNLLARSLSDSEYLVRGEVGLWPKGLNFEAYRLVLEDTKYTWAFVW 75 A + ++ + LP+ L +SL+ S Y +G+W +GL + Y +++ D + A Sbjct: 9 AATYAILAIMYLPIALLALQSLNSSPY-----IGVW-EGLTLKWYGMMMGDERLHAAAYN 62 Query: 76 TVIITAAGTMLSLFMTAICAYPLTYDHLKGR--SVIMSLILFTMYFNAGTIPMYLLLKDI 133 ++ I AA + S + + G +++ ++ A + ++L D+ Sbjct: 63 SLAIAAASAVSSTLLGVAAGLAVRRHGKVGLVDAIMYPPLVLPEIAEAAALLLFLTALDV 122 Query: 134 GLLNHPLVLIVPYCLSVFNIILMRNYFYTIP-----TSLRESAEMDGANPVRILVSIYLP 188 L +V+ + FNI + Y P +SL ++A GA P R LV+I +P Sbjct: 123 DLGLKTVVI----GHTAFNIAYV--YVVAAPALQRSSSLEDAARTLGATPARTLVTITIP 176 Query: 189 LSLPII 194 L+ P I Sbjct: 177 LAAPAI 182 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.142 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 266,626 Number of Sequences: 1700 Number of extensions: 10769 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 5 length of query: 289 length of database: 492,079 effective HSP length: 76 effective length of query: 213 effective length of database: 362,879 effective search space: 77293227 effective search space used: 77293227 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719564|ref|YP_003875096.1| transporter [Spirochaeta thermophila DSM 6192] (369 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyru... 65 3e-12 gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum... 53 1e-08 >gi|118430850|ref|NP_146915.2| ABC transporter permease [Aeropyrum pernix K1] Length = 298 Score = 65.1 bits (157), Expect = 3e-12 Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 6/210 (2%) Query: 145 LMLNSLDLLFGFPAPIILALILNELPYHRF-KRVTQTIAYMPHFLSWVIIAGMALQLLAP 203 L+ N + + P L L L L + F + +TI ++ + V+ + + Sbjct: 77 LIHNIIWMALHIPLVTFLGLFLAYLLKYTFGSSIVKTIVFIGMVIPMVVGGLIVRFMFDE 136 Query: 204 NTGLLNIWLKKLGAGPIP--FLNDPNYWVGTYVVLGIWQSVGWNTIIYLAAMTSINPELY 261 G++ + K LG + + N P + + ++ +W G++ +Y AA+ SI Sbjct: 137 YVGVVPLVFKALGVDFLAKTWTNYPQLSLLSLILGSVWLWTGFSLTVYSAALGSIPSSFI 196 Query: 262 EAAAIDGAGRLRRIWHVTLPGIRP-TIVILLILSLGHLMGSYFDRPYALRNPLVKDVSDV 320 EAA IDGAG W + P +RP TI+++++ L L FD Y S+V Sbjct: 197 EAARIDGAGHWHIFWKIVFPLVRPATIIVVVMTMLWDL--KIFDIVYVATLGGPGGSSNV 254 Query: 321 IAIFVYNYGIRGLQFSLTTAVGLFQSVINV 350 +A+ +Y Y R L + +AV + +++ + Sbjct: 255 LALVMYQYMARALDYQAASAVAVILTLLTL 284 >gi|14601528|ref|NP_148068.1| ABC transporter permease [Aeropyrum pernix K1] Length = 288 Score = 53.1 bits (126), Expect = 1e-08 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 11/164 (6%) Query: 136 DFLLALRNTLMLNSLDLLFGFPAPIILALILNELPYHRFKRVTQTI--AYMPHFLSWVII 193 +F AL+ T +L L + P +LAL L + RF+ I MP LS + Sbjct: 62 EFWSALKYTFLLAILVI----PTETLLALTAVILLFKRFRGRDAVIYVLVMPLALS-DLA 116 Query: 194 AGMALQLLAPNTGLLNIWLKKLG--AGPIPFLNDPNYWVGTYVVL--GIWQSVGWNTIIY 249 AG+ + G LN L +G + PI F N W+ V +W+S +I Sbjct: 117 AGLIWYSMLTGKGFLNKLLLNMGLISDPIIFFGYENRWLTFLAVYLAEVWRSTAIVFVIL 176 Query: 250 LAAMTSINPELYEAAAIDGAGRLRRIWHVTLPGIRPTIVILLIL 293 A IN E++EAA + GA ++ H+ +P I+P++ L++ Sbjct: 177 FAGAQLINKEVFEAAEVFGASFYVKLRHILIPMIKPSLQAALLI 220 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.144 0.463 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 349,025 Number of Sequences: 1700 Number of extensions: 14781 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 2 length of query: 369 length of database: 492,079 effective HSP length: 78 effective length of query: 291 effective length of database: 359,479 effective search space: 104608389 effective search space used: 104608389 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719565|ref|YP_003875097.1| carbohydrate binding family 6 [Spirochaeta thermophila DSM 6192] (1141 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,226,466 Number of Sequences: 1700 Number of extensions: 57379 Number of successful extensions: 133 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133 Number of HSP's gapped (non-prelim): 0 length of query: 1141 length of database: 492,079 effective HSP length: 87 effective length of query: 1054 effective length of database: 344,179 effective search space: 362764666 effective search space used: 362764666 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719566|ref|YP_003875098.1| hypothetical protein STHERM_c18900 [Spirochaeta thermophila DSM 6192] (474 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 367,903 Number of Sequences: 1700 Number of extensions: 13342 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 474 length of database: 492,079 effective HSP length: 80 effective length of query: 394 effective length of database: 356,079 effective search space: 140295126 effective search space used: 140295126 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719567|ref|YP_003875099.1| hypothetical protein STHERM_c18910 [Spirochaeta thermophila DSM 6192] (634 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431111|ref|NP_147338.2| 3-deoxy-7-phosphoheptulonate synth... 274 5e-75 >gi|118431111|ref|NP_147338.2| 3-deoxy-7-phosphoheptulonate synthase [Aeropyrum pernix K1] Length = 270 Score = 274 bits (700), Expect = 5e-75 Identities = 146/261 (55%), Positives = 182/261 (69%), Gaps = 1/261 (0%) Query: 66 KPYKLASREFKKTDTVVTLRNGVRIGGNRITVIAGPCAVEGRDQILEAAHRVKESGAVIL 125 K KLA + ++ +TVV + GVRIGG VIAGPC+VE +Q+ EAA VKE+GA +L Sbjct: 5 KGVKLALKSEERRETVVEVE-GVRIGGGSKAVIAGPCSVESWEQVREAALAVKEAGAHML 63 Query: 126 RGGAFKPRTSPYSFQGLGEKGLEYLKEASEETGLPVVSEVVATEHVDLLCRYVDVLQIGA 185 RGGAFKPRTSPYSFQGLG +GL+ L+ A +E GLPVV+EV+ HV+ + RY D+LQIGA Sbjct: 64 RGGAFKPRTSPYSFQGLGLEGLKLLRRAGDEAGLPVVTEVLDPRHVETVSRYADMLQIGA 123 Query: 186 RNMQNFELLKRVGATGKPVLLKRGLAATIEEWLMAAEYLLAHGAEDVILCERGIRTFETY 245 RNMQNF LL+ VG +GKPVLLKRG T+EE L AAEY+L G V+L ERGIRTFE Sbjct: 124 RNMQNFPLLREVGRSGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPS 183 Query: 246 TRNTLDLSAIPVVKKLSHLPVIVDPSHATGIRTKXXXXXXXXXXXXXXXXXVEVHVDPDR 305 TR TLD++A+ V+K+ +HLPVIVDPSH G R+ VEVH +P+ Sbjct: 184 TRFTLDVAAVAVLKEATHLPVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHPNPEE 243 Query: 306 ALSDGAQSLYPEQFEKLMRDL 326 ALSD Q L P +F +LM +L Sbjct: 244 ALSDAKQQLTPGEFARLMGEL 264 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 665,071 Number of Sequences: 1700 Number of extensions: 31317 Number of successful extensions: 108 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107 Number of HSP's gapped (non-prelim): 1 length of query: 634 length of database: 492,079 effective HSP length: 83 effective length of query: 551 effective length of database: 350,979 effective search space: 193389429 effective search space used: 193389429 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719568|ref|YP_003875100.1| hypothetical protein STHERM_c18920 [Spirochaeta thermophila DSM 6192] (248 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 267,770 Number of Sequences: 1700 Number of extensions: 12031 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 248 length of database: 492,079 effective HSP length: 75 effective length of query: 173 effective length of database: 364,579 effective search space: 63072167 effective search space used: 63072167 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719569|ref|YP_003875101.1| endo-1,4-beta-xylanase B precursor [Spirochaeta thermophila DSM 6192] (347 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 353,388 Number of Sequences: 1700 Number of extensions: 15285 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 347 length of database: 492,079 effective HSP length: 78 effective length of query: 269 effective length of database: 359,479 effective search space: 96699851 effective search space used: 96699851 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719570|ref|YP_003875102.1| hypothetical protein STHERM_c18940 [Spirochaeta thermophila DSM 6192] (123 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 129,455 Number of Sequences: 1700 Number of extensions: 5477 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 123 length of database: 492,079 effective HSP length: 67 effective length of query: 56 effective length of database: 378,179 effective search space: 21178024 effective search space used: 21178024 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719571|ref|YP_003875103.1| family 5 extracellular solute-binding protein [Spirochaeta thermophila DSM 6192] (542 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601949|ref|NP_148494.1| dipeptide ABC transporter dipeptide... 85 4e-18 gi|118430987|ref|NP_147134.2| ABC transporter substrate-binding ... 80 2e-16 >gi|14601949|ref|NP_148494.1| dipeptide ABC transporter dipeptide-binding protein DppA [Aeropyrum pernix K1] Length = 515 Score = 85.1 bits (209), Expect = 4e-18 Identities = 107/441 (24%), Positives = 178/441 (40%), Gaps = 44/441 (9%) Query: 60 GLLTYHPSTLAPMPGVARKWEWNKDYTRITFYLRENARFSDGTPITA-AHFRESWLYLIA 118 GL+TY +P +A +WE + FYLR++A+F DGTP A R + Sbjct: 67 GLVTYDQQGNI-VPYLAERWESQEGGKVWIFYLRQDAKFPDGTPCDADVVVRSIKRVMTI 125 Query: 119 HNLPYASLLDVITGARALREGKGSPEKVGIVVKDPHTLVLTLTNPAPYILKFLPHTAFAP 178 P + + + AL D T+ TL P Y L + + P Sbjct: 126 QGDPSWLVTEFVENVEAL---------------DQWTVKFTLKQPTGYFLAVVATPPYYP 170 Query: 179 TASGMDLSRTWAPSRDLVGNGPYRILKVEKDR-LVLEKNPQYWDQESVKIPRLVITSYDD 237 + AP G GPY I + +D+ L L+ NP ++ +E K ++I Y+ Sbjct: 171 VHPNYPEDQP-APDATWGGCGPYMIDEFVRDQYLRLKPNPNFFGEEP-KNDGVIIRFYEG 228 Query: 238 PERVMRLFNGDALHWVADGYDLSLLNNRKALVLN----PLFATTFYFFNASTPPFDDPRV 293 E + + + S L + ++ N P + S PP D+ V Sbjct: 229 SEDLRSALEAGEIDVAWRTLNPSDLEDLRSKGYNIKEVPGLFIRYLVLRVSQPPLDNVAV 288 Query: 294 RRALALLVPWDELRSSDRYF----FPTSHLVP-----QIPGYPEVEGITEPDEKTALSLL 344 R+ALA + D DR F P +VP P + E G P+ A LL Sbjct: 289 RQALAAAI--DRQDIVDRVFRGTMEPLYSMVPSGMWGHYPAFKEKYG-EGPNIDLARQLL 345 Query: 345 QEAGFPEGKGLPVITCYAMEG-GQEE---IDILTRLWRERLGLQVQVKAFTSMQAYFNAM 400 +AG+ E L V Y E G E ++ W + V++K+ + Y + + Sbjct: 346 SQAGYSESNKLQVELWYTPEHYGDTEAALAAVIKEQWEATGMISVEIKS-SEWGTYVDQL 404 Query: 401 EQDPSFHLASITWLGDFPDPLTFLS--LWESGGSLNYARFSSPEYDELLREANTTQGKER 458 ++ + W D+ DP FL+ L + S +++P+ D+LLR+A T+ Sbjct: 405 SSG-QMMISLLGWYPDYLDPDNFLTPFLLSTANSWTGTGYANPQVDDLLRKAMTSSDMNE 463 Query: 459 YSLLARAEEFLISESAVILPI 479 + L + + +++E A +P+ Sbjct: 464 RAQLYKQVQEILAEEAPFIPL 484 >gi|118430987|ref|NP_147134.2| ABC transporter substrate-binding protein precursor [Aeropyrum pernix K1] Length = 799 Score = 79.7 bits (195), Expect = 2e-16 Identities = 125/519 (24%), Positives = 209/519 (40%), Gaps = 69/519 (13%) Query: 37 PSNLNPQRISTTNEAQIALALFEGLLTYHPSTLAPMPGVARKWEWNKDYTRITFYLRENA 96 P L+P T A+I ++E L+ + P +A +WE + T FY+R+ Sbjct: 282 PQGLDPAFAHDTASAEIIDNVYERLVWTTKNFKEIKPWLAERWEIKDNGTTYIFYIRKGV 341 Query: 97 RFSDGTPITAAHFRESWLYLIAHNLPYASLLDVITGARALREGKGSPEKVGIVVK--DPH 154 +F +G +TA S+ L+ +LP + + + + P+++ ++ D + Sbjct: 342 KFHNGEELTAYDVEYSFKRLLVLDLPQGHVRQI----KPFLIDEWDPDQIDQAIRAIDKY 397 Query: 155 TLVLTLTNP-APYILKFLPHTAFAPTASGMDLSR-TWAPS------------------RD 194 T+V L P AP++ AF + W PS R+ Sbjct: 398 TVVFKLKKPFAPFLRILASDYAFVIINKKWAIEHGDWDPSLPKSEWSKFRGKINDYIMRN 457 Query: 195 LVGNGPYRILK-VEKDRLVLEKNPQYWDQESVKIPRLVITSYDD-PERVMRLFNGDA-LH 251 +G GPY++++ V R+VLE+ YW Q R+VI + R++ L NGD + Sbjct: 458 PMGTGPYKMVEWVPGQRIVLERFEDYW-QGPAPTKRVVIMFVPELSTRLLMLKNGDVDIA 516 Query: 252 WVADGYDLSLLNNRKALVLNPLFATTF-----YFFNASTPP---------FDDPRVRRAL 297 + Y S + N + + AT + FN S P F D VR+A Sbjct: 517 DIPVSYK-SQVENVPGITIFTGAATNVVEFIQFNFNISKIPEGDTIWPDFFTDVNVRKAF 575 Query: 298 ALLVPWDEL---RSSDRYFFPTSHLVPQIPGYPEVEGITEPDEKTALSLLQEAGFPEGKG 354 A P++E + + P PGY E EK A + G + Sbjct: 576 AYAFPYEEFIEKAYQGLAIRARACVPPGWPGYVEAYNYEYDPEKAAEYFKKAWGGRVWEE 635 Query: 355 LPVITCYAMEGGQEEIDILTRLWRERL-----GLQVQVKAFTSMQAYFNAMEQDPSFHLA 409 VIT + G E+ I L E L +++V+A Y ME A Sbjct: 636 GFVITAF-YNAGNEQRRIALELLAESLQKINPKFKLRVQAL-DWPVYLEKMENFELPLFA 693 Query: 410 SITWLGDFPDP-------LTFLSLWESGGSLNYARFSSPEYDELLREAN-TTQGKERYSL 461 W+ ++ DP L SL++S G +S+P+ DEL+++A T ++R L Sbjct: 694 IGDWI-NYLDPHIAVEQQLASYSLFQSLG----GGYSNPKVDELIKQAALETDPQKREEL 748 Query: 462 LARAEEFLISESAVILPIAHSPALNLVDLDWIGGWYPNP 500 + + + E + + P + +V DWI G++ NP Sbjct: 749 YKQIQLIALREDVPQIYTVY-PTVFVVMRDWIQGYFYNP 786 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 598,793 Number of Sequences: 1700 Number of extensions: 28480 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 3 length of query: 542 length of database: 492,079 effective HSP length: 81 effective length of query: 461 effective length of database: 354,379 effective search space: 163368719 effective search space used: 163368719 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719572|ref|YP_003875104.1| hypothetical protein STHERM_c18960 [Spirochaeta thermophila DSM 6192] (228 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.149 0.489 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 203,487 Number of Sequences: 1700 Number of extensions: 7551 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 228 length of database: 492,079 effective HSP length: 74 effective length of query: 154 effective length of database: 366,279 effective search space: 56406966 effective search space used: 56406966 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719573|ref|YP_003875105.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (217 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 146,565 Number of Sequences: 1700 Number of extensions: 5510 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 217 length of database: 492,079 effective HSP length: 73 effective length of query: 144 effective length of database: 367,979 effective search space: 52988976 effective search space used: 52988976 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719574|ref|YP_003875106.1| 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Spirochaeta thermophila DSM 6192] (224 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 265,284 Number of Sequences: 1700 Number of extensions: 13204 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 224 length of database: 492,079 effective HSP length: 74 effective length of query: 150 effective length of database: 366,279 effective search space: 54941850 effective search space used: 54941850 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719575|ref|YP_003875107.1| 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Spirochaeta thermophila DSM 6192] (158 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 169,873 Number of Sequences: 1700 Number of extensions: 7351 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 158 length of database: 492,079 effective HSP length: 70 effective length of query: 88 effective length of database: 373,079 effective search space: 32830952 effective search space used: 32830952 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719576|ref|YP_003875108.1| hypothetical protein STHERM_c19000 [Spirochaeta thermophila DSM 6192] (235 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 215,822 Number of Sequences: 1700 Number of extensions: 8603 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 0 length of query: 235 length of database: 492,079 effective HSP length: 74 effective length of query: 161 effective length of database: 366,279 effective search space: 58970919 effective search space used: 58970919 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719577|ref|YP_003875109.1| elongation factor G [Spirochaeta thermophila DSM 6192] (698 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601403|ref|NP_147939.1| elongation factor EF-2 [Aeropyrum p... 220 8e-59 gi|14601666|ref|NP_148207.1| elongation factor 1-alpha [Aeropyru... 49 4e-07 >gi|14601403|ref|NP_147939.1| elongation factor EF-2 [Aeropyrum pernix K1] Length = 736 Score = 220 bits (561), Expect = 8e-59 Identities = 201/744 (27%), Positives = 338/744 (45%), Gaps = 102/744 (13%) Query: 8 MRNIGISAHIDSGKTTLTERILYYCNRIHQIHEVKGKDGAGATMDYMELEKERGITITSA 67 +RNIGI AH+D GKTT ++ +L I + G +DY+ +EK+RGIT+ SA Sbjct: 21 IRNIGIIAHVDHGKTTTSDSLLAAAGIISERIA-----GEALVLDYLNVEKQRGITVKSA 75 Query: 68 ATHV----TWKDHMINIIDTPGHVDFTIEVERALRXXXXXXXXXXXXXXXQSQTLTVDRQ 123 + K ++IN+IDTPGHVDF+ +V R+LR +QT TV RQ Sbjct: 76 NVSLYHEYEGKPYVINLIDTPGHVDFSGKVTRSLRVLDGAIVVVDAVEGVMTQTETVIRQ 135 Query: 124 LKRYRVPRLAFINKCDR----VGANPYKVRDQIEEKLGLDAVLVQIPIGLEDQHKGVVDL 179 RV + FINK DR + P K++ + E + L+ + E + K +D Sbjct: 136 ALEERVRPILFINKVDRLIKELKLPPEKIQQRFVEIIKEVNNLIDLYAEPEFRKKWKLDP 195 Query: 180 ITMKALYFEGANGEHVVEAEIPGELVAEAEAKREEMLDALSMYSDDLAEAILEGEDIPED 239 + F A + G V + + K + + Y EA+ E Sbjct: 196 -NAGMVAFGSAKDKW-------GISVPQVKKKGITFREIIQAYEKG-KEAVAE------- 239 Query: 240 LIHDAIRKGTLSLKLCPIFMGAAYKNKGVQPLLDGVVRYLPSPYDIRNVAL------DLS 293 LS K+ P+ + LLD V++++P+P + + + D++ Sbjct: 240 ----------LSKKM-PLH----------ETLLDMVIKFVPNPREAQRYRIPKIWKGDIN 278 Query: 294 NDEAEVELSSVDDAPTVAYAFKLEDGQYGQLTYIRIYQGTVKKGMELLNTRSRKKFKIGR 353 ++ + L++ D P V + + + G + R++ GT++ G E+ + KK ++ + Sbjct: 279 SEIGQAMLNADPDGPLVFFINDVRIEKAGLVATGRVFSGTLRSGEEVYLLNAGKKSRLLQ 338 Query: 354 LVRMHANHMEDISEARCGDIVALFGIDCV-SGDTFCDPSLNYAMTSM------YVPEPVI 406 + E E G+I A+ G + V +G+T SL Y + YV EPV+ Sbjct: 339 VSIYMGPFREVTKEIPAGNIGAVMGFEDVRAGETVV--SLGYEENAAPFESLRYVSEPVV 396 Query: 407 SLAIKPKDKKSEDAVAKALNRFAKEDPTFRVYIDPETNETIIQGMGELHLDVYIERMRRE 466 ++A++P + + +AL + EDP V I+ ET E ++ GMG LHL++ + +R + Sbjct: 397 TIAVEPVKIQDLPKMIEALRKLTIEDPNLVVKINEETGEYLLSGMGPLHLEIALTMLREK 456 Query: 467 YKADVETGMPQVAYRETITKRA-----DFDYLHKK----------QTGGSGQYGRVAGYI 511 + +V+ P V YRET+ +++ H K +T Q G V Sbjct: 457 FGVEVKASPPIVVYRETVRQQSRVFEGKSPNKHNKLYISVEPLNEETITLIQNGAVTEDQ 516 Query: 512 EP------IPLEEGKTYE--------------FVDQIKGGVIPNEYIPSCDKGFQKAMEK 551 +P + + G Y FVD+ G E + GF+ A+++ Sbjct: 517 DPKDRARILADKAGWDYNEARKIWAIDENINVFVDKTAGVQYLREVKDTIIAGFRLALKE 576 Query: 552 GSLIGFPVVGVRVVINDGQYH--PVDSSDIAFQLAAIGAFREAYEKADPVILEPIMKVTV 609 G L PV GV+VV++D H PV A A P +LEP+ K+ + Sbjct: 577 GPLAAEPVRGVKVVLHDAVIHEDPVHRGPGQLYPAVRNAIWAGILDGRPTLLEPLQKLDI 636 Query: 610 EGPTEFQGNIFASINQRRGIILSSTEDGMMCRVEAEVPLSEMFGYSTVLRSLTQGKAEFS 669 P E+ NI A + ++RG I++ G+M R+ A +P++E F + LRS T G+A + Sbjct: 637 RAPMEYLSNITAVLTRKRGRIINVETTGVMARIIAAIPVAESFDLAGELRSATAGRAFWG 696 Query: 670 MEFARYAKVPVNIAEELKQKFQKK 693 +EF +A VP + ++L K +++ Sbjct: 697 VEFYGWAPVPDQMLQDLIAKIRQR 720 >gi|14601666|ref|NP_148207.1| elongation factor 1-alpha [Aeropyrum pernix K1] Length = 437 Score = 48.9 bits (115), Expect = 4e-07 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%) Query: 5 QKHMRNIGISAHIDSGKTTLTERILYYCNRIHQ--IHEV------KGKDGAGAT--MDYM 54 +K N+ + H+D GK+TL +LY I + + E+ +GK+ +D M Sbjct: 3 EKPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKM 62 Query: 55 ELEKERGITITSAATHVTWKDHMINIIDTPGHVDF 89 + E+ERGITI K ++ IID PGH DF Sbjct: 63 KEERERGITIDLTFMKFETKKYVFTIIDAPGHRDF 97 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 675,277 Number of Sequences: 1700 Number of extensions: 31169 Number of successful extensions: 104 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 96 Number of HSP's gapped (non-prelim): 4 length of query: 698 length of database: 492,079 effective HSP length: 83 effective length of query: 615 effective length of database: 350,979 effective search space: 215852085 effective search space used: 215852085 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719578|ref|YP_003875110.1| hypothetical protein STHERM_c19020 [Spirochaeta thermophila DSM 6192] (214 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600549|ref|NP_147066.1| hypothetical protein APE_0231 [Aero... 68 2e-13 gi|118431018|ref|NP_147193.2| hypothetical protein APE_0383.1 [A... 65 1e-12 gi|14600551|ref|NP_147068.1| hypothetical protein APE_0234 [Aero... 60 4e-11 gi|118431896|ref|NP_148644.2| hypothetical protein APE_2489.1 [A... 54 2e-09 gi|14600550|ref|NP_147067.1| hypothetical protein APE_0233 [Aero... 52 9e-09 gi|14600580|ref|NP_147097.1| hypothetical protein APE_0267 [Aero... 50 3e-08 gi|118431283|ref|NP_147639.2| hypothetical protein APE_0974.1 [A... 49 1e-07 gi|118431612|ref|NP_148203.2| hypothetical protein APE_1838.1 [A... 47 3e-07 gi|118431195|ref|NP_147492.2| hypothetical protein APE_0785.1 [A... 44 2e-06 >gi|14600549|ref|NP_147066.1| hypothetical protein APE_0231 [Aeropyrum pernix K1] Length = 287 Score = 67.8 bits (164), Expect = 2e-13 Identities = 48/144 (33%), Positives = 80/144 (55%), Gaps = 13/144 (9%) Query: 2 KVAQVMTHNPVTVTPATTLSDAQELMRREKIHRLPVIDEKGRVVGIVSEKDLLYASPSPA 61 +V MT + TV+P TL+ A++LM I RLPV+ E ++ GI++ D+ A Sbjct: 4 RVVSYMTRDVYTVSPDDTLAHARKLMLTHDISRLPVV-EGSKLRGIITITDI-------A 55 Query: 62 TTLNVYEMAQLLSKVRIKEVMRTPVITVTEDTYIEDAARIMVDNNIGGLPVVRGE-KLVG 120 L ++ + + ++EVM V+T+ ++ AA +M+ +NIGG+PVV + L G Sbjct: 56 DALVRKYPSRPANSIYVREVMARDVVTIEGTKSVKTAASLMLKHNIGGVPVVAPDGTLEG 115 Query: 121 IITESDIFKRFVELFGTRKKGVRL 144 IIT +D+ + + E + KGV L Sbjct: 116 IITRTDLTRYYSE----KMKGVNL 135 Score = 45.1 bits (105), Expect = 1e-06 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 11/125 (8%) Query: 3 VAQVMTHNPVTVTPATTLSDAQELMRREKIHRLPVIDEKGRVVGIVSEKDLLYASPSPAT 62 V +VM + VT+ ++ A LM + I +PV+ G + GI++ DL Sbjct: 72 VREVMARDVVTIEGTKSVKTAASLMLKHNIGGVPVVAPDGTLEGIITRTDLTRYYSEKMK 131 Query: 63 TLNVYEMAQLLSKVRIKEVMRTPVITVTEDTYIEDAARIMVDNNIGGLPVVRGEKLVGII 122 +N+ +KE MR + I ++M + G + ++ G KLVG+I Sbjct: 132 GVNL-----------VKEFMREIYAKARREHSIFYVLKLMEIDATGKVLILDGGKLVGVI 180 Query: 123 TESDI 127 T+ DI Sbjct: 181 TKRDI 185 Score = 44.7 bits (104), Expect = 2e-06 Identities = 34/134 (25%), Positives = 70/134 (52%), Gaps = 23/134 (17%) Query: 25 ELMRREKIHRLPVIDEKGRVVGIVSEKDLLYASPSPATTLNVYEMAQ-------LLSKVR 77 +LM + ++ ++D G++VG+++++D+ + AT ++V+ + L+ K R Sbjct: 158 KLMEIDATGKVLILDG-GKLVGVITKRDIAFL----ATPVSVHGAPKYVKIKKPLVYKDR 212 Query: 78 I-----------KEVMRTPVITVTEDTYIEDAARIMVDNNIGGLPVVRGEKLVGIITESD 126 I ++VM ITV + + AA IMV +G LPVV G+ ++G++T+ + Sbjct: 213 IGSTRVYLVPLAEDVMTPNPITVEPEEDLAKAADIMVKEGVGILPVVDGDNVLGVVTKVE 272 Query: 127 IFKRFVELFGTRKK 140 + + V R++ Sbjct: 273 VLQAIVSSRRVRRR 286 Score = 40.4 bits (93), Expect = 3e-05 Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Query: 6 VMTHNPVTVTPATTLSDAQELMRREKIHRLPVIDEKGRVVGIVSEKDLLYA 56 VMT NP+TV P L+ A ++M +E + LPV+D V+G+V++ ++L A Sbjct: 227 VMTPNPITVEPEEDLAKAADIMVKEGVGILPVVD-GDNVLGVVTKVEVLQA 276 >gi|118431018|ref|NP_147193.2| hypothetical protein APE_0383.1 [Aeropyrum pernix K1] Length = 158 Score = 65.1 bits (157), Expect = 1e-12 Identities = 41/130 (31%), Positives = 74/130 (56%), Gaps = 13/130 (10%) Query: 3 VAQVMTHNPVTVTPATTLSDAQELMRREKIHRLPVIDEKGRVVGIVSEKDLLYASPSPAT 62 V +M+ P+T P T++ +A ++M ++ L V++E+ ++GI+++ D++ Sbjct: 12 VRDIMSSPPITTLPMTSVKEAAKIMLENRVGSLIVVNERNTLLGILTKTDII-------- 63 Query: 63 TLNVYEMAQLLSKVRIKEVM-RTPVITVTEDTYIEDAARIMVDNNIGGLPVV--RGEKLV 119 V VR+ ++M R P T+D+ +E AA +M ++NIG LPV+ EK V Sbjct: 64 -REVVAKGLDPESVRVGDIMTRNPYYVYTDDS-VERAASLMGEHNIGHLPVLDPETEKPV 121 Query: 120 GIITESDIFK 129 GI+T++DI K Sbjct: 122 GIVTKTDIVK 131 >gi|14600551|ref|NP_147068.1| hypothetical protein APE_0234 [Aeropyrum pernix K1] Length = 278 Score = 60.1 bits (144), Expect = 4e-11 Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 7/136 (5%) Query: 4 AQVMTHNPVTVTPATTLSDAQELMRREKIHRLPVIDEKGRVVGIVSEKDLLYASPSPATT 63 + MT + V +L+ E+M + +PV+D++ V GIV++ DL+ T Sbjct: 143 SDAMTRDVEYVLEGDSLTRVWEIMVERRYAGVPVVDQRMVVRGIVTQYDLIRKG---YTR 199 Query: 64 LNVYEMAQLLSKVRIKEVMRTPVITVTEDTYIEDAARIMVDNNIGGLPVVRGEK---LVG 120 L + A +VR++ VM VI V E +ED ARIM+D +G +PVV+ L G Sbjct: 200 LGLESEAPP-HRVRVESVMTRSVIYVAESDNLEDVARIMLDRGVGRVPVVKSRDSRVLTG 258 Query: 121 IITESDIFKRFVELFG 136 II D+ + + + G Sbjct: 259 IIDREDLVRLYFKSRG 274 >gi|118431896|ref|NP_148644.2| hypothetical protein APE_2489.1 [Aeropyrum pernix K1] Length = 148 Score = 54.3 bits (129), Expect = 2e-09 Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 11/137 (8%) Query: 1 MKVAQVMTHNPVTVTPATTLSDAQELMRREKIHRLPVIDEKGRVVGIVSEKDLLYASPSP 60 ++ + +M VTV P ++ A +LM I + V+D++GR+ GIV+E+D++Y Sbjct: 13 VRASDIMITEVVTVKPDDPVTRAAKLMVENLIGSVLVVDDEGRLRGIVTERDIVY----- 67 Query: 61 ATTLNVYEMAQLLSKVRIKEVMRTPVITVTEDTYIEDAARIMVDNNIGGLPVVRGEKL-V 119 V A +K R+ E+M I V D + R M + N+ LPVV + V Sbjct: 68 -----VVSEAWDPTKHRVWEIMTENPIVVRPDDDLLTVVRKMSETNVRHLPVVDEKGAPV 122 Query: 120 GIITESDIFKRFVELFG 136 GII+ D+ + + G Sbjct: 123 GIISFRDVLDFLMSVLG 139 >gi|14600550|ref|NP_147067.1| hypothetical protein APE_0233 [Aeropyrum pernix K1] Length = 340 Score = 52.4 bits (124), Expect = 9e-09 Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 4/129 (3%) Query: 2 KVAQVMTHNPVTVTPATTLSDAQELMRREKIHRLPVIDEK-GRVVGIVSEKDLL--YASP 58 KV MT V V P L +A M RL VI G + G+++ KD++ + Sbjct: 203 KVGDYMTATIVGVDPEAPLKEAMRSMVTYGFRRLLVISSSTGEIKGVITAKDIVAYFGEH 262 Query: 59 SPATTLNVYEMAQLLSKVRIKEVMRTPVITVTEDTYIEDAARIMVDNNIGGLPVVRGEKL 118 ++++ +S + + VM V T+ E + DAAR MV+ + L VV G + Sbjct: 263 EAFKNAPSGKVSEAIS-IPVYMVMSPEVYTIDEKASVADAARRMVELGVDSLIVVDGGEA 321 Query: 119 VGIITESDI 127 GIITE D+ Sbjct: 322 KGIITERDV 330 Score = 43.5 bits (101), Expect = 4e-06 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 14/133 (10%) Query: 3 VAQVMTHNPVTVTPATTLSDAQELMRREKIHRLPVIDEKGRVVGIVSEKDLLYASPSPAT 62 VA +M +P+ V+ + L +M E I LPV+ + G + G+++E+++L Sbjct: 141 VATIMNRHPIAVSVSDDLDTILRIMVGEGIGFLPVLYDDGTLHGVITERNIL-------- 192 Query: 63 TLNVYEMAQLLSKVRIKEVMRTPVITVTEDTYIEDAARIMVDNNIGGLPVVRGE--KLVG 120 +A + ++ + M ++ V + +++A R MV L V+ ++ G Sbjct: 193 ----GRIADIPFDKKVGDYMTATIVGVDPEAPLKEAMRSMVTYGFRRLLVISSSTGEIKG 248 Query: 121 IITESDIFKRFVE 133 +IT DI F E Sbjct: 249 VITAKDIVAYFGE 261 >gi|14600580|ref|NP_147097.1| hypothetical protein APE_0267 [Aeropyrum pernix K1] Length = 143 Score = 50.4 bits (119), Expect = 3e-08 Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 11/128 (8%) Query: 1 MKVAQVMTHNPVTVTPATTLSDAQELMRREKIHRLPVIDEKGRVVGIVSEKDLLYASPSP 60 +K VM+ PVT+ ++++A LM + L V+D++G V GI++E+D+ Sbjct: 13 LKAKHVMSTPPVTIEVGRSIAEAARLMAERGVGSLIVVDKQGLVKGILTERDI------- 65 Query: 61 ATTLNVYEMAQLLSKVRIKEVMRTPVITVTEDTYIEDAARIMVDNNIGGLPVVRGE-KLV 119 +N + ++ +++++M I + D +E M D NI +PV+ + + + Sbjct: 66 ---INSLASGKACAEGKVEDIMSRNPIVASPDDDLEIIIEKMRDMNIRHIPVIDEDGRPL 122 Query: 120 GIITESDI 127 G+I+ DI Sbjct: 123 GMISVRDI 130 Score = 46.2 bits (108), Expect = 6e-07 Identities = 21/53 (39%), Positives = 32/53 (60%) Query: 2 KVAQVMTHNPVTVTPATTLSDAQELMRREKIHRLPVIDEKGRVVGIVSEKDLL 54 KV +M+ NP+ +P L E MR I +PVIDE GR +G++S +D++ Sbjct: 79 KVEDIMSRNPIVASPDDDLEIIIEKMRDMNIRHIPVIDEDGRPLGMISVRDII 131 Score = 42.7 bits (99), Expect = 7e-06 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 75 KVRIKEVMRTPVITVTEDTYIEDAARIMVDNNIGGLPVVRGEKLV-GIITESDI 127 +++ K VM TP +T+ I +AAR+M + +G L VV + LV GI+TE DI Sbjct: 12 RLKAKHVMSTPPVTIEVGRSIAEAARLMAERGVGSLIVVDKQGLVKGILTERDI 65 >gi|118431283|ref|NP_147639.2| hypothetical protein APE_0974.1 [Aeropyrum pernix K1] Length = 299 Score = 48.5 bits (114), Expect = 1e-07 Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 12/133 (9%) Query: 1 MKVAQVMTHNPVTVTPATTLSDAQELMRREKIHRLPVIDEKGRVVGIVSEKDLLYASPSP 60 +KV +++ +TV T+ + + + I P++D+K ++G ++ D+ Sbjct: 175 IKVNSLISRKLLTVRHDMTVREVAKFLYSHGIRGAPIVDDKNNIIGFITTTDI------- 227 Query: 61 ATTLNVYEMAQLLSKVRIKEVMRTPVITVTEDTYIEDAARIMVDNNIGGLPVV-RGEKLV 119 ++ + L + + MR V T+ ED I +A R M N +G L V+ + + Sbjct: 228 --SMLIARGEDL--DATVDKYMRKTVFTINEDESIYEAMRYMDFNGVGRLVVIDYAGRPL 283 Query: 120 GIITESDIFKRFV 132 GIIT +DI K + Sbjct: 284 GIITRTDILKALI 296 >gi|118431612|ref|NP_148203.2| hypothetical protein APE_1838.1 [Aeropyrum pernix K1] Length = 135 Score = 47.4 bits (111), Expect = 3e-07 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 15/130 (11%) Query: 11 PVTVTPATTLSDAQELMRREKIHRLPVIDEKGRVVGIVSEKDLLYASPSPATTLNVYEMA 70 P+T P T + + ++M + V+D+ R +GI +E+D++ + Sbjct: 14 PLTAAPQTPVREVVKMMYTQGKSAAVVVDQDNRPIGIFTERDVVRVVATGGDL------- 66 Query: 71 QLLSKVRIKEVMRTPVITVTEDTYIEDAARIMVDNNIGGLPVVRGE-KLVGIITES---D 126 ++E M + V ++ + A +M+++ + LPVV E KLVGIIT S + Sbjct: 67 ----DAPVEEYMTRNPVAVRDNESLTKALALMIEHRVRHLPVVDQEGKLVGIITASSITE 122 Query: 127 IFKRFVELFG 136 + KR+ E G Sbjct: 123 VLKRYKEEVG 132 Score = 43.9 bits (102), Expect = 3e-06 Identities = 19/51 (37%), Positives = 32/51 (62%) Query: 3 VAQVMTHNPVTVTPATTLSDAQELMRREKIHRLPVIDEKGRVVGIVSEKDL 53 V + MT NPV V +L+ A LM ++ LPV+D++G++VGI++ + Sbjct: 70 VEEYMTRNPVAVRDNESLTKALALMIEHRVRHLPVVDQEGKLVGIITASSI 120 >gi|118431195|ref|NP_147492.2| hypothetical protein APE_0785.1 [Aeropyrum pernix K1] Length = 630 Score = 44.3 bits (103), Expect = 2e-06 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 15/133 (11%) Query: 16 PATTLSD----AQELMRREKIHRLPVIDEKGRVVGIVSEKDLLYA--SPSPATTLNVYEM 69 PA T++D A+ +M R + + + V+DE G + G+VS+ +L A P VY+ Sbjct: 330 PAITVNDSIEHARRVMLRYRSNYVLVVDEDGNIKGVVSKWSMLKAIGLRGPLWRRRVYD- 388 Query: 70 AQLLSKVRIKEVMRTPVITVTEDTYIEDAARIMVDNNIGGLPVVRGE--KLVGIITESDI 127 K I VM T + + D IE+ A M + + +V G+ K +G IT+ D+ Sbjct: 389 -----KFFIDFVMDTNIERIKPDASIEEVALKMASSR-SEVVIVEGDDGKPIGFITKDDL 442 Query: 128 FKRFVELFGTRKK 140 + + L R K Sbjct: 443 VEAYKRLMAGRSK 455 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 205,860 Number of Sequences: 1700 Number of extensions: 9074 Number of successful extensions: 92 Number of sequences better than 1.0e-04: 9 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 31 length of query: 214 length of database: 492,079 effective HSP length: 73 effective length of query: 141 effective length of database: 367,979 effective search space: 51885039 effective search space used: 51885039 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719579|ref|YP_003875111.1| transporter [Spirochaeta thermophila DSM 6192] (226 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 220 2e-59 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 197 2e-52 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 175 7e-46 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 129 8e-32 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 127 3e-31 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 117 2e-28 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 105 1e-24 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 103 3e-24 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 103 3e-24 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 100 5e-23 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 99 1e-22 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 98 2e-22 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 96 8e-22 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 96 1e-21 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 93 6e-21 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 93 6e-21 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 88 2e-19 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 82 1e-17 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 80 4e-17 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 79 7e-17 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 78 2e-16 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 76 6e-16 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 76 6e-16 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 76 8e-16 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 73 5e-15 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 73 5e-15 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 72 2e-14 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 71 2e-14 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 70 3e-14 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 69 1e-13 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 69 1e-13 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 65 1e-12 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 64 2e-12 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 63 7e-12 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 61 3e-11 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 60 4e-11 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 60 5e-11 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 52 2e-08 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 50 5e-08 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 47 5e-07 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 220 bits (561), Expect = 2e-59 Identities = 120/224 (53%), Positives = 150/224 (66%), Gaps = 1/224 (0%) Query: 3 YDAIEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSP 62 Y +AL G+S V +GEIV L+G NGAGK+TTL I GL+ G I + D+ GL Sbjct: 16 YGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIWQGRDITGLPA 75 Query: 63 HGIVQRGISQVPEGRRVFANLTVEDNLLMGAYTRKDAKAVRRDMEQVYERFPRLKERYRQ 122 V+ GIS VPEGR +F LTV +NL + A TR+ + + +EQVY FP LK R Q Sbjct: 76 FKRVEEGISHVPEGRGIFPRLTVYENLRVAASTRRAKEHFQDSLEQVYTIFPILKARRSQ 135 Query: 123 LAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNRE-GVTILL 181 LAGTLSGGEQQMLA+ RAL+ RP LL+MDEPS+GLAP L R++ + L E GVTILL Sbjct: 136 LAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLASRLREELGVTILL 195 Query: 182 VEQNAHMALKIAHRGYVLETGNIILSGTVAELLENEEVKRAYLG 225 VEQN ++LK+A RGYV+ETG I+L G EL + +K AYLG Sbjct: 196 VEQNVGLSLKVADRGYVMETGRIVLEGASDELALDPRIKAAYLG 239 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 197 bits (500), Expect = 2e-52 Identities = 110/231 (47%), Positives = 148/231 (64%), Gaps = 9/231 (3%) Query: 1 MNYDAIEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRIT-----FMEE 55 M + I + +S V +G I LIG NGAGK+T L A+ G++ RGR+T E Sbjct: 13 MYHPFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGE 72 Query: 56 DLVGLSPHGIVQRGISQVPEGRRVFANLTVEDNLLMGAYTRKDAKAVRRDMEQVYERFPR 115 D+ P I +RG+ V EGRR+F LT E+NL+ AY A A R D+ V FPR Sbjct: 73 DITNREPDEIARRGVIYVMEGRRIFKELTTEENLVSVAYA---AGASRDDIRSVLSYFPR 129 Query: 116 LKERYRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNR- 174 LKER + AG LSGGEQQMLA+ AL+ RP+LL++DEPS+GLAP + +I++ I+ L+R Sbjct: 130 LKERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHRE 189 Query: 175 EGVTILLVEQNAHMALKIAHRGYVLETGNIILSGTVAELLENEEVKRAYLG 225 EG+TILL EQNA AL+I+ GYV+E G I+L G+ EL +++V YLG Sbjct: 190 EGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEELRLDKDVAEFYLG 240 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 175 bits (444), Expect = 7e-46 Identities = 88/223 (39%), Positives = 136/223 (60%), Gaps = 1/223 (0%) Query: 3 YDAIEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSP 62 Y ++ L +S E+ G I ++G NGAGKST L + G V +GR+ F D+ + P Sbjct: 15 YGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLFENTDVTHMPP 74 Query: 63 HGIVQRGISQVPEGRRVFANLTVEDNLLMGAYTRKDAKAVRRDMEQVYERFPRLKERYRQ 122 H + G++ + + +F LTV +NL + Y + R +E+V+ FPRLKER Q Sbjct: 75 HDRAKIGMTFIFQLENIFRELTVYENLRLAGYDLPE-DVFRDRLEEVFSMFPRLKERLGQ 133 Query: 123 LAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREGVTILLV 182 AGTLSGGE+QMLA+ +M +P++ L+DEP+ GL+P L +E+ S ++ LN+EG T++LV Sbjct: 134 KAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVRILNKEGYTVVLV 193 Query: 183 EQNAHMALKIAHRGYVLETGNIILSGTVAELLENEEVKRAYLG 225 EQN +L+I +G ++ G I G ELL +++ + YLG Sbjct: 194 EQNVKASLEIGDKGVLVVNGRIAFDGPAEELLARKDLAKMYLG 236 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 129 bits (323), Expect = 8e-32 Identities = 84/225 (37%), Positives = 125/225 (55%), Gaps = 4/225 (1%) Query: 3 YDAIEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSP 62 + IEAL G+SF VR GE V LIG NGAGK+T N I G+ RGR+ + D+ G Sbjct: 14 FGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYKGVDITGWPA 73 Query: 63 HGIVQRGISQVPEGRRVFANLTVEDNLLMGAYTRKD--AKAVRRDMEQVYERFPRLKERY 120 + + GI++ + R ANLTV +N+++GA R + +A R ME + L + Sbjct: 74 YRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAMEAI--DMVGLAGKE 131 Query: 121 RQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREGVTIL 180 LA L+ E++ L L RAL ++P LLL+DE + GL P V ++ + ++++ G+TI+ Sbjct: 132 DILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLEISKRGITII 191 Query: 181 LVEQNAHMALKIAHRGYVLETGNIILSGTVAELLENEEVKRAYLG 225 +VE + A R VL G I GT E+ N+ V AY+G Sbjct: 192 MVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVASNKLVIEAYMG 236 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 127 bits (318), Expect = 3e-31 Identities = 78/239 (32%), Positives = 126/239 (52%), Gaps = 15/239 (6%) Query: 3 YDAIEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSP 62 + I AL ++ E+ G++ LIG NG+GK+T +N I G GR+ F D+ G+SP Sbjct: 16 FGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLFKGRDITGMSP 75 Query: 63 HGIVQRGISQVPEGRRVFANLTVEDNLLMGA-------YTRKDAKAV-----RRDMEQVY 110 H I + G+ + + + F NLTV +N+L A Y A+ + +R + + Sbjct: 76 HEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWLGFEKRAAARAF 135 Query: 111 E--RFPRLKERYRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSI 168 E + L + + +G LSGG+ ++L + RA+M +++MDEP+ G+ P L I Sbjct: 136 EILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVNPRLAGSIMER 195 Query: 169 IQDLNRE-GVTILLVEQNAHMALKIAHRGYVLETGNIILSGTVAELLENEEVKRAYLGG 226 I+ L RE G+T L++E + + R Y + G +I SG E+L N V +YLGG Sbjct: 196 IKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEVLNNPVVLESYLGG 254 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 117 bits (294), Expect = 2e-28 Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 16/241 (6%) Query: 1 MNYDAIEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGL 60 + + + AL +S EVR GEI+ +IG NGAGK++ LN I G+ RGR+ F D+ GL Sbjct: 9 LRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDITGL 68 Query: 61 SPHGIVQRGISQVPEGRRVFANLTVEDNLLM-------GAYTRKDAKAVRRDMEQVYER- 112 PH + G+S+ + +F ++TV +N+++ G+ K A R +V R Sbjct: 69 KPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWEVEARE 128 Query: 113 -------FPRLKERYRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREI 165 L E G L G Q+ + L AL P ++LMDEP GL+ +I Sbjct: 129 RAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEKEDI 188 Query: 166 F-SIIQDLNREGVTILLVEQNAHMALKIAHRGYVLETGNIILSGTVAELLENEEVKRAYL 224 +II+ T++L+E + + + R V++ G +I G E + +E V++AYL Sbjct: 189 VRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHEAVADERVRKAYL 248 Query: 225 G 225 G Sbjct: 249 G 249 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 105 bits (261), Expect = 1e-24 Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 9/217 (4%) Query: 2 NYDAIEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLS 61 +Y +EAL G+SF E I ++G +G GK+T L I GL+ RGR+ F D GL Sbjct: 14 SYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFGGVDYTGLP 73 Query: 62 PHGIVQRGISQVPEGRRVFANLTVEDNLLMGAYTRK-DAKAVRRDMEQVYERF---PRLK 117 P +R + V + +F ++TV DN+ G R VRR +E E P + Sbjct: 74 PE---RRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWALETVGLTPPRE 130 Query: 118 ERYRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNRE-G 176 R++ G LSGG+QQ +AL RA+ P +LL+DEP L + + + + ++ L R+ G Sbjct: 131 FMGRRVTG-LSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQRKLG 189 Query: 177 VTILLVEQNAHMALKIAHRGYVLETGNIILSGTVAEL 213 T++ V + A+++A ++ G I+ GT +E+ Sbjct: 190 STMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEV 226 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 103 bits (258), Expect = 3e-24 Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 9/211 (4%) Query: 9 LHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPHG---- 64 L G+S V+ GEI L G NGAGK+T+L + GL+ G E ++G+ P G Sbjct: 30 LRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSG-----EARVLGVDPWGGGFE 84 Query: 65 IVQRGISQVPEGRRVFANLTVEDNLLMGAYTRKDAKAVRRDMEQVYERFPRLKERYRQLA 124 V+ + +PE V+ LT +N+L A + V +E +E + A Sbjct: 85 RVKGEVGYLPEDASVYERLTGMENILFYARLYSGWRDVEELVENAVFYSGLSREDLARRA 144 Query: 125 GTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREGVTILLVEQ 184 G S G ++ L LG LMS+PRL+++DEP+ G+ P+ I I++ L+REG IL+ Sbjct: 145 GGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSREGRAILVTTH 204 Query: 185 NAHMALKIAHRGYVLETGNIILSGTVAELLE 215 + +A +IA R ++ G+ + SG L+E Sbjct: 205 DLALAEEIADRVTIIHGGSTVASGPPYRLVE 235 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 103 bits (258), Expect = 3e-24 Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 24/219 (10%) Query: 8 ALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPHGIVQ 67 AL +S + +GEI TL+G +G GK+TTL I G GR+ D+ L P+ + Sbjct: 18 ALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIGSRDVTMLKPY---E 74 Query: 68 RGISQVPEGRRVFANLTVEDNLLMGAYTRK--DAKAVRR--------DMEQVYERFPRLK 117 R + V + ++ ++ V DN+ G RK ++ VRR +++ + +R+P Sbjct: 75 RNTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWAAELLEIDHLLDRYPH-- 132 Query: 118 ERYRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGL-APLLVREIFSIIQDLNREG 176 LSGG+QQ +A+ RA+++ P +LLMDEP L A L ++ I++ R G Sbjct: 133 --------QLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQKRLG 184 Query: 177 VTILLVEQNAHMALKIAHRGYVLETGNIILSGTVAELLE 215 VTI+ V + AL I+HR V+ G + GT E+ E Sbjct: 185 VTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVYE 223 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 99.8 bits (247), Expect = 5e-23 Identities = 70/217 (32%), Positives = 114/217 (52%), Gaps = 24/217 (11%) Query: 8 ALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPHGIVQ 67 AL GI E+++GE V L+G +G GK+TTL + GL GR+ F D+ GL P Sbjct: 18 ALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFDGRDVTGLPPK---D 74 Query: 68 RGISQVPEGRRVFANLTVEDNLLMGAYTRK--DAKAVRR--------DMEQVYERFPRLK 117 R ++ V + ++ ++ V DN+ +K + VRR +++ + +R+P Sbjct: 75 RNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAAELLEIDHLLDRYPH-- 132 Query: 118 ERYRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNRE-G 176 LSGG+QQ +A+ RA+++ P +LLMDEP L +L ++ S I+ L R G Sbjct: 133 --------QLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKLQRRLG 184 Query: 177 VTILLVEQNAHMALKIAHRGYVLETGNIILSGTVAEL 213 VT++ V + A+ I R V+ G I GT +++ Sbjct: 185 VTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDV 221 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 98.6 bits (244), Expect = 1e-22 Identities = 72/230 (31%), Positives = 116/230 (50%), Gaps = 9/230 (3%) Query: 1 MNYDAIEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGL 60 ++Y + L G+ + GE + ++G +G+GKST L AI LV G I F D+ L Sbjct: 12 VSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVFRGVDVTRL 71 Query: 61 SPHGI--VQRGISQVPEGRRVFANLTVEDNLLMGAYTRKDAKAV-RRDMEQ---VYERFP 114 S + V+R I +P+ +F ++TV N+ Y + A + RRD E+ Y Sbjct: 72 SGSQLRMVRRKIGYLPQSYSLFPHMTVLRNI---TYPLEKALGLSRRDAEERAVKYLSML 128 Query: 115 RLKERYRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNR 174 +++ + LSGG+QQ AL RAL P +LL+DEP+ L P ++ + + Sbjct: 129 GIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEALFRVAT 188 Query: 175 EGVTILLVEQNAHMALKIAHRGYVLETGNIILSGTVAELLENEEVKRAYL 224 G +++V A A+K+A R +E G + G +EL+E E R +L Sbjct: 189 LGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSELVEGSERVRRFL 238 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 98.2 bits (243), Expect = 2e-22 Identities = 67/225 (29%), Positives = 116/225 (51%), Gaps = 6/225 (2%) Query: 2 NYDAIEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLS 61 +Y A+ G+SF + GE+ +L+G NGAGK+TT+ + L+ + G +V Sbjct: 15 DYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWIAGYSIV--R 72 Query: 62 PHGIVQRGISQVPEGRRVFANLTVEDNLLMGA--YTRKDAKAVRRDMEQVYERFPRLKER 119 G V+R I VP+ ++ DN+ + A Y ++A R E V + ++ Sbjct: 73 EPGNVRRVIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEARERTRE-VLDYLDLMEAA 131 Query: 120 YRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREGVTI 179 +R++A T SGG ++ L + +L+ P++L +DEP++GL R ++ I+DL R VTI Sbjct: 132 HRRVA-TYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLKRSAVTI 190 Query: 180 LLVEQNAHMALKIAHRGYVLETGNIILSGTVAELLENEEVKRAYL 224 LL A ++ R +++ G I+ GT EL + + Y+ Sbjct: 191 LLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEELKARVKGETVYI 235 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 95.9 bits (237), Expect = 8e-22 Identities = 63/216 (29%), Positives = 113/216 (52%), Gaps = 8/216 (3%) Query: 3 YDAIEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSP 62 + + A+ + +++GE L+G +G GK+TTL I GL GRI ED+ P Sbjct: 13 FGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILIDGEDVTFKDP 72 Query: 63 HGIVQRGISQVPEGRRVFANLTVEDNLLMGAYTRKDAKAVRRD--MEQVYE--RFPRLKE 118 R ++ V + ++ +++V DN+ + R+ + +D +V E + R+++ Sbjct: 73 K---DRNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIEVAKLLRIED 129 Query: 119 RYRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNRE-GV 177 + G LSGG+QQ +AL RAL+ RP++ LMDEP L LL + + ++ L ++ + Sbjct: 130 LLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELKKLQKDLKI 189 Query: 178 TILLVEQNAHMALKIAHRGYVLETGNIILSGTVAEL 213 T + V + A+ +A R V+ G ++ GT E+ Sbjct: 190 TTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEV 225 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 95.5 bits (236), Expect = 1e-21 Identities = 66/212 (31%), Positives = 100/212 (47%), Gaps = 6/212 (2%) Query: 3 YDAIEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSP 62 Y ++EAL G+SF V GE+ +G NGAGK+TT+ + G + G +L Sbjct: 14 YGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARVFGVELYNPGA 73 Query: 63 HGIVQRGISQVPEGRRVFANLTVEDNLLMGAYTRKDAKAVRRDMEQVYERFPRLKERYRQ 122 G V+R + VP + V ++ + R R + ++ E FP ER Sbjct: 74 SG-VRRRVGYVPGEFEFYGG--VSGGRMLDYWCRLVGGCSRGVVRELLEAFPLPLER--- 127 Query: 123 LAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREGVTILLV 182 GT S G +QMLAL A P L++MDEP+ GL PL + ++ REGVT+ Sbjct: 128 AVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDFVRSKAREGVTVFFS 187 Query: 183 EQNAHMALKIAHRGYVLETGNIILSGTVAELL 214 ++A R +L +G ++ V+ LL Sbjct: 188 SHVLSEVQRVADRVGLLRSGVLVALEDVSSLL 219 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 92.8 bits (229), Expect = 6e-21 Identities = 60/200 (30%), Positives = 107/200 (53%), Gaps = 4/200 (2%) Query: 6 IEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPHGI 65 + A+ ++ + + E V+++G +G+GK+T L I G+ SRGRI F + D+ L P+ Sbjct: 16 VVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFNDVDVTDLPPN-- 73 Query: 66 VQRGISQVPEGRRVFANLTVEDNLLMGAYTRKDAKAVRRDMEQVYERFPRLKERYRQLAG 125 +R I V + ++ ++TV +N+ R + ++ + ++ + Sbjct: 74 -KRNIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVAKLLGIEGLLDRYPA 132 Query: 126 TLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNRE-GVTILLVEQ 184 LSGG+QQ +AL RAL+ P +LL+DEP L LL +I S ++ L +E G+T + V Sbjct: 133 QLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQKELGITAIYVTH 192 Query: 185 NAHMALKIAHRGYVLETGNI 204 + AL +A R ++ +G I Sbjct: 193 DQSEALAMADRIAIIASGVI 212 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 92.8 bits (229), Expect = 6e-21 Identities = 66/233 (28%), Positives = 123/233 (52%), Gaps = 17/233 (7%) Query: 9 LHGISFEVREGEIVTLIGANGAGKST---TLNAICGLVPVSR--GRITFMEEDLVGLSPH 63 L GISF+ + G + ++G +G+GKST +N + L+P +R G + +++ P+ Sbjct: 21 LKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVMKEDPY 80 Query: 64 GIVQRGISQVPEGRRVFANLTVEDNLLMGAYTRKDAKAVRRDMEQVYE-------RFPRL 116 I +R V + F ++T+ +N+ +G AK +++++++ E + + Sbjct: 81 NI-RRYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKN-KKELDEIVEWALKMAHLWDEV 138 Query: 117 KERYRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREI-FSIIQDLNRE 175 K+R LSGG++Q L+L RAL +PR+LL+DEP+ + P+ +I SI++ E Sbjct: 139 KDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKEE 198 Query: 176 GVTILLVEQNAHMALKIAHRGYVLETGNIILSGTVAELL--ENEEVKRAYLGG 226 T+++V A +I+ + L G +I G EL+ E+ + +LGG Sbjct: 199 MATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELVLRPRHELTKKFLGG 251 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 87.8 bits (216), Expect = 2e-19 Identities = 60/224 (26%), Positives = 111/224 (49%), Gaps = 4/224 (1%) Query: 4 DAIEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPH 63 D ++AL + F +R GE+ L+G NGAGK+T + + G + + G I + P Sbjct: 24 DGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYVWGRKVSWRGPW 83 Query: 64 GIVQRGISQVPEGRRVFANLTVEDN--LLMGAYTRKDAKAVRRDMEQVYERFPRLKERYR 121 ++ GI+ V + R+ ++TVE+N + + + ++A RR +E ER L+ Sbjct: 84 DAIRNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRTLETA-ERL-GLEIDLA 141 Query: 122 QLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREGVTILL 181 + L G +Q + + +AL ++L++DEP+ L PL ++FS ++ L GV+++ Sbjct: 142 KTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLRLLKDMGVSVVY 201 Query: 182 VEQNAHMALKIAHRGYVLETGNIILSGTVAELLENEEVKRAYLG 225 + +++A R VL G + EE+ R +G Sbjct: 202 ITHKLGEVVRVADRVTVLRRGRVSAVIEDVGRTSEEELARLMVG 245 Score = 86.3 bits (212), Expect = 6e-19 Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 9/208 (4%) Query: 4 DAIEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPH 63 D +E + +S EVREGEIV + G G G+ ++AI GL RG I + G Sbjct: 273 DGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEVQGRRIEGSLDF 332 Query: 64 GIVQRGISQVPEGRRVFANLTVEDNLLMGAYTRKDAKAVRRDMEQVYERFPRLKERYRQL 123 G G+ + + +V +N+ YT +RR ++ + F RL ER+R + Sbjct: 333 YRAGGGYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRRS--RLEDLFRRLVERFRLV 390 Query: 124 A-------GTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREG 176 A G LSGG QQ + +G ++ +LL+ P+ GL + +++ +L R+G Sbjct: 391 ARSPWTPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTSFVRNLLSELARQG 450 Query: 177 VTILLVEQNAHMALKIAHRGYVLETGNI 204 ILLV + L+++ R YV+ G + Sbjct: 451 AGILLVSTDLDEILELSDRIYVMSGGRV 478 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 81.6 bits (200), Expect = 1e-17 Identities = 67/214 (31%), Positives = 107/214 (50%), Gaps = 13/214 (6%) Query: 6 IEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPHGI 65 I AL G+ +V G + +L+G NGAGK+T + + L+ G D+V + + Sbjct: 26 IRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANN-- 83 Query: 66 VQRGISQVPEGRR-VFANLTVEDNL-----LMGAYTRKDAKAVRRDMEQVYERFPRLKER 119 V+ I V G R ++ L+ DNL L G R+ + V+ +E V L+E Sbjct: 84 VRSRIGVVLGGERALYWRLSGWDNLWFFSQLYGIPPREAKRRVKELLEIV-----GLEEW 138 Query: 120 YRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREGVTI 179 S G +Q L + R L++ P +LL+DEP++GL P RE+ SII+ + REG T+ Sbjct: 139 AHVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTV 198 Query: 180 LLVEQNAHMALKIAHRGYVLETGNIILSGTVAEL 213 LL A +++ R ++ G I+ G +L Sbjct: 199 LLTTHYMVEAEELSDRVAIISKGRIVAEGPPEDL 232 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 80.1 bits (196), Expect = 4e-17 Identities = 57/207 (27%), Positives = 101/207 (48%), Gaps = 9/207 (4%) Query: 9 LHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPHGIVQR 68 L +S V G + ++G NGAGK+T + GL RGR+ + E + G + R Sbjct: 24 LKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALLGEPVERAG--GSLFR 81 Query: 69 GISQVPEGRRVFANLTVEDNLLMGA--YTRKDAKAVRRDMEQVYERFPRLKERYRQLAGT 126 ++ +PE + N+T + L + A Y +D + + ++ RL ER R + Sbjct: 82 RVAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLEGYLEEASRLSGLGGRLGERVR----S 137 Query: 127 LSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLN-REGVTILLVEQN 185 S G ++ L + L +P L ++DEP+ GL P+ I ++++ + R GVT+LL N Sbjct: 138 YSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERHGVTVLLSSHN 197 Query: 186 AHMALKIAHRGYVLETGNIILSGTVAE 212 + + ++ +G I+ SG+ E Sbjct: 198 MYEVESVCSEITMISSGRIVYSGSPGE 224 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 79.3 bits (194), Expect = 7e-17 Identities = 66/215 (30%), Positives = 100/215 (46%), Gaps = 13/215 (6%) Query: 6 IEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPHGI 65 +EAL G+SF V EGEI + +G NGAGK+TT+ + L+ G D+V Sbjct: 25 VEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAGFDVVKERWEVR 84 Query: 66 VQRGISQVPEGRRVFANLTVEDNL-LMGAYTRKDAKAVRRDMEQVYERFPRLKERYRQLA 124 + G+ E R + LT +NL G ++ +++V + L Sbjct: 85 KRIGVMLSVE-RGFYWKLTGRENLYYFGRIYGIPQGELKSRIKEVLDLV-----GLTDLG 138 Query: 125 GT------LSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREGVT 178 G +S G + L L R L+ P +L++DEP++GL P R I +I+ L EG T Sbjct: 139 GADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSLASEGRT 198 Query: 179 ILLVEQNAHMALKIAHRGYVLETGNIILSGTVAEL 213 I + N A I+ R ++ G I + GT EL Sbjct: 199 IFITTHNMVEAEMISDRVGIIIGGRIAMEGTPDEL 233 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 77.8 bits (190), Expect = 2e-16 Identities = 68/229 (29%), Positives = 106/229 (46%), Gaps = 26/229 (11%) Query: 3 YDAIEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSP 62 Y L + EV GE V L+G NGAGK+T + GL GR+ L GL P Sbjct: 14 YRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVL-----LNGLDP 68 Query: 63 --HGIVQRGISQVPEGRRVFANLTVEDNL-----LMGAYTRKDAKAVRRDMEQVYE--RF 113 + G+ V E + +++ V + L ++G+ + A+R + +E F Sbjct: 69 WREPRAREGVGVVFERPNLPSSMPVVEFLESAAAIIGSSPSRVDWAIRAAGLEGHEWKTF 128 Query: 114 PRLKERYRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLN 173 P+L S G +Q A+ AL+ PR L+ DEP+ L PL RE+ ++ LN Sbjct: 129 PQL-----------SAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLN 177 Query: 174 RE-GVTILLVEQNAHMALKIAHRGYVLETGNIILSGTVAELLENEEVKR 221 RE G+++L+ L++A R YVL G + G+ +L + R Sbjct: 178 REHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDLFRRAGLAR 226 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 76.3 bits (186), Expect = 6e-16 Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 27/229 (11%) Query: 6 IEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPHGI 65 + A+ G+ +REGE++ ++G +G GK+T AI G+ S G I + E L+PH + Sbjct: 35 VRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGE---LLTPHRL 91 Query: 66 -----VQRGISQV------------PEGRRVFANLTVEDNLLMGAYTRKDAKAVRRDMEQ 108 ++R + V P G +V E ++ G ++A+ +M + Sbjct: 92 ARDRRLRRKLQMVFQDPYKSLDPLMPVGDQV-----AEPLVIHGLARGEEARRRAVEMLE 146 Query: 109 VYERFPRLKERYRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSI 168 P +E Y + LSGG++Q +A+ R L+ P +++ DEP + + I + Sbjct: 147 TVGLTPG-REFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDL 205 Query: 169 IQDLNRE-GVTILLVEQNAHMALKIAHRGYVLETGNIILSGTVAELLEN 216 I D +R G TI+L+ + +A +A R V+ G I+ G ++EN Sbjct: 206 IMDYHRRTGATIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVIEN 254 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 76.3 bits (186), Expect = 6e-16 Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 20/231 (8%) Query: 6 IEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLV----PVSRGRITFMEE-----D 56 ++A+ +SF + GE L+G G GKS T A+ L+ + G+I + E D Sbjct: 26 VKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGRIVEGKIYYYPEPGRRVD 85 Query: 57 LVGLSPHGIVQ-RG-----ISQVPEGRR---VFANLTVEDNLLMGAYTRKDAKAVRRDME 107 ++ L + + RG I Q P V + +L R + VRR + Sbjct: 86 IMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETMLAHGRVRSLREGVRRAVG 145 Query: 108 QVYE-RFPRLKERYRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIF 166 + P ++R + LSGG +Q +G +L +RP+LL+ DEP+ L + +I Sbjct: 146 VLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLIADEPTTALDVTIQAQIM 205 Query: 167 SIIQDLNRE-GVTILLVEQNAHMALKIAHRGYVLETGNIILSGTVAELLEN 216 ++ L RE G+T+LL+ N + + R V+ GNI+ V EL N Sbjct: 206 DLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEEAPVDELFSN 256 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 75.9 bits (185), Expect = 8e-16 Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 11/218 (5%) Query: 9 LHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPHGIVQR 68 L G+SF + G +V L+G NG+GK+T L + G++ SRGR+ ++ G SP G V+R Sbjct: 22 LRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRV-----EVCG-SPPGRVRR 75 Query: 69 GISQVPEGRRVFANLTVEDNLLMGAYTRKDAKA-VRRDMEQVYERFPRL--KERYRQLAG 125 + P V L + L+ Y + A RRD E+V + E + G Sbjct: 76 MLGYAPASPEVDPRLKAVEVALLYRYGVSEGVAWGRRDWEEVLAALGEMGVGELAWRRWG 135 Query: 126 TLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREGVTILLVEQN 185 LS G+++++ L L RP L L+DEP L +R + +++ L G ++ + Sbjct: 136 ELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRSL--RGRATIVYTTH 193 Query: 186 AHMALKIAHRGYVLETGNIILSGTVAELLENEEVKRAY 223 +A A +L G + G ++ E ++ Y Sbjct: 194 DPLAAMAADSVIMLREGLLHAQGPPEAVVTPETIEEVY 231 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 73.2 bits (178), Expect = 5e-15 Identities = 60/227 (26%), Positives = 116/227 (51%), Gaps = 19/227 (8%) Query: 6 IEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLV-PVSR---GRITFMEEDLVGLS 61 + A+ G+S V +GE ++++G +G+GKST +I L+ P R GRI + DL+ L+ Sbjct: 20 VRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRILYSGVDLLSLA 79 Query: 62 PH----------GIVQRGISQVPEGRRVFANLTVEDNLLMG-AYTRKDAKAVRRDMEQVY 110 G+V + + + R + E L G A + +A+++ D ++ Sbjct: 80 GEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLASSGSEAESMAGDALELV 139 Query: 111 ERFPRLKERYRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQ 170 PR +R LSGG++Q +A+ A+ P++L+ DEP+ L ++ +I +++ Sbjct: 140 G-IPR--DRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKIMDLMK 196 Query: 171 DLNRE-GVTILLVEQNAHMALKIAHRGYVLETGNIILSGTVAELLEN 216 L E G+T++LV + +A + + R V+ G ++ G +++ N Sbjct: 197 KLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDVVSN 243 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 73.2 bits (178), Expect = 5e-15 Identities = 57/225 (25%), Positives = 110/225 (48%), Gaps = 15/225 (6%) Query: 6 IEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVP----VSRGRITFM-----EED 56 + AL G+ +V +GEI+ ++G +G GKST +I ++P + +G I D Sbjct: 22 VNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNTVD 81 Query: 57 LVGLSPHGIVQ-RG--ISQVPEGRRVFANLTVEDNLLMGAYTRKDAKAVRRDMEQVYERF 113 LV LS +V+ RG +S + + + + + + + + V + +++ ++ Sbjct: 82 LVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDHVSGEKRRVEKIAQEILKKL 141 Query: 114 --PRLKERYRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQD 171 P + LSGG +Q + + +L++RPR+++ DEP+ L + +I ++ Sbjct: 142 MMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKMLSR 201 Query: 172 LNRE-GVTILLVEQNAHMALKIAHRGYVLETGNIILSGTVAELLE 215 L E TI+L+ N +A +IA R V+ G+++ V L E Sbjct: 202 LREELETTIILITHNLAVAAEIADRIAVMYAGHVVEVADVFSLFE 246 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 71.6 bits (174), Expect = 2e-14 Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 33/241 (13%) Query: 6 IEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFM--EEDLVGLSPH 63 ++A+ G+SF + GE+ L+G +G GK+TT AI LV + GR+ F +E L L Sbjct: 47 VKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERR 106 Query: 64 GIVQRG-----------------------ISQVPEGR---RVFANLTVEDNLLMGAY--T 95 G+ G + Q P G R +ED LL+ + Sbjct: 107 GVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNA 166 Query: 96 RKDAKAVRRDMEQVYERFPRLKERYRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSM 155 R+ + V R +E V + + + LSGG++Q +A+ RA + P L++ DEP Sbjct: 167 REREEMVARMLEAV--KLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVS 224 Query: 156 GLAPLLVREIFSIIQDLNRE-GVTILLVEQNAHMALKIAHRGYVLETGNIILSGTVAELL 214 L + EI ++ + G ++L + + +A I R V+ G I+ +G ++ Sbjct: 225 MLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDARRII 284 Query: 215 E 215 E Sbjct: 285 E 285 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 71.2 bits (173), Expect = 2e-14 Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 6/223 (2%) Query: 6 IEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPHGI 65 + AL G++ G + L+G NGAGK+T L AI G+V +GRI +L P Sbjct: 18 VHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPKGPGDS 77 Query: 66 VQRGISQVPEGRRVFANLTVEDNL---LMGAYTRKDAKAVRRDMEQVYERFPRLKERYRQ 122 ++ GI + V+ + ++L LM A + + R + + E + R Sbjct: 78 LRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAEASEALGLNIDPDRY 137 Query: 123 LAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREGVTILLV 182 L G + E+Q L + +AL R +L+DEP+ L P + L G +LLV Sbjct: 138 L-GEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAASGAAVLLV 196 Query: 183 EQNAHMALKIAHRGYVLETGNIILSGTVAELLENEEVKRAYLG 225 A++ A R +L G + G EEV + G Sbjct: 197 THRIGEAMEHADRLVILRKGVKVYEGPPPS--STEEVAKLMFG 237 Score = 70.5 bits (171), Expect = 3e-14 Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 9/196 (4%) Query: 15 EVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPHGIVQRGISQVP 74 EVR+GE+V + G G G+ I GL ++GRI D+ P + G+ +P Sbjct: 276 EVRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRLGLGVIP 335 Query: 75 E---GRRVFANLTVEDNLLMGAYTRKDAKAVR-RDMEQVYERFPR----LKERYRQLAGT 126 E G + ++ N+ + +T +D V R E++ E R RQ+ Sbjct: 336 EERLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGIKAVSPRQMVDE 395 Query: 127 LSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREGVTILLVEQNA 186 LSGG Q L L R L +PRLL+ P+ GL L ++ + + ++ E +L+++++ Sbjct: 396 LSGGNMQRLVLARELWLKPRLLVAMNPAAGL-DLEGQQAVAEMMRMSSERGGVLVIDEDL 454 Query: 187 HMALKIAHRGYVLETG 202 L+++++ YV G Sbjct: 455 DFLLRVSNKIYVASGG 470 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 70.5 bits (171), Expect = 3e-14 Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 9/224 (4%) Query: 3 YDAIEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSP 62 Y+ L G++ E R +V +IG NGAGK+T L AI GL+ +RGR+ + G Sbjct: 12 YNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLDGFEATGRPE 71 Query: 63 HGIVQRGISQVPEGRRV--FANLTVEDNLLMGAYTRKDAKAVRRDMEQVYERFPRLKERY 120 +V R VP+ + +TV + + R +A R +E ++ R E Sbjct: 72 --MVGRYAGYVPQNPSAPKLSPMTVREFVETSLRLRGVTRARERAVEVLHTLGIR-GEVL 128 Query: 121 RQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREGVTIL 180 LS G Q + + RA+ P++L+MDEP + P EI II L RE + ++ Sbjct: 129 ESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAGLARERLVLM 188 Query: 181 LVEQNAHMALKIAHRGYVLETG-NIILSGTVAELLENEEVKRAY 223 + +L + H ++ ++I SG E+ + ++R Y Sbjct: 189 ---TSHDPSLLLGHTDIIVVINRDLIASGPPEEVYREDVLRRVY 229 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 68.9 bits (167), Expect = 1e-13 Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 8/205 (3%) Query: 4 DAIEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRIT---FMEEDLVGL 60 + I AL +S V GE++ ++G +G+GK+T LN I G+ + GR+ F G Sbjct: 25 ERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGE 84 Query: 61 SPHGIVQRGISQVPEGRRVFANLTVEDNLLMGAYTRKDAKAVRRDMEQVYERFPRLKERY 120 + V + + LT +N+L+ A +R Q R L + Sbjct: 85 ELRRFRLERVGYVFQQHNLIPTLTALENILLPMALAGKANRLR---GQELLRRVGLGGKE 141 Query: 121 RQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSI-IQDLNREGVTI 179 R+ LSGGEQQ LA+ AL + P +++ DEP+ L I I +++ + G T+ Sbjct: 142 RRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEAHSRGKTV 201 Query: 180 LLVEQNAHMALKIAHRGYVLETGNI 204 +L + +A ++A R V+E G + Sbjct: 202 VLTTHDPRVA-RMADRVAVIEDGRL 225 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 68.6 bits (166), Expect = 1e-13 Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 12/213 (5%) Query: 8 ALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVG---LSPHG 64 A+ G+SF V +GE ++G NG+GK+T L + G++ S G + D+ G G Sbjct: 19 AVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVCGYDVWGDGWREARG 78 Query: 65 IVQRGISQVPEGRRVFANLTVEDNLLMGAYTRKDAKAVRRDMEQVYERFPRLKERYRQLA 124 ++ P RR+ E ++G RR+ +V E ++ ++ Sbjct: 79 LIGFAPQDPPMARRMTG---AEYITVVGGLLGLSPGVARREARRVLEML-GFEDVLGRVV 134 Query: 125 GTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNR--EGVTILLV 182 LSGG+++ L + AL S P ++++DEP GL VR S+ L + +G T+L Sbjct: 135 ARLSGGQRRALGIALALASNPEVVVLDEPGSGLD---VRARESLWASLRKAFKGRTVLFS 191 Query: 183 EQNAHMALKIAHRGYVLETGNIILSGTVAELLE 215 + A + R ++ G + G EL++ Sbjct: 192 SHDPQEAEAESDRVLIMHRGRLAAWGKPRELIQ 224 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 65.5 bits (158), Expect = 1e-12 Identities = 60/227 (26%), Positives = 111/227 (48%), Gaps = 33/227 (14%) Query: 6 IEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPHGI 65 ++A+ G+SF +R GE++ + G +G+GKST +I GLVP GRI + G+ + Sbjct: 22 VKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVP-PPGRIVGGRIMIDGMDVTSM 80 Query: 66 VQRGISQVPEGRRVFANLTVEDNLLMGAYTRKDAKAVRRDMEQV---------YERFPRL 116 + + + ++V N+L YT V R +E+V +E R+ Sbjct: 81 SEAELRRKVRWKKVSMVFQGAMNVLTPVYT------VGRQIEEVLQIHRGVGRHEARQRV 134 Query: 117 KE------RYRQLAG----TLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIF 166 E +R +A LSGG++Q + + AL P +++ DEP+ L ++ +I Sbjct: 135 YELLESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQIL 194 Query: 167 SIIQDLNRE-GVTILLVEQNAHMALKIAHRGYVLETGNIILSGTVAE 212 ++++ L E ++I+L+ + + ++A ET I+ G +AE Sbjct: 195 NLLKKLAWEKNLSIILITHDLSVIAELA------ETVMIMYGGKIAE 235 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 64.3 bits (155), Expect = 2e-12 Identities = 57/254 (22%), Positives = 115/254 (45%), Gaps = 43/254 (16%) Query: 6 IEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGL---------VPVSRGRI------ 50 ++A+ G+S +++GEI+ ++G +G+GK+T I GL + + +G + Sbjct: 27 VKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELEEAVSI 86 Query: 51 --------TFMEEDL--------------VGLSPHGIVQRGISQVPEGRRVFANLTVEDN 88 ED+ + S + +R + V + N ++ Sbjct: 87 YEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMKVG 146 Query: 89 LLMGAYTR-----KDAKAVRRDMEQVYERFPRLKERYRQLAGTLSGGEQQMLALGRALMS 143 ++G R K ++ V+R + +V E KE + LSGG++Q +A+ RAL Sbjct: 147 EIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIARALAL 206 Query: 144 RPRLLLMDEPSMGLAPLLVREIFSIIQDL-NREGVTILLVEQNAHMALKIAHRGYVLETG 202 P++L++DEP+ L + +I ++++L + G+T LL+ + + ++ V+ +G Sbjct: 207 NPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMYSG 266 Query: 203 NIILSGTVAELLEN 216 I+ S L N Sbjct: 267 KIMESAPKHILFTN 280 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 62.8 bits (151), Expect = 7e-12 Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 12/196 (6%) Query: 9 LHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPHGIVQR 68 L G+S + GE V + GANG+GK+T L GL SRGR+++ P G R Sbjct: 20 LRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRVSWG-------CPRG--PR 70 Query: 69 G-ISQVPEGRRVFANLTVEDNLLMGAYTRKDAKAVRRDMEQVYERFPRLKERYRQLAGTL 127 G + V V+ +LTV +N+ + + + + R L++ LA L Sbjct: 71 GCVGYVGHTPMVYGDLTVWENVEFFSSLHGGSLGDYPLAAEAW-RLLGLEKYGSHLASQL 129 Query: 128 SGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREGVTILLVEQNAH 187 S G ++ L + RAL+ PRLLL+DE GL + +++ EG+ +L+ Sbjct: 130 SFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLLRLALGEGLALLMTTPLLE 189 Query: 188 -MALKIAHRGYVLETG 202 L +A R Y L+ G Sbjct: 190 PRYLGLASRVYTLQDG 205 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 60.8 bits (146), Expect = 3e-11 Identities = 65/228 (28%), Positives = 102/228 (44%), Gaps = 28/228 (12%) Query: 8 ALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPHG--- 64 A + F G I+ ++G NGAGK+T L I GLV S G I + G++P Sbjct: 19 AYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEIL-----VEGVNPRSPGF 72 Query: 65 --IVQRGISQVPEGRRVFANLT----VEDNLLMGAYTRKDAKAVRRDMEQVYERFPRLKE 118 ++ R I VPE V T +E + YT +A+ R+ +V L Sbjct: 73 EKLLPR-IGYVPELPVVPLWTTPCILLETLARLEGYTSVEARVRAREALEVVG----LAG 127 Query: 119 RYRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREGVT 178 G LS G ++ + + +A + LL++DEP GL P V + +++ + REG T Sbjct: 128 ECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAREGAT 187 Query: 179 ILLVEQNAHMALKIAHRGYVLETGNIILSGTVAELLENEEVKRAYLGG 226 +++ IA VL+T + G++ EL RA+L G Sbjct: 188 VIVSSHILRELEDIATHVLVLKTDQLFY-GSIEEL-------RAWLSG 227 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 60.5 bits (145), Expect = 4e-11 Identities = 55/220 (25%), Positives = 103/220 (46%), Gaps = 14/220 (6%) Query: 6 IEALHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPHGI 65 ++A+ ++ + G+ + L+G +G+GK+T I L + GRI F D++ L G+ Sbjct: 49 VKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGL 108 Query: 66 VQ-----RGISQVPEG----RRVFANLTVEDNLLMGAYTRKDAKAVRRDMEQVYERFPRL 116 + + I Q P G R+ NL E + G + + + QV L Sbjct: 109 KEFRRRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQVGLNETHL 168 Query: 117 KERYRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNRE- 175 RY SGG++Q +A+ R L +P +++DEP+ L + +I ++++DL R+ Sbjct: 169 Y-RYPH---EFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKY 224 Query: 176 GVTILLVEQNAHMALKIAHRGYVLETGNIILSGTVAELLE 215 +T L + + + ++ V+ G I+ G E+ E Sbjct: 225 SLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEVFE 264 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 60.1 bits (144), Expect = 5e-11 Identities = 58/223 (26%), Positives = 103/223 (46%), Gaps = 20/223 (8%) Query: 9 LHGISFEVREGEIVTLIGANGAGKSTTLNAICG--LVPVSRGRITFMEEDLVGLSPHGIV 66 L+ + F+++ GE+ ++G NG+GKS+ I G + V G I E + L P Sbjct: 18 LNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDILLDGESIKELPPEERA 77 Query: 67 QRGI-------SQVPEGRRVFANLTVEDNLLMGAYTRK---DAKAVRRDMEQVYERFPRL 116 +GI Q+P G R+ + + N +GA D K V+R E + Sbjct: 78 LKGIFMAQQDPPQIP-GVRLSSLIIAFVNKRLGAQDLSKPADPKIVKRMYEYATKLGLDR 136 Query: 117 KERYRQLAGTLSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREG 176 + R++ SGGE++ L +A++ P+++++DEP GL ++ + I+ L G Sbjct: 137 EILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGLKIVAEFIKQLRDSG 196 Query: 177 VTILLVEQNAHM-------ALKIAHRGYVLETGNIILSGTVAE 212 ++L+ A + + + +RG VL G L+ V E Sbjct: 197 RGVMLITHYARLLNFVEPDRVTVLYRGSVLARGGAELARQVEE 239 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 51.6 bits (122), Expect = 2e-08 Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 29/208 (13%) Query: 9 LHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPHGIVQR 68 L ++ + G + ++GANG+GK+T L L+ RG + P +R Sbjct: 7 LRDVTLSIPRG-VTAILGANGSGKTTLLKLAARLLKPDRGSVE---------GP----RR 52 Query: 69 GISQVPEGRRVFANLTVEDNLLMGAYTRKDAKAVRRD--MEQVYERFPRLKERYRQLAGT 126 + + F TV ++L A R +A + R+ +E ER P T Sbjct: 53 VGAALQNPYLGFLGPTVAEDLARTAGGRGEALKLLREAGLEYASERSPY----------T 102 Query: 127 LSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREGVTILLVEQNA 186 LS GE ++L++ A+ P +++DEP+ GL R + S+I R GV +L+ + Sbjct: 103 LSMGEARILSVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLIA---RLGVPVLVAGHDI 159 Query: 187 HMALKIAHRGYVLETGNIILSGTVAELL 214 A +A +L G + +SG + +L Sbjct: 160 DFAAAVAGWAVILRDGRVRVSGDMERVL 187 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 50.1 bits (118), Expect = 5e-08 Identities = 54/196 (27%), Positives = 77/196 (39%), Gaps = 15/196 (7%) Query: 9 LHGISFEVREGEIVTLIGANGAGKSTTLNAICGLVPVSRGRITFMEEDLVGLSPHGIVQR 68 L G+S E G I L G G GKST L GL G E + G Sbjct: 20 LRGVSLEAPRG-ITLLAGPTGGGKSTILRVAAGLATRIYGGYLRGEVEARGKPV------ 72 Query: 69 GISQVPEGRRVFANLTVEDNLLMGAYTRKDAKA--VRRDMEQVYERFPRLKERYRQLAGT 126 VP+ +F L Y RR+ ++ E +++ + Sbjct: 73 ---LVPQDYDLFILSLTPREELEYCYEASGLPPWEARREAVRLAEELG-IEDLLDRRVSK 128 Query: 127 LSGGEQQMLALGRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREGVTILLVEQNA 186 LS GE+Q +A+ AL +LLMDEP PL V + +++ L+ EGV + E Sbjct: 129 LSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVESLIRLLRRLDVEGVVV--AEHRV 186 Query: 187 HMALKIAHRGYVLETG 202 H L A Y++ G Sbjct: 187 HYLLPAASSVYLVYDG 202 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 46.6 bits (109), Expect = 5e-07 Identities = 52/183 (28%), Positives = 78/183 (42%), Gaps = 23/183 (12%) Query: 19 GEIVTLIGANGAGKSTTLNAICG-LVPVSRGRITFMEEDLVGLSPHGIVQRGISQVPEGR 77 GE++ + G NG GK+T + + G L PV ++E+ V P I + Sbjct: 383 GEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYVEDLRVSYKPQYISPESLPDA---- 438 Query: 78 RVFANLTVEDNLLMGAYTRKDAKAVRRDMEQVYERFPRLKERYRQLAGTLSGGEQQMLAL 137 TVE +L A A ++E V RL + + TLSGGE Q +A+ Sbjct: 439 ------TVEQ-VLKAANPAILAPGSWLNLELVKRM--RLDKLLERRVRTLSGGELQKVAV 489 Query: 138 GRALMSRPRLLLMDEPSMGLAPLLVREIFSIIQDLNREGVTILLVEQNAHMALKIAHRGY 197 AL + L+DEPS A L V E + + + R +VE AL + H Sbjct: 490 AAALAREADVYLLDEPS---AYLDVEERVGVARAIRR------IVETREAAALVVEHDLM 540 Query: 198 VLE 200 +L+ Sbjct: 541 ILD 543 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 228,100 Number of Sequences: 1700 Number of extensions: 10099 Number of successful extensions: 139 Number of sequences better than 1.0e-04: 40 Number of HSP's better than 0.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 48 length of query: 226 length of database: 492,079 effective HSP length: 74 effective length of query: 152 effective length of database: 366,279 effective search space: 55674408 effective search space used: 55674408 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719580|ref|YP_003875112.1| branched-chain amino acid ABC transporter ATP-binding protein [Spirochaeta thermophila DSM 6192] (264 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 187 2e-49 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 184 2e-48 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 171 2e-44 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 132 9e-33 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 119 1e-28 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 109 6e-26 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 107 4e-25 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 107 4e-25 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 105 2e-24 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 104 2e-24 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 103 3e-24 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 103 6e-24 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 102 1e-23 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 99 8e-23 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 97 3e-22 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 97 4e-22 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 97 5e-22 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 96 7e-22 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 95 2e-21 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 90 7e-20 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 84 3e-18 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 84 3e-18 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 82 1e-17 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 81 2e-17 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 80 4e-17 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 79 1e-16 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 79 2e-16 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 76 1e-15 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 75 2e-15 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 72 1e-14 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 72 1e-14 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 72 1e-14 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 71 3e-14 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 69 9e-14 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 68 2e-13 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 68 3e-13 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 65 2e-12 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 61 3e-11 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 55 1e-09 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 40 5e-05 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 187 bits (476), Expect = 2e-49 Identities = 97/256 (37%), Positives = 155/256 (60%), Gaps = 6/256 (2%) Query: 4 ILEVRDLSISFGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILF 63 +L ++++ FGG+ A+D+ + + GE++G+IGPNGAGKT++ N++TG+Y+P GR+ F Sbjct: 1 MLWTENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYF 60 Query: 64 RGRRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVF 123 +GR DIT LKPHQ + G++RTFQ+ L +VLEN+++ H S+L+ Sbjct: 61 KGR------DITGLKPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKAL 114 Query: 124 RTGRYYHGERALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLLD 183 R E + A + + + LP G Q+K+++ ALA +P ++L+D Sbjct: 115 WAFRAKRWEVEARERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMD 174 Query: 184 EPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEGDP 243 EP AG++ +E ++ I E T++LIEHDM +V +VC+R+VV+DYG++I EG P Sbjct: 175 EPMAGLSKEEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPP 234 Query: 244 ESIRRNPEVIKAYLGE 259 + V KAYLGE Sbjct: 235 HEAVADERVRKAYLGE 250 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 184 bits (468), Expect = 2e-48 Identities = 110/258 (42%), Positives = 158/258 (61%), Gaps = 22/258 (8%) Query: 1 MKSILEVRDLSISFGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGR 60 M IL+VRD+ FGG+ A+ ++ GE VGLIGPNGAGKTT+FN+++GIY P GR Sbjct: 1 MTIILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGR 60 Query: 61 ILFRGRRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLD 120 ++++G DIT ++ + GIARTFQ +R L +VL NV++ Sbjct: 61 VIYKG------VDITGWPAYRRSRAGIARTFQIVRPLANLTVLNNVIVG----------- 103 Query: 121 AVFRTGRYYHGERALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLL 180 A+ RT + R + AME + + G+ GK LA++L E+++LE+ RALAT P LL Sbjct: 104 ALLRT----NDIREARERAMEAIDMVGLAGKEDILAKDLNLIEKKRLELARALATQPELL 159 Query: 181 LLDEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAE 240 LLDE AAG+ P+E L+ + I +R +TI+++EH M VMN ER++VL +G IAE Sbjct: 160 LLDEIAAGLRPREVDDLVYTLLEISKR-GITIIMVEHVMRAVMNFAERVIVLHFGEKIAE 218 Query: 241 GDPESIRRNPEVIKAYLG 258 G P + N VI+AY+G Sbjct: 219 GTPREVASNKLVIEAYMG 236 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 171 bits (433), Expect = 2e-44 Identities = 95/256 (37%), Positives = 148/256 (57%), Gaps = 9/256 (3%) Query: 4 ILEVRDLSISFGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILF 63 IL V DL FGG+ A+D L + G++ LIGPNG+GKTT+ N+++G Y+P GR+LF Sbjct: 6 ILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLF 65 Query: 64 RGRRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVF 123 +GR DIT + PH+I+ G+ RTFQ + +VLENVL A L + Sbjct: 66 KGR------DITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLA 119 Query: 124 RTGRYYHG-ERALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLL 182 R R + G E+ A E L G++ + L G+ + LEI RA+ ++++ Sbjct: 120 R--RLWLGFEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIM 177 Query: 183 DEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEGD 242 DEPAAG+NP+ ++M+ I+++ +T L+IEH + LV +R+ + G++IA G Sbjct: 178 DEPAAGVNPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGK 237 Query: 243 PESIRRNPEVIKAYLG 258 P+ + NP V+++YLG Sbjct: 238 PDEVLNNPVVLESYLG 253 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 132 bits (332), Expect = 9e-33 Identities = 82/256 (32%), Positives = 136/256 (53%), Gaps = 23/256 (8%) Query: 4 ILEVRDLSISFGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILF 63 +LEV+ + + +G +A+ L + +GE+V L+G NGAGKTT ++G+ +P +G I++ Sbjct: 6 LLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIW 65 Query: 64 RGRRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVF 123 +GR DIT L + GI+ + + +V EN+ +A R Sbjct: 66 QGR------DITGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRVAASTR---------- 109 Query: 124 RTGRYYHGERALVDEAMEFLSIFGI-EGKARELAQNLPYGEQRKLEIVRALATHPVLLLL 182 + D + +IF I + + +LA L GEQ+ L I RAL P+LL++ Sbjct: 110 ------RAKEHFQDSLEQVYTIFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMM 163 Query: 183 DEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEGD 242 DEP+ G+ PK R ++ L +RE +TILL+E ++ L + V +R V++ GRI+ EG Sbjct: 164 DEPSLGLAPKLARDVIYLASRLREELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGA 223 Query: 243 PESIRRNPEVIKAYLG 258 + + +P + AYLG Sbjct: 224 SDELALDPRIKAAYLG 239 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 119 bits (297), Expect = 1e-28 Identities = 82/260 (31%), Positives = 130/260 (50%), Gaps = 22/260 (8%) Query: 1 MKSILEVRDLSISFGG-LRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSG 59 M +L V ++ I + + + + L++ +G + LIGPNGAGKTT+ ++G+ + G Sbjct: 1 MGPLLNVSNVEIMYHPFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERG 60 Query: 60 RILFRGRRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLL 119 R+ RG E DIT+ +P +I RG+ + R+ K + EN L+ Sbjct: 61 RVT-RGSIQLEGEDITNREPDEIARRGVIYVMEGRRIFKELTTEEN------------LV 107 Query: 120 DAVFRTGRYYHGERALVDEAMEFLSIFG-IEGKARELAQNLPYGEQRKLEIVRALATHPV 178 + G A D+ LS F ++ + E A NL GEQ+ L I AL P Sbjct: 108 SVAYAAG-------ASRDDIRSVLSYFPRLKERLGEKAGNLSGGEQQMLAIAMALLYRPK 160 Query: 179 LLLLDEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRII 238 LL+LDEP+ G+ PK T + I+ + LTILL E + + + + V++ GRI+ Sbjct: 161 LLMLDEPSLGLAPKITSQIYATIKMLHREEGLTILLAEQNARKALEISDYGYVIENGRIV 220 Query: 239 AEGDPESIRRNPEVIKAYLG 258 EG E +R + +V + YLG Sbjct: 221 LEGSAEELRLDKDVAEFYLG 240 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 109 bits (273), Expect = 6e-26 Identities = 68/237 (28%), Positives = 114/237 (48%), Gaps = 24/237 (10%) Query: 14 FGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFRGRRDEEPRD 73 FG + AV L + + E V ++GP+G+GKTT+ ++ GIY+P+ GRI F D Sbjct: 13 FGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFNDV------D 66 Query: 74 ITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVFRTGRYYHGER 133 +TDL P++ R I FQN L +V EN+ R GE Sbjct: 67 VTDLPPNK---RNIGLVFQNYALYPHMTVYENIAFPLRLR---------------NFGEP 108 Query: 134 ALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLLDEPAAGMNPKE 193 A+ ++ + + GIEG L G+Q+++ + RAL P +LLLDEP + ++ Sbjct: 109 AIKEKVLSVAKLLGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALL 168 Query: 194 TRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEGDPESIRRNP 250 + ++ +++ +T + + HD S + + +RI ++ G I G P + P Sbjct: 169 RIKIRSELKKLQKELGITAIYVTHDQSEALAMADRIAIIASGVIQQVGKPWDVYYKP 225 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 107 bits (266), Expect = 4e-25 Identities = 78/250 (31%), Positives = 119/250 (47%), Gaps = 32/250 (12%) Query: 2 KSILEVRDLSISFGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRI 61 ++++ +L +GG RAVD + GEL L+GPNGAGKTT ML+ + RPTSG Sbjct: 4 EAMVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEA 63 Query: 62 LFRG----RRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYS 117 G R R + L P +T+ + N+ + A Y +P S Sbjct: 64 WIAGYSIVREPGNVRRVIGLVPQDLTADDEMSGWDNV-----------YIQARLYGLPSS 112 Query: 118 LLDAVFRTGRYYHGERALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHP 177 R E +++L + +E R +A G +RKLEI +L P Sbjct: 113 -------------EARERTREVLDYLDL--MEAAHRRVA-TYSGGMRRKLEIAMSLVHSP 156 Query: 178 VLLLLDEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRI 237 +L LDEP G++ R+L I ++ R ++TILL H M + +R+ ++D GRI Sbjct: 157 KVLFLDEPTLGLDVHSRRSLWRYIEDLK-RSAVTILLTTHYMEEAEMLSDRVAIIDRGRI 215 Query: 238 IAEGDPESIR 247 +AEG PE ++ Sbjct: 216 VAEGTPEELK 225 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 107 bits (266), Expect = 4e-25 Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 24/240 (10%) Query: 14 FGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFRGRRDEEPRD 73 FG + AVDH L++ +GE L+GP+G GKTT ++ G+ P GRIL G D Sbjct: 13 FGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILIDGE------D 66 Query: 74 ITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLL--DAVFRTGRYYHG 131 +T P R +A FQN L SV +N+ H R L D + R Sbjct: 67 VTFKDPKD---RNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRR------- 116 Query: 132 ERALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLLDEPAAGMNP 191 +E + IE L G+Q+++ + RAL P + L+DEP + ++ Sbjct: 117 ------RVIEVAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDA 170 Query: 192 KETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEGDPESIRRNPE 251 A+ ++ +++ +T + + HD + M++ +RI V++ GR++ G PE + P+ Sbjct: 171 LLRLAMRAELKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEVYMRPK 230 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 105 bits (261), Expect = 2e-24 Identities = 71/264 (26%), Positives = 128/264 (48%), Gaps = 23/264 (8%) Query: 1 MKSILEVRDLSISFGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGR 60 M +LEVR L +S+ G + + ++L GE + ++GP+G+GK+T+ + + P SG Sbjct: 1 MARLLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGS 60 Query: 61 ILFRGRRDEEPRDITDLKPHQI--TSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSL 118 I+FRG D+T L Q+ R I Q+ L +VL N+ + S Sbjct: 61 IVFRG------VDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSR 114 Query: 119 LDAVFRTGRYYHGERALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPV 178 DA + A+++LS+ GIE A L G+Q++ + RALA P Sbjct: 115 RDA--------------EERAVKYLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPD 160 Query: 179 LLLLDEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRII 238 +LLLDEP + ++P+ +++ + F ++++ H+ + V +R+ ++ G + Sbjct: 161 ILLLDEPTSALDPESRADVLEAL-FRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVK 219 Query: 239 AEGDPESIRRNPEVIKAYLGEEVE 262 EG P + E ++ +L +E Sbjct: 220 EEGKPSELVEGSERVRRFLESILE 243 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 104 bits (260), Expect = 2e-24 Identities = 69/256 (26%), Positives = 127/256 (49%), Gaps = 25/256 (9%) Query: 4 ILEVRDLSISFGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILF 63 I+++ D+S +G L+ + L + G + ++GPNGAGK+T+ + G GR+LF Sbjct: 5 IIKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLF 64 Query: 64 RGRRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVF 123 E D+T + PH G+ FQ + + +V EN+ +A Y L + VF Sbjct: 65 ------ENTDVTHMPPHDRAKIGMTFIFQLENIFRELTVYENLRLA-----GYDLPEDVF 113 Query: 124 RTGRYYHGERALVDEAMEFLSIF-GIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLL 182 R D E S+F ++ + + A L GE++ L + + P + L+ Sbjct: 114 R------------DRLEEVFSMFPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLI 161 Query: 183 DEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEGD 242 DEP AG++PK + ++ +R + + T++L+E ++ + + ++ V++ GRI +G Sbjct: 162 DEPTAGLSPKLAKEVLSYVRILNKE-GYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDGP 220 Query: 243 PESIRRNPEVIKAYLG 258 E + ++ K YLG Sbjct: 221 AEELLARKDLAKMYLG 236 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 103 bits (258), Expect = 3e-24 Identities = 68/224 (30%), Positives = 115/224 (51%), Gaps = 22/224 (9%) Query: 16 GLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFRGRRDEEPRDIT 75 G++A+D+ TL GE+ L+G NGAGKTT+ +L G +PT G I GR+ ++ Sbjct: 25 GVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYVWGRK------VS 78 Query: 76 DLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVFRTGRYYHGERAL 135 P GIA +Q RL++ +V EN+ I Y + +A RT Sbjct: 79 WRGPWDAIRNGIAMVYQQFRLVESMTVEENIAI-YLSSLGLGRSEARRRT---------- 127 Query: 136 VDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLLDEPAAGMNPKETR 195 +E G+E + +LP G ++++EI++AL+ +L+LDEP + + P E Sbjct: 128 ----LETAERLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAE 183 Query: 196 ALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIA 239 L +R +++ ++++ I H + V+ V +R+ VL GR+ A Sbjct: 184 KLFSTLRLLKD-MGVSVVYITHKLGEVVRVADRVTVLRRGRVSA 226 Score = 58.5 bits (140), Expect = 2e-10 Identities = 66/258 (25%), Positives = 109/258 (42%), Gaps = 21/258 (8%) Query: 2 KSILEVRDLSISFGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRI 61 + +L VR +S+ G+ V L + EGE+VG+ G G G+ + + + G+ RP G I Sbjct: 260 RELLSVRGVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSI 319 Query: 62 LFRGRRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDA 121 +GRR E D G + L SV EN+ Y Y +LL Sbjct: 320 EVQGRRIEGSLDF------YRAGGGYIAGDRGKVLAMDYSVAENIAFLY-YTASKTLL-- 370 Query: 122 VFRTGRYYHGERALVDEAMEFLSIFGIEGKAR-ELAQNLPYGEQRKLEIVRALATHPVLL 180 R R R LV+ F + ++ L G Q+K+ + + LL Sbjct: 371 -LRRSRLEDLFRRLVER-------FRLVARSPWTPVGRLSGGNQQKVIVGSEVLRGFKLL 422 Query: 181 LLDEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAE 240 + P G++ T + +L+ + R ILL+ D+ ++ + +RI V+ GR+ Sbjct: 423 VAVNPTQGLDIATTSFVRNLLSEL-ARQGAGILLVSTDLDEILELSDRIYVMSGGRV--T 479 Query: 241 GDPESIRRNPEVIKAYLG 258 G E + PE + +G Sbjct: 480 GVLERSQATPEKLGVLMG 497 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 103 bits (256), Expect = 6e-24 Identities = 70/237 (29%), Positives = 116/237 (48%), Gaps = 24/237 (10%) Query: 14 FGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFRGRRDEEPRD 73 FG A+ L + +GE V L+GP+G GKTT ++ G+ RP +GR+ F GR D Sbjct: 13 FGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFDGR------D 66 Query: 74 ITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVFRTGRYYHGER 133 +T L P R +A FQ+ L V +N IA+ ++ D + R R+ Sbjct: 67 VTGLPPKD---RNVAMVFQSYALWPHMRVFDN--IAFPLKIKKLPRDEIVRRVRW----- 116 Query: 134 ALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLLDEPAAGMNPKE 193 A E L I + + L G+Q+++ + RA+ T P +LL+DEP + ++ Sbjct: 117 -----AAELLEIDHLLDR---YPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAIL 168 Query: 194 TRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEGDPESIRRNP 250 + I+ ++ R +T++ + HD M + +RIVV+++G I G P + P Sbjct: 169 RIKMRSEIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDVYHRP 225 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 102 bits (253), Expect = 1e-23 Identities = 67/246 (27%), Positives = 117/246 (47%), Gaps = 24/246 (9%) Query: 5 LEVRDLSISFGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFR 64 + + ++ FG A+D L + +GE+ L+GP+G GKTT ++ G P GR+ Sbjct: 4 IRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIG 63 Query: 65 GRRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVFR 124 R D+T LKP++ R A FQN L V +N IAY ++ + R Sbjct: 64 SR------DVTMLKPYE---RNTAMVFQNYALWPHMRVFDN--IAYGLKLRKLPRSEIVR 112 Query: 125 TGRYYHGERALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLLDE 184 R+ A E L I + + L G+Q+++ + RA+ T P +LL+DE Sbjct: 113 RVRW----------AAELLEIDHLLDR---YPHQLSGGQQQRVAVARAIVTEPEVLLMDE 159 Query: 185 PAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEGDPE 244 P + ++ + + I +++R +TI+ + HD +++ R+ V++ GR+ G P Sbjct: 160 PLSNLDAHLRLKMREEIVRLQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPM 219 Query: 245 SIRRNP 250 + P Sbjct: 220 EVYEKP 225 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 99.4 bits (246), Expect = 8e-23 Identities = 69/235 (29%), Positives = 109/235 (46%), Gaps = 26/235 (11%) Query: 15 GGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFRGRRDEEPRDI 74 GG + LT+ G + G++GPNGAGKTT+F L G+YR GR+ G EP Sbjct: 19 GGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALLG----EP--- 71 Query: 75 TDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVFRTGRYYHGERA 134 R F+ + L + + + Y+ + +G Sbjct: 72 --------VERAGGSLFRRVAYLPEDGEPYRNMTGHEFLRLYASI----------YGVED 113 Query: 135 LVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLLDEPAAGMNPKET 194 L E + G+ G+ E ++ G +R+L + LA P L +LDEP AG++P + Sbjct: 114 LEGYLEEASRLSGLGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYS 173 Query: 195 RALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEGDP-ESIRR 248 + L++ ER +T+LL H+M V +VC I ++ GRI+ G P E++RR Sbjct: 174 VGIRRLLKEYSERHGVTVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGEAVRR 228 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 97.4 bits (241), Expect = 3e-22 Identities = 73/249 (29%), Positives = 111/249 (44%), Gaps = 30/249 (12%) Query: 1 MKSILEVRDLSISFGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGR 60 M ++LE R + + G +D L +G GE VGL+GPNGAGKTT+ + G+ R GR Sbjct: 1 MDTVLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGR 60 Query: 61 ILFRGRRD-EEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLL 119 +L G EPR G+ F+ L V+E + A Sbjct: 61 VLLNGLDPWREPR----------AREGVGVVFERPNLPSSMPVVEFLESA---------- 100 Query: 120 DAVFRTGRYYHGERALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVL 179 + VD A+ G+EG + L G +++ I AL P Sbjct: 101 ------AAIIGSSPSRVDWAIRAA---GLEGHEWKTFPQLSAGLKQRAAIAHALLGEPRF 151 Query: 180 LLLDEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIA 239 L+ DEP + ++P E R ++ L+ + L++L+ H + ++ V RI VL GR+ A Sbjct: 152 LVADEPTSNLDPLERREVLRLLARLNREHGLSLLVSSHVIVELLRVATRIYVLAGGRLAA 211 Query: 240 EGDPESIRR 248 EG PE + R Sbjct: 212 EGSPEDLFR 220 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 97.1 bits (240), Expect = 4e-22 Identities = 71/249 (28%), Positives = 116/249 (46%), Gaps = 43/249 (17%) Query: 17 LRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFRGRRDEEPRDITD 76 +RAVD L + EGE++ ++G +G GKTT+ + GI P+ G I +RG Sbjct: 35 VRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGEL--------- 85 Query: 77 LKPHQIT-SRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVFRTGRYY------ 129 L PH++ R + R Q + ++ PY LD + G Sbjct: 86 LTPHRLARDRRLRRKLQMV-----------------FQDPYKSLDPLMPVGDQVAEPLVI 128 Query: 130 ----HGERALVDEAMEFLSIFGIEGKARELAQNLPY----GEQRKLEIVRALATHPVLLL 181 GE A A+E L G+ RE P+ G+++++ I R L P +++ Sbjct: 129 HGLARGEEAR-RRAVEMLETVGLT-PGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIV 186 Query: 182 LDEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEG 241 DEP + ++ +++DLI R TI+LI HD+++ V +RI V+ G+I+ G Sbjct: 187 ADEPVSMIDVSMRASILDLIMDYHRRTGATIVLITHDIAVARAVADRIAVMYLGKIVEVG 246 Query: 242 DPESIRRNP 250 +P S+ NP Sbjct: 247 EPRSVIENP 255 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 96.7 bits (239), Expect = 5e-22 Identities = 72/231 (31%), Positives = 109/231 (47%), Gaps = 23/231 (9%) Query: 17 LRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFRGRRDEEPRDITD 76 +RA+D L +G G L L+GPNGAGKTT+ +L+ + P SG Sbjct: 26 IRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWA--------------- 70 Query: 77 LKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVFRTGRYYHGERALV 136 ++ + R N+R G V+ A ++R+ + F + Y R Sbjct: 71 ----RVAGFDVVREANNVRSRIG--VVLGGERALYWRLS-GWDNLWFFSQLYGIPPREAK 123 Query: 137 DEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLLDEPAAGMNPKETRA 196 E L I G+E A +N G +++L I R L P +LLLDEP G++PK R Sbjct: 124 RRVKELLEIVGLEEWAHVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAARE 183 Query: 197 LMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEGDPESIR 247 + +IR I R T+LL H M + +R+ ++ GRI+AEG PE ++ Sbjct: 184 VRSIIRRI-VREGRTVLLTTHYMVEAEELSDRVAIISKGRIVAEGPPEDLK 233 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 96.3 bits (238), Expect = 7e-22 Identities = 68/257 (26%), Positives = 125/257 (48%), Gaps = 21/257 (8%) Query: 15 GGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILF---RGRRDEEP 71 G ++AVD L+L +GE++G++G +G+GKTT+ + G++RP +G + +G +E Sbjct: 25 GYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELEEAV 84 Query: 72 RDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRV-------PYSLLDAVFR 124 LK + R + ++ I ++ R PYS L+ + Sbjct: 85 SIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMK 144 Query: 125 TGRYY------HG-ERALVDEAMEFLSIFGIEGKARELAQNLPY----GEQRKLEIVRAL 173 G HG E++ + + G +E A PY G+++++ I RAL Sbjct: 145 VGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIARAL 204 Query: 174 ATHPVLLLLDEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLD 233 A +P +L+LDEP + ++ ++ L+R + +++ LT LLI HD+S+V + +VV+ Sbjct: 205 ALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMY 264 Query: 234 YGRIIAEGDPESIRRNP 250 G+I+ + NP Sbjct: 265 SGKIMESAPKHILFTNP 281 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 94.7 bits (234), Expect = 2e-21 Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 25/249 (10%) Query: 5 LEVR--DLSISFGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRIL 62 +EVR ++ S+G + A+ + E + ++GP+G GKTT+ ++ G+ +P GR+ Sbjct: 4 VEVRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVF 63 Query: 63 FRGRRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAV 122 F G D T L P + R + FQ++ L +V +NV Sbjct: 64 FGGV------DYTGLPPER---RSVGFVFQDLALFPHMTVYDNVAFG------------- 101 Query: 123 FRTGRYYHGE-RALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLL 181 R + GE R V+ A+E + + L G+Q+++ + RA+A P +LL Sbjct: 102 LRARGFSGGEVRRQVEWALETVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLL 161 Query: 182 LDEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEG 241 LDEP + ++ K + L+ ++ ++ + T++ + HD M + + +V++ GRI+ G Sbjct: 162 LDEPLSHLDFKIRQRLLAELKRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHG 221 Query: 242 DPESIRRNP 250 P + P Sbjct: 222 TPSEVYTRP 230 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 89.7 bits (221), Expect = 7e-20 Identities = 66/261 (25%), Positives = 122/261 (46%), Gaps = 31/261 (11%) Query: 3 SILEVRDLSISF----GGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRP-- 56 ++L+++DL + + G +RAVD L++ +GE + ++G +G+GK+T+ + + P Sbjct: 2 AVLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPG 61 Query: 57 --TSGRILFRGRRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRV 114 GRIL+ G DL ++ + +R +GR + Y Sbjct: 62 RIVGGRILYSG---------VDL---------LSLAGEELRRYRGREIGMVFQDPTAYLD 103 Query: 115 PYSLLDAVFRTGRYYHGERALVDEAMEF----LSIFGI-EGKARELAQNLPYGEQRKLEI 169 PY + + HG + EA L + GI +A L G+++++ I Sbjct: 104 PYRTVGSQIAESLLEHGLASSGSEAESMAGDALELVGIPRDRASVYPHQLSGGQRQRVAI 163 Query: 170 VRALATHPVLLLLDEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERI 229 A+A P +L+ DEP ++ +MDL++ ++E LT++L+ HD+ L +RI Sbjct: 164 AAAVALEPKILIADEPTTALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRI 223 Query: 230 VVLDYGRIIAEGDPESIRRNP 250 V+ G ++ G E + NP Sbjct: 224 AVMYAGELVEIGPAEDVVSNP 244 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 84.3 bits (207), Expect = 3e-18 Identities = 62/269 (23%), Positives = 124/269 (46%), Gaps = 54/269 (20%) Query: 1 MKSILEVRDLSISFGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGR 60 +K V+ L + ++AVD+ + + G+ +GL+G +G+GKTT ++ + PT GR Sbjct: 33 LKKYFPVKSLFFTRAYVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGR 92 Query: 61 ILFRGRRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLD 120 I F G D+ L+ RG+ + +++ ++ PY L+ Sbjct: 93 IFFDGI------DVMKLR-----GRGLKEFRRRAQII--------------FQDPYGSLN 127 Query: 121 AVFRTGRYYHGERALVDEAMEFLSIFGIE-GKARELAQNLPY------------------ 161 + + + E + + GI+ G +E +L Y Sbjct: 128 P----------RKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQVGLNETHLYRYPHEFSG 177 Query: 162 GEQRKLEIVRALATHPVLLLLDEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSL 221 G+++++ I R LA P ++LDEP + ++ +++L++ ++ ++SLT L I HD+ + Sbjct: 178 GQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTYLFISHDLGV 237 Query: 222 VMNVCERIVVLDYGRIIAEGDPESIRRNP 250 V + + I V+ G+I+ G+ E + P Sbjct: 238 VRYMSDYIAVMYLGKIVEFGEAEEVFEKP 266 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 84.3 bits (207), Expect = 3e-18 Identities = 70/256 (27%), Positives = 115/256 (44%), Gaps = 23/256 (8%) Query: 5 LEVRDLSISF-GGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILF 63 L V DL + + GG+ A+ + G + L+G NGAGKTT+ + G+ +P GRIL Sbjct: 5 LAVEDLDVVYPGGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILV 64 Query: 64 RGRRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVF 123 G ++ P GI QN + G E++ + +L+ A Sbjct: 65 DG------YELRPKGPGDSLRSGIYMASQNPPVYPGIKAYEDLAV--------TLMVAGR 110 Query: 124 RTGRYYHGERALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLLD 183 + G R ++ EA E L G+ + + E+++LE+++ALA +LLD Sbjct: 111 KAG--LRQARTMLAEASEAL---GLNIDPDRYLGEMGFSERQRLEVIKALALGSRAVLLD 165 Query: 184 EPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEGDP 243 EP + P+E +++ + +LL+ H + M +R+V+L G + EG P Sbjct: 166 EPTTHLTPEEAARMLEAAGRLAAS-GAAVLLVTHRIGEAMEHADRLVILRKGVKVYEGPP 224 Query: 244 ESIRRNPEVIKAYLGE 259 S EV K GE Sbjct: 225 PS--STEEVAKLMFGE 238 Score = 72.4 bits (176), Expect = 1e-14 Identities = 58/215 (26%), Positives = 100/215 (46%), Gaps = 21/215 (9%) Query: 24 RLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFRGRRDEEPRDITDLKPHQIT 83 RL + +GE+VG+ G G G+ +F ++ G+ +P GRIL G D+T P Sbjct: 274 RLEVRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAG------VDVTRAPPLARR 327 Query: 84 SRG---IARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVFRTGRYYHGERALVDEAM 140 G I L+ G S+ N+ ++ H + D RYY L +E + Sbjct: 328 RLGLGVIPEERLGHALVPGESIAFNIALSIH-----TARDGFIVDWRYY---EKLAEEMI 379 Query: 141 EFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLLDEPAAGMNPKETRALMDL 200 + I + R++ L G ++L + R L P LL+ PAAG++ + +A+ ++ Sbjct: 380 RDMGIKAV--SPRQMVDELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEM 437 Query: 201 IRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYG 235 +R ER +L+I+ D+ ++ V +I V G Sbjct: 438 MRMSSERGG--VLVIDEDLDFLLRVSNKIYVASGG 470 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 82.0 bits (201), Expect = 1e-17 Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 22/228 (9%) Query: 19 AVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFRGRRDEEPRDITDLK 78 A+ L++ GE++ ++GP+G+GKTT+ N++ G+ RP +GR++ G E + Sbjct: 29 ALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDG---FEVSSAGGEE 85 Query: 79 PHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVFRTGRYYHGERALVDE 138 + + FQ L+ + LEN+L+ P +L R Sbjct: 86 LRRFRLERVGYVFQQHNLIPTLTALENILL------PMALAGKANRL------------R 127 Query: 139 AMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLLDEPAAGMNPKETRALM 198 E L G+ GK R + L GEQ++L + ALA P +++ DEP ++ ++ Sbjct: 128 GQELLRRVGLGGKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIV 187 Query: 199 DLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEGDPESI 246 ++ T++L HD V + +R+ V++ GR+ P I Sbjct: 188 RILLEEAHSRGKTVVLTTHD-PRVARMADRVAVIEDGRLRGVYSPSRI 234 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 81.3 bits (199), Expect = 2e-17 Identities = 70/252 (27%), Positives = 111/252 (44%), Gaps = 36/252 (14%) Query: 1 MKSILEVRDLSISFGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGR 60 M +E R L FGG AV ++G+GE ++GPNG+GKTT+ M++G+ RP+ G Sbjct: 1 MGCTVEARGLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGS 60 Query: 61 ILFRGRRD-----EEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVP 115 + G E R + P +AR + +V+ +L Sbjct: 61 VRVCGYDVWGDGWREARGLIGFAPQ---DPPMARRMTGAEYI---TVVGGLL-------- 106 Query: 116 YSLLDAVFRTGRYYHGERALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALAT 175 L V R EA L + G E + L G++R L I ALA+ Sbjct: 107 -GLSPGVARR------------EARRVLEMLGFEDVLGRVVARLSGGQRRALGIALALAS 153 Query: 176 HPVLLLLDEPAAGMNPKETRALMDLIRFIRERF-SLTILLIEHDMSLVMNVCERIVVLDY 234 +P +++LDEP +G+ + RA L +R+ F T+L HD +R++++ Sbjct: 154 NPEVVVLDEPGSGL---DVRARESLWASLRKAFKGRTVLFSSHDPQEAEAESDRVLIMHR 210 Query: 235 GRIIAEGDPESI 246 GR+ A G P + Sbjct: 211 GRLAAWGKPREL 222 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 80.5 bits (197), Expect = 4e-17 Identities = 57/250 (22%), Positives = 110/250 (44%), Gaps = 25/250 (10%) Query: 17 LRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFRGRRDE----EPR 72 ++AVD ++ GE+ L+G +G GKTT + + + T GR+ F+ +++ E R Sbjct: 47 VKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERR 106 Query: 73 DITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVFRTGRYYHG- 131 + L + + R K + + + I Y + PY L+ F R Sbjct: 107 GVKSLGDGFVDLLAVPRR-------KFKPLRRELQIVY--QDPYGSLNPRFTIKRILEDP 157 Query: 132 -----------ERALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLL 180 +V +E + + L G+++++ I RA +P L+ Sbjct: 158 LLIHSIGNAREREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLV 217 Query: 181 LLDEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAE 240 + DEP + ++ +++L+ RE+ ++L I HD+++ +C+RI V+ G+I+ Sbjct: 218 VADEPVSMLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVET 277 Query: 241 GDPESIRRNP 250 GD I P Sbjct: 278 GDARRIIERP 287 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 79.0 bits (193), Expect = 1e-16 Identities = 64/271 (23%), Positives = 121/271 (44%), Gaps = 47/271 (17%) Query: 2 KSILEVRDLSISF----GGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRP- 56 + +L V DL F G ++AVD TL GE++G+ G +G+GK+T+ + G+ P Sbjct: 3 QELLVVEDLKTYFYTLRGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPP 62 Query: 57 ---TSGRILFRGRRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYR 113 GRI+ G +TS A + +R K V + + Sbjct: 63 GRIVGGRIMIDGM--------------DVTSMSEAELRRKVRWKKVSMVFQGAM------ 102 Query: 114 VPYSLLDAVFRTGRYYH---------GERALVDEAMEFLSIFGIEGKARELAQNLPY--- 161 ++L V+ GR G E L G+ R +A P+ Sbjct: 103 ---NVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELLESVGLH---RSIADRYPHELS 156 Query: 162 -GEQRKLEIVRALATHPVLLLLDEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMS 220 G+++++ I ALA P +++ DEP ++ +++L++ + +L+I+LI HD+S Sbjct: 157 GGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLKKLAWEKNLSIILITHDLS 216 Query: 221 LVMNVCERIVVLDYGRIIAEGDPESIRRNPE 251 ++ + E ++++ G+I G +++ P+ Sbjct: 217 VIAELAETVMIMYGGKIAEYGPSDAVFTKPQ 247 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 78.6 bits (192), Expect = 2e-16 Identities = 69/259 (26%), Positives = 112/259 (43%), Gaps = 30/259 (11%) Query: 5 LEVRDLSISFGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFR 64 + V DL++++ G + L LV +IGPNGAGKTT + G+ +P GR+ Sbjct: 3 VRVEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLD 62 Query: 65 GRRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVFR 124 G ++ + A P ++ + V Sbjct: 63 GFEATGRPEMVGRYAGYVPQNPSAPKLS----------------------PMTVREFV-E 99 Query: 125 TGRYYHGERALVDEAMEFLSIFGIEGKARELAQ-NLPYGEQRKLEIVRALATHPVLLLLD 183 T G + A+E L GI G+ E L G +++ I RA+A P +L++D Sbjct: 100 TSLRLRGVTRARERAVEVLHTLGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMD 159 Query: 184 EPAAGMNPKETRALMDLIR-FIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEGD 242 EP A ++P + +I RER +L+ HD SL++ + IVV++ +IA G Sbjct: 160 EPLASVDPAGRMEIARIIAGLARERL---VLMTSHDPSLLLGHTDIIVVINRD-LIASGP 215 Query: 243 PESIRRNPEVIKAYLGEEV 261 PE + R +V++ GE V Sbjct: 216 PEEVYRE-DVLRRVYGESV 233 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 75.9 bits (185), Expect = 1e-15 Identities = 65/265 (24%), Positives = 115/265 (43%), Gaps = 34/265 (12%) Query: 4 ILEVRDLSISF----GGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSG 59 I+EV +L + F G ++A++ + GE L+G G GK+ LT + P Sbjct: 9 IIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGR 68 Query: 60 RILFRGRRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLL 119 + + EP D+ ++ + +R ++G IAY ++ P + L Sbjct: 69 IVEGKIYYYPEPGRRVDI---------MSLDEKELRRIRGEE------IAYIFQDPSAAL 113 Query: 120 DAVFRTGRYYHGERALVDEAMEFLS-----IFGI---------EGKARELAQNLPYGEQR 165 D ++ G Y GE L + L G+ E + + L G ++ Sbjct: 114 DPLYTIG-YQVGETMLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQ 172 Query: 166 KLEIVRALATHPVLLLLDEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNV 225 + I +L+ P LL+ DEP ++ +MDL+ ++ LT+LLI H++ LV Sbjct: 173 RGVIGISLSNRPKLLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEY 232 Query: 226 CERIVVLDYGRIIAEGDPESIRRNP 250 C+R+ V+ G I+ E + + NP Sbjct: 233 CDRVAVMYAGNIVEEAPVDELFSNP 257 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 74.7 bits (182), Expect = 2e-15 Identities = 63/282 (22%), Positives = 130/282 (46%), Gaps = 39/282 (13%) Query: 4 ILEVRDLSISF----GGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSG 59 +L +RDL++++ G + A+D L + +GE++ ++G +G GK+T+ + Sbjct: 5 VLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIA-------- 56 Query: 60 RILFRGRRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSV-LENVLIAYHYRVPYSL 118 RIL P + K I + G T +RL + V + +++ ++ P + Sbjct: 57 RIL--------PSNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAA 108 Query: 119 LDAVFRTGR----YYHGERALVDE-AMEFLSIFGIEGKARELAQ---NLPYGEQRKLEIV 170 L V + + + GE+ V++ A E L + L + L G ++++ I Sbjct: 109 LSPVHKVKKQVTDHVSGEKRRVEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIA 168 Query: 171 RALATHPVLLLLDEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIV 230 +L T P +++ DEP ++ ++ ++ +RE TI+LI H++++ + +RI Sbjct: 169 ASLITRPRIIIADEPTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIA 228 Query: 231 VLDYGRIIAEGDPESIRRNP----------EVIKAYLGEEVE 262 V+ G ++ D S+ P + K ++ EE+E Sbjct: 229 VMYAGHVVEVADVFSLFERPLHPYTKGLLKSIPKPHVDEEIE 270 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 72.4 bits (176), Expect = 1e-14 Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 24/223 (10%) Query: 10 LSISFGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFRGRRDE 69 LS FG A + T G ++G++GPNGAGKTT+ + G+ +P++G IL G Sbjct: 10 LSKRFGQRYAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVEGVNPR 68 Query: 70 EPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVFRTGRYY 129 P F+ +LL + + + + P LL+ + R Y Sbjct: 69 SP------------------GFE--KLLPRIGYVPELPVVPLWTTPCILLETLARLEGYT 108 Query: 130 HGERALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLLDEPAAGM 189 E + A E L + G+ G+ L G ++++ + +A LL+LDEP +G+ Sbjct: 109 SVEARV--RAREALEVVGLAGECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGL 166 Query: 190 NPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVL 232 +P+ + +L+R + R T+++ H + + ++ ++VL Sbjct: 167 DPEWVYRVRELLRTV-AREGATVIVSSHILRELEDIATHVLVL 208 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 72.4 bits (176), Expect = 1e-14 Identities = 72/273 (26%), Positives = 118/273 (43%), Gaps = 51/273 (18%) Query: 1 MKSILEVRDLSISFGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGR 60 M ++EV L +G + A+ ++ GE+ G +GPNGAGKTT +L G RPTSG Sbjct: 1 MGVVIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGS 60 Query: 61 ILFRGRRDEEP-----RDITDLKPHQITSRGIARTFQNI----RLLKG--RSVLENVLIA 109 G P R P + G + + RL+ G R V+ +L A Sbjct: 61 ARVFGVELYNPGASGVRRRVGYVPGEFEFYGGVSGGRMLDYWCRLVGGCSRGVVRELLEA 120 Query: 110 YHYRVPYSLLDAVFRTGRYYHGERALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEI 169 + P L AV G Y G + + L + Sbjct: 121 F----PLPLERAV---GTYSRGMKQM-------------------------------LAL 142 Query: 170 VRALATHPVLLLLDEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERI 229 V A + P L+++DEP G++P ++D +R + R +T+ H +S V V +R+ Sbjct: 143 VMAFSHEPDLVVMDEPTTGLDPLARGRVLDFVR-SKAREGVTVFFSSHVLSEVQRVADRV 201 Query: 230 VVLDYGRIIAEGDPES-IRRNPEVIKAYLGEEV 261 +L G ++A D S +R++ +V+KA + + + Sbjct: 202 GLLRSGVLVALEDVSSLLRKSGKVVKARVSKNL 234 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 72.0 bits (175), Expect = 1e-14 Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 31/225 (13%) Query: 29 EGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFRGRRDEEPRDITDLKPHQITSRGIA 88 EGE+ +GPNGAGKTT +L+ + P G ++ + Sbjct: 37 EGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEA-------------------RVAGFDVV 77 Query: 89 RTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVFRTGRYY---HGERALVDEAMEFLSI 145 + +R K V+ +V +++++ + ++ GR Y GE L E L + Sbjct: 78 KERWEVR--KRIGVMLSVERGFYWKLTGR--ENLYYFGRIYGIPQGE--LKSRIKEVLDL 131 Query: 146 FGIE--GKARELAQNLPYGEQRKLEIVRALATHPVLLLLDEPAAGMNPKETRALMDLIRF 203 G+ G A + + + G + +L + R L P +L+LDEP G++P R + +IR Sbjct: 132 VGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRS 191 Query: 204 IRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEGDPESIRR 248 + TI + H+M + +R+ ++ GRI EG P+ ++R Sbjct: 192 LASE-GRTIFITTHNMVEAEMISDRVGIIIGGRIAMEGTPDELKR 235 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 70.9 bits (172), Expect = 3e-14 Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 32/235 (13%) Query: 26 TLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFRGRRDEEPRDITDLKP--HQIT 83 +L G LV L+GPNG+GKTT+ +L GI +P+ GR+ G R + P ++ Sbjct: 28 SLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEVCGSPPGRVRRMLGYAPASPEVD 87 Query: 84 SRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVFRTGRYYHGERALVDEAMEFL 143 R L+ V +A YR Y + + V R + +E + L Sbjct: 88 PR-----------------LKAVEVALLYR--YGVSEGVAWGRRDW-------EEVLAAL 121 Query: 144 SIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLLDEPAAGMNPKETRALMDLIRF 203 G+ A L G++R + + LA P L LLDEP + ++ R + ++R Sbjct: 122 GEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRS 181 Query: 204 IRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEGDPESIRRNPEVIKAYLG 258 +R R TI+ HD L + +++L G + A+G PE++ PE I+ G Sbjct: 182 LRGR--ATIVYTTHD-PLAAMAADSVIMLREGLLHAQGPPEAV-VTPETIEEVYG 232 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 69.3 bits (168), Expect = 9e-14 Identities = 59/205 (28%), Positives = 88/205 (42%), Gaps = 36/205 (17%) Query: 1 MKSILEVRDLSISFGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGR 60 M ++L + ++ GG + L LG GE V + G NG+GKTT+ + G+ P+ GR Sbjct: 1 MAALLRLENVWKMLGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGR 60 Query: 61 ILFRGRRDEEPRDITDLKPHQITSRGIARTFQNIRL---LKGRSVLENVLIAYHYRVPYS 117 + + R PR H G ++N+ L G S+ Sbjct: 61 VSWGCPRG--PRGCVGYVGHTPMVYGDLTVWENVEFFSSLHGGSL--------------- 103 Query: 118 LLDAVFRTGRYYHGERALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHP 177 G+ L EA L G+E LA L +G +R+L++VRAL P Sbjct: 104 -------------GDYPLAAEAWRLL---GLEKYGSHLASQLSFGWRRRLDVVRALLGEP 147 Query: 178 VLLLLDEPAAGMNPKETRALMDLIR 202 LLLLDE G++ + AL L+R Sbjct: 148 RLLLLDEAFTGLDQGASEALSRLLR 172 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 68.2 bits (165), Expect = 2e-13 Identities = 69/259 (26%), Positives = 113/259 (43%), Gaps = 43/259 (16%) Query: 12 ISFGGLR-AVDHFRLTLGEG-----ELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFRG 65 + + GLR A+D F LT GEG E++G+ GPNG GKTT L G +P G + Sbjct: 359 VGWTGLRVALDGFTLTSGEGALYGGEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVY--- 415 Query: 66 RRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVFRT 125 E+ R KP I+ + + +E VL A + A+ Sbjct: 416 PYVEDLR--VSYKPQYISPESLP-----------DATVEQVLKAAN--------PAILAP 454 Query: 126 GRYYHGERALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLLDEP 185 G + + +E + ++ + L GE +K+ + ALA + LLDEP Sbjct: 455 GSWLN---------LELVKRMRLDKLLERRVRTLSGGELQKVAVAAALAREADVYLLDEP 505 Query: 186 AAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEG---D 242 +A ++ +E + IR I E L++EHD+ ++ V +RI+++ G G D Sbjct: 506 SAYLDVEERVGVARAIRRIVETREAAALVVEHDLMILDYVSDRIMLVT-GEPGVRGHVDD 564 Query: 243 PESIRRNPEVIKAYLGEEV 261 P ++ ++ LG V Sbjct: 565 PRPVKEGMNLLLQNLGVTV 583 Score = 57.4 bits (137), Expect = 4e-10 Identities = 72/261 (27%), Positives = 119/261 (45%), Gaps = 21/261 (8%) Query: 5 LEVRDLSISFGGLRAVDHFRLTLG-EGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILF 63 +E+ + ++ G+ FRL + EG++VGL+G NG GKTT +L G +P GR+ Sbjct: 80 MELEEEAVHRYGVNGFKLFRLPIPREGQVVGLLGRNGTGKTTALRILAGELKPNLGRV-- 137 Query: 64 RGRRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVF 123 EP LK RG +L+ G+ + + I Y VP L V Sbjct: 138 ---EGGEPEWDEILK----RFRGSELQTYFRKLVDGKLRVAH-KIQYVELVPRRLKGRV- 188 Query: 124 RTGRYYHGERALVDEAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLLD 183 R ER + A+E G++ + L GE +K+ IV L+ + + D Sbjct: 189 RDLLKRADERGV---ALELAEQVGLDKVFDRDVRQLSGGELQKMLIVAVLSRDANVYIFD 245 Query: 184 EPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEG-- 241 EP++ ++ +E + LI R ++++EHD++++ V + + +L YG A G Sbjct: 246 EPSSYLDIRERMRMARLIAG-AARPGAYVMVVEHDLAVLDYVSDLVHIL-YGEPGAYGIV 303 Query: 242 -DPESIRRNPEV-IKAYLGEE 260 P S R V ++ YL E Sbjct: 304 SKPYSTREGINVFLQGYLPAE 324 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 67.8 bits (164), Expect = 3e-13 Identities = 58/251 (23%), Positives = 116/251 (46%), Gaps = 18/251 (7%) Query: 5 LEVRDLSISFGGLRAVDHFRLTLGEGELVGLIGPNGAGKTTVFNMLTG--IYRPTSGRIL 62 LEV+ L+ G ++ L GE+ ++GPNG+GK+++ ++ G IY G IL Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 63 FRGRRDEEPRDITDLKPHQITSRGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAV 122 G I +L P + +GI Q+ + G + ++ + R+ L Sbjct: 63 LDGE------SIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKP 116 Query: 123 FRTGRYYHGERALVDEAMEFLSIFGIEGKA--RELAQNLPYGEQRKLEIVRALATHPVLL 180 + +V E+ + G++ + RE+ GE+++ E+++A+ P ++ Sbjct: 117 --------ADPKIVKRMYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIV 168 Query: 181 LLDEPAAGMNPKETRALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAE 240 +LDEP +G++ + + + I+ +R+ +L+ + L +R+ VL G ++A Sbjct: 169 ILDEPDSGLDIDGLKIVAEFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGSVLAR 228 Query: 241 GDPESIRRNPE 251 G E R+ E Sbjct: 229 GGAELARQVEE 239 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 65.1 bits (157), Expect = 2e-12 Identities = 61/248 (24%), Positives = 114/248 (45%), Gaps = 41/248 (16%) Query: 30 GELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFRGRRDEEPRDITDLK-----PHQITS 84 G + ++GP+G+GK+T+ ++ + L G R E I ++ P+ I Sbjct: 31 GTVTAIMGPSGSGKSTLIRVINRLID------LIPGARVEGEVWINNMNVMKEDPYNIR- 83 Query: 85 RGIARTFQNIRLLKGRSVLENVLIAYHYRVPYSLLDAVFRTGRYYHG---ERALVDEAME 141 R FQ ++ ENV I G HG + +DE +E Sbjct: 84 RYTGMVFQEPNPFPHMTIYENVAI-----------------GPKLHGLAKNKKELDEIVE 126 Query: 142 F-LSIFGIEGKARELAQNLPY----GEQRKLEIVRALATHPVLLLLDEPAAGMNPKET-R 195 + L + + + ++ + P+ G++++L + RALA P +LLLDEP A ++P T + Sbjct: 127 WALKMAHLWDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVK 186 Query: 196 ALMDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEGDPESIRRNP--EVI 253 ++ + +E + T++++ H + ++I+ L GR+I G + + P E+ Sbjct: 187 IEQSIVEYAKEEMA-TVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELVLRPRHELT 245 Query: 254 KAYLGEEV 261 K +LG EV Sbjct: 246 KKFLGGEV 253 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 61.2 bits (147), Expect = 3e-11 Identities = 66/244 (27%), Positives = 108/244 (44%), Gaps = 37/244 (15%) Query: 25 LTLGEGELVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFRGRRDEEPRDITDLKPHQITS 84 L++ GE+ L G NGAGKTT +L G+ SG G + P Sbjct: 35 LSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLG-----------VDPW---G 80 Query: 85 RGIARTFQNIRLL-KGRSVLENVLIAYHYRVPYSLLDAVFRTGRYYHGERALVDEAME-- 141 G R + L + SV E + + ++ + R Y G R V+E +E Sbjct: 81 GGFERVKGEVGYLPEDASVYERL----------TGMENILFYARLYSGWRD-VEELVENA 129 Query: 142 -FLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLLDEPAAGMNPKETRALMDL 200 F S E AR A G +R+L + L + P L++LDEP +G++P + + + Sbjct: 130 VFYSGLSREDLARR-AGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKI 188 Query: 201 IRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEGDPESIRRNPEVIKAYLGEE 260 +R + R IL+ HD++L + +R+ ++ G +A G P +++ Y GE Sbjct: 189 LRGL-SREGRAILVTTHDLALAEEIADRVTIIHGGSTVASGPPY------RLVEEYCGET 241 Query: 261 VEIA 264 +E A Sbjct: 242 LEDA 245 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 55.5 bits (132), Expect = 1e-09 Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 46/217 (21%) Query: 32 LVGLIGPNGAGKTTVFNMLTGIYRPTSGRILFRGRRDEEPRDITDLKPHQITSRGIARTF 91 + ++G NG+GKTT+ + + +P G + E PR + Sbjct: 18 VTAILGANGSGKTTLLKLAARLLKPDRGSV-------EGPRRVG---------------- 54 Query: 92 QNIRLLKGRSVLENVLIAYHYRVPYSLLDAVFRTGRYYHGERALVDEAMEFLSIFGIEGK 151 + L+N + + + ++ + + RT G R EA++ L G+E Sbjct: 55 ---------AALQNPYLGF---LGPTVAEDLARTA----GGRG---EALKLLREAGLEYA 95 Query: 152 ARELAQNLPYGEQRKLEIVRALATHPVLLLLDEPAAGMNPKETRALMDLIRFIRERFSLT 211 + L GE R L ++ A++ P +++DEP +G++ R L LI R + Sbjct: 96 SERSPYTLSMGEARILSVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLI----ARLGVP 151 Query: 212 ILLIEHDMSLVMNVCERIVVLDYGRIIAEGDPESIRR 248 +L+ HD+ V V+L GR+ GD E + R Sbjct: 152 VLVAGHDIDFAAAVAGWAVILRDGRVRVSGDMERVLR 188 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 40.4 bits (93), Expect = 5e-05 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 3/109 (2%) Query: 138 EAMEFLSIFGIEGKARELAQNLPYGEQRKLEIVRALATHPVLLLLDEPAAGMNPKETRAL 197 EA+ GIE L GE++++ I ALA +LL+DEP A +P + Sbjct: 108 EAVRLAEELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDP---LGV 164 Query: 198 MDLIRFIRERFSLTILLIEHDMSLVMNVCERIVVLDYGRIIAEGDPESI 246 LIR +R +++ EH + ++ + ++ GR G E++ Sbjct: 165 ESLIRLLRRLDVEGVVVAEHRVHYLLPAASSVYLVYDGRAKQLGPGEAV 213 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.143 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 277,490 Number of Sequences: 1700 Number of extensions: 12868 Number of successful extensions: 164 Number of sequences better than 1.0e-04: 40 Number of HSP's better than 0.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 56 length of query: 264 length of database: 492,079 effective HSP length: 75 effective length of query: 189 effective length of database: 364,579 effective search space: 68905431 effective search space used: 68905431 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719581|ref|YP_003875113.1| transporter [Spirochaeta thermophila DSM 6192] (331 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431912|ref|NP_148668.2| branched-chain amino acid ABC tran... 134 2e-33 gi|118431403|ref|NP_147858.2| ABC transporter permease [Aeropyru... 127 4e-31 gi|118431911|ref|NP_148667.2| branched-chain amino acid ABC tran... 76 1e-15 gi|118431260|ref|NP_147600.2| branched-chain amino acid ABC tran... 70 6e-14 gi|118431931|ref|NP_148709.2| ABC transporter permease [Aeropyru... 50 8e-08 gi|14601073|ref|NP_147599.1| branched-chain amino acid ABC trans... 46 1e-06 gi|14601324|ref|NP_147859.1| ABC transporter permease [Aeropyrum... 41 4e-05 gi|118430861|ref|NP_146935.2| ABC transporter permease [Aeropyru... 41 5e-05 >gi|118431912|ref|NP_148668.2| branched-chain amino acid ABC transporter permease [Aeropyrum pernix K1] Length = 309 Score = 134 bits (338), Expect = 2e-33 Identities = 88/292 (30%), Positives = 147/292 (50%), Gaps = 26/292 (8%) Query: 34 YTAQVITLSGINVIVALGLNLITGFTGQLAIGHAGFMAVGAYTSALTMMLLGFPPVLGVI 93 + +I LS + I A+ NL+ G+TG ++GHA F VG YT + + P +G+ Sbjct: 17 FYVNMIFLSLMYGISAMAWNLLMGYTGLFSLGHAVFFGVGGYTVIVLALRYNVTPWIGLP 76 Query: 94 SGGLLAAVVGMLIGFPTFRLRGDYLAIVTLAFGEVIRVIIINLPSLTGGAAGLKGVPPFA 153 GL AA++ + P RLR + + T+A GE+ R+ + G +AGL+ P + Sbjct: 77 VAGLTAAMLAAALSPPLLRLRSHWFTLATIALGEIFRLSFAHW-DYVGASAGLQ--MPIS 133 Query: 154 E---------GRMLKQIVAMDVVLVFMFLVIALMYTVVRSSYGRALIAIRDDEIAAHTMG 204 E G + +AM ++ V + ++ ++ S G + IR+DE+ A T+G Sbjct: 134 ERSIYYVQFAGATVYSYIAMAILAV----ELLFLWKIINSKTGFYMQTIREDELVAQTLG 189 Query: 205 IDVFGYKMFSFTLSAFIAGLGGGLYAPFFGYLTPQTFTFLKSVEILIIV--VFGGMGSIT 262 I+ F YK S +SAF GL GGLYA F Y+ P L ++ I + + GG+ + Sbjct: 190 INTFNYKALSLVISAFFTGLAGGLYAMRFRYVDPFAVFDLITISTYIAIAGIIGGIYTFL 249 Query: 263 GTVVAGFLLTSLQEFLR------FLKDY--RMVIYPLILIVMMLFRPQGLFG 306 G V F+ + E++R F + Y + + +IL+++ LF P+G+ G Sbjct: 250 GPQVGSFIFVPISEYVRANIVQAFPRVYGLHVAVLGVILLLISLFAPEGVLG 301 >gi|118431403|ref|NP_147858.2| ABC transporter permease [Aeropyrum pernix K1] Length = 345 Score = 127 bits (319), Expect = 4e-31 Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 12/264 (4%) Query: 12 AGLSIVVVAAVTALVRSGLTTLYTAQVITLSGINVIVALGLNLITGFTGQLAIGHAGFMA 71 A L + VVAAV A G Y ++ + I I A+GLN+ G GQ+++ HA M Sbjct: 24 AALILAVVAAVAAPFVIGK---YYLNLLVVMMIFWIAAIGLNITLGLAGQISLAHAALMG 80 Query: 72 VGAYTSALTMMLLGFPPVLGVISGGLLAAVVGMLIGFPTFRLRGDYLAIVTLAFGEVIRV 131 +GAYT A + LG V + GL AA++G+++ P+FRL+ YLA+ +LA ++ Sbjct: 81 IGAYTVANAALHLGVNSVAILPIAGLAAALLGIILSLPSFRLKEYYLAMASLAAQLILEY 140 Query: 132 IIINLPSLTGGAAGLKGVPPFAE---GRMLKQIVAMDVVLVFMFLVIAL-MYTVVRSSYG 187 + + VPP + G L + A+ ++ + +V+AL + RSS G Sbjct: 141 VYSRI-----DPDQYTPVPPETKTLLGISLTEPTALYYFILAITVVMALAAANIGRSSLG 195 Query: 188 RALIAIRDDEIAAHTMGIDVFGYKMFSFTLSAFIAGLGGGLYAPFFGYLTPQTFTFLKSV 247 RA+ A+RD+++A+ +GI+V K +F + F AG+ GGLYA + + + FT + S+ Sbjct: 196 RAMKAVRDNDVASEAIGINVQLVKATAFAIGGFYAGVAGGLYAIYSSGIGWEGFTLVNSI 255 Query: 248 EILIIVVFGGMGSITGTVVAGFLL 271 E+L +V+ GG G + + G L+ Sbjct: 256 ELLGMVLIGGPGRVVWGSLLGVLV 279 >gi|118431911|ref|NP_148667.2| branched-chain amino acid ABC transporter permease [Aeropyrum pernix K1] Length = 289 Score = 75.9 bits (185), Expect = 1e-15 Identities = 78/302 (25%), Positives = 137/302 (45%), Gaps = 30/302 (9%) Query: 21 AVTALVRSGLTTLYTAQVITLSGINVIVALGLNLITGFTGQLAIGHAGFMAVGAYTSALT 80 AVT+ + GL + G +VA+GL +I G + H FM +GA + Sbjct: 5 AVTSAIVDGLL---------IGGAYALVAMGLAMIWGVMEIINFAHGDFMMLGALAAYYA 55 Query: 81 MMLLGFPPVLGVISGGLLAAVVGMLIGFPTFR------LRGDYLAIVTLAFGEVIRVIII 134 L+G P ++GG+LA V+ +G R L L + F V+ +I Sbjct: 56 FTLMGLDP----LAGGVLAFVMVFALGVGVQRGVINRILDAPLLTQIAATFA-VLLIIRY 110 Query: 135 NLPSLTGGAAG--LKGVPPFAEGRMLKQIVAMDVVLVFM--FLVIALMYTVV-RSSYGRA 189 + ++ G + + G + V + +L+F+ +++AL+Y ++ R+ G A Sbjct: 111 GVQAVLGPYTRRLVTWYQDYYVG-LGFTTVPLSKLLIFLVSLVILALLYILLNRTDMGIA 169 Query: 190 LIAIRDDEIAAHTMGIDVFGYKMFSFTLSAFIAGLGGGLYAPFFGYLTPQTFTFLKSVEI 249 + A + + A MGI+V +F + +A +GG L A F+ + P+ F + Sbjct: 170 IRATSQNRMVAQLMGINVSRVYDVTFGIGVGVAAVGGALVALFYP-IFPEMGGFFALI-A 227 Query: 250 LIIVVFGGMGSITGTVVAGFLL--TSLQEFLRFLKDYRMVIYPLILIVMMLFRPQGLFGE 307 I VV GG G++ G V G ++ T L + V+ L+ I++++ +P GLFG Sbjct: 228 FIAVVLGGFGNVYGAYVGGLIIGVTESVSALFIEPALKDVVAFLLFILIIMIKPTGLFGR 287 Query: 308 RE 309 E Sbjct: 288 GE 289 >gi|118431260|ref|NP_147600.2| branched-chain amino acid ABC transporter permease [Aeropyrum pernix K1] Length = 387 Score = 70.5 bits (171), Expect = 6e-14 Identities = 85/362 (23%), Positives = 137/362 (37%), Gaps = 76/362 (20%) Query: 38 VITLSGINVIVALGLNLITGFTGQLAIGHAGFMAVGAYT-----SALTMMLLGFPP---- 88 ++ + ++ LNL G TG G A F AVG + + L G P Sbjct: 13 IVAYVAVYYVLTSSLNLKAGVTGIPDFGQAMFFAVGGIVVGNLAARIAAALAGMDPSLVI 72 Query: 89 --------------------------VLGVISGGLLAAVVGMLIGFPTFRLRGDYLAIVT 122 V+ + S L ++G+L +P RLRGDYLAI+ Sbjct: 73 AENTTTLEVLNSEFFPNRPLESIAILVVAIASALALGGLLGLLASYPALRLRGDYLAIML 132 Query: 123 LAFGEVIRVIIINLPSLTGG--AAGLKGVPPFAEGRMLKQIVAMDVVLVFMFLVIALMYT 180 L E +R+ L G GL +P + ++ + L V M Sbjct: 133 LVTAEALRIYTTYSVWLMGSTPTVGLT-LPSLLAWTGDPGLASILLTLAIAVAVYIYMER 191 Query: 181 VVRSSYGRALIAIRDDEIAAHTMGIDVFGYKMFSFTLSAFIAGLGGGLYAPFFGYLTPQT 240 + S GR + A+RDDE A+ +G DV + + + + +A L G LY+ L + Sbjct: 192 LYNSPAGRLMRAVRDDEDASKALGKDVAKVRRNAMVVGSALAALAGVLYS-INPLLAGSS 250 Query: 241 FTFLKSVEILI-------IVVFGGMGS---------ITGTVVAGFLLTSLQEFLRFLKDY 284 + + ++ +++ GGM S +TG + G + E R L+ Sbjct: 251 VAAVSIFDRMLWTFWPWALMILGGMSSNRGVAIASVVTGAAILGPIRLYKAELARLLRVD 310 Query: 285 RM--------------VIYPLILIVMMLFRPQGLFGE------REISISSLFRKAGGKRA 324 + +I PLIL ++ L RPQG+ E E I + + G+ Sbjct: 311 ALGFDTDKFAAGLEFILIGPLILAILFL-RPQGIIPEPPSRTLPEKDIEEIKARTAGQTG 369 Query: 325 SE 326 SE Sbjct: 370 SE 371 >gi|118431931|ref|NP_148709.2| ABC transporter permease [Aeropyrum pernix K1] Length = 304 Score = 50.1 bits (118), Expect = 8e-08 Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 5/250 (2%) Query: 24 ALVRSGLTTLYTAQVITLSGINVIVALGLNLITGF-TGQLAIGHAGFMAVGAYTSALTMM 82 ALV L L + ++ S + I + I G + IG G M A+ + + Sbjct: 2 ALVEVVLEDLTSLALLAASAMVPITLASIGEIASERAGIVNIGLEGIMLASAWAAVAVYI 61 Query: 83 LLGFPPVLGVISGGLLAAVVGMLIGFPTFRLRGDYLAIVTLAFGEVIRVIIINLPSLTGG 142 L G+ P+ G + G LL +G+L G + L+GD + ++ L G Sbjct: 62 LTGWGPLAGYLLGALLGLSIGVLHGVVSVYLKGDQIVTGVGLNIFSAGATVVGTYMLWGT 121 Query: 143 AAGLKGVPPFAEGRMLKQIVAMDVVLVFMFLVIALMYTVVRSSYGRALIAIRDDEIAAHT 202 + V P G ++ + +V + + + + + R+ G L + +D +A Sbjct: 122 FSNSPPVEPM-PGFVIAGVRISPMVPLSLAAGVIVWLFLYRTIAGLRLRSCGEDPRSAEA 180 Query: 203 MGIDVFGYKMFSFTLSAFIAGLGGGLYAPFFGYLTPQTFTFLKSVEILIIVVFGG---MG 259 MG++V Y++ + + +AGL G + + + + T + L V F G + Sbjct: 181 MGVNVALYQVAAAGFAGLMAGLAGAYLSIDYQGVFAKNMTAGRGFIALANVAFSGWNPLA 240 Query: 260 SITGTVVAGF 269 ++ G V GF Sbjct: 241 ALLGGYVFGF 250 >gi|14601073|ref|NP_147599.1| branched-chain amino acid ABC transporter permease [Aeropyrum pernix K1] Length = 354 Score = 46.2 bits (108), Expect = 1e-06 Identities = 72/328 (21%), Positives = 136/328 (41%), Gaps = 62/328 (18%) Query: 38 VITLSGINVIVALGLNLITGFTGQLAIGHAGFMAVGAYTSALTMML-------------- 83 ++ SG+ +++LG+ L T H VGAY +A +M L Sbjct: 10 MLAYSGVIALLSLGITLAYITTRVFNFAHPRIANVGAYAAAASMALYVDLVRDEGIGRFK 69 Query: 84 --LGFPPVLGVIS------GGLLAAVVGMLIGFPTFRL-------RG-DY--LAIVTLAF 125 LG V G+++ G + A + G++ + L RG D+ L I TLAF Sbjct: 70 VSLGPLEVTGLVAPDVLAVGIVFAVIAGIITALAEYYLVLRPLIERGADFLKLMIATLAF 129 Query: 126 GEVIRVII------INLPSLTGGAAGLKGVP---PFAEGRMLKQIVAMDV--VLVFMF-- 172 + + I++ L G G + + R+ ++ + +++F F Sbjct: 130 DFFVIATLFILGTHISVKELVSGVFGRETTSLSLHAFDARIDLAVLGYKLRGIMLFSFLG 189 Query: 173 -LVIALMYTVV--RSSYGRALIAIRDDEIAAHTMGIDVFGYKMFSFTLSAFIAGLGGGLY 229 L IALM ++ ++ G + A ++ A +GI+V ++ +S AG G L Sbjct: 190 SLAIALMLYILLFKTKLGVKMRASIENPSLAEVLGINVQQVYTIAWIISGATAGFAGFLI 249 Query: 230 APFFGYLTPQTFTFLKSVEILIIV----VFGGMGSITGTVVAGFLLTSLQEFLRF----- 280 F G + + EI++ + GG+ S+ G++ GF++ +++ + Sbjct: 250 L-FMGDIVKPVTASSPADEIIVSAFAGSIVGGVNSVFGSIGGGFIIGAVEILISSVITDV 308 Query: 281 ----LKDYRMVIYPLILIVMMLFRPQGL 304 + Y ++ L + + +LF PQGL Sbjct: 309 TGIDVTRYNKMLSMLAVALTLLFAPQGL 336 >gi|14601324|ref|NP_147859.1| ABC transporter permease [Aeropyrum pernix K1] Length = 294 Score = 41.2 bits (95), Expect = 4e-05 Identities = 59/283 (20%), Positives = 115/283 (40%), Gaps = 34/283 (12%) Query: 47 IVALGLNLITGFTGQLAIGHAGFMAVGAYTSALTMMLLGFPPVLGVISGGLLAAV-VGM- 104 ++ALG N++ + + + AY + + + G +L ++ L A++ V M Sbjct: 24 LIALGYNIVYRVNKSINFAVPEVVLLAAYLAWIASIATG--NLLAAVAIALAASIAVSMA 81 Query: 105 --------LIGFPTFRLRGDYLAIVTLAFGEVIRVIIINLPSLTGGAAGLKGVPPFAEGR 156 L+G P L G L + + G V+ V G + +P + E Sbjct: 82 MERFVAKPLLGRPPIALIGATLGLFYMLKGVVLIV----------GKGEVAVLPFYPEVY 131 Query: 157 MLKQIVAMDVVLVFMFLVIALMYTVV----RSSYGRALIAIRDDEIAAHTMGIDVFGYKM 212 L + ++ + IA++ ++ ++S+G A+ + +D A G+ V + Sbjct: 132 RLGFLTLGTNDVIALLGSIAVLAGIIVLHRKTSFGAAMRGVAEDAEGAAAYGLPVRRLML 191 Query: 213 FSFTLSAFIAGLGGGLYAPFFGYLTPQTFTFLKSVEILIIVVFGGMGSITGTVVAGFLLT 272 + L+ ++GL L ++P F ++ L + G+ S+ G VV G L Sbjct: 192 AGWALAGLVSGLAA-LLLSIKTQVSPDLEFF--AIIALAASLIAGLDSLGGIVVGGVFLG 248 Query: 273 SLQEFLR-----FLKDYRMVIYPLILIVMMLFRPQGLFGEREI 310 ++ +L I IL +++L +P GLFG I Sbjct: 249 LAEQIASKTLDPYLPGIGRDIAFFILFLVLLVKPYGLFGSERI 291 >gi|118430861|ref|NP_146935.2| ABC transporter permease [Aeropyrum pernix K1] Length = 277 Score = 40.8 bits (94), Expect = 5e-05 Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 14/177 (7%) Query: 59 TGQLAIGHAGFMAVGAYTSALTMMLLGFPPVLGVISGGLLAAVVGMLIGFPTFRLRGDYL 118 TG++ +G G MAVGA AL + G +L ++ G LA VG L ++ + D L Sbjct: 25 TGRVNLGVDGLMAVGAAVGALAGVETG--SLLAGLAAGALAGGVGSL----SYIILTDRL 78 Query: 119 AIVTLAFGEVIRVIIINLPSLTGGAAGLKGVPPFAEGRMLKQIVAMDVVLVFMFLVIALM 178 + + G ++ I L L G + + G P + + + V + L+ + Sbjct: 79 GVNMIVAGLLVFFAGIGLGDLVG--SKIAGRPGPVLTSLYTTAATIGIAAVALHLI---L 133 Query: 179 YTVVRSSYGRALIAIRDDEIAAHTMGIDVFGYKMFSFTLSAFIAGLGGGLYAPFFGY 235 Y V G AL + ++ AA G+ V+ ++ + + AGL G + Y Sbjct: 134 YNTVT---GTALRVVGENPAAAKERGVPVWRLRLSAALVQGLSAGLAGYIMVAGLSY 187 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.146 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 353,214 Number of Sequences: 1700 Number of extensions: 16498 Number of successful extensions: 101 Number of sequences better than 1.0e-04: 8 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 85 Number of HSP's gapped (non-prelim): 9 length of query: 331 length of database: 492,079 effective HSP length: 77 effective length of query: 254 effective length of database: 361,179 effective search space: 91739466 effective search space used: 91739466 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719582|ref|YP_003875114.1| hypothetical protein STHERM_c19060 [Spirochaeta thermophila DSM 6192] (299 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431911|ref|NP_148667.2| branched-chain amino acid ABC tran... 121 2e-29 gi|14601324|ref|NP_147859.1| ABC transporter permease [Aeropyrum... 78 2e-16 gi|14601073|ref|NP_147599.1| branched-chain amino acid ABC trans... 42 2e-05 >gi|118431911|ref|NP_148667.2| branched-chain amino acid ABC transporter permease [Aeropyrum pernix K1] Length = 289 Score = 121 bits (303), Expect = 2e-29 Identities = 83/266 (31%), Positives = 126/266 (47%), Gaps = 9/266 (3%) Query: 30 MIYGIIKLINFAHGDILMLGTFMAYFVLMVTGPTPL-GLVLAFLVAMPGSAILGMIIERF 88 MI+G++++INFAHGD +MLG AY+ + G PL G VLAF++ LG+ ++R Sbjct: 29 MIWGVMEIINFAHGDFMMLGALAAYYAFTLMGLDPLAGGVLAFVMVFA----LGVGVQRG 84 Query: 89 AYKPLRNAPRINALITAIGVSLFLENLARVLPFIGPNPRQFPT-PPSVFLSYGGVGXXXX 147 + +AP + + V L + + + +GP R+ T ++ G Sbjct: 85 VINRILDAPLLTQIAATFAVLLIIRYGVQAV--LGPYTRRLVTWYQDYYVGLGFTTVPLS 142 Query: 148 XXXXXXXXXXXXXXXXXXXERTKVGKAMRAVSYDKPASALMGIDVNRVIXXXXXXXXXXX 207 RT +G A+RA S ++ + LMGI+V+RV Sbjct: 143 KLLIFLVSLVILALLYILLNRTDMGIAIRATSQNRMVAQLMGINVSRVYDVTFGIGVGVA 202 Query: 208 XXXXXXXXXXYPLIEPYMGIMPGLKAFVAAVLGGIGSIPGAMVGGFIMGLAETYTKGFIN 267 YP+ P MG L AF+A VLGG G++ GA VGG I+G+ E+ + FI Sbjct: 203 AVGGALVALFYPIF-PEMGGFFALIAFIAVVLGGFGNVYGAYVGGLIIGVTESVSALFIE 261 Query: 268 SQLADAIAFGXXXXXXXVKPSGLFGK 293 L D +AF +KP+GLFG+ Sbjct: 262 PALKDVVAFLLFILIIMIKPTGLFGR 287 >gi|14601324|ref|NP_147859.1| ABC transporter permease [Aeropyrum pernix K1] Length = 294 Score = 78.2 bits (191), Expect = 2e-16 Identities = 70/279 (25%), Positives = 114/279 (40%), Gaps = 24/279 (8%) Query: 30 MIYGIIKLINFAHGDILMLGTFMAYFVLMVTGPTPLGLVLAFLVAMPGSAILGMIIERFA 89 ++Y + K INFA ++++L ++A+ + TG L+ A +A+ S + M +ERF Sbjct: 31 IVYRVNKSINFAVPEVVLLAAYLAWIASIATG----NLLAAVAIALAASIAVSMAMERFV 86 Query: 90 YKPLRNAPRINALITAIGVSLFLENLARVLPFIGPNP-RQFPTPPSVFLSYGGVGXXXXX 148 KPL P I + +G+ L+ V+ +G P P V+ G + Sbjct: 87 AKPLLGRPPIALIGATLGLFYMLKG---VVLIVGKGEVAVLPFYPEVY-RLGFLTLGTND 142 Query: 149 XXXXXXXXXXXXXXXXXXERTKVGKAMRAVSYDKPASALMGIDVNRVIXXXXXXXXXXXX 208 +T G AMR V+ D +A G+ V R++ Sbjct: 143 VIALLGSIAVLAGIIVLHRKTSFGAAMRGVAEDAEGAAAYGLPVRRLMLAGWALAGLVSG 202 Query: 209 XXXXXXXXXYPLIEPYMGIMPGLK-----AFVAAVLGGIGSIPGAMVGGFIMGLAETYTK 263 L+ + P L+ A A+++ G+ S+ G +VGG +GLAE Sbjct: 203 LAAL-------LLSIKTQVSPDLEFFAIIALAASLIAGLDSLGGIVVGGVFLGLAEQIAS 255 Query: 264 GFINSQLADA---IAFGXXXXXXXVKPSGLFGKETSEKV 299 ++ L IAF VKP GLFG E E++ Sbjct: 256 KTLDPYLPGIGRDIAFFILFLVLLVKPYGLFGSERIERL 294 >gi|14601073|ref|NP_147599.1| branched-chain amino acid ABC transporter permease [Aeropyrum pernix K1] Length = 354 Score = 42.0 bits (97), Expect = 2e-05 Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 4/96 (4%) Query: 168 RTKVGKAMRAVSYDKPASALMGIDVNRVIXXXXXXXXXXXXXXXXXXXXXYPLIEPYMGI 227 +TK+G MRA + + ++GI+V +V +++P Sbjct: 203 KTKLGVKMRASIENPSLAEVLGINVQQVYTIAWIISGATAGFAGFLILFMGDIVKPVTAS 262 Query: 228 MPG----LKAFVAAVLGGIGSIPGAMVGGFIMGLAE 259 P + AF +++GG+ S+ G++ GGFI+G E Sbjct: 263 SPADEIIVSAFAGSIVGGVNSVFGSIGGGFIIGAVE 298 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.144 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 245,094 Number of Sequences: 1700 Number of extensions: 9312 Number of successful extensions: 63 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 3 length of query: 299 length of database: 492,079 effective HSP length: 76 effective length of query: 223 effective length of database: 362,879 effective search space: 80922017 effective search space used: 80922017 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719583|ref|YP_003875115.1| hypothetical protein STHERM_c19070 [Spirochaeta thermophila DSM 6192] (389 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431910|ref|NP_148666.2| branched-chain amino acid ABC tran... 110 8e-26 gi|14601070|ref|NP_147596.1| branched-chain amino acid ABC trans... 93 1e-20 gi|118431107|ref|NP_147326.2| hypothetical protein APE_0558.1 [A... 51 6e-08 >gi|118431910|ref|NP_148666.2| branched-chain amino acid ABC transporter substrate-binding protein [Aeropyrum pernix K1] Length = 427 Score = 110 bits (274), Expect = 8e-26 Identities = 94/324 (29%), Positives = 147/324 (45%), Gaps = 42/324 (12%) Query: 22 GGGEKT-IKVGVIMPTSGTLSTYGVDTTNAIKLAAEEINAAGGVN---GVPIEVIVEDDE 77 GGGE + IK+GVI+P SG L+ G D I+ A +EIN+ GGV G + V+ D Sbjct: 29 GGGEVSEIKIGVILPLSGRLAETGADLRRGIEFAVDEINSQGGVKACGGAKLTVVYGDSA 88 Query: 78 GNPEKTKAAYLKLVTQDNVAAIVGPLTSNCTLAVVDSAQSDQVPLITPTATNDQVTLAG- 136 G PE A +L++Q+ V A+VG S+ T + A+ QVP I P +T+ +T G Sbjct: 89 GKPETGAAEAERLISQEGVIALVGAYQSSVTKTASEVAERYQVPFINPDSTSPALTERGY 148 Query: 137 DYIFRACFIDSFQGTVVAKF-----AYENLGARTAAVLFDVANDYSSGIANNFKDAFTAL 191 + FR D A F L RT A++ + ++ S +A +K FT Sbjct: 149 KWFFRVTPHDEMFAAQQADFIDWLNQKYGLNLRTFAIIHE-DTEWGSKVAEAWKKYFTQH 207 Query: 192 GGEVVAFESYQTGD-KDFNAQLTKIKAQDPDVLFLPDYYNTVALIAKQARAQGMD----- 245 G +V SY ++++ K+KA +PD+L Y L+ + +AQ Sbjct: 208 GYTLVEEVSYHAATVTSLDSEVQKLKAANPDILLAASYIQDAILLVQTMKAQNFAPKVVL 267 Query: 246 -----------IPLLGADGWDGITDVAGLEVANSYFSNHYSPESDDK--DVQEFVKKYSE 292 + +G DGW + EV +SP+ DK ++E +Y + Sbjct: 268 AQDAGFINPSYVSQVGKDGW----YIFSREV--------FSPDLIDKIPRLKEVNDRYKK 315 Query: 293 KFGKTPSALAALGYDAMKILGEAL 316 K+G + +A Y + +L AL Sbjct: 316 KYGVDLNGNSARDYTGIWVLYYAL 339 >gi|14601070|ref|NP_147596.1| branched-chain amino acid ABC transporter substrate-binding protein [Aeropyrum pernix K1] Length = 500 Score = 92.8 bits (229), Expect = 1e-20 Identities = 81/312 (25%), Positives = 144/312 (46%), Gaps = 29/312 (9%) Query: 27 TIKVGVIMPTSGTLSTYGVDTTNAIKLAAEEINAAGGVNGV--PIEVIVEDDEGNPEKTK 84 TI +G ++P +G L +YGV A+++A E++NA +++ VED + P+ Sbjct: 35 TITIGALLPLTGDLQSYGVRAQAAVQVAVEDVNAYLESKNAWFRLDLKVEDTQTKPDVAV 94 Query: 85 AAYLKLVTQDNVAAIVGPLTSNCTLAVVDSAQSDQVPLITPTATNDQVTLAGDYIFRACF 144 + LV Q + IVGP+TS + D A + V +I+P++T ++ +AGD +FR C Sbjct: 95 QKFNSLVAQ-GIKFIVGPMTSAEVKKLKDLADQNNVLIISPSSTAIELKIAGDNVFRFCP 153 Query: 145 IDSFQGTVVAKFAYENLGARTAAVLFDVANDYSSGIANNFKDAFTALGGEVVAFESYQTG 204 D Q + A +LG + AV+ + A+ + +G+ K+ G EV + SY Sbjct: 154 TDDVQSKAIGALA-RDLGLK-GAVIINRADTWGNGLMEATKEVLENEGVEVASVYSYNPE 211 Query: 205 DKDFNA----------QLTKIKAQDPDVLFLPDYYNTVALIAKQARAQGMDIPL-LGADG 253 +F+ L +D + + V L + A + ++ L +G+DG Sbjct: 212 SPNFSGIASQANGDVESLVSKYGKDKVAVVAIGFKEVVELFSAAADYETLESVLWIGSDG 271 Query: 254 WDGITD------VAGLEVANSYFSNHYSP---ESDDKDVQEFVKKYSEKFGKTPSALAAL 304 +++ V+ + + +SP E+ +K QE V K G+ P A + Sbjct: 272 TAQLSEFTTDPLAREFSVSTLFINPLFSPAATEAQEKVRQEVV----AKIGEEPDAYSLA 327 Query: 305 GYDAMKILGEAL 316 YDA+ + AL Sbjct: 328 AYDAVWAIALAL 339 >gi|118431107|ref|NP_147326.2| hypothetical protein APE_0558.1 [Aeropyrum pernix K1] Length = 431 Score = 50.8 bits (120), Expect = 6e-08 Identities = 46/211 (21%), Positives = 90/211 (42%), Gaps = 10/211 (4%) Query: 22 GGGEKTIKV--GVIMPTSGTLSTYGVDTTNAIKLAAEEINAAGGVN----GVPIEVIVED 75 GGGE V GV +SGT A E +N+ GGVN VP+ ++ ED Sbjct: 36 GGGEPEELVIGGVFSLSSGTSVEACRQALAGAMAAVEWVNSNGGVNIGGSKVPVRLLQED 95 Query: 76 DEGNPEKTKAAYLKLVTQDNVAAIVGPLTSNCTLAVVDSAQS-DQVPLITPTATNDQVTL 134 D+G+P + Q V ++ P + V++A+ V ++ A Sbjct: 96 DKGDPANAVRLIEYMARQRGVGVMLAPCDPGVLVDAVEAARGYGVVSIVYGDAPASVADP 155 Query: 135 AGDYIFRACFIDSFQGTVVAKFAYENLGARTAAVLFDVANDYSSGIANNFKDAFTALGGE 194 G + + + V+ + ++ +R A+++ +++ +A ++ G Sbjct: 156 GGKTLLVGAPAEEYFTPVLEMVSILDIQSRNLAIVYQ-DTGFAAAVAEATRNRAVEQGFV 214 Query: 195 VVAFESY--QTGDKDFNAQLTKIKAQDPDVL 223 VV + +Y Q G+++ +++A +PDV+ Sbjct: 215 VVLYSAYPPQAGEEELGTLALRLQASNPDVI 245 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.132 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 340,101 Number of Sequences: 1700 Number of extensions: 13758 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 3 length of query: 389 length of database: 492,079 effective HSP length: 79 effective length of query: 310 effective length of database: 357,779 effective search space: 110911490 effective search space used: 110911490 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719584|ref|YP_003875116.1| hypothetical protein STHERM_c19080 [Spirochaeta thermophila DSM 6192] (178 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431717|ref|NP_148362.2| purine phosphoribosyltransferase [... 57 3e-10 gi|118431076|ref|NP_147275.2| purine phosphoribosyltransferase [... 55 8e-10 >gi|118431717|ref|NP_148362.2| purine phosphoribosyltransferase [Aeropyrum pernix K1] Length = 178 Score = 57.0 bits (136), Expect = 3e-10 Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 18/166 (10%) Query: 7 YFTYEDIHRTVERLARRIQESRFDPDVIVAIGTGGFIPARILRTYIEKPILTVGI----A 62 + ++ DI V +A +I S F+PDVIV I GG +PA +L + + +G+ Sbjct: 21 HLSWRDIEDAVRDVADKIVGSGFEPDVIVGILRGGIVPALLLADAL--GVKNIGVMEIKL 78 Query: 63 YYDVNNRPMEVPQKIQWIDEVEKKLKGRRILLVDEVDDTRSTLAYCLSELLRNEPAAISV 122 Y V R + + EV K R +L+VD+V D+ TL + + + PA + Sbjct: 79 YTSVGVRKPRPFLRQPLVIEV----KDRNVLVVDDVSDSGLTLQHAIEAVDLYLPAQVKT 134 Query: 123 MVLHNKRKPKKAEFPPGISQVFVGEDLEDYWVYYPWDALDIEEHYR 168 L+ KP P S+ D W+ +PW+ ++EE + Sbjct: 135 ATLY--IKPWTNLVPDYYSKSL------DKWIVFPWERREVEEELK 172 >gi|118431076|ref|NP_147275.2| purine phosphoribosyltransferase [Aeropyrum pernix K1] Length = 229 Score = 55.5 bits (132), Expect = 8e-10 Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 6/143 (4%) Query: 20 LARRIQESRFDPDVIVAIGTGGFIPARILRTYIEKPILTVGIAYYDVNNRPMEVPQKIQW 79 L+ I+ES ++PDV++A+ GGF+PAR+L +++ L + + V M +++ Sbjct: 21 LSNMIRESGYEPDVVIAVSRGGFVPARLLCDFLDVTNLLSIQSQHWVEAARMAEKAILKF 80 Query: 80 IDEVEKKLKGRRILLVDEVDDTRSTLAYCLSELLRNEPAAISVMVLHNKRKPKKAEFPPG 139 V+ L G + LLVD++ DT TL E + E + V + A+F P Sbjct: 81 PYRVD--LSGLKALLVDDIVDTGDTLLLA-KEFIEKEWKPGELRVAALQWISSVAKFKP- 136 Query: 140 ISQVFVGEDLEDYWVYYPWDALD 162 + E E W YPW L+ Sbjct: 137 --DYYYMEVREWAWFQYPWTRLE 157 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 197,737 Number of Sequences: 1700 Number of extensions: 8790 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 2 length of query: 178 length of database: 492,079 effective HSP length: 71 effective length of query: 107 effective length of database: 371,379 effective search space: 39737553 effective search space used: 39737553 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719585|ref|YP_003875117.1| transporter [Spirochaeta thermophila DSM 6192] (375 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431931|ref|NP_148709.2| ABC transporter permease [Aeropyru... 129 1e-31 gi|118430861|ref|NP_146935.2| ABC transporter permease [Aeropyru... 117 6e-28 gi|118431932|ref|NP_148710.2| ABC transporter permease [Aeropyru... 62 2e-11 >gi|118431931|ref|NP_148709.2| ABC transporter permease [Aeropyrum pernix K1] Length = 304 Score = 129 bits (324), Expect = 1e-31 Identities = 90/256 (35%), Positives = 125/256 (48%), Gaps = 20/256 (7%) Query: 68 LMDMTLLHSLLQRTLVAGTPLLLGILGEVLTERAGILNLGIEGLMSVGAVVAFMVGFSTG 127 L D+T L L +V P+ L +GE+ +ERAGI+N+G+EG+M A A V TG Sbjct: 8 LEDLTSLALLAASAMV---PITLASIGEIASERAGIVNIGLEGIMLASAWAAVAVYILTG 64 Query: 128 SXXXXXXXXXXXXXXXXGV-HAFFSVSLRGNQVVSGLALAMVGTGIASV-----WGKSYI 181 GV H SV L+G+Q+V+G+ L + G V WG Sbjct: 65 WGPLAGYLLGALLGLSIGVLHGVVSVYLKGDQIVTGVGLNIFSAGATVVGTYMLWGT--F 122 Query: 182 GMRQPVRVAPLDVPFLSEIPVVGVLFSQSAFFYLGLVLAVLLWFFFYHTRGGVILRSVGE 241 PV P V + GV S L L V++W F Y T G+ LRS GE Sbjct: 123 SNSPPVEPMPGFV-------IAGVRISPMV--PLSLAAGVIVWLFLYRTIAGLRLRSCGE 173 Query: 242 HPRAAESEGVPVQRVRILATVTGGAFSGLAGAQLVLSYTASWTEGVVGGRGWIVVALTIF 301 PR+AE+ GV V ++ A G +GLAGA L + Y + + + GRG+I +A F Sbjct: 174 DPRSAEAMGVNVALYQVAAAGFAGLMAGLAGAYLSIDYQGVFAKNMTAGRGFIALANVAF 233 Query: 302 SLWHPLRAVWGAFLFG 317 S W+PL A+ G ++FG Sbjct: 234 SGWNPLAALLGGYVFG 249 >gi|118430861|ref|NP_146935.2| ABC transporter permease [Aeropyrum pernix K1] Length = 277 Score = 117 bits (292), Expect = 6e-28 Identities = 77/249 (30%), Positives = 114/249 (45%), Gaps = 21/249 (8%) Query: 77 LLQRTLVAGTPLLLGILGEVLTERAGILNLGIEGLMSVGAVVAFMVGFSTGSXXXXXXXX 136 ++ L PL L LGE + ER G +NLG++GLM+VGA V + G TGS Sbjct: 1 MISAVLTTLIPLSLAALGEAVLERTGRVNLGVDGLMAVGAAVGALAGVETGSLLAGLAAG 60 Query: 137 XXXXXXXXGVHAFFSVSLRGNQVVSGLALAMVGTGIASVWGKSYIGMRQPVRVAPLDVPF 196 + + L N +V+GL + G G+ + G G PV + Sbjct: 61 ALAGGVGSLSYIILTDRLGVNMIVAGLLVFFAGIGLGDLVGSKIAGRPGPVLTS------ 114 Query: 197 LSEIPVVGVLFSQSAFFYLGLVLAVLLWFFFYHTRGGVILRSVGEHPRAAESEGVPVQRV 256 L++ +A + AV L Y+T G LR VGE+P AA+ GVPV R+ Sbjct: 115 ---------LYTTAATIGIA---AVALHLILYNTVTGTALRVVGENPAAAKERGVPVWRL 162 Query: 257 RILATVTGGAFSGLAGAQLV--LSYTASWTEGVVGGRGWIVVALTIFSLWHPLRAVWGAF 314 R+ A + G +GLAG +V LSY W GV G GW+ + + I W P+ + + Sbjct: 163 RLSAALVQGLSAGLAGYIMVAGLSY-GKWYSGVTAGLGWVALGIVILGYWTPIGVLIAST 221 Query: 315 LFGGIFVLQ 323 +F ++ Sbjct: 222 AVSTVFSMR 230 >gi|118431932|ref|NP_148710.2| ABC transporter permease [Aeropyrum pernix K1] Length = 359 Score = 62.0 bits (149), Expect = 2e-11 Identities = 65/256 (25%), Positives = 102/256 (39%), Gaps = 23/256 (8%) Query: 82 LVAGTPLLLGILGEVLTERAGILNLGIEGLMSVGAVVAFMVGFSTGSXXXXXXXXXXXXX 141 LV + L++ L + R G N+G EG + GA A + + Sbjct: 57 LVRSSILVMTALAFAIPLRMGFFNIGAEGQLYAGAAAALVAALTLPYTPLPALVAAAVAG 116 Query: 142 XXXGVHA-FFSVSLRGNQVVSGLALAMVGTGIASVWGKSYIGMR---QPVRV-APLDVPF 196 G+ A V L N+V+S + L + + W YI + PV L+VP Sbjct: 117 GLMGLFAGLLRVKLNINEVLSTIMLNWI-----AFWSLRYIVVEYLADPVYSHLTLEVPL 171 Query: 197 LSEIPVVGVLFS--------QSAF---FYLGLVLAVLLWFFFYHTRGGVILRSVGEHPRA 245 + IP + +S F ++ L A+ W Y T G+ R G + A Sbjct: 172 EARIPWIPSELLPPPLQEHLRSGFPMIVFVSLATALAAWTVIYKTVPGLRYRFAGANEYA 231 Query: 246 AESEGVPVQRVRILATVTGGAFSGLAGAQLVL--SYTASWTEGVVGGRGWIVVALTIFSL 303 A S GV V RV++ + G +GL GA L+L SY T + G G+ + + + Sbjct: 232 AASRGVAVGRVKLASMAAAGVLAGLGGALLILGHSYRIDSTLSGLFGYGFEGIGVALIGR 291 Query: 304 WHPLRAVWGAFLFGGI 319 +PL V + G + Sbjct: 292 NNPLGIVAASLFVGDL 307 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 381,395 Number of Sequences: 1700 Number of extensions: 17254 Number of successful extensions: 91 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82 Number of HSP's gapped (non-prelim): 3 length of query: 375 length of database: 492,079 effective HSP length: 78 effective length of query: 297 effective length of database: 359,479 effective search space: 106765263 effective search space used: 106765263 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719586|ref|YP_003875118.1| transporter [Spirochaeta thermophila DSM 6192] (358 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431932|ref|NP_148710.2| ABC transporter permease [Aeropyru... 114 3e-27 gi|14600420|ref|NP_146934.1| ABC transporter permease [Aeropyrum... 74 4e-15 gi|118430861|ref|NP_146935.2| ABC transporter permease [Aeropyru... 43 1e-05 >gi|118431932|ref|NP_148710.2| ABC transporter permease [Aeropyrum pernix K1] Length = 359 Score = 114 bits (286), Expect = 3e-27 Identities = 88/317 (27%), Positives = 136/317 (42%), Gaps = 26/317 (8%) Query: 39 GADPLQVIVEVFSGSFGSVYGLKETLAKAIPLVLIGVGLCIPFQAKFWNIGAEGQLLAGA 98 GADPL+ + ++ +Y + L ++ LV+ + IP + F+NIGAEGQL AGA Sbjct: 35 GADPLRGVADIL---LSFIYYPEIFLVRSSILVMTALAFAIPLRMGFFNIGAEGQLYAGA 91 Query: 99 VAATWYALNVAHA-LPLWVNXXXXXXXXXXXXXXXXXIPVLLKERFGVNEVIATLMLNYI 157 AA AL + + LP V LL+ + +NEV++T+MLN+I Sbjct: 92 AAALVAALTLPYTPLPALVAAAVAGGLMGLFAG-------LLRVKLNINEVLSTIMLNWI 144 Query: 158 AFELVTLLVVGPWRGATQQGYPY-TDDFPLSARIPLLPGTRI------HL-----FTXXX 205 AF + +VV Y + T + PL ARIP +P + HL Sbjct: 145 AFWSLRYIVV---EYLADPVYSHLTLEVPLEARIPWIPSELLPPPLQEHLRSGFPMIVFV 201 Query: 206 XXXXXXXXWIILYRTRLGYEVRVVGESRDAARYAGIHTGPVXXXXXXXXXXXXXXXXXXX 265 W ++Y+T G R G + AA G+ G V Sbjct: 202 SLATALAAWTVIYKTVPGLRYRFAGANEYAAASRGVAVGRVKLASMAAAGVLAGLGGALL 261 Query: 266 XXXIHYHLSYPANISAGYGFTGIIVAWLARRNPVLVPLTAFFFAGIAVGGDALQISVGLP 325 Y + + GYGF GI VA + R NP+ + + F +A G + +Q++ +P Sbjct: 262 ILGHSYRIDSTLSGLFGYGFEGIGVALIGRNNPLGIVAASLFVGDLASGSERIQVTARIP 321 Query: 326 ASTVQVFNGILLLSLVA 342 A V NG ++ ++ A Sbjct: 322 AELADVVNGAIIFTVAA 338 >gi|14600420|ref|NP_146934.1| ABC transporter permease [Aeropyrum pernix K1] Length = 311 Score = 74.3 bits (181), Expect = 4e-15 Identities = 71/275 (25%), Positives = 104/275 (37%), Gaps = 22/275 (8%) Query: 70 LVLIGVGLCIPFQAKFWNIGAEGQLLAGAVAATWYALNVAHALPLWVNXXXXXXXXXXXX 129 LV GL + ++A IG E Q+ A AVAA + LP Sbjct: 55 LVAAASGLVLSYRAGLITIGVEAQVTASAVAALYALAYAGLGLP------GALTLAAIVS 108 Query: 130 XXXXXIPVLLKERFGVNEVIATLMLNYIAFELVTLLVVGPWRGATQQGYPYTDDFPLSAR 189 + L+ VNE++++LM+NYI +V LV GP R +T + A Sbjct: 109 LAIGIVIAALRVYLDVNEILSSLMINYIVLYMVNGLVSGPLREGA-----FTKTRSIEAF 163 Query: 190 I-PLLPGTRIHLFTXXXXXXXXXXXWIILYRTRLGYEVRVVGESRDAARYAGIHTGPVXX 248 + PL G WI+L RT LG +R G + AA I Sbjct: 164 VGPLEAG--------LAAVSMAALSWILLERTSLGISLRASGPAPRAADIYTIGRARAML 215 Query: 249 XXXXXXXXXXXXXXXXXXXXIHYHLSYPANISAGYGFTGIIVAWLARRNPVLVPLTAFFF 308 I + GYG+ ++V+W+A +P + + FF Sbjct: 216 LSSLPQSLAAAAAGLILLGGIQTVFT-ALKQPQGYGYAAVLVSWMAELSPTTLIPVSLFF 274 Query: 309 AGIAVGGDALQISVGLPASTVQVFNGILLLSLVAA 343 A IA G LQ + G+P+S V + I L + A Sbjct: 275 AWIAGAGFILQ-AYGMPSSLVLLLQSIALTVYMVA 308 >gi|118430861|ref|NP_146935.2| ABC transporter permease [Aeropyrum pernix K1] Length = 277 Score = 43.1 bits (100), Expect = 1e-05 Identities = 63/295 (21%), Positives = 108/295 (36%), Gaps = 28/295 (9%) Query: 60 LKETLAKAIPLVLIGVGLCIPFQAKFWNIGAEGQLLAGAVAATWYALNVAHALPLWVNXX 119 + L IPL L +G + + N+G +G + GA + L Sbjct: 2 ISAVLTTLIPLSLAALGEAVLERTGRVNLGVDGLMAVGAAVGALAGVETGSLL------- 54 Query: 120 XXXXXXXXXXXXXXXIPVLLKERFGVNEVIATLMLNYIAFELVTLLVVGPWRGATQQGYP 179 ++L +R GVN ++A L++ + L L VG + A + G Sbjct: 55 AGLAAGALAGGVGSLSYIILTDRLGVNMIVAGLLVFFAGIGLGDL--VGS-KIAGRPGPV 111 Query: 180 YTDDFPLSARIPLLPGTRIHLFTXXXXXXXXXXXWIILYRTRLGYEVRVVGESRDAARYA 239 T + +A I + +HL ILY T G +RVVGE+ AA+ Sbjct: 112 LTSLYTTAATIGIA-AVALHL---------------ILYNTVTGTALRVVGENPAAAKER 155 Query: 240 GIHTGPVXXXXXXXXXXXXXXXXXXXXXXIHYHLSYPANISAGYGFTGIIVAWLARRNPV 299 G+ + + Y Y + ++AG G+ + + L P+ Sbjct: 156 GVPVWRLRLSAALVQGLSAGLAGYIMVAGLSYGKWY-SGVTAGLGWVALGIVILGYWTPI 214 Query: 300 LVPLTAFFFAGIAVGGDALQISVGLPASTVQVFNGILLLSLVAAEFFLNYRIVIR 354 V + + + + + + G+P IL+L L+AA L RI +R Sbjct: 215 GVLIASTAVSTVFSMRTQIAAATGIP-PLADAIPYILVLILLAAGTHLYERIGLR 268 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.143 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 309,156 Number of Sequences: 1700 Number of extensions: 11633 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 4 length of query: 358 length of database: 492,079 effective HSP length: 78 effective length of query: 280 effective length of database: 359,479 effective search space: 100654120 effective search space used: 100654120 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719587|ref|YP_003875119.1| transporter [Spirochaeta thermophila DSM 6192] (505 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 263 7e-72 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 227 6e-61 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 102 3e-23 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 102 3e-23 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 98 4e-22 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 97 9e-22 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 97 1e-21 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 91 5e-20 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 91 7e-20 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 90 1e-19 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 87 7e-19 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 86 2e-18 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 84 8e-18 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 84 1e-17 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 83 1e-17 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 83 2e-17 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 82 2e-17 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 81 7e-17 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 80 1e-16 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 80 2e-16 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 79 3e-16 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 78 6e-16 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 76 2e-15 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 74 8e-15 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 74 8e-15 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 73 2e-14 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 69 3e-13 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 68 5e-13 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 67 8e-13 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 66 2e-12 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 66 2e-12 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 65 3e-12 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 63 2e-11 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 59 3e-10 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 59 3e-10 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 55 3e-09 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 55 4e-09 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 54 1e-08 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 49 2e-07 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 48 5e-07 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 263 bits (672), Expect = 7e-72 Identities = 186/495 (37%), Positives = 257/495 (51%), Gaps = 12/495 (2%) Query: 6 SLELKAITKVFPQ-VVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSIL 64 ++ ++ I KV+P V A +V F++RAGE+ LLGENGAGKTTLM ILYG +PT G I Sbjct: 12 AVAMRGIVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIY 71 Query: 65 VDGREVRFRSPADAIRAGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEA 124 V GR+V +R P DAIR GI MV Q LVE+ TV EN+ + SL L A RR +E Sbjct: 72 VWGRKVSWRGPWDAIRNGIAMVYQQFRLVESMTVEENIAIYLSSLG-LGRSEARRRTLET 130 Query: 125 ILARYGFPLDLDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVL 184 R G +DL V +L G RQRVEI+KAL G+ VLILDEPTS LTP E ++LFS L Sbjct: 131 -AERLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTL 189 Query: 185 REFAAQGHAVILISHKLEEIFQXXXXXXXXXXXXXXXE-ASTASIDKRELARMMVGREVI 243 R G +V+ I+HKL E+ + + ELAR+MVG + Sbjct: 190 RLLKDMGVSVVYITHKLGEVVRVADRVTVLRRGRVSAVIEDVGRTSEEELARLMVG--TL 247 Query: 244 FSVDRXXXXXXXXXXXXXXXXXXXXRGETAVEGVSFTIRRHQVLGVAGVSGNGQKELVEA 303 G V VS +R +++G+AGV+GNGQ+ELV+A Sbjct: 248 PPPTPRPPGKVGRELLSVRGVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDA 307 Query: 304 ITGLRRPVSGVIRLKGHGVTGATPRVLHALGVGHIPEERLRFGTVPNLLIYENAVLKHHH 363 I GLRRPV G I ++G + G+ + G G+I +R + + + EN ++ Sbjct: 308 IIGLRRPVRGSIEVQGRRIEGSLD--FYRAGGGYIAGDRGKV-LAMDYSVAENIAFLYY- 363 Query: 364 MRPFSDVVFLNVRSMEEHARRIVDDFGVEAPSIYARTGNLSGGNIQKLILGREMSRKPDL 423 S + L +E+ RR+V+ F + A S + G LSGGN QK+I+G E+ R L Sbjct: 364 --TASKTLLLRRSRLEDLFRRLVERFRLVARSPWTPVGRLSGGNQQKVIVGSEVLRGFKL 421 Query: 424 LVASHPTYGLDVGATEYIRRQILRQRDEGAAXXXXXXXXXXXXXXXXXXGVMYRGRMVFL 483 LVA +PT GLD+ T ++R + +GA VM GR+ + Sbjct: 422 LVAVNPTQGLDIATTSFVRNLLSELARQGAGILLVSTDLDEILELSDRIYVMSGGRVTGV 481 Query: 484 APAEEVDVEEIGYHM 498 + E++G M Sbjct: 482 LERSQATPEKLGVLM 496 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 227 bits (578), Expect = 6e-61 Identities = 151/453 (33%), Positives = 226/453 (49%), Gaps = 15/453 (3%) Query: 5 QSLELKAITKVFPQVV-ANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSI 63 + L ++ + V+P V A V+ S AG + LLGENGAGKTTL+ + G+ +P G I Sbjct: 3 KGLAVEDLDVVYPGGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRI 62 Query: 64 LVDGREVRFRSPADAIRAGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVE 123 LVDG E+R + P D++R+GI M Q+ + E+L + + +A R+ Sbjct: 63 LVDGYELRPKGPGDSLRSGIYMASQNPPVYPGIKAYEDLAVT----LMVAGRKAGLRQAR 118 Query: 124 AILAR----YGFPLDLDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQE 179 +LA G +D D ++ E+ +RQR+E++KAL GS ++LDEPT+ LTP+E Sbjct: 119 TMLAEASEALGLNIDPDRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAAR 178 Query: 180 LFSVLREFAAQGHAVILISHKLEEIFQXXXXXXXXXXXXXXXEASTASIDKRELARMMVG 239 + AA G AV+L++H++ E + E S E+A++M G Sbjct: 179 MLEAAGRLAASGAAVLLVTHRIGEAMEHADRLVILRKGVKVYEGPPPS-STEEVAKLMFG 237 Query: 240 REVIFSVDRXXXXXXXXXXXXXXXXXXXXRGETAVEGVSFTIRRHQVLGVAGVSGNGQKE 299 + + + +R+ +V+GVAGV+GNGQ+E Sbjct: 238 E--VLAPREPKTFTAATSTGRPVLSVDRVSLPPRLRMARLEVRQGEVVGVAGVAGNGQEE 295 Query: 300 LVEAITGLRRPVSGVIRLKGHGVTGATPRVLHALGVGHIPEERLRFGTVPNLLIYENAVL 359 L E I GLR+P G I + G VT A P LG+G IPEERL VP I N L Sbjct: 296 LFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRLGLGVIPEERLGHALVPGESIAFNIAL 355 Query: 360 KHHHMRPFSDVVFLNVRSMEEHARRIVDDFGVEAPSIYARTGNLSGGNIQKLILGREMSR 419 H R D ++ R E+ A ++ D G++A S LSGGN+Q+L+L RE+ Sbjct: 356 SIHTAR---DGFIVDWRYYEKLAEEMIRDMGIKAVSPRQMVDELSGGNMQRLVLARELWL 412 Query: 420 KPDLLVASHPTYGLDVGATEYIRRQILRQRDEG 452 KP LLVA +P GLD+ + + + + G Sbjct: 413 KPRLLVAMNPAAGLDLEGQQAVAEMMRMSSERG 445 Score = 62.0 bits (149), Expect = 3e-11 Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 6/174 (3%) Query: 29 VRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVDGREVRFRSPADAIRAGIGMVPQ 88 VR GE+VG+ G G G+ L ++ GL +P G IL+ G +V P R G+G++P+ Sbjct: 277 VRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRLGLGVIPE 336 Query: 89 HSM---LVENHTVLENLVLADPSLP--FLFPHRAMRRKVEAILARYGFP-LDLDAFVWEL 142 + LV ++ N+ L+ + F+ R + E ++ G + V EL Sbjct: 337 ERLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGIKAVSPRQMVDEL 396 Query: 143 SAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREFAAQGHAVIL 196 S G QR+ + + L +L+ P + L + Q + ++R + +G +++ Sbjct: 397 SGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRMSSERGGVLVI 450 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 102 bits (253), Expect = 3e-23 Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 2/198 (1%) Query: 7 LELKAITKVFPQVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVD 66 L+++ + K F + A VSFSVR GE VGL+G NGAGKTTL NI+ G+Y P G ++ Sbjct: 5 LDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYK 64 Query: 67 GREVRFRSPADAIRAGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAIL 126 G ++ RAGI Q + N TVL N+++ +L R R + + Sbjct: 65 GVDITGWPAYRRSRAGIARTFQIVRPLANLTVLNNVIVG--ALLRTNDIREARERAMEAI 122 Query: 127 ARYGFPLDLDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLRE 186 G D +L+ +++R+E+ +AL ++L+LDE + L P+E +L L E Sbjct: 123 DMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLE 182 Query: 187 FAAQGHAVILISHKLEEI 204 + +G +I++ H + + Sbjct: 183 ISKRGITIIMVEHVMRAV 200 Score = 45.4 bits (106), Expect = 3e-06 Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 19/168 (11%) Query: 270 GETAVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPRV 329 G A++GVSF++RR + +G+ G +G G+ L I+G+ P G + KG +TG Sbjct: 16 GIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYKGVDITGWPAYR 75 Query: 330 LHALGVG---HIPEERLRFGTVPNLLIYENAVLKHHHMRPFSDVVFLNVRSMEEHARRIV 386 G+ I + N+++ A+L+ + ++R E A + Sbjct: 76 RSRAGIARTFQIVRPLANLTVLNNVIV--GALLRTN-----------DIREARERAMEAI 122 Query: 387 DDFGVEA-PSIYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGL 433 D G+ I A+ NL ++L L R ++ +P+LL+ GL Sbjct: 123 DMVGLAGKEDILAKDLNLI--EKKRLELARALATQPELLLLDEIAAGL 168 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 102 bits (253), Expect = 3e-23 Identities = 68/208 (32%), Positives = 112/208 (53%), Gaps = 16/208 (7%) Query: 12 ITKVFPQVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVDGREVR 71 IT F V A +VS VR GEI+G++G NGAGKT+L+N++ G+Y+P G + GR++ Sbjct: 7 ITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDIT 66 Query: 72 FRSPADAIRAGIGMVPQHSMLVENHTVLENLVL-------ADPSLPFLFPHRAMRRKVEA 124 P I G+ QHS L + TVLEN+++ L+ RA R +VEA Sbjct: 67 GLKPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWEVEA 126 Query: 125 ILARYGFPLDL-------DAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQET 177 R +DL + + L G +++V++ AL Q +V+++DEP + L+ +E Sbjct: 127 -RERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEK 185 Query: 178 QELFSVLREFAAQGH-AVILISHKLEEI 204 +++ + E + H ++LI H +E + Sbjct: 186 EDIVRAIIETSETMHTTMVLIEHDMEVV 213 Score = 60.5 bits (145), Expect = 9e-11 Identities = 48/185 (25%), Positives = 85/185 (45%), Gaps = 12/185 (6%) Query: 270 GETAVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPRV 329 G TA++ VS +RR ++LG+ G +G G+ L+ ITG+ +P G + KG +TG P Sbjct: 13 GVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDITGLKPHQ 72 Query: 330 LHALGVGHIPEERLRFGTVPNLLIYENAVLKHHHMRPFSDV-----VFLNVR---SMEEH 381 LG+ + F ++ + EN +++ H S + F R E Sbjct: 73 RITLGLSRTFQHSELF---HSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWEVEARER 129 Query: 382 ARRIVDDFGVEAPSIYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYI 441 A ++D + ++ G L G +K+ L +++ P++++ P GL E I Sbjct: 130 AEHVIDLLDLHEHR-HSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEKEDI 188 Query: 442 RRQIL 446 R I+ Sbjct: 189 VRAII 193 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 98.2 bits (243), Expect = 4e-22 Identities = 68/199 (34%), Positives = 110/199 (55%), Gaps = 6/199 (3%) Query: 6 SLELKAITKVFPQVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILV 65 S++L+ + KVF VVA DV+ + E V +LG +G+GKTTL+ ++ G+Y+P+ G I Sbjct: 3 SVKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYF 62 Query: 66 DGREVRFRSPADAIRAGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAI 125 + +V P + IG+V Q+ L + TV EN +A P F A++ KV ++ Sbjct: 63 NDVDVTDLPPN---KRNIGLVFQNYALYPHMTVYEN--IAFPLRLRNFGEPAIKEKVLSV 117 Query: 126 LARYGFPLDLDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLR 185 G LD + +LS GQ+QRV + +AL++ +VL+LDEP S L ++ S L+ Sbjct: 118 AKLLGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELK 177 Query: 186 EFAAQ-GHAVILISHKLEE 203 + + G I ++H E Sbjct: 178 KLQKELGITAIYVTHDQSE 196 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 97.1 bits (240), Expect = 9e-22 Identities = 64/209 (30%), Positives = 108/209 (51%), Gaps = 15/209 (7%) Query: 7 LELKAITKVFPQVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVD 66 L ++ + K F +VA V+ + G++ L+G NG+GKTTL+N++ G Y+P G +L Sbjct: 7 LRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLFK 66 Query: 67 GREVRFRSPADAIRAGIGMVPQHSMLVENHTVLENLVLADPS-------------LPFLF 113 GR++ SP + + G+ Q N TVLEN++ A S L F Sbjct: 67 GRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWLGF 126 Query: 114 PHRAMRRKVEAILARYGFPLDLDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLT 173 RA R E IL G D ELS GQ + +EI +A+++G++++I+DEP + + Sbjct: 127 EKRAAARAFE-ILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVN 185 Query: 174 PQETQELFSVLREFAAQ-GHAVILISHKL 201 P+ + ++ A + G ++I H++ Sbjct: 186 PRLAGSIMERIKYLAREKGITFLIIEHRI 214 Score = 53.9 bits (128), Expect = 9e-09 Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 7/170 (4%) Query: 270 GETAVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPRV 329 G A++ V+ I R +V + G +G+G+ LV I+G +P G + KG +TG +P Sbjct: 18 GIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLFKGRDITGMSPHE 77 Query: 330 LHALGV---GHIPEERLRFGTVPNLLIYENAVLKHHHMRPFSDVVFLNVRSMEEHARRIV 386 + LG+ IP+ + N+L ++ ++ ++ + ++L + A R Sbjct: 78 ISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWLGFE--KRAAARAF 135 Query: 387 DDFG-VEAPSIY-ARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLD 434 + G V ++ R+G LSGG ++ L + R + + ++++ P G++ Sbjct: 136 EILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVN 185 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 96.7 bits (239), Expect = 1e-21 Identities = 61/186 (32%), Positives = 101/186 (54%), Gaps = 9/186 (4%) Query: 18 QVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVDGREVRFRSPAD 77 ++VA +VS SV GE++ ++G +G+GKTTL+NI+ G+ +P +G ++VDG EV + Sbjct: 26 RIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGEE 85 Query: 78 AIR---AGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAILARYGFPLD 134 R +G V Q L+ T LEN++ LP +A R + + +L R G Sbjct: 86 LRRFRLERVGYVFQQHNLIPTLTALENIL-----LPMALAGKANRLRGQELLRRVGLGGK 140 Query: 135 LDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREFA-AQGHA 193 + ELS G++QR+ + AL +++ DEPT L + + +L E A ++G Sbjct: 141 ERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEAHSRGKT 200 Query: 194 VILISH 199 V+L +H Sbjct: 201 VVLTTH 206 Score = 58.2 bits (139), Expect = 5e-10 Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 13/182 (7%) Query: 269 RGE--TAVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGAT 326 RGE A+ VS ++ R +VL + G SG+G+ L+ I G+ RP +G + + G V+ A Sbjct: 23 RGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAG 82 Query: 327 PRVLHALGVGHIPEERLRFGTVPNLLIYENAVLKHHHMRPFSDVVFLNVRSMEEHARRIV 386 L + + + +P L EN +L P + N +E RR+ Sbjct: 83 GEELRRFRLERVGYVFQQHNLIPTLTALENILL------PMALAGKANRLRGQELLRRV- 135 Query: 387 DDFGVEAPSIYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYIRRQIL 446 G+ LSGG Q+L + ++ P ++VA PT LD+ E I R +L Sbjct: 136 ---GLGGKE-RRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILL 191 Query: 447 RQ 448 + Sbjct: 192 EE 193 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 91.3 bits (225), Expect = 5e-20 Identities = 67/201 (33%), Positives = 98/201 (48%), Gaps = 14/201 (6%) Query: 7 LELKAITKVFPQVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVD 66 +E++ + K + V A VSFSV +GE+ G LG NGAGKTT + +L G +PTSGS V Sbjct: 5 IEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARVF 64 Query: 67 GREVRFRSPADAIRAGIGMVPQHSML---VENHTVLENLVLADPSLPFLFPHRAMRRKVE 123 G E+ + A +R +G VP V +L+ L +R +E Sbjct: 65 GVEL-YNPGASGVRRRVGYVPGEFEFYGGVSGGRMLDYWC----RLVGGCSRGVVRELLE 119 Query: 124 AILARYGFPLDLDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSV 183 A FPL L+ V S G +Q + +V A D++++DEPT+ L P + Sbjct: 120 A------FPLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDF 173 Query: 184 LREFAAQGHAVILISHKLEEI 204 +R A +G V SH L E+ Sbjct: 174 VRSKAREGVTVFFSSHVLSEV 194 Score = 47.8 bits (112), Expect = 6e-07 Identities = 54/217 (24%), Positives = 81/217 (37%), Gaps = 29/217 (13%) Query: 273 AVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKG-----HGVTGATP 327 A+ GVSF++ +V G G +G G+ + + G RP SG R+ G G +G Sbjct: 19 ALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARVFGVELYNPGASGVRR 78 Query: 328 RVLHALGVGHIPEERLRFGTVPNLLIYENAVLKHHHMRPFSDVVFLNVRSMEEHARRIVD 387 RV G++P E +G V ++ R + +R +V Sbjct: 79 RV------GYVPGEFEFYGGVSG-----------------GRMLDYWCRLVGGCSRGVVR 115 Query: 388 DFGVEAPSIYART-GNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYIRRQIL 446 + P R G S G Q L L S +PDL+V PT GLD A + + Sbjct: 116 ELLEAFPLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDFVR 175 Query: 447 RQRDEGAAXXXXXXXXXXXXXXXXXXGVMYRGRMVFL 483 + EG G++ G +V L Sbjct: 176 SKAREGVTVFFSSHVLSEVQRVADRVGLLRSGVLVAL 212 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 90.9 bits (224), Expect = 7e-20 Identities = 69/198 (34%), Positives = 107/198 (54%), Gaps = 12/198 (6%) Query: 11 AITKVFPQVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVDGREV 70 A++K F Q A +V F+ +G I+G+LG NGAGKTTL+ + GL +P++G ILV+G V Sbjct: 9 ALSKRFGQRYAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVEG--V 65 Query: 71 RFRSPA-DAIRAGIGMVPQHSMLVENHT---VLENLVLADPSLPFLFPHRAMRRKVEAIL 126 RSP + + IG VP+ ++ T +LE L + + R + L Sbjct: 66 NPRSPGFEKLLPRIGYVPELPVVPLWTTPCILLETLARLEG-----YTSVEARVRAREAL 120 Query: 127 ARYGFPLDLDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLRE 186 G + + + +LS G R+RV + +A I ++L+LDEP S L P+ + +LR Sbjct: 121 EVVGLAGECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRT 180 Query: 187 FAAQGHAVILISHKLEEI 204 A +G VI+ SH L E+ Sbjct: 181 VAREGATVIVSSHILREL 198 Score = 40.8 bits (94), Expect = 8e-05 Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 19/184 (10%) Query: 273 AVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPRVLHA 332 A V FT +LGV G +G G+ L++ I GL +P +G I ++G V +P Sbjct: 19 AYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVEG--VNPRSPGFEKL 75 Query: 333 LG-VGHIPE-ERLRFGTVPNLLIYENAVLKHHHMRPFSDVVFLNVRSMEEHARRIVDDFG 390 L +G++PE + T P +L+ A L+ + V VR+ E A +V G Sbjct: 76 LPRIGYVPELPVVPLWTTPCILLETLARLEGYTS------VEARVRARE--ALEVVGLAG 127 Query: 391 -VEAPSIYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYIRRQILRQR 449 E P G LS G +++++ + + +LLV P GLD +R + Sbjct: 128 ECETP-----IGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVA 182 Query: 450 DEGA 453 EGA Sbjct: 183 REGA 186 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 90.1 bits (222), Expect = 1e-19 Identities = 69/198 (34%), Positives = 104/198 (52%), Gaps = 4/198 (2%) Query: 6 SLELKAITKVFPQVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILV 65 ++E + + K F A + VSFSV GE ++G NG+GKTTL+ ++ G+ +P+ GS+ V Sbjct: 4 TVEARGLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRV 63 Query: 66 DGREVRFRSPADAIRAGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAI 125 G +V +A R IG PQ + T E + + L L P A RR+ + Sbjct: 64 CGYDVWGDGWREA-RGLIGFAPQDPPMARRMTGAEYITVVG-GLLGLSPGVA-RREARRV 120 Query: 126 LARYGFPLDLDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLR 185 L GF L V LS GQR+ + I AL +V++LDEP S L + + L++ LR Sbjct: 121 LEMLGFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASLR 180 Query: 186 EFAAQGHAVILISHKLEE 203 + A +G V+ SH +E Sbjct: 181 K-AFKGRTVLFSSHDPQE 197 Score = 59.3 bits (142), Expect = 2e-10 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 15/212 (7%) Query: 270 GETAVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPRV 329 G TAV GVSF++ + + G +G+G+ L+ ++G+ RP G +R+ G+ V G R Sbjct: 16 GRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVCGYDVWGDGWRE 75 Query: 330 LHALGVGHIPEERLRFGTVPNLLIYENAVLKHHHMRPFSDVVFLNVRSMEEHARRIVDDF 389 L +G P++ P + + ++ ++ L+ ARR+++ Sbjct: 76 ARGL-IGFAPQD-------PPM---ARRMTGAEYITVVGGLLGLSPGVARREARRVLEML 124 Query: 390 GVEAPSIYAR-TGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYIRRQILRQ 448 G E + R LSGG + L + ++ P+++V P GLDV A E + LR+ Sbjct: 125 GFE--DVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWAS-LRK 181 Query: 449 RDEGAAXXXXXXXXXXXXXXXXXXGVMYRGRM 480 +G +M+RGR+ Sbjct: 182 AFKGRTVLFSSHDPQEAEAESDRVLIMHRGRL 213 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 87.4 bits (215), Expect = 7e-19 Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 13/191 (6%) Query: 18 QVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVDGREVRFRSPAD 77 +V+ DVS S GE + ++G +G+GK+TL+ + L +P SGSI+ G +V S + Sbjct: 18 KVLKGVDVSLSY--GEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVFRGVDVTRLSGSQ 75 Query: 78 --AIRAGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAILARYGFPLDL 135 +R IG +PQ L + TVL N+ + P RR E +Y L + Sbjct: 76 LRMVRRKIGYLPQSYSLFPHMTVLRNI-----TYPLEKALGLSRRDAEERAVKYLSMLGI 130 Query: 136 DAFVW----ELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREFAAQG 191 + LS GQ+QR + +AL D+L+LDEPTS L P+ ++ L A G Sbjct: 131 EDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEALFRVATLG 190 Query: 192 HAVILISHKLE 202 A+I+++H+ + Sbjct: 191 KAMIVVTHEAD 201 Score = 66.6 bits (161), Expect = 1e-12 Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 12/187 (6%) Query: 270 GETAVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPRV 329 GE ++GV ++ + L + G SG+G+ L++AI L P SG I +G VT + Sbjct: 16 GEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVFRGVDVTRLSGSQ 75 Query: 330 LHAL--GVGHIPEERLRFGTVPNLLIYENAVLKHHHMRPFSDVVFLNVRSMEEHARRIVD 387 L + +G++P+ + P++ + N P + L+ R EE A + + Sbjct: 76 LRMVRRKIGYLPQS---YSLFPHMTVLRNITY------PLEKALGLSRRDAEERAVKYLS 126 Query: 388 DFGVEAPSIYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYIRRQILR 447 G+E + LSGG Q+ L R ++ +PD+L+ PT LD + + + R Sbjct: 127 MLGIE-DLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEALFR 185 Query: 448 QRDEGAA 454 G A Sbjct: 186 VATLGKA 192 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 85.9 bits (211), Expect = 2e-18 Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 5/168 (2%) Query: 7 LELKAITKVFPQVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVD 66 + L+ + K F +VVA V S++ GE LLG +G GKTT + ++ GL P G IL+D Sbjct: 4 IRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILID 63 Query: 67 GREVRFRSPADAIRAGIGMVPQHSMLVENHTVLENL--VLADPSLPFLFPHRAMRRKVEA 124 G +V F+ P D + MV Q+ L + +V +N+ L +RR+V Sbjct: 64 GEDVTFKDPKD---RNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIE 120 Query: 125 ILARYGFPLDLDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVL 172 + LD +LS GQ+QRV + +AL++ V ++DEP S L Sbjct: 121 VAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNL 168 Score = 52.4 bits (124), Expect = 3e-08 Identities = 50/220 (22%), Positives = 87/220 (39%), Gaps = 15/220 (6%) Query: 273 AVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPRVLHA 332 AV+ V +I+ + + G SG G+ + I GL P G I + G VT P+ + Sbjct: 18 AVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILIDGEDVTFKDPKDRNV 77 Query: 333 LGVGHIPEERLRFGTVPNLLIYENAVLKHHHMRPFSDVVFLNVRSMEEHARRI--VDDFG 390 V + P++ +++N H R + ++R ++ ++D Sbjct: 78 AMVFQ------NYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIEVAKLLRIEDLL 131 Query: 391 VEAPSIYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYIRRQILR-QR 449 P G LSGG Q++ L R + R+P + + P LD +R ++ + Q+ Sbjct: 132 DRKP------GQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELKKLQK 185 Query: 450 DEGAAXXXXXXXXXXXXXXXXXXGVMYRGRMVFLAPAEEV 489 D VM +GR+V + EEV Sbjct: 186 DLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEV 225 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 84.0 bits (206), Expect = 8e-18 Identities = 60/194 (30%), Positives = 98/194 (50%), Gaps = 6/194 (3%) Query: 7 LELKAITKVFPQVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVD 66 + L+ I K F + VA + ++ GE V LLG +G GKTT + I+ GL +P +G + D Sbjct: 4 VRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFD 63 Query: 67 GREVRFRSPADAIRAGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAIL 126 GR+V P D + MV Q L + V +N +A P P + R+V Sbjct: 64 GRDVTGLPPKD---RNVAMVFQSYALWPHMRVFDN--IAFPLKIKKLPRDEIVRRVRWAA 118 Query: 127 ARYGFPLDLDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLRE 186 LD + +LS GQ+QRV + +A++ +VL++DEP S L ++ S +++ Sbjct: 119 ELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKK 178 Query: 187 FAAQ-GHAVILISH 199 + G +I ++H Sbjct: 179 LQRRLGVTMIYVTH 192 Score = 45.8 bits (107), Expect = 2e-06 Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 36/173 (20%) Query: 273 AVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPRVLHA 332 A++G+ I+ + + + G SG G+ + + GL RP +G + G VTG P+ + Sbjct: 18 ALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFDGRDVTGLPPKDRNV 77 Query: 333 LGVGHIPEERLRFGTVPNLLIYENAVLKHHHMRPFSDVVF-LNVRSM--EEHARRI---- 385 +++++ L HMR F ++ F L ++ + +E RR+ Sbjct: 78 ------------------AMVFQSYAL-WPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAA 118 Query: 386 ----VDDFGVEAPSIYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLD 434 +D P LSGG Q++ + R + +P++L+ P LD Sbjct: 119 ELLEIDHLLDRYPH------QLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLD 165 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 83.6 bits (205), Expect = 1e-17 Identities = 63/180 (35%), Positives = 91/180 (50%), Gaps = 5/180 (2%) Query: 25 VSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVDGREVRFRSPADAIRAGIG 84 V V G + LLG NGAGKTTL+ IL L P SG V G +V A+ +R+ IG Sbjct: 32 VDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVV--REANNVRSRIG 89 Query: 85 MV-PQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAILARYGFPLDLDAFVWELS 143 +V L + +NL S + P R +R+V+ +L G V S Sbjct: 90 VVLGGERALYWRLSGWDNLWFF--SQLYGIPPREAKRRVKELLEIVGLEEWAHVRVENYS 147 Query: 144 AGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREFAAQGHAVILISHKLEE 203 G +QR+ I + LI +VL+LDEPT L P+ +E+ S++R +G V+L +H + E Sbjct: 148 KGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVLLTTHYMVE 207 Score = 58.5 bits (140), Expect = 4e-10 Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 12/217 (5%) Query: 273 AVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPRVLHA 332 A++GV + R + + G +G G+ LV+ ++ L P SG R+ G V V Sbjct: 28 ALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANNVRSR 87 Query: 333 LGVGHIPEERLRFGTVPNLLIYENAVLKHHHMRPFSDVVFLNVRSMEEHARRIVDDFGVE 392 +GV E L + L ++N FS + + R + + +++ G+E Sbjct: 88 IGVVLGGERALYW----RLSGWDNLWF-------FSQLYGIPPREAKRRVKELLEIVGLE 136 Query: 393 APSIYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYIRRQILRQRDEG 452 + + R N S G Q+L + R + P++L+ PT GLD A +R I R EG Sbjct: 137 EWA-HVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREG 195 Query: 453 AAXXXXXXXXXXXXXXXXXXGVMYRGRMVFLAPAEEV 489 ++ +GR+V P E++ Sbjct: 196 RTVLLTTHYMVEAEELSDRVAIISKGRIVAEGPPEDL 232 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 83.2 bits (204), Expect = 1e-17 Identities = 52/197 (26%), Positives = 99/197 (50%), Gaps = 5/197 (2%) Query: 7 LELKAITKVFPQVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVD 66 ++L+ ++ + ++ DVS + G I ++G NGAGK+TL+ ++G G +L + Sbjct: 6 IKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLFE 65 Query: 67 GREVRFRSPADAIRAGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAIL 126 +V P D + G+ + Q + TV ENL LA L P R ++E + Sbjct: 66 NTDVTHMPPHDRAKIGMTFIFQLENIFRELTVYENLRLAGYDL----PEDVFRDRLEEVF 121 Query: 127 ARY-GFPLDLDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLR 185 + + L LS G+RQ + + +++ V ++DEPT+ L+P+ +E+ S +R Sbjct: 122 SMFPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVR 181 Query: 186 EFAAQGHAVILISHKLE 202 +G+ V+L+ ++ Sbjct: 182 ILNKEGYTVVLVEQNVK 198 Score = 45.8 bits (107), Expect = 2e-06 Identities = 49/213 (23%), Positives = 80/213 (37%), Gaps = 12/213 (5%) Query: 277 VSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPRVLHALGVG 336 VS I R + + G +G G+ L++ + G G + + VT P +G+ Sbjct: 24 VSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLFENTDVTHMPPHDRAKIGMT 83 Query: 337 HIPEERLRFGTVPNLLIYENAVLKHHHMRPFSDVVFLNVRSMEEHARRIVDDFGVEAPSI 396 I + F L +YEN L + + DV + + R+ + G +A Sbjct: 84 FIFQLENIFR---ELTVYENLRLAGYDLP--EDVFRDRLEEVFSMFPRLKERLGQKA--- 135 Query: 397 YARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYIRRQILRQRDEGAAXX 456 G LSGG Q L + + RKP + + PT GL + + + EG Sbjct: 136 ----GTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVRILNKEGYTVV 191 Query: 457 XXXXXXXXXXXXXXXXGVMYRGRMVFLAPAEEV 489 ++ GR+ F PAEE+ Sbjct: 192 LVEQNVKASLEIGDKGVLVVNGRIAFDGPAEEL 224 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 82.8 bits (203), Expect = 2e-17 Identities = 65/187 (34%), Positives = 96/187 (51%), Gaps = 13/187 (6%) Query: 7 LELKAITKVFPQVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVD 66 LE+K+I + + A VS V GEIV LLG NGAGKTT + + GL +P +GSI+ Sbjct: 7 LEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIWQ 66 Query: 67 GREVRFRSPADAIRAGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAIL 126 GR++ + GI VP+ + TV ENL +A + RA +++ Sbjct: 67 GRDITGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRVAAST------RRAKEHFQDSLE 120 Query: 127 ARYG-FPL---DLDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQE--- 179 Y FP+ LS G++Q + I +ALIQ +L++DEP+ L P+ ++ Sbjct: 121 QVYTIFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIY 180 Query: 180 LFSVLRE 186 L S LRE Sbjct: 181 LASRLRE 187 Score = 67.4 bits (163), Expect = 8e-13 Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 20/225 (8%) Query: 273 AVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPRVLHA 332 A+ GVS + + +++ + G +G G+ + I+GL +P +G I +G +TG Sbjct: 21 ALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIWQGRDITGLPAFKRVE 80 Query: 333 LGVGHIPEERLRFGTVPNLLIYENAVLKHHHMRPFSDVVFLNVRSMEEHARRIVDDFGVE 392 G+ H+PE R G P L +YEN V + R +EH + ++ Sbjct: 81 EGISHVPEGR---GIFPRLTVYENL------------RVAASTRRAKEHFQDSLEQVYTI 125 Query: 393 APSIYAR----TGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYIRRQILRQ 448 P + AR G LSGG Q L + R + ++P LL+ P+ GL + R Sbjct: 126 FPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLASRL 185 Query: 449 RDE-GAAXXXXXXXXXXXXXXXXXXGVMYRGRMVFLAPAEEVDVE 492 R+E G VM GR+V ++E+ ++ Sbjct: 186 REELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDELALD 230 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 82.4 bits (202), Expect = 2e-17 Identities = 67/198 (33%), Positives = 105/198 (53%), Gaps = 13/198 (6%) Query: 19 VVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQP----TSGSILVDGREVRFRS 74 V A VSF++R GE++G+ GE+G+GK+TL + GL P G I++DG +V S Sbjct: 22 VKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTSMS 81 Query: 75 PADAIRA----GIGMVPQHSM--LVENHTVLENLVLADPSLPFLFPHRAMRRKVEAILAR 128 A+ R + MV Q +M L +TV + + H A R++V +L Sbjct: 82 EAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEA-RQRVYELLES 140 Query: 129 YGFPLDL-DAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREF 187 G + D + ELS GQ+QRV I AL D++I DEPT+ L ++ ++L++ Sbjct: 141 VGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLKKL 200 Query: 188 AAQGH-AVILISHKLEEI 204 A + + ++ILI+H L I Sbjct: 201 AWEKNLSIILITHDLSVI 218 Score = 63.5 bits (153), Expect = 1e-11 Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 21/174 (12%) Query: 273 AVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRP----VSGVIRLKGHGVTGATPR 328 AV+GVSFT+RR +VLG+AG SG+G+ L +I GL P V G I + G VT + Sbjct: 24 AVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTSMSEA 83 Query: 329 VLHALGVGHIPEERLRFGTVPNLLIYENAVLKHHHM--RPFSDVVFLNVRSMEEHARR-- 384 L ++R+ V + VL + R +V+ ++ R + H R Sbjct: 84 EL---------RRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIH-RGVGRHEARQR 133 Query: 385 ---IVDDFGVEAPSIYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDV 435 +++ G+ LSGG Q++++ ++ +PD+++A PT LDV Sbjct: 134 VYELLESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDV 187 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 80.9 bits (198), Expect = 7e-17 Identities = 66/234 (28%), Positives = 105/234 (44%), Gaps = 41/234 (17%) Query: 12 ITKVFPQVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVD----- 66 + KV V A VS S++ GEI+G++GE+G+GKTTL + GL++P +G + +D Sbjct: 20 LKKVIGYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGE 79 Query: 67 -------------GREVRF-------------------RSPADAIRAGIGMVPQHSMLVE 94 G V+ RS R + MV Q Sbjct: 80 LEEAVSIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSL 139 Query: 95 NHTVLENLVLADPSLPFLFPHRA--MRRKVEAILARYGFPLDL-DAFVWELSAGQRQRVE 151 N + ++ +P + ++R+V +L G + D + +ELS GQRQRV Sbjct: 140 NPRMKVGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVA 199 Query: 152 IVKALIQGSDVLILDEPTSVLTPQETQELFSVLRE-FAAQGHAVILISHKLEEI 204 I +AL +L+LDEPTS L ++ +LRE + G +LI+H + + Sbjct: 200 IARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVV 253 Score = 44.7 bits (104), Expect = 5e-06 Identities = 19/41 (46%), Positives = 30/41 (73%) Query: 273 AVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSG 313 AV+GVS ++++ ++LGV G SG+G+ L + I GL RP +G Sbjct: 29 AVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTG 69 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 80.1 bits (196), Expect = 1e-16 Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 4/179 (2%) Query: 25 VSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVDGREVRFRSPADAIRAGIG 84 VSF + GE+ LLG NGAGKTT + +L L +PTSG + G + R P + +R IG Sbjct: 25 VSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWIAGYSI-VREPGN-VRRVIG 82 Query: 85 MVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAILARYGFPLDLDAFVWELSA 144 +VPQ + + +N+ + + + P R + +L V S Sbjct: 83 LVPQDLTADDEMSGWDNVYI--QARLYGLPSSEARERTREVLDYLDLMEAAHRRVATYSG 140 Query: 145 GQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREFAAQGHAVILISHKLEE 203 G R+++EI +L+ VL LDEPT L + L+ + + ++L +H +EE Sbjct: 141 GMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLKRSAVTILLTTHYMEE 199 Score = 57.0 bits (136), Expect = 1e-09 Identities = 49/220 (22%), Positives = 87/220 (39%), Gaps = 13/220 (5%) Query: 270 GETAVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPRV 329 G AV+GVSF I R ++ + G +G G+ ++ ++ L RP SG + G+ + V Sbjct: 18 GFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWIAGYSIVREPGNV 77 Query: 330 LHALGVGHIPEERLRFGTVPNLLIYENAVLKHHHMRPFSDVVFLNVRSMEEHARRIVDDF 389 +G+ VP L ++ + ++ + + L E R ++D Sbjct: 78 RRVIGL------------VPQDLTADDEMSGWDNVYIQARLYGLPSSEARERTREVLDYL 125 Query: 390 GVEAPSIYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYIRRQILRQR 449 + + + R SGG +KL + + P +L PT GLDV + + R I + Sbjct: 126 DL-MEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLK 184 Query: 450 DEGAAXXXXXXXXXXXXXXXXXXGVMYRGRMVFLAPAEEV 489 ++ RGR+V EE+ Sbjct: 185 RSAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEEL 224 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 79.7 bits (195), Expect = 2e-16 Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 6/198 (3%) Query: 7 LELKAITKVFPQVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVD 66 + L+++TK F VA VS ++ GEI LLG +G GKTT + ++ G P G + + Sbjct: 4 IRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIG 63 Query: 67 GREVRFRSPADAIRAGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAIL 126 R+V P + A MV Q+ L + V +N+ P + R+V Sbjct: 64 SRDVTMLKPYERNTA---MVFQNYALWPHMRVFDNIAYGLKLRK--LPRSEIVRRVRWAA 118 Query: 127 ARYGFPLDLDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQEL-FSVLR 185 LD + +LS GQ+QRV + +A++ +VL++DEP S L ++ ++R Sbjct: 119 ELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVR 178 Query: 186 EFAAQGHAVILISHKLEE 203 G ++ ++H EE Sbjct: 179 LQKRLGVTIVYVTHDQEE 196 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 78.6 bits (192), Expect = 3e-16 Identities = 69/236 (29%), Positives = 110/236 (46%), Gaps = 19/236 (8%) Query: 7 LELKAITKVFPQVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVD 66 LE + + K + V V GE VGL+G NGAGKTTL+ + GL + G +L++ Sbjct: 5 LEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLLN 64 Query: 67 GREVRFRSPADAIRAGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAIL 126 G + +R P R G+G+V + L + V+E L A + + +V+ + Sbjct: 65 GLD-PWREP--RAREGVGVVFERPNLPSSMPVVEFLESAAAII------GSSPSRVDWAI 115 Query: 127 ARYGFPLDLDAFVW----ELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFS 182 G L+ W +LSAG +QR I AL+ L+ DEPTS L P E +E+ Sbjct: 116 RAAG----LEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLR 171 Query: 183 VLREFAAQ-GHAVILISHKLEEIFQXXXXXXXXXXXXXXXEASTASIDKRE-LARM 236 +L + G ++++ SH + E+ + E S + +R LAR+ Sbjct: 172 LLARLNREHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDLFRRAGLARL 227 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 77.8 bits (190), Expect = 6e-16 Identities = 61/188 (32%), Positives = 89/188 (47%), Gaps = 7/188 (3%) Query: 19 VVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVDGREVRFRSPADA 78 V A VSFSV GEI LG NGAGKTT + IL L P G V G +V Sbjct: 25 VEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAGFDVVKERWEVR 84 Query: 79 IRAGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAILARYGFPLDL--- 135 R G+ M+ T ENL + P ++ +++ +L G DL Sbjct: 85 KRIGV-MLSVERGFYWKLTGRENLYYFGRI--YGIPQGELKSRIKEVLDLVGLT-DLGGA 140 Query: 136 DAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREFAAQGHAVI 195 D E+S G + R+ + + L++ +VLILDEPT L P + + V+R A++G + Sbjct: 141 DKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSLASEGRTIF 200 Query: 196 LISHKLEE 203 + +H + E Sbjct: 201 ITTHNMVE 208 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 76.3 bits (186), Expect = 2e-15 Identities = 53/190 (27%), Positives = 95/190 (50%), Gaps = 12/190 (6%) Query: 17 PQVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLY-----QPTSGSILVDGREVR 71 P ++ ++S SV G I L+G NGAGKTTL+ + G+ + T GSI ++G ++ Sbjct: 16 PFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDIT 75 Query: 72 FRSPADAIRAGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAILARY-G 130 R P + R G+ V + + + T ENLV + A R + ++L+ + Sbjct: 76 NREPDEIARRGVIYVMEGRRIFKELTTEENLV------SVAYAAGASRDDIRSVLSYFPR 129 Query: 131 FPLDLDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREFAAQ 190 L LS G++Q + I AL+ +L+LDEP+ L P+ T ++++ ++ + Sbjct: 130 LKERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHRE 189 Query: 191 GHAVILISHK 200 IL++ + Sbjct: 190 EGLTILLAEQ 199 Score = 60.1 bits (144), Expect = 1e-10 Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 20/226 (8%) Query: 274 VEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGL-----RRPVSGVIRLKGHGVTGATPR 328 ++ +S ++ + + + G +G G+ L++A++G+ R G I+L+G +T P Sbjct: 21 IKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNREPD 80 Query: 329 VLHALGVGHIPEERLRFGTVPNLLIYENAVLKHHHMRPFSDVVFLNVRSMEEHARRIVDD 388 + GV ++ E R F L EN V + D ++RS+ + R+ + Sbjct: 81 EIARRGVIYVMEGRRIF---KELTTEENLVSVAYAAGASRD----DIRSVLSYFPRLKER 133 Query: 389 FGVEAPSIYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYIRRQI-LR 447 G +A GNLSGG Q L + + +P LL+ P+ GL T I I + Sbjct: 134 LGEKA-------GNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKML 186 Query: 448 QRDEGAAXXXXXXXXXXXXXXXXXXGVMYRGRMVFLAPAEEVDVEE 493 R+EG V+ GR+V AEE+ +++ Sbjct: 187 HREEGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEELRLDK 232 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 73.9 bits (180), Expect = 8e-15 Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 11/203 (5%) Query: 7 LELKAITKVFPQVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYG--LYQPTSGSIL 64 LE+K +T + V + V F ++ GE+ ++G NG+GK++L ++ G +Y+ G IL Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 65 VDGREVRFRSPADAIRAGIGMVPQHSMLVENHTVLENLVLA--DPSLPFLFPHRAMRRKV 122 +DG ++ P + GI M Q + L +L++A + L + K+ Sbjct: 63 LDGESIKELPPEERALKGIFMAQQDPPQIPG-VRLSSLIIAFVNKRLGAQDLSKPADPKI 121 Query: 123 EAILARYGFPLDLDAFVWE------LSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQE 176 + Y L LD + S G+++R E+++A+I ++ILDEP S L Sbjct: 122 VKRMYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDG 181 Query: 177 TQELFSVLREFAAQGHAVILISH 199 + + +++ G V+LI+H Sbjct: 182 LKIVAEFIKQLRDSGRGVMLITH 204 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 73.9 bits (180), Expect = 8e-15 Identities = 57/180 (31%), Positives = 90/180 (50%), Gaps = 10/180 (5%) Query: 23 SDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVDGREVRFRSPADAIRAG 82 S V+ R +V ++G NGAGKTT + + GL +P G + +DG E R + + Sbjct: 19 SGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLDGFEATGR--PEMVGRY 76 Query: 83 IGMVPQH--SMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAILARYGFPLD-LDAFV 139 G VPQ+ + + TV E + SL RA R VE +L G + L++ + Sbjct: 77 AGYVPQNPSAPKLSPMTVRE---FVETSLRLRGVTRARERAVE-VLHTLGIRGEVLESRL 132 Query: 140 WELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREFAAQGHAVILISH 199 WELS G QRV I +A+ +L++DEP + + P E+ ++ A + V++ SH Sbjct: 133 WELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAGLARE-RLVLMTSH 191 Score = 49.7 bits (117), Expect = 2e-07 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 16/178 (8%) Query: 270 GETAVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPRV 329 GE + GV+ R ++ + G +G G+ ++AI GL +P G + L G TG V Sbjct: 14 GEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLDGFEATGRPEMV 73 Query: 330 LHALGVGHIPEERLRFGTVPNLLIYENAVLKHHHMRPF--SDVVFLNVRSMEEHARRIVD 387 G++P+ + P L +R F + + V E A ++ Sbjct: 74 --GRYAGYVPQN----PSAPK--------LSPMTVREFVETSLRLRGVTRARERAVEVLH 119 Query: 388 DFGVEAPSIYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYIRRQI 445 G+ + +R LS G +Q++ + R ++ P +LV P +D I R I Sbjct: 120 TLGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARII 177 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 72.8 bits (177), Expect = 2e-14 Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 9/188 (4%) Query: 16 FPQVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVDGREVRFRSP 75 + +V A VSFS I +LG +G GKTT++ ++ GL +P G + G + P Sbjct: 15 YGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFGGVDYTGLPP 74 Query: 76 ADAIRAGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAILARYGF--PL 133 R +G V Q L + TV +N+ + F +RR+VE L G P Sbjct: 75 E---RRSVGFVFQDLALFPHMTVYDNVAFGLRARG--FSGGEVRRQVEWALETVGLTPPR 129 Query: 134 D-LDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREFAAQ-G 191 + + V LS GQ+QRV + +A+ VL+LDEP S L + Q L + L+ + G Sbjct: 130 EFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQRKLG 189 Query: 192 HAVILISH 199 +I ++H Sbjct: 190 STMIYVTH 197 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 68.9 bits (167), Expect = 3e-13 Identities = 52/178 (29%), Positives = 88/178 (49%), Gaps = 5/178 (2%) Query: 25 VSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVDGREVRFRSPADAIRAGIG 84 VS SV+ GEI L G NGAGKTT + +L GL SG V G + + + ++ +G Sbjct: 33 VSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVD-PWGGGFERVKGEVG 91 Query: 85 MVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAILARYGFPL-DLDAFVWELS 143 +P+ + + E T +EN++ R + VE + G DL S Sbjct: 92 YLPEDASVYERLTGMENILF---YARLYSGWRDVEELVENAVFYSGLSREDLARRAGGYS 148 Query: 144 AGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREFAAQGHAVILISHKL 201 G ++R+ + L+ +++LDEPTS + P + + +LR + +G A+++ +H L Sbjct: 149 KGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSREGRAILVTTHDL 206 Score = 56.2 bits (134), Expect = 2e-09 Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 18/230 (7%) Query: 269 RGETAVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPR 328 +G + GVS +++ ++ +AG++G G+ + + GL SG R+ G G Sbjct: 25 KGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPWGGGFE 84 Query: 329 VLHALGVGHIPEERL---RFGTVPNLLIYENAVLKHHHMRPFSDVVFLNVRSMEEHARRI 385 + VG++PE+ R + N+L Y ++ R +EE Sbjct: 85 RVKG-EVGYLPEDASVYERLTGMENILFYAR--------------LYSGWRDVEELVENA 129 Query: 386 VDDFGVEAPSIYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYIRRQI 445 V G+ + R G S G ++L+LG + KP L+V PT G+D A+ I++ + Sbjct: 130 VFYSGLSREDLARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKIL 189 Query: 446 LRQRDEGAAXXXXXXXXXXXXXXXXXXGVMYRGRMVFLAPAEEVDVEEIG 495 EG A +++ G V P + E G Sbjct: 190 RGLSREGRAILVTTHDLALAEEIADRVTIIHGGSTVASGPPYRLVEEYCG 239 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 68.2 bits (165), Expect = 5e-13 Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 8/189 (4%) Query: 19 VVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVDGREV---RFRSP 75 V A +V+ + G+ +GL+GE+G+GKTT ++ L +PT G I DG +V R R Sbjct: 49 VKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGL 108 Query: 76 AD-AIRAGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAILARYGF-PL 133 + RA I + L T+ ++A+P ++ + ++L + G Sbjct: 109 KEFRRRAQIIFQDPYGSLNPRKTIFN--LIAEPIKVHGIKVGDLQEYIVSLLYQVGLNET 166 Query: 134 DLDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREFAAQ-GH 192 L + E S GQRQR+ I + L + ++LDEPTS L ++ ++L++ + Sbjct: 167 HLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSL 226 Query: 193 AVILISHKL 201 + ISH L Sbjct: 227 TYLFISHDL 235 Score = 56.2 bits (134), Expect = 2e-09 Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 35/232 (15%) Query: 273 AVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSG--------VIRLKGHGVTG 324 AV+ V+ I R + LG+ G SG+G+ I L P G V++L+G G+ Sbjct: 51 AVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGLKE 110 Query: 325 ATPR--VLHALGVGHIPEERLRFGTVPNLLIYENAVLKHHHMRPFSDVVFLNVRSMEEHA 382 R ++ G + + T+ NL+ +K H ++ V ++E+ Sbjct: 111 FRRRAQIIFQDPYGSLNPRK----TIFNLIA---EPIKVHGIK---------VGDLQEYI 154 Query: 383 RRIVDDFGVEAPSIYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYIR 442 ++ G+ +Y SGG Q++ + R ++ KP+ +V PT LDV ++ Sbjct: 155 VSLLYQVGLNETHLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVS----VQ 210 Query: 443 RQILR-----QRDEGAAXXXXXXXXXXXXXXXXXXGVMYRGRMVFLAPAEEV 489 QIL QR VMY G++V AEEV Sbjct: 211 AQILNLLKDLQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEV 262 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 67.4 bits (163), Expect = 8e-13 Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 19/213 (8%) Query: 2 PKVQSLELKAITKVFPQVVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSG 61 P SL + + + V A V +R GE++ ++GE+G GKTTL + G+ +P+ G Sbjct: 18 PVYYSLLKRILGRPDAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDG 77 Query: 62 SILVDGREVR-FRSPAD-AIRAGIGMVPQ------HSMLVENHTVLENLVLADPSLPFLF 113 +I G + R D +R + MV Q ++ V E LV+ L Sbjct: 78 AIYYRGELLTPHRLARDRRLRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHG-----LA 132 Query: 114 PHRAMRRKVEAILARYGFPLDLDAFVW----ELSAGQRQRVEIVKALIQGSDVLILDEPT 169 RR+ +L G + F W +LS GQRQRV I + L+ +V++ DEP Sbjct: 133 RGEEARRRAVEMLETVGLTPGRE-FYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPV 191 Query: 170 SVLTPQETQELFSVLREFAAQ-GHAVILISHKL 201 S++ + ++ ++ + G ++LI+H + Sbjct: 192 SMIDVSMRASILDLIMDYHRRTGATIVLITHDI 224 Score = 55.1 bits (131), Expect = 4e-09 Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 24/220 (10%) Query: 273 AVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPRVLHA 332 AV+GV IR +VL + G SG G+ L +AI G+ P G I +G +T H Sbjct: 37 AVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTP------HR 90 Query: 333 LGVGHIPEERLRFGTVPNLLIYENAVLKHHHMRPFSD-----VVFLNVRSMEEHARRIVD 387 L +L+ +++++ + P D +V + EE RR V+ Sbjct: 91 LARDRRLRRKLQ-------MVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVE 143 Query: 388 DFGVEAPS-----IYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYIR 442 + + + LSGG Q++ + R + +P+++VA P +DV I Sbjct: 144 MLETVGLTPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASIL 203 Query: 443 RQIL-RQRDEGAAXXXXXXXXXXXXXXXXXXGVMYRGRMV 481 I+ R GA VMY G++V Sbjct: 204 DLIMDYHRRTGATIVLITHDIAVARAVADRIAVMYLGKIV 243 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 66.2 bits (160), Expect = 2e-12 Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 15/176 (8%) Query: 25 VSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVDGREVRFRSPADAIRAGIG 84 VSFS+ G +V LLG NG+GKTTL+ +L G+ +P+ G + V G SP +R +G Sbjct: 25 VSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEVCG------SPPGRVRRMLG 78 Query: 85 MVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAILARYGFPLDLDAFVW---- 140 P + +E +L + RR E +LA G + + W Sbjct: 79 YAPASPEVDPRLKAVEVALLYRYGVSEGVAWG--RRDWEEVLAALG-EMGVGELAWRRWG 135 Query: 141 ELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREFAAQGHAVIL 196 ELS+GQR+ V + L + + +LDEP S L + + VLR + +G A I+ Sbjct: 136 ELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLR--SLRGRATIV 189 Score = 43.9 bits (102), Expect = 9e-06 Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 18/164 (10%) Query: 274 VEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATP-RVLHA 332 + GVSF++ ++ + G +G+G+ L+ + G+ +P G + V G+ P RV Sbjct: 22 LRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVE-----VCGSPPGRVRRM 76 Query: 333 LGVGHI-PEERLRFGTVPNLLIYENAVLKHHHMRPFSDVVFLNVRSMEEHARRIVDDFGV 391 LG PE R V L+Y V S+ V R EE + + GV Sbjct: 77 LGYAPASPEVDPRLKAVEVALLYRYGV---------SEGVAWGRRDWEE-VLAALGEMGV 126 Query: 392 EAPSIYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDV 435 + R G LS G + +IL ++R+P L + P LDV Sbjct: 127 -GELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDV 169 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 66.2 bits (160), Expect = 2e-12 Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 13/186 (6%) Query: 25 VSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQ-----PTSGSILVDGREVRFRSPADAI 79 +SF + G + ++G +G+GK+TL+ ++ L G + ++ V P + I Sbjct: 24 ISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVMKEDPYN-I 82 Query: 80 RAGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAILARYGFPLD----- 134 R GMV Q + T+ EN+ + P L L ++ ++ + D Sbjct: 83 RRYTGMVFQEPNPFPHMTIYENVAIG-PKLHGLAKNKKELDEIVEWALKMAHLWDEVKDR 141 Query: 135 LDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREFAAQGHA- 193 L + +LS GQRQR+ + +AL VL+LDEPT+ + P T ++ + E+A + A Sbjct: 142 LSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKEEMAT 201 Query: 194 VILISH 199 VI+++H Sbjct: 202 VIIVTH 207 Score = 46.6 bits (109), Expect = 1e-06 Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 28/230 (12%) Query: 274 VEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGL-----RRPVSGVIRLKGHGVTGATPR 328 ++G+SF + V + G SG+G+ L+ I L V G + + V P Sbjct: 21 LKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVMKEDPY 80 Query: 329 VLHALGVGHIPEERLRFGTVPNLLIYENAVL--KHHHM----RPFSDVV--FLNVRSMEE 380 + G + +E F P++ IYEN + K H + + ++V L + + + Sbjct: 81 NIRRY-TGMVFQEPNPF---PHMTIYENVAIGPKLHGLAKNKKELDEIVEWALKMAHLWD 136 Query: 381 HARRIVDDFGVEAPSIYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEY 440 + + D+ + LSGG Q+L L R ++ KP +L+ PT +D +T Sbjct: 137 EVKDRLSDYPHQ----------LSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVK 186 Query: 441 IRRQILR-QRDEGAAXXXXXXXXXXXXXXXXXXGVMYRGRMVFLAPAEEV 489 I + I+ ++E A +Y GR++ P +E+ Sbjct: 187 IEQSIVEYAKEEMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKEL 236 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 65.5 bits (158), Expect = 3e-12 Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 7/182 (3%) Query: 24 DVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVDGREVRFRSPADAIRAGI 83 DVS +V G + G++G NGAGKTTL L GLY+ G + + G V R+ R + Sbjct: 26 DVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALLGEPVE-RAGGSLFRR-V 83 Query: 84 GMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAILARYGFPLDLDAFVWELS 143 +P+ N T E L L ++ + +E G L V S Sbjct: 84 AYLPEDGEPYRNMTGHEFLRL----YASIYGVEDLEGYLEEASRLSGLGGRLGERVRSYS 139 Query: 144 AGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREFAAQ-GHAVILISHKLE 202 G R+R+ + L + +LDEPT+ L P + + +L+E++ + G V+L SH + Sbjct: 140 KGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERHGVTVLLSSHNMY 199 Query: 203 EI 204 E+ Sbjct: 200 EV 201 Score = 47.0 bits (110), Expect = 1e-06 Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 18/183 (9%) Query: 270 GETAVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPRV 329 G ++ VS T+ R V GV G +G G+ L + GL R G + L G V A + Sbjct: 20 GRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALLGEPVERAGGSL 79 Query: 330 LHALGVGHIPEERLRFGTVPNLLIYENAVLKHHHMRPFSDVVFL-NVRSMEEHARRIVDD 388 V ++PE+ + + H +R ++ + + ++ E A R+ Sbjct: 80 FRR--VAYLPEDGEPYRNMTG----------HEFLRLYASIYGVEDLEGYLEEASRLSGL 127 Query: 389 FGVEAPSIYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYIRRQILRQ 448 G + R + S G ++L++ ++ KP L V PT GLD + IRR +L++ Sbjct: 128 GG----RLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRR-LLKE 182 Query: 449 RDE 451 E Sbjct: 183 YSE 185 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 62.8 bits (151), Expect = 2e-11 Identities = 55/185 (29%), Positives = 87/185 (47%), Gaps = 21/185 (11%) Query: 30 RAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVDGREVRFRSPADAIRAGIGMVPQH 89 R G++VGLLG NG GKTT + IL G +P G V+G E + R G + Sbjct: 104 REGQVVGLLGRNGTGKTTALRILAGELKPNLGR--VEGGEPEWDEILKRFR-GSELQTYF 160 Query: 90 SMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAILAR---YGFPLDL----------D 136 LV+ + + + +P R ++ +V +L R G L+L D Sbjct: 161 RKLVDGKLRVAHKIQYVELVP-----RRLKGRVRDLLKRADERGVALELAEQVGLDKVFD 215 Query: 137 AFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREFAAQGHAVIL 196 V +LS G+ Q++ IV L + ++V I DEP+S L +E + ++ A G V++ Sbjct: 216 RDVRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAARPGAYVMV 275 Query: 197 ISHKL 201 + H L Sbjct: 276 VEHDL 280 Score = 56.2 bits (134), Expect = 2e-09 Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 18/168 (10%) Query: 32 GEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVDGREVRFRSPADAIRAGIGMVPQH-- 89 GE++G+ G NG GKTT + L G +P G++ ++R + PQ+ Sbjct: 383 GEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYVEDLR-----------VSYKPQYIS 431 Query: 90 SMLVENHTVLENLVLADPSLPFLFPHRAMRRKVEAILARYGFPLDLDAFVWELSAGQRQR 149 + + TV + L A+P++ L P + + ++ R L+ V LS G+ Q+ Sbjct: 432 PESLPDATVEQVLKAANPAI--LAPGSWLNLE---LVKRMRLDKLLERRVRTLSGGELQK 486 Query: 150 VEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREFAAQGHAVILI 197 V + AL + +DV +LDEP++ L +E + +R A L+ Sbjct: 487 VAVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALV 534 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 58.9 bits (141), Expect = 3e-10 Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 14/166 (8%) Query: 37 LLGENGAGKTTLMNILYGLYQPTSGSILVDGREVRFRSPADAIRAGIGMVPQ-HSMLVEN 95 L G G GK+T++ + GL G L E R + +VPQ + + + + Sbjct: 34 LAGPTGGGKSTILRVAAGLATRIYGGYLRGEVEARGKPV---------LVPQDYDLFILS 84 Query: 96 HTVLENLVLADPSLPFLFPHRAMRRKVEAILARYGFPLDLDAFVWELSAGQRQRVEIVKA 155 T E L + P RR+ + G LD V +LSAG+RQRV I A Sbjct: 85 LTPREELEYCYEASGL--PPWEARREAVRLAEELGIEDLLDRRVSKLSAGERQRVAIASA 142 Query: 156 LIQGSDVLILDEPTSVLTPQETQELFSVLREFAAQGHAVILISHKL 201 L G++VL++DEP + P + L +LR +G V++ H++ Sbjct: 143 LALGAEVLLMDEPLAYQDPLGVESLIRLLRRLDVEG--VVVAEHRV 186 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 58.9 bits (141), Expect = 3e-10 Identities = 58/211 (27%), Positives = 90/211 (42%), Gaps = 29/211 (13%) Query: 19 VVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSIL----------VDGR 68 V A VSFS+ GE+ L+GE+G GKTT + L + T G + ++ R Sbjct: 47 VKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERR 106 Query: 69 EVRF------------RSPADAIRAGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHR 116 V+ R +R + +V Q N +L DP L + Sbjct: 107 GVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNA 166 Query: 117 AMR-----RKVEAILARYGFPLDLDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSV 171 R R +EA+ +D + +LS GQRQRV I +A I +++ DEP S+ Sbjct: 167 REREEMVARMLEAVKLTPASDF-MDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSM 225 Query: 172 LTPQETQELFSVLREFAAQ-GHAVILISHKL 201 L E+ +L F + G +++ I+H L Sbjct: 226 LDVSIRAEILELLLGFREKLGTSLLFITHDL 256 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 55.5 bits (132), Expect = 3e-09 Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 35/206 (16%) Query: 19 VVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVDGREVRFRSPADA 78 V A VS SV GE + ++GE+G+GK+TL + L P +V GR Sbjct: 20 VRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGR--IVGGR---------I 68 Query: 79 IRAGIGMVPQHSMLVENHTVLE-NLVLADPSLPFLFPHRAMRRKVEAILARYGF------ 131 + +G+ ++ + + E +V DP+ +L P+R + ++ L +G Sbjct: 69 LYSGVDLLSLAGEELRRYRGREIGMVFQDPTA-YLDPYRTVGSQIAESLLEHGLASSGSE 127 Query: 132 --------------PLD-LDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQE 176 P D + +LS GQRQRV I A+ +LI DEPT+ L Sbjct: 128 AESMAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVV 187 Query: 177 TQELFSVLREFAAQ-GHAVILISHKL 201 ++ ++++ + G V+L++H + Sbjct: 188 QAKIMDLMKKLQEERGLTVMLVTHDI 213 Score = 50.8 bits (120), Expect = 7e-08 Identities = 52/230 (22%), Positives = 93/230 (40%), Gaps = 24/230 (10%) Query: 273 AVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPRVLHA 332 AV+GVS ++ + + + + G SG+G+ L +I L P R+ G + + +L Sbjct: 22 AVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPG---RIVGGRILYSGVDLLSL 78 Query: 333 LGVGHIPEERLRFGTVPNLLIYENAVLKHHHMRPFSDVVFLNVRSMEEH----------- 381 G EE R+ +++++ ++ P+ V S+ EH Sbjct: 79 AG-----EELRRYRGREIGMVFQDPTA---YLDPYRTVGSQIAESLLEHGLASSGSEAES 130 Query: 382 -ARRIVDDFGVEAPSIYARTGNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEY 440 A ++ G+ LSGG Q++ + ++ +P +L+A PT LDV Sbjct: 131 MAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAK 190 Query: 441 IRRQILR-QRDEGAAXXXXXXXXXXXXXXXXXXGVMYRGRMVFLAPAEEV 489 I + + Q + G VMY G +V + PAE+V Sbjct: 191 IMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDV 240 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 55.1 bits (131), Expect = 4e-09 Identities = 56/182 (30%), Positives = 91/182 (50%), Gaps = 19/182 (10%) Query: 25 VSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTSGSILVDGREVRFRSPADAIRAGIG 84 VS ++ GE V + G NG+GKTTL+ + GL +P+ G V + P R +G Sbjct: 23 VSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRG-------RVSWGCPRGP-RGCVG 74 Query: 85 MVPQHSMLVENHTVLENL----VLADPSLPFLFPHRAMRRKVEAILARYGFPLDLDAFVW 140 V M+ + TV EN+ L SL +P A ++ L +YG L Sbjct: 75 YVGHTPMVYGDLTVWENVEFFSSLHGGSLGD-YPLAAEAWRLLG-LEKYGSHL-----AS 127 Query: 141 ELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREFAAQGHAVILISHK 200 +LS G R+R+++V+AL+ +L+LDE + L ++ L +LR +G A+++ + Sbjct: 128 QLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLLRLALGEGLALLMTTPL 187 Query: 201 LE 202 LE Sbjct: 188 LE 189 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 53.5 bits (127), Expect = 1e-08 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 31/205 (15%) Query: 19 VVANSDVSFSVRAGEIVGLLGENGAGKTTLMNILYGLYQPTS----GSILVDGREVRFRS 74 V A V V GEI+ ++GE+G GK+TL + + + GSI+++ + + Sbjct: 22 VNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAVIEKGSIILN---LGSGN 78 Query: 75 PADAIRAGIGMVPQHSMLVENHTVLENLVLADPSLPFLFPHRAMR----------RKVEA 124 D +R LV+ + +++ DPS H+ + R+VE Sbjct: 79 TVDLVRLS------EDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDHVSGEKRRVEK 132 Query: 125 I----LARYGFP---LDLDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQET 177 I L + P + L+ + ELS G +QR+ I +LI ++I DEPT+ L Sbjct: 133 IAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQ 192 Query: 178 QELFSVLREFAAQ-GHAVILISHKL 201 ++ +L + +ILI+H L Sbjct: 193 AQILKMLSRLREELETTIILITHNL 217 Score = 49.7 bits (117), Expect = 2e-07 Identities = 48/217 (22%), Positives = 90/217 (41%), Gaps = 6/217 (2%) Query: 273 AVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPRVLHA 332 A++GV + + ++L + G SG G+ L +I + P + VI + + + Sbjct: 24 ALDGVELDVYQGEILAIVGESGCGKSTLARSIARIL-PSNAVIEKGSIILNLGSGNTVDL 82 Query: 333 LGVGHIPEERLRFGTVPNLLIYENAVLK--HHHMRPFSDVVFLNVRSMEEHARRIVDDFG 390 + + ++R V + +A L H + +D V R +E+ A+ I+ Sbjct: 83 VRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDHVSGEKRRVEKIAQEILKKLM 142 Query: 391 VEAPSIYART--GNLSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYIRRQILRQ 448 + AP + LSGG Q++++ + +P +++A PT LDV I + + R Sbjct: 143 MPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKMLSRL 202 Query: 449 RDE-GAAXXXXXXXXXXXXXXXXXXGVMYRGRMVFLA 484 R+E VMY G +V +A Sbjct: 203 REELETTIILITHNLAVAAEIADRIAVMYAGHVVEVA 239 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 49.3 bits (116), Expect = 2e-07 Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 32/192 (16%) Query: 24 DVSFSVRAGEIVGLLGENGAGKTTLMNILYGL--------YQPTSGSILVDGREVRFRSP 75 DV+ +V G + ++G +GAGKTTL+ ++ G Y+P SG + ++ + Sbjct: 458 DVNITVNPGSVAAVVGASGAGKTTLLRMILGKALGIGGEGYRPDSGVV-----KIPTNTK 512 Query: 76 ADAIRAGIGMVPQHSMLVENHTVLENLV--LADPSLPFLFPHRAMRRKVEAILA-RYGFP 132 A A+ G + P T+LE++ L DP VE + + G Sbjct: 513 AAALLPG-ELEPSFG----GETLLEHVASKLGDPGAA-----------VEVLSSVGLGDA 556 Query: 133 LDLDAFVWELSAGQRQRVEIVKALIQGSDVLILDEPTSVLTPQETQELFSVLREFAAQGH 192 + A ELS GQ++R ++ L + ++L++DE + L P + + L + A Sbjct: 557 IFFRASFGELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLTARRIARKLGKLARSKG 616 Query: 193 AVILISHKLEEI 204 +++S EI Sbjct: 617 ITLIVSTNRPEI 628 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 48.1 bits (113), Expect = 5e-07 Identities = 58/227 (25%), Positives = 92/227 (40%), Gaps = 11/227 (4%) Query: 273 AVEGVSFTIRRHQVLGVAGVSGNGQKELVEAITGLRRPVSGVIRLKGHGVTGATPRVLHA 332 A+E VSF I R + + G +G G+ A+T L P ++ K + RV Sbjct: 28 AIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGRIVEGKIYYYPEPGRRV-DI 86 Query: 333 LGVGHIPEERLRFGTVPNLLIYENAVLKHHHMRPF----SDVVFLNVRSMEEHARRIVDD 388 + + R+R + + +A L + + + + VRS+ E RR V Sbjct: 87 MSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETMLAHGRVRSLREGVRRAVGV 146 Query: 389 FG-VEAPSIYARTGN----LSGGNIQKLILGREMSRKPDLLVASHPTYGLDVGATEYIRR 443 V P R + LSGG Q+ ++G +S +P LL+A PT LDV I Sbjct: 147 LKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLIADEPTTALDVTIQAQIMD 206 Query: 444 QILR-QRDEGAAXXXXXXXXXXXXXXXXXXGVMYRGRMVFLAPAEEV 489 + + +R+ G VMY G +V AP +E+ Sbjct: 207 LLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEEAPVDEL 253 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 466,304 Number of Sequences: 1700 Number of extensions: 20666 Number of successful extensions: 241 Number of sequences better than 1.0e-04: 40 Number of HSP's better than 0.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 105 Number of HSP's gapped (non-prelim): 94 length of query: 505 length of database: 492,079 effective HSP length: 81 effective length of query: 424 effective length of database: 354,379 effective search space: 150256696 effective search space used: 150256696 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719588|ref|YP_003875120.1| ABC transporter substrate-binding protein [Spirochaeta thermophila DSM 6192] (412 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430860|ref|NP_146932.2| hypothetical protein APE_0061.1 [A... 231 2e-62 gi|118431933|ref|NP_148712.2| membrane lipoprotein family protei... 46 1e-06 >gi|118430860|ref|NP_146932.2| hypothetical protein APE_0061.1 [Aeropyrum pernix K1] Length = 429 Score = 231 bits (589), Expect = 2e-62 Identities = 150/424 (35%), Positives = 219/424 (51%), Gaps = 61/424 (14%) Query: 31 LAVGLAMALILTGCARKEEGAV--GEKTLKAGFVYVGPVGDYGWSHAHDQGRKYVEEKFP 88 L VG IL+ +++ A G +LKA ++YVGPV DYGW+ AH G K Sbjct: 19 LVVGGLGGYILSAPRKQQSQAPTGGGLSLKALWIYVGPVEDYGWTRAHHDGHMKARSKLG 78 Query: 89 WLKTVYVESVAPGDAGRIIDRLVNEEQCDVVFTTSFDYMDETVKAAQRYPDTILMHCSG- 147 WL++ Y+E+V+ A +I ++ E D VF TS+ YMD + A YPD HCSG Sbjct: 79 WLESSYIETVSEDKAYDVIKAQLDAEGYDAVFATSYGYMDALKRLATEYPDVKFYHCSGP 138 Query: 148 ---FKRAENLGTYFAELYQIYYLNGLMAGALTASGKVGYVGAYPIPEVVRHINAYAL--- 201 F+ N+ TYFAE YQ+YYLNGL A T + +GY+ A+ IPEVVRHINAY + Sbjct: 139 WEEFRDLPNVSTYFAEFYQLYYLNGLAAAGATETCNLGYIPAFLIPEVVRHINAYVIGAV 198 Query: 202 -GVKAVNPDAE-VHVRWIY-----SWYDPNKAREAAEALV-AEGVDVLAFTEDSPAVIEV 253 G K + + ++R + SW+ P+KAR+AA LV VDV+A+TED+ AV+E Sbjct: 199 EGAKVLGKCGDGRNIRVLVTPPLNSWFAPDKARDAARLLVETYDVDVIAYTEDTTAVLET 258 Query: 254 AQEYTEKGKPVYAFSHYSPMQRFGED------AVVSGQLVDWGIMYEKILKDIHDGTWKS 307 A+ Y ++G VY+FSHY+ M + + + ++GQ+ DWG +Y +L G ++ Sbjct: 259 AESYWDQGVKVYSFSHYTDMYAYFKSQGKTLRSHLTGQISDWGPIYVDLLVRQAAGVYEK 318 Query: 308 EDLWWR--------------XXXXXXXXXXXFDEPINEKFVPRLKELTVETPDLGKISVY 353 D+W R + P+N + +P + Sbjct: 319 IDIWARLGDYTPIRWAKSPSESLAGSPEGAVYLAPLNTEAIP--------------AKML 364 Query: 354 DLVMKRYEQMKTLEFEPFTGPV----YDQKG------ALRIPEGVRATKDELLSMDYHVD 403 + + RYEQMK L FEPFTGP+ D +G L++ EG R ++ L MD+ + Sbjct: 365 EHIKLRYEQMKELLFEPFTGPIRGYSIDAQGRPQEDPKLKVREGERLGRNPLWVMDWLHE 424 Query: 404 NVVT 407 N T Sbjct: 425 NAET 428 >gi|118431933|ref|NP_148712.2| membrane lipoprotein family protein [Aeropyrum pernix K1] Length = 447 Score = 46.2 bits (108), Expect = 1e-06 Identities = 43/217 (19%), Positives = 86/217 (39%), Gaps = 16/217 (7%) Query: 106 IIDRLVNEEQCDVVFTTSFDYMDETVKAAQRYPDT--ILMHCSGFKRAENLGTYFAELYQ 163 ++D + D++ F + + K A RYP+ L+ + +R +N+ +Y + Sbjct: 127 VLDAASRSGEYDLIVLVGFLWQEPLEKVAPRYPEQKYALIDAATRERYDNVASYLFREQE 186 Query: 164 IYYLNGLMAG--------ALTASGKVGYVGAYPIPEVVRHINAYALGVKAVNP--DAEVH 213 + L G++A A K G V IP + R Y GV+ N +V Sbjct: 187 VASLVGIIAADIANNISKATGEEAKAGAVAGMDIPPLWRFHIGYLYGVQYYNQAMGTDVE 246 Query: 214 VRWIYS--WYDPNKAREAAEALVAEGVDVLAFTEDSPAV--IEVAQEYTEKGKPVYAFSH 269 + W Y+ + DP + AE ++ +GV V V +E +G ++ Sbjct: 247 MVWTYTGRFDDPTLGKTTAEQMLQQGVRVFYGVAGLTHVGMFNAVKEAAARGVIAFSIGQ 306 Query: 270 YSPMQRFGEDAVVSGQLVDWGIMYEKILKDIHDGTWK 306 + + + ++ L + +KD+ +G ++ Sbjct: 307 DASQEWYDPQTIIISGLKRVDVAVYTAIKDVVEGRFR 343 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 423,408 Number of Sequences: 1700 Number of extensions: 19225 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 2 length of query: 412 length of database: 492,079 effective HSP length: 79 effective length of query: 333 effective length of database: 357,779 effective search space: 119140407 effective search space used: 119140407 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719589|ref|YP_003875121.1| hypothetical protein STHERM_c19130 [Spirochaeta thermophila DSM 6192] (272 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.146 0.477 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 305,084 Number of Sequences: 1700 Number of extensions: 13634 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 272 length of database: 492,079 effective HSP length: 75 effective length of query: 197 effective length of database: 364,579 effective search space: 71822063 effective search space used: 71822063 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719590|ref|YP_003875122.1| hypothetical protein STHERM_c19140 [Spirochaeta thermophila DSM 6192] (359 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.143 0.481 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 452,068 Number of Sequences: 1700 Number of extensions: 23785 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 0 length of query: 359 length of database: 492,079 effective HSP length: 78 effective length of query: 281 effective length of database: 359,479 effective search space: 101013599 effective search space used: 101013599 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719591|ref|YP_003875123.1| transporter [Spirochaeta thermophila DSM 6192] (268 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 140 4e-35 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 131 2e-32 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 127 4e-31 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 125 9e-31 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 125 1e-30 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 117 4e-28 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 106 5e-25 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 104 2e-24 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 99 1e-22 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 96 1e-21 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 94 4e-21 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 89 9e-20 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 87 6e-19 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 86 8e-19 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 85 2e-18 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 82 1e-17 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 82 1e-17 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 82 2e-17 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 81 2e-17 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 78 3e-16 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 75 1e-15 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 73 7e-15 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 72 1e-14 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 71 3e-14 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 69 1e-13 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 69 2e-13 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 68 3e-13 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 67 4e-13 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 66 1e-12 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 64 3e-12 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 63 9e-12 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 63 9e-12 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 61 3e-11 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 59 2e-10 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 59 2e-10 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 55 1e-09 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 55 2e-09 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 53 9e-09 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 52 1e-08 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 46 1e-06 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 41 3e-05 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 140 bits (352), Expect = 4e-35 Identities = 79/207 (38%), Positives = 116/207 (56%), Gaps = 3/207 (1%) Query: 21 AKLQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRAL 80 A ++ EGI RFG L+GI + +GE + LLGPSGCGK+T P +GR Sbjct: 2 AGVRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVY 61 Query: 81 LDGEEITGQTSK---VSYMHQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKARAHLEVF 137 DG ++TG K V+ + Q L P V DN+A PL +K E R+ R E+ Sbjct: 62 FDGRDVTGLPPKDRNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAAELL 121 Query: 138 GLSGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVVD 197 + D YP QLSGG +QR A+ R + +V+L+DEP LDAI R +++ + + Sbjct: 122 EIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKLQR 181 Query: 198 RLSTSVLLVTHDVDEAILLADRILVLS 224 RL +++ VTHD EA+++ DRI+V++ Sbjct: 182 RLGVTMIYVTHDQVEAMVIGDRIVVMN 208 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 131 bits (329), Expect = 2e-32 Identities = 81/218 (37%), Positives = 119/218 (54%), Gaps = 9/218 (4%) Query: 21 AKLQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRAL 80 A+++ EG+ RFG + ++ + S+ +GEF LLGPSGCGK+T P GR L Sbjct: 2 AEIRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRIL 61 Query: 81 LDGEEITGQTSK---VSYMHQRDLLLPWKTVLDNVAVPLVLK----GYGWREARRKARAH 133 +DGE++T + K V+ + Q L P +V DN+A L L+ G + RR+ Sbjct: 62 IDGEDVTFKDPKDRNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIEV 121 Query: 134 LEVFGLSGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLL 193 ++ + D P QLSGG +QR AL R + R V L+DEP LDA+ R ++ L Sbjct: 122 AKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELK 181 Query: 194 GVVDRLSTSVLLVTHDVDEAILLADRILVLSPRPGRVV 231 + L + + VTHD EA+ +ADRI V++ GRVV Sbjct: 182 KLQKDLKITTVYVTHDQAEAMSMADRIAVMN--KGRVV 217 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 127 bits (318), Expect = 4e-31 Identities = 68/207 (32%), Positives = 112/207 (54%), Gaps = 3/207 (1%) Query: 21 AKLQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRAL 80 A ++ EG+ FG++ + ++ + + EF+ +LGPSG GK+T P GR Sbjct: 2 ASVKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIY 61 Query: 81 LDGEEITG---QTSKVSYMHQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKARAHLEVF 137 + ++T + + Q L P TV +N+A PL L+ +G + K + ++ Sbjct: 62 FNDVDVTDLPPNKRNIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVAKLL 121 Query: 138 GLSGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVVD 197 G+ G D YP+QLSGG +QR AL R + +V+LLDEP LDA+ R +++ L + Sbjct: 122 GIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQK 181 Query: 198 RLSTSVLLVTHDVDEAILLADRILVLS 224 L + + VTHD EA+ +ADRI +++ Sbjct: 182 ELGITAIYVTHDQSEALAMADRIAIIA 208 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 125 bits (315), Expect = 9e-31 Identities = 81/229 (35%), Positives = 120/229 (52%), Gaps = 12/229 (5%) Query: 22 KLQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALL 81 +++ + + +G++ L G+SFS E +LGPSGCGK+T P GR Sbjct: 5 EVRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFF 64 Query: 82 DGEEITG---QTSKVSYMHQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKARAHLEVFG 138 G + TG + V ++ Q L P TV DNVA L +G+ E RR+ LE G Sbjct: 65 GGVDYTGLPPERRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWALETVG 124 Query: 139 LSGFEDYYPSQ---LSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGV 195 L+ ++ + LSGG +QR AL R Y V+LLDEP LD R+RL L + Sbjct: 125 LTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRL 184 Query: 196 VDRLSTSVLLVTHDVDEAILLADRILVLSPRPGRVVAAHPVP---FSRP 241 +L ++++ VTHD EA+ LAD ++++ R GR+V H P ++RP Sbjct: 185 QRKLGSTMIYVTHDQWEAMELADTLVIM--RDGRIV-QHGTPSEVYTRP 230 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 125 bits (314), Expect = 1e-30 Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 3/226 (1%) Query: 21 AKLQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRAL 80 A ++ E ++ RFG+ L+ +S ++++GE LLGPSGCGK+T P GR Sbjct: 2 AGIRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVY 61 Query: 81 LDGEEIT---GQTSKVSYMHQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKARAHLEVF 137 + ++T + + Q L P V DN+A L L+ E R+ R E+ Sbjct: 62 IGSRDVTMLKPYERNTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWAAELL 121 Query: 138 GLSGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVVD 197 + D YP QLSGG +QR A+ R + +V+L+DEP LDA R +++E ++ + Sbjct: 122 EIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQK 181 Query: 198 RLSTSVLLVTHDVDEAILLADRILVLSPRPGRVVAAHPVPFSRPRT 243 RL +++ VTHD +EA+ ++ R+ V++ V + +P T Sbjct: 182 RLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVYEKPAT 227 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 117 bits (292), Expect = 4e-28 Identities = 73/207 (35%), Positives = 110/207 (53%), Gaps = 10/207 (4%) Query: 23 LQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLD 82 L+ G+ + + VL+G+ SL+ GE L ++GPSG GKST P SG + Sbjct: 5 LEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVFR 64 Query: 83 GEEITGQTS--------KVSYMHQRDLLLPWKTVLDNVAVPLVLK-GYGWREARRKARAH 133 G ++T + K+ Y+ Q L P TVL N+ PL G R+A +A + Sbjct: 65 GVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAEERAVKY 124 Query: 134 LEVFGLSGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLL 193 L + G+ +P++LSGG +QRAAL R D++LLDEP ALD +R + E L Sbjct: 125 LSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEALF 184 Query: 194 GVVDRLSTSVLLVTHDVDEAILLADRI 220 V L ++++VTH+ D A+ +ADR+ Sbjct: 185 RVA-TLGKAMIVVTHEADFAVKVADRM 210 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 106 bits (265), Expect = 5e-25 Identities = 66/198 (33%), Positives = 101/198 (51%), Gaps = 13/198 (6%) Query: 35 LAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLDGEEITG------ 88 + L +S S+A GE L ++GPSG GK+T P +GR ++DG E++ Sbjct: 27 IVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGEEL 86 Query: 89 ---QTSKVSYMHQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKARAHLEVFGLSGFEDY 145 + +V Y+ Q+ L+P T L+N+ +P+ L G + R + + L GL G E Sbjct: 87 RRFRLERVGYVFQQHNLIPTLTALENILLPMALAG---KANRLRGQELLRRVGLGGKERR 143 Query: 146 YPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVVDRLSTSVLL 205 YP +LSGG +QR A+ +++ DEP G LD T ER+ LL +V+L Sbjct: 144 YPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEAHSRGKTVVL 203 Query: 206 VTHDVDEAILLADRILVL 223 THD +ADR+ V+ Sbjct: 204 TTHD-PRVARMADRVAVI 220 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 104 bits (260), Expect = 2e-24 Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 14/200 (7%) Query: 38 LEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLDGEEITGQTSKVSYMH 97 ++G+ + EGE L ++G SGCGK+T P G GE +T Sbjct: 38 VDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARDRRL 97 Query: 98 QRDLLL----PWKT------VLDNVAVPLVLKGYG-WREARRKARAHLEVFGLSGFEDYY 146 +R L + P+K+ V D VA PLV+ G EARR+A LE GL+ ++Y Sbjct: 98 RRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETVGLTPGREFY 157 Query: 147 ---PSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVVDRLSTSV 203 P QLSGG RQR A+ RT + +V++ DEP +D R + + ++ R ++ Sbjct: 158 WRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTGATI 217 Query: 204 LLVTHDVDEAILLADRILVL 223 +L+THD+ A +ADRI V+ Sbjct: 218 VLITHDIAVARAVADRIAVM 237 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 98.6 bits (244), Expect = 1e-22 Identities = 71/220 (32%), Positives = 99/220 (45%), Gaps = 34/220 (15%) Query: 38 LEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRA-------LLDGEEITGQT 90 ++G+SFS+A GE CL+G SGCGK+T GR +L+ E G Sbjct: 50 VDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERRGVK 109 Query: 91 S-----------------------KVSYMHQRDLLLPWKTVLDNVAVPLVLKGYG-WREA 126 S ++ Y L P T+ + PL++ G RE Sbjct: 110 SLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNARER 169 Query: 127 RRKARAHLEVFGL---SGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAI 183 LE L S F D YP QLSGG RQR A+ R ++ +++ DEP LD Sbjct: 170 EEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSMLDVS 229 Query: 184 TRERLQEWLLGVVDRLSTSVLLVTHDVDEAILLADRILVL 223 R + E LLG ++L TS+L +THD+ A + DRI V+ Sbjct: 230 IRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVM 269 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 95.9 bits (237), Expect = 1e-21 Identities = 72/240 (30%), Positives = 116/240 (48%), Gaps = 10/240 (4%) Query: 21 AKLQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRAL 80 A + AE + +G ++G+SF +A GE LLGP+G GK+T P SG A Sbjct: 5 AMVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAW 64 Query: 81 LDGEEIT---GQTSKVSYMHQRDLLLPWK-TVLDNVAVPLVLKGYGWREARRKARAHLEV 136 + G I G +V + +DL + + DNV + L G EAR + R L+ Sbjct: 65 IAGYSIVREPGNVRRVIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEARERTREVLDY 124 Query: 137 FGLSGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVV 196 L + SGGMR++ + + ++ V+ LDEP LD +R L ++ + Sbjct: 125 LDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIED-L 183 Query: 197 DRLSTSVLLVTHDVDEAILLADRILVLSPRPGRVVAAHPVPFSRPRTREHLLTTEYLSLK 256 R + ++LL TH ++EA +L+DR+ ++ GR+VA + R + T Y+ LK Sbjct: 184 KRSAVTILLTTHYMEEAEMLSDRVAIID--RGRIVAEGTPEELKARVKGE---TVYIELK 238 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 94.0 bits (232), Expect = 4e-21 Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 18/209 (8%) Query: 33 GDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXP----VSGRALLDGEEITG 88 G + ++G+SF+L GE L + G SG GKST P V GR ++DG ++T Sbjct: 20 GIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTS 79 Query: 89 QTS----------KVSYMHQ--RDLLLPWKTVLDNVAVPLVL-KGYGWREARRKARAHLE 135 + KVS + Q ++L P TV + L + +G G EAR++ LE Sbjct: 80 MSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELLE 139 Query: 136 VFGLS-GFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLG 194 GL D YP +LSGG +QR + D+++ DEP ALD + + ++ L Sbjct: 140 SVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLKK 199 Query: 195 VVDRLSTSVLLVTHDVDEAILLADRILVL 223 + + S++L+THD+ LA+ ++++ Sbjct: 200 LAWEKNLSIILITHDLSVIAELAETVMIM 228 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 89.4 bits (220), Expect = 9e-20 Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 7/207 (3%) Query: 23 LQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLD 82 L + RFG + L+G+SFS+ GE + L+GP+G GK+T P GR + Sbjct: 5 LDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYK 64 Query: 83 GEEITG----QTSKVSYMHQRDLLLPWK--TVLDNVAVPLVLKGYGWREARRKARAHLEV 136 G +ITG + S+ ++ P TVL+NV V +L+ REAR +A +++ Sbjct: 65 GVDITGWPAYRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAMEAIDM 124 Query: 137 FGLSGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVV 196 GL+G ED L+ ++R L R + +++LLDE L + L LL + Sbjct: 125 VGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLEIS 184 Query: 197 DRLSTSVLLVTHDVDEAILLADRILVL 223 R ++++V H + + A+R++VL Sbjct: 185 KR-GITIIMVEHVMRAVMNFAERVIVL 210 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 86.7 bits (213), Expect = 6e-19 Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 18/209 (8%) Query: 33 GDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXP----VSGRAL-------- 80 G + ++G+S S+ +GE++ ++G SG GKST P V GR L Sbjct: 18 GIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRILYSGVDLLS 77 Query: 81 LDGEEIT---GQTSKVSYMHQRDLLLPWKTVLDNVAVPLVLKGYG--WREARRKARAHLE 135 L GEE+ G+ + + L P++TV +A L+ G EA A LE Sbjct: 78 LAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLASSGSEAESMAGDALE 137 Query: 136 VFGLSGFE-DYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLG 194 + G+ YP QLSGG RQR A+ +++ DEP ALD + + ++ + + Sbjct: 138 LVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKIMDLMKK 197 Query: 195 VVDRLSTSVLLVTHDVDEAILLADRILVL 223 + + +V+LVTHD+ A +DRI V+ Sbjct: 198 LQEERGLTVMLVTHDIGLAAEYSDRIAVM 226 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 86.3 bits (212), Expect = 8e-19 Identities = 63/215 (29%), Positives = 98/215 (45%), Gaps = 9/215 (4%) Query: 23 LQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLD 82 ++A G+ RFG + G+SFS+ +GE C++GP+G GK+T P G + Sbjct: 5 VEARGLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVC 64 Query: 83 GEEITGQ-----TSKVSYMHQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKARAHLEVF 137 G ++ G + + Q + T + + V L G ARR+AR LE+ Sbjct: 65 GYDVWGDGWREARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREARRVLEML 124 Query: 138 GLSGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVVD 197 G ++LSGG R+ + +V++LDEP LD RE L W Sbjct: 125 GFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESL--WASLRKA 182 Query: 198 RLSTSVLLVTHDVDEAILLADRILVLSPRPGRVVA 232 +VL +HD EA +DR+L++ GR+ A Sbjct: 183 FKGRTVLFSSHDPQEAEAESDRVLIM--HRGRLAA 215 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 84.7 bits (208), Expect = 2e-18 Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 8/206 (3%) Query: 35 LAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLDGEEITGQT---- 90 + L+G+ + G LLGP+G GK+T P SG A + G ++ + Sbjct: 26 IRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANNVR 85 Query: 91 SKVSYMHQRDLLLPWK-TVLDNVAVPLVLKGYGWREARRKARAHLEVFGLSGFEDYYPSQ 149 S++ + + L W+ + DN+ L G REA+R+ + LE+ GL + Sbjct: 86 SRIGVVLGGERALYWRLSGWDNLWFFSQLYGIPPREAKRRVKELLEIVGLEEWAHVRVEN 145 Query: 150 LSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVVDRLSTSVLLVTHD 209 S GM+QR + R + +V+LLDEP LD ++ + +V R +VLL TH Sbjct: 146 YSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIV-REGRTVLLTTHY 204 Query: 210 VDEAILLADRILVLSPRPGRVVAAHP 235 + EA L+DR+ ++S GR+VA P Sbjct: 205 MVEAEELSDRVAIIS--KGRIVAEGP 228 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 82.4 bits (202), Expect = 1e-17 Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 7/207 (3%) Query: 22 KLQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALL 81 ++ A +S RFG + F+ G L +LGP+G GK+T P +G L+ Sbjct: 4 EVNASALSKRFGQRYAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILV 62 Query: 82 DGEEITGQ-----TSKVSYMHQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKARAHLEV 136 +G ++ Y+ + ++ W T + L+GY EAR +AR LEV Sbjct: 63 EGVNPRSPGFEKLLPRIGYVPELPVVPLWTTPCILLETLARLEGYTSVEARVRAREALEV 122 Query: 137 FGLSGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVV 196 GL+G + +LS G R+R + + ++ ++++LDEP+ LD R++E LL V Sbjct: 123 VGLAGECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRE-LLRTV 181 Query: 197 DRLSTSVLLVTHDVDEAILLADRILVL 223 R +V++ +H + E +A +LVL Sbjct: 182 AREGATVIVSSHILRELEDIATHVLVL 208 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 82.0 bits (201), Expect = 1e-17 Identities = 60/234 (25%), Positives = 106/234 (45%), Gaps = 23/234 (9%) Query: 23 LQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLD 82 L E I++RFG + L+ +S + GE L ++GP+G GK++ P GR Sbjct: 2 LWTENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFK 61 Query: 83 GEEITGQ------TSKVSYMHQRDLLLPWKTVLDNVAVPL-------VLKGYGWR----- 124 G +ITG T +S Q L TVL+N+ V L +L+ W Sbjct: 62 GRDITGLKPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKR 121 Query: 125 ---EARRKARAHLEVFGLSGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALD 181 EAR +A +++ L L G++++ L +V+L+DEP L Sbjct: 122 WEVEARERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLS 181 Query: 182 AITRERLQEWLLGVVDRLSTSVLLVTHDVDEAILLADRILVLSPRPGRVVAAHP 235 +E + ++ + + T+++L+ HD++ + DR++V+ G+V+ P Sbjct: 182 KEEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMD--YGKVIFEGP 233 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 81.6 bits (200), Expect = 2e-17 Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 27/251 (10%) Query: 23 LQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLD 82 ++ G+++ D +L+GISF G ++GPSG GKST + G A ++ Sbjct: 6 VRVSGLNVWITDKHILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPG-ARVE 64 Query: 83 GEEITGQTSKVS-----------YMHQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKA- 130 GE + + + Q P T+ +NVA+ L G + Sbjct: 65 GEVWINNMNVMKEDPYNIRRYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEI 124 Query: 131 ------RAHLEVFGLSGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAIT 184 AHL DY P QLSGG RQR +L R + V+LLDEP +D ++ Sbjct: 125 VEWALKMAHLWDEVKDRLSDY-PHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVS 183 Query: 185 RERLQEWLLGVVDRLSTSVLLVTHDVDEAILLADRILVLSPRPGRVVAAHPVP--FSRPR 242 ++++ ++ +V++VTH +A ++D+IL L GRV+ P RPR Sbjct: 184 TVKIEQSIVEYAKEEMATVIIVTHTPQQAARISDQILFL--YEGRVIEYGPTKELVLRPR 241 Query: 243 TREHLLTTEYL 253 H LT ++L Sbjct: 242 ---HELTKKFL 249 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 81.3 bits (199), Expect = 2e-17 Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 9/201 (4%) Query: 38 LEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLDGEEITGQ------TS 91 L+ + F+L GE LLG +G GK+T P G + G +++ + + Sbjct: 29 LDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYVWGRKVSWRGPWDAIRN 88 Query: 92 KVSYMHQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKARAHLEVFGLSGFEDYYPSQLS 151 ++ ++Q+ L+ TV +N+A+ L G G EARR+ E GL + L Sbjct: 89 GIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRTLETAERLGLEIDLAKTVADLP 148 Query: 152 GGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVVDRLSTSVLLVTHDVD 211 G RQR +++ + V++LDEP L + E+L L + D + SV+ +TH + Sbjct: 149 MGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLRLLKD-MGVSVVYITHKLG 207 Query: 212 EAILLADRILVLSPRPGRVVA 232 E + +ADR+ VL R GRV A Sbjct: 208 EVVRVADRVTVL--RRGRVSA 226 Score = 48.9 bits (115), Expect = 1e-07 Identities = 61/230 (26%), Positives = 101/230 (43%), Gaps = 26/230 (11%) Query: 16 PVPRP-AKLQAEGISMRFGDLAVLEGI------SFSLAEGEFLCLLGPSGCGKSTXXXXX 68 P PRP K+ E +S+R G V++G+ S + EGE + + G +G G+ Sbjct: 250 PTPRPPGKVGRELLSVR-GVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAI 308 Query: 69 XXXXXPVSGRALLDGEEITGQTSKV----SYM--HQRDLLLPWKTVLDNVAV-------P 115 PV G + G I G Y+ + +L +V +N+A Sbjct: 309 IGLRRPVRGSIEVQGRRIEGSLDFYRAGGGYIAGDRGKVLAMDYSVAENIAFLYYTASKT 368 Query: 116 LVLKGYGWREARRKARAHLEVFGLSGFEDYYP-SQLSGGMRQRAALLRTYLYRSDVMLLD 174 L+L+ + R+ +E F L + P +LSGG +Q+ + L +++ Sbjct: 369 LLLRRSRLEDLFRRL---VERFRLVARSPWTPVGRLSGGNQQKVIVGSEVLRGFKLLVAV 425 Query: 175 EPFGALDAITRERLQEWLLGVVDRLSTSVLLVTHDVDEAILLADRILVLS 224 P LD T ++ LL + R +LLV+ D+DE + L+DRI V+S Sbjct: 426 NPTQGLDIATTSFVRN-LLSELARQGAGILLVSTDLDEILELSDRIYVMS 474 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 77.8 bits (190), Expect = 3e-16 Identities = 66/215 (30%), Positives = 98/215 (45%), Gaps = 11/215 (5%) Query: 33 GDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLDGEEITGQ--- 89 G + L+G++ S G LLG +G GK+T P GR L+DG E+ + Sbjct: 16 GGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPKGPG 75 Query: 90 ---TSKVSYMHQRDLLLPWKTVLDNVAVPLVLKG--YGWREARRKARAHLEVFGLSGFED 144 S + Q + P +++AV L++ G G R+AR E GL+ D Sbjct: 76 DSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAEASEALGLNIDPD 135 Query: 145 YYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVVDRLSTSVL 204 Y ++ RQR +++ S +LLDEP L R+ E G + +VL Sbjct: 136 RYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLE-AAGRLAASGAAVL 194 Query: 205 LVTHDVDEAILLADRILVLSPRPGRVVAAHPVPFS 239 LVTH + EA+ ADR+++L R G V P P S Sbjct: 195 LVTHRIGEAMEHADRLVIL--RKGVKVYEGPPPSS 227 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 75.5 bits (184), Expect = 1e-15 Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 11/197 (5%) Query: 38 LEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLDGEEITG--------- 88 ++ ++ + G+ L L+G SG GK+T P GR DG ++ Sbjct: 52 VDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGLKEF 111 Query: 89 -QTSKVSYMHQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKARAHLEVFGLSGFEDY-Y 146 + +++ + L P KT+ + +A P+ + G + + + L GL+ Y Y Sbjct: 112 RRRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQVGLNETHLYRY 171 Query: 147 PSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVVDRLSTSVLLV 206 P + SGG RQR A+ R + + ++LDEP ALD + ++ L + + S + L + Sbjct: 172 PHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTYLFI 231 Query: 207 THDVDEAILLADRILVL 223 +HD+ ++D I V+ Sbjct: 232 SHDLGVVRYMSDYIAVM 248 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 73.2 bits (178), Expect = 7e-15 Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 21/220 (9%) Query: 21 AKLQAEGISMRFGD-------LAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXX 73 A ++A G+ RF + L+G+SFS+ EGE LGP+G GK+T Sbjct: 4 AMIEARGLVKRFVSGRIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLD 63 Query: 74 PVSGRALLDGEEITGQ----TSKVSYMHQRDLLLPWK-TVLDNVAVPLVLKGYGWREARR 128 P G A + G ++ + ++ M + WK T +N+ + G E + Sbjct: 64 PDGGEARVAGFDVVKERWEVRKRIGVMLSVERGFYWKLTGRENLYYFGRIYGIPQGELKS 123 Query: 129 KARAHLEVFGLS--GFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRE 186 + + L++ GL+ G D ++S GM+ R L R L +V++LDEP LD + Sbjct: 124 RIKEVLDLVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASAR 183 Query: 187 RLQEWLLGVVDRLST---SVLLVTHDVDEAILLADRILVL 223 ++ GV+ L++ ++ + TH++ EA +++DR+ ++ Sbjct: 184 TIR----GVIRSLASEGRTIFITTHNMVEAEMISDRVGII 219 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 72.4 bits (176), Expect = 1e-14 Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 24/232 (10%) Query: 23 LQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLD 82 L+ E + RFG + L+ ++ + G+ L+GP+G GK+T P GR L Sbjct: 7 LRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLFK 66 Query: 83 GEEITG----QTSKVSYMHQRDLLLPWK--TVLDNVAVP-------LVLKGYGWR----- 124 G +ITG + SK+ + + P+ TVL+NV + L G R Sbjct: 67 GRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWLGF 126 Query: 125 EARRKARAHLEVFGLSGFE---DYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALD 181 E R ARA E+ G G + D +LSGG + + R + ++++++DEP ++ Sbjct: 127 EKRAAARA-FEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVN 185 Query: 182 AITRERLQEWLLGVVDRLSTSVLLVTHDVDEAILLADRILVLSPRPGRVVAA 233 + E + + + L++ H + DR+ +S G+V+A+ Sbjct: 186 PRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMS--MGKVIAS 235 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 70.9 bits (172), Expect = 3e-14 Identities = 65/234 (27%), Positives = 101/234 (43%), Gaps = 43/234 (18%) Query: 23 LQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLD 82 ++ EG+ R+G + L G+SFS+ GE LGP+G GK+T P SG A + Sbjct: 5 IEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARVF 64 Query: 83 GEEI-----TGQTSKVSYMHQRDLLLPWKTVLDNVAVPLVLKGYG----------WRE-- 125 G E+ +G +V Y VP + YG W Sbjct: 65 GVELYNPGASGVRRRVGY------------------VPGEFEFYGGVSGGRMLDYWCRLV 106 Query: 126 ---ARRKARAHLEVFGLSGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDA 182 +R R LE F L + S GM+Q AL+ + + D++++DEP LD Sbjct: 107 GGCSRGVVRELLEAFPLP--LERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDP 164 Query: 183 ITRERLQEWLLGVVDRLSTSVLLVTHDVDEAILLADRILVLSPRPGRVVAAHPV 236 + R R+ +++ R +V +H + E +ADR+ +L R G +VA V Sbjct: 165 LARGRVLDFVRSKA-REGVTVFFSSHVLSEVQRVADRVGLL--RSGVLVALEDV 215 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 69.3 bits (168), Expect = 1e-13 Identities = 63/259 (24%), Positives = 107/259 (41%), Gaps = 52/259 (20%) Query: 33 GDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLD---------- 82 G + ++G+S SL +GE L ++G SG GK+T P +G +D Sbjct: 25 GYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELEEAV 84 Query: 83 --------GEEITGQ----------TSKVSYMHQRDL-----------------LLPWKT 107 GE + + T YM + + L P Sbjct: 85 SIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMK 144 Query: 108 VLDNVAVPLVLKGY--GWREARRKARAHLEVFGLSG-FEDYYPSQLSGGMRQRAALLRTY 164 V + + P+ + G +R+ LE GL F D YP +LSGG RQR A+ R Sbjct: 145 VGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIARAL 204 Query: 165 LYRSDVMLLDEPFGALDAITRERLQEWLLGVVDRLSTSVLLVTHDVDEAILLADRILVLS 224 +++LDEP ALD + ++ L + + + LL+THD+ ++ ++V+ Sbjct: 205 ALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVM- 263 Query: 225 PRPGRVVAAHP--VPFSRP 241 G+++ + P + F+ P Sbjct: 264 -YSGKIMESAPKHILFTNP 281 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 68.6 bits (166), Expect = 2e-13 Identities = 53/216 (24%), Positives = 100/216 (46%), Gaps = 26/216 (12%) Query: 31 RFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLDGEEI---- 86 R G + L+G+ + +GE L ++G SGCGKST + A+++ I Sbjct: 18 RQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARI---LPSNAVIEKGSIILNL 74 Query: 87 -TGQTSKVSYMHQRDLLLPWKTVLDNV------------AVPLVLKGYGWREARRKARAH 133 +G T + + + +L+ ++ + V + + E RR + Sbjct: 75 GSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDHVSGEKRRVEKIA 134 Query: 134 LEVFGLSGFE------DYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRER 187 E+ + YP +LSGGM+QR + + + R +++ DEP ALD + + Sbjct: 135 QEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQ 194 Query: 188 LQEWLLGVVDRLSTSVLLVTHDVDEAILLADRILVL 223 + + L + + L T+++L+TH++ A +ADRI V+ Sbjct: 195 ILKMLSRLREELETTIILITHNLAVAAEIADRIAVM 230 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 67.8 bits (164), Expect = 3e-13 Identities = 66/250 (26%), Positives = 106/250 (42%), Gaps = 33/250 (13%) Query: 23 LQAEGISMRF----GDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXP---- 74 ++ E + + F G + +E +SF + GE CL+G +GCGKS P Sbjct: 10 IEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGRI 69 Query: 75 VSGRAL-------------LDGEE---ITGQTSKVSYMHQRDLLLPWKTVLDNVAVPLVL 118 V G+ LD +E I G+ + L P T+ V ++ Sbjct: 70 VEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETMLA 129 Query: 119 KGY--GWREARRKARAHLEVFGLSGFEDY---YPSQLSGGMRQRAALLRTYLYRSDVMLL 173 G RE R+A L+ + E YP +LSGGM+QR + + R +++ Sbjct: 130 HGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLIA 189 Query: 174 DEPFGALDAITRERLQEWLLGVVDRLSTSVLLVTHDVDEAILLADRILVLSPRPGRVVAA 233 DEP ALD + ++ + L + ++LL+TH++ DR+ V+ G +V Sbjct: 190 DEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVM--YAGNIVEE 247 Query: 234 HPVP--FSRP 241 PV FS P Sbjct: 248 APVDELFSNP 257 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 67.4 bits (163), Expect = 4e-13 Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 40/231 (17%) Query: 23 LQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLD 82 L+ + I + +G+ L G+S + +GE + LLG +G GK+T P +G + Sbjct: 7 LEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIWQ 66 Query: 83 GEEITGQTS------KVSYMHQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKARAHLE- 135 G +ITG + +S++ + + P TV +N+ V + R+A+ H + Sbjct: 67 GRDITGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRV---------AASTRRAKEHFQD 117 Query: 136 -------VFG-LSGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEP-FGALDAITRE 186 +F L LSGG +Q A+ R + R ++++DEP G + R+ Sbjct: 118 SLEQVYTIFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARD 177 Query: 187 ------RLQEWLLGVVDRLSTSVLLVTHDVDEAILLADRILVLSPRPGRVV 231 RL+E L ++LLV +V ++ +ADR V+ GR+V Sbjct: 178 VIYLASRLRE-------ELGVTILLVEQNVGLSLKVADRGYVM--ETGRIV 219 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 65.9 bits (159), Expect = 1e-12 Identities = 66/244 (27%), Positives = 103/244 (42%), Gaps = 9/244 (3%) Query: 23 LQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLD 82 L+A G+ ++ VL+ + + GE + L+GP+G GK+T GR LL+ Sbjct: 5 LEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLLN 64 Query: 83 GEEITGQTSK---VSYMHQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKARAHLEVFGL 139 G + + V + +R L V++ + + G RA GL Sbjct: 65 GLDPWREPRAREGVGVVFERPNLPSSMPVVEFLESAAAIIGSSPSRVDWAIRAA----GL 120 Query: 140 SGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVVDRL 199 G E QLS G++QRAA+ L ++ DEP LD + R + L + Sbjct: 121 EGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLNREH 180 Query: 200 STSVLLVTHDVDEAILLADRILVLSPRPGRVVAAHPVPFSRPRTREHLLTTEYLSLKANI 259 S+L+ +H + E + +A RI VL+ GR+ A R L T SL A + Sbjct: 181 GLSLLVSSHVIVELLRVATRIYVLA--GGRLAAEGSPEDLFRRAGLARLRTSNPSLAAEL 238 Query: 260 LEEL 263 L L Sbjct: 239 LRSL 242 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 64.3 bits (155), Expect = 3e-12 Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 19/223 (8%) Query: 22 KLQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALL 81 +++ E +++ + VL G++ + ++GP+G GK+T P GR L Sbjct: 2 RVRVEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFL 61 Query: 82 DGEEITGQTSKV----SYMHQRDLL--LPWKTVLDNVAVPLVLKGYGWREARRKARAHLE 135 DG E TG+ V Y+ Q L TV + V L L+G AR +A L Sbjct: 62 DGFEATGRPEMVGRYAGYVPQNPSAPKLSPMTVREFVETSLRLRGV--TRARERAVEVLH 119 Query: 136 VFGLSG-FEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLG 194 G+ G + +LS GM QR + R ++++DEP ++D R + + G Sbjct: 120 TLGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAG 179 Query: 195 VV-DRLSTSVLLVTHDVD------EAILLADRILVLSPRPGRV 230 + +RL VL+ +HD + I++ +R L+ S P V Sbjct: 180 LARERL---VLMTSHDPSLLLGHTDIIVVINRDLIASGPPEEV 219 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 62.8 bits (151), Expect = 9e-12 Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 12/216 (5%) Query: 27 GISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLDGEEI 86 G++ VL G+S S+ GE L G +G GK+T SG A + G + Sbjct: 19 GVAKSVKGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDP 78 Query: 87 TGQ-----TSKVSYMHQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKARAHLEVFGLSG 141 G +V Y+ + + T ++N+ L GWR+ + GLS Sbjct: 79 WGGGFERVKGEVGYLPEDASVYERLTGMENILFYARLYS-GWRDVEELVENAVFYSGLSR 137 Query: 142 FEDYY--PSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVVDRL 199 ED S GM++R L T + + +++LDEP +D I R+++ L G + R Sbjct: 138 -EDLARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRG-LSRE 195 Query: 200 STSVLLVTHDVDEAILLADRILVLSPRPGRVVAAHP 235 ++L+ THD+ A +ADR+ ++ G VA+ P Sbjct: 196 GRAILVTTHDLALAEEIADRVTII--HGGSTVASGP 229 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 62.8 bits (151), Expect = 9e-12 Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 8/237 (3%) Query: 23 LQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLD 82 ++AEG+ R G VL+ +S ++ G ++GP+G GK+T GR L Sbjct: 9 VEAEGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALL 68 Query: 83 GEEIT----GQTSKVSYMHQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKARAHLEVFG 138 GE + +V+Y+ + P++ + + + L YG + + G Sbjct: 69 GEPVERAGGSLFRRVAYLPEDG--EPYRNMTGHEFLRLYASIYGVEDLEGYLEEASRLSG 126 Query: 139 LSGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVVDR 198 L G S GMR+R + + + +LDEP LD + ++ L +R Sbjct: 127 LGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSER 186 Query: 199 LSTSVLLVTHDVDEAILLADRILVLSPRPGRVVAAHPVPFSRPRTREHLLTTEYLSL 255 +VLL +H++ E + I ++S GR+V + + RT L Y++L Sbjct: 187 HGVTVLLSSHNMYEVESVCSEITMIS--SGRIVYSGSPGEAVRRTGASSLEEAYVAL 241 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 61.2 bits (147), Expect = 3e-11 Identities = 64/231 (27%), Positives = 90/231 (38%), Gaps = 18/231 (7%) Query: 19 RPAKLQAEGISMRFGDLA-VLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSG 77 RP ++ EG+ R+ VL G+SFSL G + LLGP+G GK+T P G Sbjct: 2 RPCSVRLEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRG 61 Query: 78 RALLDGEEITGQTSKVSYMHQRDLLLPWKTVLDNVAVPL-----VLKGYGW-REARRKAR 131 R + G + Y + P L V V L V +G W R + Sbjct: 62 RVEVCGSPPGRVRRMLGYAPASPEVDP---RLKAVEVALLYRYGVSEGVAWGRRDWEEVL 118 Query: 132 AHLEVFGLSGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEW 191 A L G+ +LS G R+ L R + LLDEP LD R+ Sbjct: 119 AALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLV 178 Query: 192 LLGVVDRLSTSVLLVTHD------VDEAILLADRILVLSPRPGRVVAAHPV 236 L + R +++ THD D I+L + +L P VV + Sbjct: 179 LRSLRGR--ATIVYTTHDPLAAMAADSVIMLREGLLHAQGPPEAVVTPETI 227 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 58.5 bits (140), Expect = 2e-10 Identities = 59/228 (25%), Positives = 92/228 (40%), Gaps = 15/228 (6%) Query: 5 EIEPSREGVSSPVPRPAKLQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTX 64 E +P+ G R + G+ + + G +L GE + + GP+G GK+T Sbjct: 341 EAQPAAPGGGRQASRRRIVGWTGLRVALDGFTLTSGEG-ALYGGEVIGVAGPNGIGKTTF 399 Query: 65 XXXXXXXXXPVSGRALLDGEEITGQTSKVSYMHQ--RDLLLPWKTVLD--NVAVPLVLKG 120 PV G E++ +VSY Q LP TV A P +L Sbjct: 400 VRTLAGALKPVEGAVYPYVEDL-----RVSYKPQYISPESLPDATVEQVLKAANPAILAP 454 Query: 121 YGWREARRKARAHLEVFGLSGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGAL 180 W R L+ + LSGG Q+ A+ +DV LLDEP L Sbjct: 455 GSWLNLELVKRMRLDKL-----LERRVRTLSGGELQKVAVAAALAREADVYLLDEPSAYL 509 Query: 181 DAITRERLQEWLLGVVDRLSTSVLLVTHDVDEAILLADRILVLSPRPG 228 D R + + +V+ + L+V HD+ ++DRI++++ PG Sbjct: 510 DVEERVGVARAIRRIVETREAAALVVEHDLMILDYVSDRIMLVTGEPG 557 Score = 42.7 bits (99), Expect = 1e-05 Identities = 53/197 (26%), Positives = 78/197 (39%), Gaps = 18/197 (9%) Query: 47 EGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLDGEE---------ITGQTSKVSYMH 97 EG+ + LLG +G GK+T P GR ++G E G + + Sbjct: 105 EGQVVGLLGRNGTGKTTALRILAGELKPNLGR--VEGGEPEWDEILKRFRGSELQTYFRK 162 Query: 98 QRDLLLPWKTVLDNVA-VPLVLKG-----YGWREARRKARAHLEVFGLSGFEDYYPSQLS 151 D L + V VP LKG + R A E GL D QLS Sbjct: 163 LVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGVALELAEQVGLDKVFDRDVRQLS 222 Query: 152 GGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVVDRLSTSVLLVTHDVD 211 GG Q+ ++ ++V + DEP LD R R+ + G R V++V HD+ Sbjct: 223 GGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAA-RPGAYVMVVEHDLA 281 Query: 212 EAILLADRILVLSPRPG 228 ++D + +L PG Sbjct: 282 VLDYVSDLVHILYGEPG 298 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 58.5 bits (140), Expect = 2e-10 Identities = 59/204 (28%), Positives = 87/204 (42%), Gaps = 5/204 (2%) Query: 21 AKLQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRAL 80 A L+ E + G VL G+S +L GE + + G +G GK+T P GR Sbjct: 3 ALLRLENVWKMLGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRVS 62 Query: 81 LDGEEITGQTSKVSYMHQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKARAHLEVFGLS 140 G V Y+ ++ TV +NV L G + A A + GL Sbjct: 63 WGCPR--GPRGCVGYVGHTPMVYGDLTVWENVEFFSSLHGGSLGDYPLAAEAW-RLLGLE 119 Query: 141 GFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVVDRLS 200 + + SQLS G R+R ++R L ++LLDE F LD E L LL + Sbjct: 120 KYGSHLASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSR-LLRLALGEG 178 Query: 201 TSVLLVTHDVDEAIL-LADRILVL 223 ++L+ T ++ L LA R+ L Sbjct: 179 LALLMTTPLLEPRYLGLASRVYTL 202 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 55.5 bits (132), Expect = 1e-09 Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 18/203 (8%) Query: 23 LQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKST--XXXXXXXXXXPVSGRAL 80 L+ +G++ + G+ VL + F L GE ++GP+G GKS+ V G L Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 81 LDGEEI-----TGQTSKVSYMHQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKA----- 130 LDGE I + K +M Q+D L ++ + V K G ++ + A Sbjct: 63 LDGESIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKIV 122 Query: 131 RAHLEVFGLSGFEDYYPSQ-----LSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITR 185 + E G + ++ SGG ++R+ LL+ ++ +++LDEP LD Sbjct: 123 KRMYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGL 182 Query: 186 ERLQEWLLGVVDRLSTSVLLVTH 208 + + E++ + D V+L+TH Sbjct: 183 KIVAEFIKQLRDS-GRGVMLITH 204 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 55.1 bits (131), Expect = 2e-09 Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 17/215 (7%) Query: 23 LQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLD 82 ++ E +S +G L L +S + G ++GP+G GKST GR L + Sbjct: 6 IKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLFE 65 Query: 83 GEEITGQTSK------VSYMHQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKARAHLEV 136 ++T ++++ Q + + TV +N L L GY E + R EV Sbjct: 66 NTDVTHMPPHDRAKIGMTFIFQLENIFRELTVYEN----LRLAGYDLPEDVFRDRLE-EV 120 Query: 137 FG----LSGFEDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWL 192 F L LSGG RQ A+ + + V L+DEP L + + + Sbjct: 121 FSMFPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSY- 179 Query: 193 LGVVDRLSTSVLLVTHDVDEAILLADR-ILVLSPR 226 + ++++ +V+LV +V ++ + D+ +LV++ R Sbjct: 180 VRILNKEGYTVVLVEQNVKASLEIGDKGVLVVNGR 214 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 52.8 bits (125), Expect = 9e-09 Identities = 47/152 (30%), Positives = 64/152 (42%), Gaps = 3/152 (1%) Query: 37 VLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLDGEEITGQTSKVSYM 96 VL G+S G L L GP+G GKST + G L E G+ V Sbjct: 19 VLRGVSLEAPRGITL-LAGPTGGGKSTILRVAAGLATRIYGGYLRGEVEARGKPVLVPQD 77 Query: 97 HQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKARAHLEVFGLSGFEDYYPSQLSGGMRQ 156 + DL + T + + G EARR+A E G+ D S+LS G RQ Sbjct: 78 Y--DLFILSLTPREELEYCYEASGLPPWEARREAVRLAEELGIEDLLDRRVSKLSAGERQ 135 Query: 157 RAALLRTYLYRSDVMLLDEPFGALDAITRERL 188 R A+ ++V+L+DEP D + E L Sbjct: 136 RVAIASALALGAEVLLMDEPLAYQDPLGVESL 167 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 52.4 bits (124), Expect = 1e-08 Identities = 53/209 (25%), Positives = 89/209 (42%), Gaps = 18/209 (8%) Query: 35 LAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRAL-----LDGEEITGQ 89 + V++ +S S+ +G CL+GP+G GK+T GR L+GE+IT + Sbjct: 18 ILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNR 77 Query: 90 TSK------VSYMHQRDLLLPWKTVLDNVAVPLVLKGYGWREARRKARAHLEVF-GLSGF 142 V Y+ + + T +N LV Y +R R+ L F L Sbjct: 78 EPDEIARRGVIYVMEGRRIFKELTTEEN----LVSVAYAAGASRDDIRSVLSYFPRLKER 133 Query: 143 EDYYPSQLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVVDRLSTS 202 LSGG +Q A+ LYR +++LDEP L ++ + + + Sbjct: 134 LGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHREEGLT 193 Query: 203 VLLVTHDVDEAILLADRILVLSPRPGRVV 231 +LL + +A+ ++D V+ GR+V Sbjct: 194 ILLAEQNARKALEISDYGYVI--ENGRIV 220 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 45.8 bits (107), Expect = 1e-06 Identities = 51/193 (26%), Positives = 79/193 (40%), Gaps = 22/193 (11%) Query: 38 LEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLDGEEITGQTSKVSYMH 97 L ++ S+ G +LG +G GK+T P R ++G G + Y+ Sbjct: 7 LRDVTLSIPRG-VTAILGANGSGKTTLLKLAARLLKP--DRGSVEGPRRVGAALQNPYL- 62 Query: 98 QRDLLLPWKTVLDNVAVPLVLKGYGWREARRKARAHLEVFGLSGFEDYYPSQLSGGMRQR 157 L P VA L G EA + R GL + P LS G + Sbjct: 63 --GFLGP------TVAEDLARTAGGRGEALKLLREA----GLEYASERSPYTLSMGEARI 110 Query: 158 AALLRTYLYRSDVMLLDEPFGALDAITRERLQEWLLGVVDRLSTSVLLVTHDVDEAILLA 217 ++L + + +++DEP LD + WL ++ RL VL+ HD+D A +A Sbjct: 111 LSVLMAISWGPEAVVIDEPTSGLDGSGKR----WLASLIARLGVPVLVAGHDIDFAAAVA 166 Query: 218 DRILVLSPRPGRV 230 ++L R GRV Sbjct: 167 GWAVIL--RDGRV 177 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 41.2 bits (95), Expect = 3e-05 Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 37/230 (16%) Query: 23 LQAEGISMRFGDLAVLEGISFSLAEGEFLCLLGPSGCGKSTXXXXXXXXXXPVSGRALLD 82 L+A G R + VL+ ++ ++ G ++G SG GK+T + G + Sbjct: 441 LRAFGAERRVVERYVLKDVNITVNPGSVAAVVGASGAGKTTLLRMILGKALGIGG----E 496 Query: 83 GEEITGQTSKVSYMHQRDLLLPWK--------TVLDNVAVPLVLKGYGWREARRKARAHL 134 G K+ + LLP + T+L++VA L G A + Sbjct: 497 GYRPDSGVVKIPTNTKAAALLPGELEPSFGGETLLEHVASKLGDPG-----------AAV 545 Query: 135 EVFGLSGFED--YYPS---QLSGGMRQRAALLRTYLYRSDVMLLDEPFGALDAITRERLQ 189 EV G D ++ + +LS G ++RA L R +++++DE LD +T R+ Sbjct: 546 EVLSSVGLGDAIFFRASFGELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLTARRIA 605 Query: 190 EWLLGVVDRLSTSVLLVTHDVDEAI--LLADRILVL------SPRPGRVV 231 LG + R L+V+ + E + L D ++++ PGRV+ Sbjct: 606 R-KLGKLARSKGITLIVSTNRPEILDALQPDTVILVGYGSAFQEEPGRVL 654 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 282,704 Number of Sequences: 1700 Number of extensions: 12861 Number of successful extensions: 145 Number of sequences better than 1.0e-04: 41 Number of HSP's better than 0.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 50 length of query: 268 length of database: 492,079 effective HSP length: 75 effective length of query: 193 effective length of database: 364,579 effective search space: 70363747 effective search space used: 70363747 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719592|ref|YP_003875124.1| hypothetical protein STHERM_c19160 [Spirochaeta thermophila DSM 6192] (327 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 355,020 Number of Sequences: 1700 Number of extensions: 16907 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 0 length of query: 327 length of database: 492,079 effective HSP length: 77 effective length of query: 250 effective length of database: 361,179 effective search space: 90294750 effective search space used: 90294750 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719593|ref|YP_003875125.1| transporter [Spirochaeta thermophila DSM 6192] (271 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.136 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 196,079 Number of Sequences: 1700 Number of extensions: 6167 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 271 length of database: 492,079 effective HSP length: 75 effective length of query: 196 effective length of database: 364,579 effective search space: 71457484 effective search space used: 71457484 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719594|ref|YP_003875126.1| hypothetical protein STHERM_c19170 [Spirochaeta thermophila DSM 6192] (123 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.145 0.486 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,162 Number of Sequences: 1700 Number of extensions: 3013 Number of successful extensions: 2 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 123 length of database: 492,079 effective HSP length: 67 effective length of query: 56 effective length of database: 378,179 effective search space: 21178024 effective search space used: 21178024 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719595|ref|YP_003875127.1| hypothetical protein STHERM_c19190 [Spirochaeta thermophila DSM 6192] (1046 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,057,481 Number of Sequences: 1700 Number of extensions: 47267 Number of successful extensions: 130 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 130 Number of HSP's gapped (non-prelim): 0 length of query: 1046 length of database: 492,079 effective HSP length: 86 effective length of query: 960 effective length of database: 345,879 effective search space: 332043840 effective search space used: 332043840 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719596|ref|YP_003875128.1| aspartate-semialdehyde dehydrogenase [Spirochaeta thermophila DSM 6192] (374 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 382,057 Number of Sequences: 1700 Number of extensions: 16843 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 0 length of query: 374 length of database: 492,079 effective HSP length: 78 effective length of query: 296 effective length of database: 359,479 effective search space: 106405784 effective search space used: 106405784 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719597|ref|YP_003875129.1| hypothetical protein STHERM_c19210 [Spirochaeta thermophila DSM 6192] (564 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 634,472 Number of Sequences: 1700 Number of extensions: 29819 Number of successful extensions: 76 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76 Number of HSP's gapped (non-prelim): 0 length of query: 564 length of database: 492,079 effective HSP length: 82 effective length of query: 482 effective length of database: 352,679 effective search space: 169991278 effective search space used: 169991278 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719598|ref|YP_003875130.1| hypothetical protein STHERM_c19220 [Spirochaeta thermophila DSM 6192] (225 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 223,941 Number of Sequences: 1700 Number of extensions: 9645 Number of successful extensions: 27 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 0 length of query: 225 length of database: 492,079 effective HSP length: 74 effective length of query: 151 effective length of database: 366,279 effective search space: 55308129 effective search space used: 55308129 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719599|ref|YP_003875131.1| hypothetical protein STHERM_c19230 [Spirochaeta thermophila DSM 6192] (232 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.141 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 228,779 Number of Sequences: 1700 Number of extensions: 9241 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 232 length of database: 492,079 effective HSP length: 74 effective length of query: 158 effective length of database: 366,279 effective search space: 57872082 effective search space used: 57872082 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719600|ref|YP_003875132.1| lipoprotein [Spirochaeta thermophila DSM 6192] (470 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 473,349 Number of Sequences: 1700 Number of extensions: 21337 Number of successful extensions: 70 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 0 length of query: 470 length of database: 492,079 effective HSP length: 80 effective length of query: 390 effective length of database: 356,079 effective search space: 138870810 effective search space used: 138870810 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719601|ref|YP_003875133.1| transporter [Spirochaeta thermophila DSM 6192] (646 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 82 5e-17 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 77 2e-15 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 70 1e-13 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 64 9e-12 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 64 1e-11 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 63 3e-11 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 62 6e-11 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 62 6e-11 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 61 7e-11 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 59 3e-10 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 59 4e-10 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 59 5e-10 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 57 1e-09 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 57 1e-09 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 57 1e-09 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 56 2e-09 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 55 5e-09 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 54 1e-08 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 54 2e-08 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 53 2e-08 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 53 2e-08 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 52 3e-08 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 50 2e-07 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 50 2e-07 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 50 2e-07 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 49 3e-07 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 49 4e-07 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 48 8e-07 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 48 8e-07 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 47 1e-06 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 47 2e-06 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 46 2e-06 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 46 3e-06 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 45 4e-06 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 45 4e-06 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 45 7e-06 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 44 9e-06 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 43 3e-05 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 42 6e-05 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 81.6 bits (200), Expect = 5e-17 Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 19/223 (8%) Query: 326 VQTEGLGKAYGXXXXXXXXXXXXXXXXXXXIAGPNGAGKTTLLRILAGEDLAYTGTLR-- 383 V+ GL K +G I GPNG+GKTTLLR+++G G++R Sbjct: 5 VEARGLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVC 64 Query: 384 ----YGTG-----VVPGYFAQD--VAERLSGPQ--TVLEEALRVAAG-KEQEARDVLGAF 429 +G G + G+ QD +A R++G + TV+ L ++ G +EAR VL Sbjct: 65 GYDVWGDGWREARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREARRVLEML 124 Query: 430 LFRGEEVDKPLAVLSGGERSRLALARLFFSGANLLILDEPTNHLDLHTKDALCDAL-SSF 488 F + + + +A LSGG+R L +A S +++LDEP + LD+ +++L +L +F Sbjct: 125 GFE-DVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASLRKAF 183 Query: 489 EG-GIVFVSHDAHFNRTLATRVLYLHEGTLREFPGPYDEFLRW 530 +G ++F SHD + RVL +H G L + P + R+ Sbjct: 184 KGRTVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPRELIQRY 226 Score = 66.6 bits (161), Expect = 2e-12 Identities = 67/236 (28%), Positives = 97/236 (41%), Gaps = 33/236 (13%) Query: 4 VVLEGVGARVGERVLFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRVVYS 63 V G+ R G R +S++V +G RA ++GPNGSGK+TLLR+++G+ P G V Sbjct: 5 VEARGLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSV--- 61 Query: 64 GGARVGYLPQWGITTPDGTVWXXXXXXXXXXXXXXXXVHALGEEAARVDGPQALRIAEEM 123 RV WG DG W A R+ G + + + + Sbjct: 62 ---RVCGYDVWG----DG--WREARGLIGFAPQD-------PPMARRMTGAEYITVVGGL 105 Query: 124 ASLQEAILFSGYYEREGEIHRVLKGLGFDEADFSRPCGTFSGGWQMRIAXXXXXXXXXXX 183 L + E RVL+ LGF++ R SGG + + Sbjct: 106 LGLSPGV-------ARREARRVLEMLGFEDV-LGRVVARLSGGQRRALGIALALASNPEV 157 Query: 184 XXXDEPTNYLDLEAR--IW--LRSFLKGWEGAVVTVSHDRDFLDALIDEVVEIFAG 235 DEP + LD+ AR +W LR KG V+ SHD +A D V+ + G Sbjct: 158 VVLDEPGSGLDVRARESLWASLRKAFKG--RTVLFSSHDPQEAEAESDRVLIMHRG 211 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 76.6 bits (187), Expect = 2e-15 Identities = 119/496 (23%), Positives = 186/496 (37%), Gaps = 61/496 (12%) Query: 27 QEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRVVYSGGARVGYLPQWGITTPDGTVWXX 86 +EG ++G NG+GK+T LRI+AG +P+ GRV GG P+W Sbjct: 104 REGQVVGLLGRNGTGKTTALRILAGELKPNLGRV--EGGE-----PEWDEILKRFRGSEL 156 Query: 87 XXXXXXXXXXXXXXVHALGEEAARVDGPQALRIAEEMASLQEAILFSGYYEREGEIHRVL 146 H + Q + + + L ER G + Sbjct: 157 QTYFRKLVDGKLRVAHKI----------QYVELVPRRLKGRVRDLLKRADER-GVALELA 205 Query: 147 KGLGFDEADFSRPCGTFSGGWQMRIAXXXXXXXXXXXXXXDEPTNYLDLEARIWLRSFLK 206 + +G D+ F R SGG ++ DEP++YLD+ R+ + + Sbjct: 206 EQVGLDKV-FDRDVRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIA 264 Query: 207 GWE--GA-VVTVSHDRDFLDALIDEVVEIFAGGVKRYRGTYSRYEAQRTQEIARLIKAYE 263 G GA V+ V HD LD + ++V I G Y G S+ + R + I ++ Y Sbjct: 265 GAARPGAYVMVVEHDLAVLD-YVSDLVHILYGEPGAY-GIVSKPYSTR-EGINVFLQGYL 321 Query: 264 AQQKERERLQAFIDRFRANANRASQVQARILRLEKMEEVAXXXXXXXXXXRFPSAPPSSR 323 + R R + + FR A A R + F Sbjct: 322 PAENIRLRKEPIL--FRKPAPEAQPAAPGGGRQASRRRIVGWTGLRVALDGF-------- 371 Query: 324 VLVQTEGLGKAYGXXXXXXXXXXXXXXXXXXXIAGPNGAGKTTLLRILAGEDLAYTGTLR 383 T G G YG +AGPNG GKTT +R LAG G + Sbjct: 372 --TLTSGEGALYGGEVIG--------------VAGPNGIGKTTFVRTLAGALKPVEGAVY 415 Query: 384 -YGTGVVPGYFAQDVAERLSGPQTVLEEALRVAAGKEQEARDVLGAFLFRGEEVDKPLA- 441 Y + Y Q ++ S P +E+ L+ A L L + +DK L Sbjct: 416 PYVEDLRVSYKPQYISPE-SLPDATVEQVLKAANPAILAPGSWLNLELVKRMRLDKLLER 474 Query: 442 ---VLSGGERSRLALARLFFSGANLLILDEPTNHLDLHTKDALCDAL----SSFEGGIVF 494 LSGGE ++A+A A++ +LDEP+ +LD+ + + A+ + E + Sbjct: 475 RVRTLSGGELQKVAVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALV 534 Query: 495 VSHDAHFNRTLATRVL 510 V HD ++ R++ Sbjct: 535 VEHDLMILDYVSDRIM 550 Score = 57.8 bits (138), Expect = 8e-10 Identities = 63/234 (26%), Positives = 90/234 (38%), Gaps = 56/234 (23%) Query: 4 VVLEGVGARVGERVLFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRVV-Y 62 V L+G GE L+ G V GPNG GK+T +R +AG +P EG V Y Sbjct: 366 VALDGFTLTSGEGALYG--------GEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPY 417 Query: 63 SGGARVGYLPQW--GITTPDGTVWXXXXXXXXXXXXXXXXVHALGEEAARVDGPQALRIA 120 RV Y PQ+ + PD TV E+ + P Sbjct: 418 VEDLRVSYKPQYISPESLPDATV----------------------EQVLKAANP------ 449 Query: 121 EEMASLQEAILFSGYYEREGEIHRVLKGLGFDEADFSRPCGTFSGGWQMRIAXXXXXXXX 180 AIL G + ++K + D+ R T SGG ++A Sbjct: 450 --------AILAPGSWLN----LELVKRMRLDKL-LERRVRTLSGGELQKVAVAAALARE 496 Query: 181 XXXXXXDEPTNYLDLEARIW----LRSFLKGWEGAVVTVSHDRDFLDALIDEVV 230 DEP+ YLD+E R+ +R ++ E A + V HD LD + D ++ Sbjct: 497 ADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALVVEHDLMILDYVSDRIM 550 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 70.5 bits (171), Expect = 1e-13 Identities = 78/277 (28%), Positives = 113/277 (40%), Gaps = 57/277 (20%) Query: 2 PGVVLEGVGARVGERVLFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRVV 61 P V EGV R+G R + D+S TV G VVGPNG+GK+TL R + GL D GRV Sbjct: 7 PAVEAEGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVA 66 Query: 62 Y-------SGGA---RVGYLPQWGITTPDGTVWXXXXXXXXXXXXXXXXVHALGEEAARV 111 +GG+ RV YLP+ GE + Sbjct: 67 LLGEPVERAGGSLFRRVAYLPE------------------------------DGEPYRNM 96 Query: 112 DGPQALRIAEEMASLQEAILFSGYYEREGEIHRVLKGLGFDEADFSRPCGTFSGGWQMRI 171 G + LR+ + +++ GY E L GLG + R ++S G + R+ Sbjct: 97 TGHEFLRLYASIYGVED---LEGYLEEASR----LSGLGGRLGERVR---SYSKGMRRRL 146 Query: 172 AXXXXXXXXXXXXXXDEPTNYLDLEARIWLRSFLKGWEG----AVVTVSHDRDFLDALID 227 DEPT LD + +R LK + V+ SH+ ++++ Sbjct: 147 LVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERHGVTVLLSSHNMYEVESVCS 206 Query: 228 EVVEIFAGGVKRYRGTYSRYEAQRTQEIARLIKAYEA 264 E+ I +G + Y G S EA R + L +AY A Sbjct: 207 EITMISSGRIV-YSG--SPGEAVRRTGASSLEEAYVA 240 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 64.3 bits (155), Expect = 9e-12 Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 26/229 (11%) Query: 324 VLVQTEGLGKAYGXXXXXXXXXXXXXXXXXXXIAGPNGAGKTTLLRILAGEDLAYTGTLR 383 V V+ + + +YG + GP+G GKTT+L+++AG G + Sbjct: 4 VEVRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVF 63 Query: 384 YG----TGVVP-----GYFAQDVAERLSGPQTVLEEA---LRVAAGKEQEAR-------D 424 +G TG+ P G+ QD+A L TV + LR E R + Sbjct: 64 FGGVDYTGLPPERRSVGFVFQDLA--LFPHMTVYDNVAFGLRARGFSGGEVRRQVEWALE 121 Query: 425 VLGAFLFRGEEVDKPLAVLSGGERSRLALARLFFSGANLLILDEPTNHLDLHTKDALCDA 484 +G R E + + + LSGG++ R+ALAR +L+LDEP +HLD + L Sbjct: 122 TVGLTPPR-EFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAE 180 Query: 485 LSSFE----GGIVFVSHDAHFNRTLATRVLYLHEGTLREFPGPYDEFLR 529 L + +++V+HD LA ++ + +G + + P + + R Sbjct: 181 LKRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEVYTR 229 Score = 54.3 bits (129), Expect = 9e-09 Identities = 62/247 (25%), Positives = 101/247 (40%), Gaps = 42/247 (17%) Query: 4 VVLEGVGARVGERVLFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRVVYS 63 V L+ V A GE +S++ E AV+GP+G GK+T+L+++AGL +P GRV + Sbjct: 6 VRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFG 65 Query: 64 GGARVGYLPQWGITTPDGTVWXXXXXXXXXXXXXXXXVHALGEEAARVDGPQALRIAEEM 123 G G P+ V + ++ A + + + + Sbjct: 66 GVDYTGLPPE------------------------RRSVGFVFQDLALF---PHMTVYDNV 98 Query: 124 ASLQEAILFSGYYEREGEIHRVLK------GLGFDEADFSRPCGTFSGGWQMRIAXXXXX 177 A A FSG GE+ R ++ GL R SGG Q R+A Sbjct: 99 AFGLRARGFSG-----GEVRRQVEWALETVGLTPPREFMGRRVTGLSGGQQQRVALARAI 153 Query: 178 XXXXXXXXXDEPTNYLDLEARIWLRSFLKGWE----GAVVTVSHDRDFLDALIDEVVEIF 233 DEP ++LD + R L + LK + ++ V+HD+ L D +V + Sbjct: 154 AYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQRKLGSTMIYVTHDQWEAMELADTLVIMR 213 Query: 234 AGGVKRY 240 G + ++ Sbjct: 214 DGRIVQH 220 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 63.9 bits (154), Expect = 1e-11 Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 21/223 (9%) Query: 326 VQTEGLGKAYGXXXXXXXXXXXXXXXXXXXIAGPNGAGKTTLLRILAGEDLAYTGTLRYG 385 V+ EG+ K +G I GP+G+GKTTLL ++AG G + + Sbjct: 4 VKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFN 63 Query: 386 ----TGVVP-----GYFAQDVAERLSGPQTVLEEA---LRVAAGKEQEARD-VLGAFLFR 432 T + P G Q+ A L TV E LR+ E ++ VL Sbjct: 64 DVDVTDLPPNKRNIGLVFQNYA--LYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVAKLL 121 Query: 433 GEE--VDKPLAVLSGGERSRLALARLFFSGANLLILDEPTNHLDLHTKDALCDALSSFEG 490 G E +D+ A LSGG++ R+ALAR +L+LDEP ++LD + + L + Sbjct: 122 GIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQK 181 Query: 491 GI----VFVSHDAHFNRTLATRVLYLHEGTLREFPGPYDEFLR 529 + ++V+HD +A R+ + G +++ P+D + + Sbjct: 182 ELGITAIYVTHDQSEALAMADRIAIIASGVIQQVGKPWDVYYK 224 Score = 60.1 bits (144), Expect = 2e-10 Identities = 69/272 (25%), Positives = 108/272 (39%), Gaps = 51/272 (18%) Query: 1 MPGVVLEGVGARVGERVLFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRV 60 M V LEGV G V D++ +++ +++GP+GSGK+TLL ++AG+ +P GR+ Sbjct: 1 MASVKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRI 60 Query: 61 VYS---------GGARVGYLPQWGITTPDGTVWXXXXXXXXXXXXXXXXVHALGEEAARV 111 ++ +G + Q P TV+ + Sbjct: 61 YFNDVDVTDLPPNKRNIGLVFQNYALYPHMTVY------------------------ENI 96 Query: 112 DGPQALRIAEEMASLQEAILFSGYYEREGEIHRVLKGLGFDEADFSRPCGTFSGGWQMRI 171 P LR E A ++E +L V K LG E R SGG Q R+ Sbjct: 97 AFPLRLRNFGEPA-IKEKVL------------SVAKLLGI-EGLLDRYPAQLSGGQQQRV 142 Query: 172 AXXXXXXXXXXXXXXDEPTNYLDLEARIWLRSFLKGWEG----AVVTVSHDRDFLDALID 227 A DEP + LD RI +RS LK + + V+HD+ A+ D Sbjct: 143 ALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQKELGITAIYVTHDQSEALAMAD 202 Query: 228 EVVEIFAGGVKRYRGTYSRYEAQRTQEIARLI 259 + I +G +++ + Y R +A I Sbjct: 203 RIAIIASGVIQQVGKPWDVYYKPRNVFVASFI 234 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 62.8 bits (151), Expect = 3e-11 Identities = 60/243 (24%), Positives = 94/243 (38%), Gaps = 33/243 (13%) Query: 1 MPGVVLEGVGARVGERVLFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRV 60 M GV LEG+ R G+ V + +++G ++GP+G GK+T LRI+AGL PD GRV Sbjct: 1 MAGVRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRV 60 Query: 61 VYSGGARVGYLPQWGITTPDGTVWXXXXXXXXXXXXXXXXVHALGEEAARVDGPQALRIA 120 + G G P+ D V A + ++ + +R Sbjct: 61 YFDGRDVTGLPPK------DRNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRV 114 Query: 121 EEMASLQEAILFSGYYEREGEIHRVLKGLGFDEADFSRPCGTFSGGWQMRIAXXXXXXXX 180 A L E Y + SGG Q R+A Sbjct: 115 RWAAELLEIDHLLDRYPHQ-----------------------LSGGQQQRVAVARAIVTE 151 Query: 181 XXXXXXDEPTNYLDLEARIWLRSFLKGWEG----AVVTVSHDRDFLDALIDEVVEIFAGG 236 DEP + LD RI +RS +K + ++ V+HD+ + D +V + G Sbjct: 152 PEVLLMDEPLSNLDAILRIKMRSEIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGE 211 Query: 237 VKR 239 +++ Sbjct: 212 IQQ 214 Score = 57.0 bits (136), Expect = 1e-09 Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 17/221 (7%) Query: 326 VQTEGLGKAYGXXXXXXXXXXXXXXXXXXXIAGPNGAGKTTLLRILAGEDLAYTGTLRYG 385 V+ EG+ K +G + GP+G GKTT LRI+AG + G + + Sbjct: 4 VRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFD 63 Query: 386 TGVVPGYFAQDVAERLSGPQTVLEEALRVAAG-------KEQEARDVLGAFLFRGE--EV 436 V G +D + L +RV K+ +++ + E E+ Sbjct: 64 GRDVTGLPPKDRNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAAELLEI 123 Query: 437 DKPLA----VLSGGERSRLALARLFFSGANLLILDEPTNHLDLHTKDALCDALSSFEGGI 492 D L LSGG++ R+A+AR + +L++DEP ++LD + + + + + Sbjct: 124 DHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKLQRRL 183 Query: 493 ----VFVSHDAHFNRTLATRVLYLHEGTLREFPGPYDEFLR 529 ++V+HD + R++ ++ G +++ P D + R Sbjct: 184 GVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDVYHR 224 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 61.6 bits (148), Expect = 6e-11 Identities = 64/200 (32%), Positives = 90/200 (45%), Gaps = 22/200 (11%) Query: 356 IAGPNGAGKTTLLRILAGEDLAYTGTLRYGTGVVP------------GYFAQD--VAERL 401 +AG NGAGKTT LR+L G +G R GV P GY +D V ERL Sbjct: 45 LAGLNGAGKTTSLRVLVGLLSRDSGEARV-LGVDPWGGGFERVKGEVGYLPEDASVYERL 103 Query: 402 SGPQTVLEEALRVAAGKEQEARDVLGAFLFRG---EEVDKPLAVLSGGERSRLALARLFF 458 +G + +L A R+ +G V A + G E++ + S G + RL L Sbjct: 104 TGMENILFYA-RLYSGWRDVEELVENAVFYSGLSREDLARRAGGYSKGMKRRLLLGITLM 162 Query: 459 SGANLLILDEPTNHLDLHTKDALCDALS--SFEG-GIVFVSHDAHFNRTLATRVLYLHEG 515 S L++LDEPT+ +D + + L S EG I+ +HD +A RV +H G Sbjct: 163 SKPRLVVLDEPTSGVDPIASNRIKKILRGLSREGRAILVTTHDLALAEEIADRVTIIHGG 222 Query: 516 TLREFPGPYDEFLRWWEETL 535 + PY + ETL Sbjct: 223 STVASGPPYRLVEEYCGETL 242 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 61.6 bits (148), Expect = 6e-11 Identities = 62/213 (29%), Positives = 92/213 (43%), Gaps = 25/213 (11%) Query: 324 VLVQTEGLGKAYGXXXXXXXXXXXXXXXXXXXIAGPNGAGKTTLLRILAGEDLAYTGT-- 381 V+++ EGL K YG GPNGAGKTT +R+L G +G+ Sbjct: 3 VVIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSAR 62 Query: 382 -------------LRYGTGVVPGYFAQDVAERLSGPQTVLEEALRVAAG-KEQEARDVLG 427 +R G VPG F + +SG + +L+ R+ G R++L Sbjct: 63 VFGVELYNPGASGVRRRVGYVPGEF--EFYGGVSGGR-MLDYWCRLVGGCSRGVVRELLE 119 Query: 428 AFLFRGEEVDKPLAVLSGGERSRLALARLFFSGANLLILDEPTNHLDLHTKDALCDALSS 487 AF +++ + S G + LAL F +L+++DEPT LD + + D + S Sbjct: 120 AFPL---PLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDFVRS 176 Query: 488 --FEGGIVFV-SHDAHFNRTLATRVLYLHEGTL 517 EG VF SH + +A RV L G L Sbjct: 177 KAREGVTVFFSSHVLSEVQRVADRVGLLRSGVL 209 Score = 44.7 bits (104), Expect = 7e-06 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 13/83 (15%) Query: 3 GVVLE--GVGARVGERVLFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRV 60 GVV+E G+ R G +S++V G +GPNG+GK+T +R++ G P G Sbjct: 2 GVVIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSA 61 Query: 61 ------VYSGGA-----RVGYLP 72 +Y+ GA RVGY+P Sbjct: 62 RVFGVELYNPGASGVRRRVGYVP 84 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 61.2 bits (147), Expect = 7e-11 Identities = 65/246 (26%), Positives = 99/246 (40%), Gaps = 23/246 (9%) Query: 322 SRVLVQTEGLGKAYGXXXXXXXXXXXXXXXXXXXIAGPNGAGKTT-------LLRILAGE 374 S +V E L K YG + GPNGAGKTT LLR +GE Sbjct: 3 SEAMVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGE 62 Query: 375 D-------LAYTGTLRYGTGVVPGYFAQDVAERLSGPQTVLEEALRV---AAGKEQEARD 424 + G +R G+VP D + +SG V +A ++ + R+ Sbjct: 63 AWIAGYSIVREPGNVRRVIGLVPQDLTAD--DEMSGWDNVYIQARLYGLPSSEARERTRE 120 Query: 425 VLGAFLFRGEEVDKPLAVLSGGERSRLALARLFFSGANLLILDEPTNHLDLHTKDALCDA 484 VL +L E + +A SGG R +L +A +L LDEPT LD+H++ +L Sbjct: 121 VLD-YLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRY 179 Query: 485 LSSFEGGIVFVSHDAHF---NRTLATRVLYLHEGTLREFPGPYDEFLRWWEETLIPSRRD 541 + + V + H+ L+ RV + G + P + R ET+ +D Sbjct: 180 IEDLKRSAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEELKARVKGETVYIELKD 239 Query: 542 TPHPSP 547 + P Sbjct: 240 PEYTEP 245 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 59.3 bits (142), Expect = 3e-10 Identities = 65/267 (24%), Positives = 99/267 (37%), Gaps = 41/267 (15%) Query: 1 MPGVVLEGVGARVGERVLFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRV 60 M G+ LE V R G V +S + +G ++GP+G GK+T LR++AG PDEGR Sbjct: 1 MAGIRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGR- 59 Query: 61 VYSGGARVGYLPQWGITT----PDGTVWXXXXXXXXXXXXXXXXVHALGEEAARVDGPQA 116 VY G V L + T + +W A G + ++ + Sbjct: 60 VYIGSRDVTMLKPYERNTAMVFQNYALWPHMRVFDNI---------AYGLKLRKLPRSEI 110 Query: 117 LRIAEEMASLQEAILFSGYYEREGEIHRVLKGLGFDEADFSRPCGTFSGGWQMRIAXXXX 176 +R A L E Y + SGG Q R+A Sbjct: 111 VRRVRWAAELLEIDHLLDRYPHQ-----------------------LSGGQQQRVAVARA 147 Query: 177 XXXXXXXXXXDEPTNYLDLEARIWLRSFL----KGWEGAVVTVSHDRDFLDALIDEVVEI 232 DEP + LD R+ +R + K +V V+HD++ ++ V + Sbjct: 148 IVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQKRLGVTIVYVTHDQEEALSISHRVAVM 207 Query: 233 FAGGVKRYRGTYSRYEAQRTQEIARLI 259 G V++ YE T +A I Sbjct: 208 NRGRVEQVGTPMEVYEKPATYFVATFI 234 Score = 55.8 bits (133), Expect = 3e-09 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 17/219 (7%) Query: 326 VQTEGLGKAYGXXXXXXXXXXXXXXXXXXXIAGPNGAGKTTLLRILAGEDLAYTGTLRYG 385 ++ E + K +G + GP+G GKTT LR++AG + G + G Sbjct: 4 IRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIG 63 Query: 386 TGVVPGYFAQDVAERLSGPQTVLEEALRV----AAG---KEQEARDVLGAFLFRGE--EV 436 + V + + L +RV A G ++ +++ + E E+ Sbjct: 64 SRDVTMLKPYERNTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWAAELLEI 123 Query: 437 DKPLA----VLSGGERSRLALARLFFSGANLLILDEPTNHLDLHTKDALCDALSSFEG-- 490 D L LSGG++ R+A+AR + +L++DEP ++LD H + + + + + Sbjct: 124 DHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQKRL 183 Query: 491 --GIVFVSHDAHFNRTLATRVLYLHEGTLREFPGPYDEF 527 IV+V+HD +++ RV ++ G + + P + + Sbjct: 184 GVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVY 222 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 58.9 bits (141), Expect = 4e-10 Identities = 61/191 (31%), Positives = 82/191 (42%), Gaps = 27/191 (14%) Query: 356 IAGPNGAGKTTLLRILAGEDLAYTGTLRYGTGVVP---------------GYFAQDVAER 400 I GP+G+GKTTLL I+AG D G + V GY Q Sbjct: 45 IMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGEELRRFRLERVGYVFQQ--HN 102 Query: 401 LSGPQTVLEEAL--RVAAGKEQEAR--DVLGAFLFRGEEVDKPLAVLSGGERSRLALARL 456 L T LE L AGK R ++L G+E P LSGGE+ RLA+A Sbjct: 103 LIPTLTALENILLPMALAGKANRLRGQELLRRVGLGGKERRYP-EELSGGEQQRLAVAVA 161 Query: 457 FFSGANLLILDEPTNHLDLHTKD----ALCDALSSFEGGIVFVSHDAHFNRTLATRVLYL 512 + +++ DEPT LD+ T + L + S +V +HD R +A RV + Sbjct: 162 LANDPPIIVADEPTGELDIATGERIVRILLEEAHSRGKTVVLTTHDPRVAR-MADRVAVI 220 Query: 513 HEGTLREFPGP 523 +G LR P Sbjct: 221 EDGRLRGVYSP 231 Score = 53.9 bits (128), Expect = 1e-08 Identities = 87/314 (27%), Positives = 119/314 (37%), Gaps = 89/314 (28%) Query: 4 VVLEGVGARV---GERVL-FTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGR 59 VV+EGV GER++ ++S +V G A++GP+GSGK+TLL I+AG+ P+ GR Sbjct: 11 VVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGR 70 Query: 60 VVYSGG---------------ARVGYLPQWGITTPDGTVWXXXXXXXXXXXXXXXXVHAL 104 V+ G RVGY+ Q P T AL Sbjct: 71 VIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIPTLT-----------ALENILLPMAL 119 Query: 105 GEEAARVDGPQALRIAEEMASLQEAILFSGYYEREGEIHRVLKGLGFDEADFSRPCGTFS 164 +A R+ G + LR RV GLG E + S Sbjct: 120 AGKANRLRGQELLR-------------------------RV--GLGGKERRYPE---ELS 149 Query: 165 GGWQMRIAXXXXXXXXXXXXXXDEPTNYLDLE-----ARIWLRSFLKGWEGAVVTVSHDR 219 GG Q R+A DEPT LD+ RI L + V+T R Sbjct: 150 GGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEAHSRGKTVVLTTHDPR 209 Query: 220 DFLDALIDEVVEIFAGGVKRYRGTYS-----------RYEAQRTQE--IARLIKAYEAQQ 266 + + D V I G R RG YS EA++ E + R++ E + Sbjct: 210 --VARMADRVAVIEDG---RLRGVYSPSRIAGATGFGEVEAEKAVEAVMRRILDDAERRL 264 Query: 267 KERERLQAFIDRFR 280 +E E DRFR Sbjct: 265 REAE------DRFR 272 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 58.5 bits (140), Expect = 5e-10 Identities = 54/220 (24%), Positives = 99/220 (45%), Gaps = 28/220 (12%) Query: 325 LVQTEGLGKAYGXXXXXXXXXXXXXXXXXXXIAGPNGAGKTTLLR-------------IL 371 L++ GL +Y I GP+G+GK+TLL+ + Sbjct: 4 LLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVF 63 Query: 372 AGEDLAYTG-----TLRYGTGVVPGYFA----QDVAERLSGPQTVLEEALRVAAGKEQEA 422 G D+ +R G +P ++ V ++ P LE+AL ++ +E Sbjct: 64 RGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYP---LEKALGLSRRDAEER 120 Query: 423 RDVLGAFLFRGEEVDKPLAVLSGGERSRLALARLFFSGANLLILDEPTNHLDLHTKDALC 482 + L + + A LSGG++ R ALAR ++L+LDEPT+ LD ++ + Sbjct: 121 AVKYLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVL 180 Query: 483 DAL---SSFEGGIVFVSHDAHFNRTLATRVLYLHEGTLRE 519 +AL ++ ++ V+H+A F +A R+ ++ +G ++E Sbjct: 181 EALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKE 220 Score = 55.5 bits (132), Expect = 4e-09 Identities = 66/242 (27%), Positives = 94/242 (38%), Gaps = 55/242 (22%) Query: 14 GERVLFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRVVYSG--------- 64 GE+VL + ++ G + ++GP+GSGKSTLL+ + L EPD G +V+ G Sbjct: 16 GEKVL-KGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVFRGVDVTRLSGS 74 Query: 65 -----GARVGYLPQWGITTPDGTVWXXXXXXXXXXXXXXXXVHALGEEAARVDGPQALRI 119 ++GYLPQ P TV ALG + R Sbjct: 75 QLRMVRRKIGYLPQSYSLFPHMTV---------LRNITYPLEKALG---------LSRRD 116 Query: 120 AEEMASLQEAILFSGYYEREGEIHRVLKGLGFDEADFSRPCGTFSGGWQMRIAXXXXXXX 179 AEE A + L LG ++ P SGG Q R A Sbjct: 117 AEERAV------------------KYLSMLGIEDLAHRHP-ARLSGGQQQRAALARALAM 157 Query: 180 XXXXXXXDEPTNYLDLEARIWLRSFL---KGWEGAVVTVSHDRDFLDALIDEVVEIFAGG 236 DEPT+ LD E+R + L A++ V+H+ DF + D + + G Sbjct: 158 EPDILLLDEPTSALDPESRADVLEALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGI 217 Query: 237 VK 238 VK Sbjct: 218 VK 219 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 57.4 bits (137), Expect = 1e-09 Identities = 55/193 (28%), Positives = 85/193 (44%), Gaps = 30/193 (15%) Query: 356 IAGPNGAGKTTLLRILAGEDLAYTGTLRYGTGVVPGYFAQDVAER--------------L 401 +AGP G GK+T+LR+ AG T + GY +V R L Sbjct: 34 LAGPTGGGKSTILRVAAG----------LATRIYGGYLRGEVEARGKPVLVPQDYDLFIL 83 Query: 402 S-GPQTVLEEALRVAAGKEQEARDV---LGAFLFRGEEVDKPLAVLSGGERSRLALARLF 457 S P+ LE + EAR L L + +D+ ++ LS GER R+A+A Sbjct: 84 SLTPREELEYCYEASGLPPWEARREAVRLAEELGIEDLLDRRVSKLSAGERQRVAIASAL 143 Query: 458 FSGANLLILDEPTNHLDLHTKDALCDALSSFE-GGIVFVSHDAHFNRTLATRVLYLHEGT 516 GA +L++DEP + D ++L L + G+V H H+ A+ V +++G Sbjct: 144 ALGAEVLLMDEPLAYQDPLGVESLIRLLRRLDVEGVVVAEHRVHYLLPAASSVYLVYDGR 203 Query: 517 LREF-PGPYDEFL 528 ++ PG E L Sbjct: 204 AKQLGPGEAVEVL 216 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 57.4 bits (137), Expect = 1e-09 Identities = 63/202 (31%), Positives = 87/202 (43%), Gaps = 30/202 (14%) Query: 356 IAGPNGAGKTTLLRILAGEDLAYTGTLRYGTGVVP------------GYFAQ-DVAERLS 402 + GPNGAGKTTLL+ + G G + GV P GY + V + Sbjct: 34 VLGPNGAGKTTLLKTILGLVKPSAGEILV-EGVNPRSPGFEKLLPRIGYVPELPVVPLWT 92 Query: 403 GPQTVLEEALRV-------AAGKEQEARDVLGAFLFRGEEVDKPLAVLSGGERSRLALAR 455 P +LE R+ A + +EA +V+G E + P+ LS G R R+ +A+ Sbjct: 93 TPCILLETLARLEGYTSVEARVRAREALEVVGL----AGECETPIGKLSKGARKRVLVAQ 148 Query: 456 LFFSGANLLILDEPTNHLDLHTKDALCDALSSF--EGGIVFV-SHDAHFNRTLATRVLYL 512 F LL+LDEP + LD + + L + EG V V SH +AT VL L Sbjct: 149 AFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAREGATVIVSSHILRELEDIATHVLVL 208 Query: 513 HEGTLREFPGPYDEFLRWWEET 534 L F G +E W T Sbjct: 209 KTDQL--FYGSIEELRAWLSGT 228 Score = 50.4 bits (119), Expect = 1e-07 Identities = 60/253 (23%), Positives = 96/253 (37%), Gaps = 58/253 (22%) Query: 12 RVGERVLFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRVVYSGG------ 65 R G+R + ++ +T G+ V+GPNG+GK+TLL+ + GL +P G ++ G Sbjct: 13 RFGQRYAYRNVEFTFTSGI-LGVLGPNGAGKTTLLKTILGLVKPSAGEILVEGVNPRSPG 71 Query: 66 -----ARVGYLPQWGITTPDGTVWXXXXXXXXXXXXXXXXVHALGEEAARVDGPQALRIA 120 R+GY+P+ P +W L E AR++G ++ Sbjct: 72 FEKLLPRIGYVPE----LPVVPLWTTPC--------------ILLETLARLEGYTSVEAR 113 Query: 121 EEMASLQEAILFSGYYEREGEIHRVLKGLGFDEADFSRPCGTFSGGWQMRIAXXXXXXXX 180 E + +G E P G S G + R+ Sbjct: 114 VRAREALEVVGLAGECE--------------------TPIGKLSKGARKRVLVAQAFIGE 153 Query: 181 XXXXXXDEPTNYLDLEARIWLRSFLK--GWEGAVVTVSHD--RDFLD----ALIDEVVEI 232 DEP + LD E +R L+ EGA V VS R+ D L+ + ++ Sbjct: 154 RELLVLDEPYSGLDPEWVYRVRELLRTVAREGATVIVSSHILRELEDIATHVLVLKTDQL 213 Query: 233 FAGGVKRYRGTYS 245 F G ++ R S Sbjct: 214 FYGSIEELRAWLS 226 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 57.0 bits (136), Expect = 1e-09 Identities = 61/223 (27%), Positives = 91/223 (40%), Gaps = 29/223 (13%) Query: 356 IAGPNGAGKTTLLRILAGEDLAYTGTL--------------RYGTGVVPGYFAQDVAERL 401 + G NGAGKTTL+RIL GE G + G+ Y + E + Sbjct: 44 LLGENGAGKTTLMRILYGEIKPTMGEIYVWGRKVSWRGPWDAIRNGIAMVYQQFRLVESM 103 Query: 402 SGPQTVLEEALRVAAGKEQEARDVLGAFLFRGEEVD--KPLAVLSGGERSRLALARLFFS 459 + + + + G+ + R L G E+D K +A L G R R+ + + Sbjct: 104 TVEENIAIYLSSLGLGRSEARRRTLETAERLGLEIDLAKTVADLPMGARQRVEIIKALSG 163 Query: 460 GANLLILDEPTNHLDLHTKDALCDALSSFEG---GIVFVSHDAHFNRTLATRVLYLHEGT 516 GA +LILDEPT++L + L L + +V+++H +A RV L G Sbjct: 164 GAKVLILDEPTSNLTPLEAEKLFSTLRLLKDMGVSVVYITHKLGEVVRVADRVTVLRRGR 223 Query: 517 LR---EFPG--PYDEFLRWWEETLIPSRRDTPHPSPPSRTESE 554 + E G +E R TL P P P PP + E Sbjct: 224 VSAVIEDVGRTSEEELARLMVGTLPP-----PTPRPPGKVGRE 261 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 56.2 bits (134), Expect = 2e-09 Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 25/227 (11%) Query: 326 VQTEGLGKAYGXXXXXXXXXXXXXXXXXXXIAGPNGAGKTTLLRILAG------------ 373 ++ EG+ K +G + GP+G GKTT LR++AG Sbjct: 4 IRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILID 63 Query: 374 -EDLAYTGTLRYGTGVVPGYFA----QDVAERLSGPQTVLEEALRVAAGKEQEARDVLG- 427 ED+ + +V +A V + ++ + + + + K+ R V+ Sbjct: 64 GEDVTFKDPKDRNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLT--KDDIRRRVIEV 121 Query: 428 AFLFRGEEV-DKPLAVLSGGERSRLALARLFFSGANLLILDEPTNHLDLHTKDALCDALS 486 A L R E++ D+ LSGG++ R+ALAR + ++DEP ++LD + A+ L Sbjct: 122 AKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELK 181 Query: 487 SFEGGI----VFVSHDAHFNRTLATRVLYLHEGTLREFPGPYDEFLR 529 + + V+V+HD ++A R+ +++G + + P + ++R Sbjct: 182 KLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEVYMR 228 Score = 54.3 bits (129), Expect = 9e-09 Identities = 26/64 (40%), Positives = 41/64 (64%) Query: 1 MPGVVLEGVGARVGERVLFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRV 60 M + LEGV R G+ V + ++++G ++GP+G GK+T LR++AGL PDEGR+ Sbjct: 1 MAEIRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRI 60 Query: 61 VYSG 64 + G Sbjct: 61 LIDG 64 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 55.1 bits (131), Expect = 5e-09 Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 34/199 (17%) Query: 356 IAGPNGAGKTTLLRILAGEDLAYTGTLRY-GTGVVPGYFAQDVAER------LSGPQTVL 408 I G +G GKTTL + + G + G + Y G + P A+D R P L Sbjct: 53 IVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARDRRLRRKLQMVFQDPYKSL 112 Query: 409 EEALRVAAGKEQEARDVLGAFLFRGEEVDKPLAV--------------------LSGGER 448 + + V +Q A ++ L RGEE + LSGG+R Sbjct: 113 DPLMPVG---DQVAEPLVIHGLARGEEARRRAVEMLETVGLTPGREFYWRKPHQLSGGQR 169 Query: 449 SRLALARLFFSGANLLILDEPTNHLDLHTKDALCDALSSFE----GGIVFVSHDAHFNRT 504 R+A+AR +++ DEP + +D+ + ++ D + + IV ++HD R Sbjct: 170 QRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTGATIVLITHDIAVARA 229 Query: 505 LATRVLYLHEGTLREFPGP 523 +A R+ ++ G + E P Sbjct: 230 VADRIAVMYLGKIVEVGEP 248 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 53.9 bits (128), Expect = 1e-08 Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 22/257 (8%) Query: 22 LSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRVVYSGGARVGYLPQWGITTPDG 81 +S+T++ G + G +GSGKSTL + GL P GR+V G R+ DG Sbjct: 28 VSFTLRRGEVLGIAGESGSGKSTLAWSILGL-VPPPGRIV---GGRIMI---------DG 74 Query: 82 TVWXXXXXXXXXXXXXXXXVHALGEEAARVDGPQAL--RIAEEMASLQEAILFSGYYERE 139 V + + A V P R EE+ + + G +E Sbjct: 75 MDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGV---GRHEAR 131 Query: 140 GEIHRVLKGLGFDEADFSRPCGTFSGGWQMRIAXXXXXXXXXXXXXXDEPTNYLDLEARI 199 ++ +L+ +G + R SGG + R+ DEPT LD+ + Sbjct: 132 QRVYELLESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQA 191 Query: 200 WLRSFLK--GWEG--AVVTVSHDRDFLDALIDEVVEIFAGGVKRYRGTYSRYEAQRTQEI 255 + + LK WE +++ ++HD + L + V+ ++ G + Y + + + + Sbjct: 192 QILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEYGPSDAVFTKPQHPYT 251 Query: 256 ARLIKAYEAQQKERERL 272 L+KA + +RL Sbjct: 252 QALLKAIPKLRGPIDRL 268 Score = 43.5 bits (101), Expect = 2e-05 Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 35/203 (17%) Query: 356 IAGPNGAGKTTLLRILAGEDLAYTGTLRYGTGVVPGYFAQDVAER--------------L 401 IAG +G+GK+TL + G + G + G ++ G ++E Sbjct: 40 IAGESGSGKSTLAWSILGL-VPPPGRIVGGRIMIDGMDVTSMSEAELRRKVRWKKVSMVF 98 Query: 402 SGPQTVL----------EEALRVAAG-----KEQEARDVLGAFLFRGEEVDKPLAVLSGG 446 G VL EE L++ G Q ++L + D+ LSGG Sbjct: 99 QGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELLESVGLHRSIADRYPHELSGG 158 Query: 447 ERSRLALARLFFSGANLLILDEPTNHLDLHTKDALCDALSSFEG----GIVFVSHDAHFN 502 ++ R+ +A +++I DEPT LD+ + + + L I+ ++HD Sbjct: 159 QKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLKKLAWEKNLSIILITHDLSVI 218 Query: 503 RTLATRVLYLHEGTLREFPGPYD 525 LA V+ ++ G + E+ GP D Sbjct: 219 AELAETVMIMYGGKIAEY-GPSD 240 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 53.5 bits (127), Expect = 2e-08 Identities = 57/179 (31%), Positives = 78/179 (43%), Gaps = 20/179 (11%) Query: 356 IAGPNGAGKTTLLRILAGEDL----------AYTGTLRYGTGVVPGYFAQDVAERLSGPQ 405 + GPNG+GKTTLLR+LAG + G +R G P + +V RL + Sbjct: 37 LLGPNGSGKTTLLRLLAGIIKPSRGRVEVCGSPPGRVRRMLGYAPA--SPEVDPRLKAVE 94 Query: 406 TVLEEALRVAAGKEQEARD---VLGAF--LFRGEEVDKPLAVLSGGERSRLALARLFFSG 460 L V+ G RD VL A + GE + LS G+R + LA + Sbjct: 95 VALLYRYGVSEGVAWGRRDWEEVLAALGEMGVGELAWRRWGELSSGQRRLVILAGVLARR 154 Query: 461 ANLLILDEPTNHLDLHTKDALCDALSSFEG--GIVFVSHDAHFNRTLATRVLYLHEGTL 517 L +LDEP + LD+ + L S G IV+ +HD A V+ L EG L Sbjct: 155 PGLALLDEPHSFLDVSNMRRVTLVLRSLRGRATIVYTTHDP-LAAMAADSVIMLREGLL 212 Score = 51.6 bits (122), Expect = 6e-08 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 7/76 (9%) Query: 4 VVLEGVGARVGERV-LFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRVVY 62 V LEGV AR + +S+++ G A++GPNGSGK+TLLR++AG+ +P GRV Sbjct: 6 VRLEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEV 65 Query: 63 SGG------ARVGYLP 72 G +GY P Sbjct: 66 CGSPPGRVRRMLGYAP 81 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 53.1 bits (126), Expect = 2e-08 Identities = 21/43 (48%), Positives = 33/43 (76%) Query: 22 LSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRVVYSG 64 +S++V+ G R ++GPNG+GK+TL I++G+ PD GRV+Y G Sbjct: 23 VSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYKG 65 Score = 43.5 bits (101), Expect = 2e-05 Identities = 58/195 (29%), Positives = 79/195 (40%), Gaps = 37/195 (18%) Query: 356 IAGPNGAGKTTLLRILAGEDLAYTGTLRYGTGVVPGYFAQDVAE----------RLSGPQ 405 + GPNGAGKTTL I++G + G + Y + G+ A + R Sbjct: 35 LIGPNGAGKTTLFNIISGIYMPDRGRVIYKGVDITGWPAYRRSRAGIARTFQIVRPLANL 94 Query: 406 TVLEEA----------LRVAAGKEQEARDVLGAFLFRGEE--VDKPLAVLSGGERSRLAL 453 TVL +R A + EA D++G G+E + K L ++ E+ RL L Sbjct: 95 TVLNNVIVGALLRTNDIREARERAMEAIDMVG---LAGKEDILAKDLNLI---EKKRLEL 148 Query: 454 ARLFFSGANLLILDEPTNHLDLHTKDALCDALSSFEG---GIVFVSHDAHFNRTLATRVL 510 AR + LL+LDE L D L L I+ V H A RV+ Sbjct: 149 ARALATQPELLLLDEIAAGLRPREVDDLVYTLLEISKRGITIIMVEHVMRAVMNFAERVI 208 Query: 511 YLH------EGTLRE 519 LH EGT RE Sbjct: 209 VLHFGEKIAEGTPRE 223 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 53.1 bits (126), Expect = 2e-08 Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 4/83 (4%) Query: 6 LEGVGARVGERVLFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRVVYS-- 63 LE V +G R + +S + G V G NGSGK+TLLR+ AGL EP GRV + Sbjct: 7 LENVWKMLGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRVSWGCP 66 Query: 64 GGAR--VGYLPQWGITTPDGTVW 84 G R VGY+ + D TVW Sbjct: 67 RGPRGCVGYVGHTPMVYGDLTVW 89 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 52.4 bits (124), Expect = 3e-08 Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 14/182 (7%) Query: 356 IAGPNGAGKTTLL----RILAGEDLAYTGTLRYGTGVVPGYFAQDVAERLSGPQTVLEEA 411 I G NG+GKTTLL R+L + + G R G + Y GP TV E+ Sbjct: 21 ILGANGSGKTTLLKLAARLLKPDRGSVEGPRRVGAALQNPYLG------FLGP-TVAEDL 73 Query: 412 LRVAAGKEQEARDVLGAFLFRGEEVDKPLAVLSGGERSRLALARLFFSGANLLILDEPTN 471 R A G+ + + + A L E + LS GE L++ G +++DEPT+ Sbjct: 74 ARTAGGRGEALKLLREAGLEYASE--RSPYTLSMGEARILSVLMAISWGPEAVVIDEPTS 131 Query: 472 HLDLHTKDALCDALSSFEGGIVFVSHDAHFNRTLATRVLYLHEGTLREFPGPYDEFLRWW 531 LD K L ++ ++ HD F +A + L +G +R G + LR Sbjct: 132 GLDGSGKRWLASLIARLGVPVLVAGHDIDFAAAVAGWAVILRDGRVR-VSGDMERVLRML 190 Query: 532 EE 533 E Sbjct: 191 PE 192 Score = 49.3 bits (116), Expect = 3e-07 Identities = 57/221 (25%), Positives = 83/221 (37%), Gaps = 54/221 (24%) Query: 21 DLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRVVYSGGARVGYL---PQWGIT 77 D++ ++ GV A++G NGSGK+TLL++ A L +PD G V G RVG P G Sbjct: 9 DVTLSIPRGV-TAILGANGSGKTTLLKLAARLLKPDRGSV--EGPRRVGAALQNPYLGFL 65 Query: 78 TPDGTVWXXXXXXXXXXXXXXXXVHALGEEAARVDGPQALRIAEEMASLQEAILFSGYYE 137 P + E+ AR G + Sbjct: 66 GP-----------------------TVAEDLARTAGGR---------------------- 80 Query: 138 REGEIHRVLKGLGFDEADFSRPCGTFSGGWQMRIAXXXXXXXXXXXXXXDEPTNYLDLEA 197 GE ++L+ G + A P T S G ++ DEPT+ LD Sbjct: 81 --GEALKLLREAGLEYASERSPY-TLSMGEARILSVLMAISWGPEAVVIDEPTSGLDGSG 137 Query: 198 RIWLRSFLKGWEGAVVTVSHDRDFLDALIDEVVEIFAGGVK 238 + WL S + V+ HD DF A+ V + G V+ Sbjct: 138 KRWLASLIARLGVPVLVAGHDIDFAAAVAGWAVILRDGRVR 178 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 50.1 bits (118), Expect = 2e-07 Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 19/161 (11%) Query: 356 IAGPNGAGKTTLLRILAG-----------EDLAYTGTLRYGTGVVPGYFAQDVAERLSGP 404 I GPNGAGKTT L+ + G + TG G GY Q+ + P Sbjct: 33 IIGPNGAGKTTFLKAILGLIKPARGRVFLDGFEATGRPEM-VGRYAGYVPQNPSAPKLSP 91 Query: 405 QTVLEEA-----LRVAAGKEQEARDVLGAFLFRGEEVDKPLAVLSGGERSRLALARLFFS 459 TV E LR + A +VL RGE ++ L LS G R+ +AR Sbjct: 92 MTVREFVETSLRLRGVTRARERAVEVLHTLGIRGEVLESRLWELSMGMLQRVFIARAIAP 151 Query: 460 GANLLILDEPTNHLDLHTKDALCDALSSF--EGGIVFVSHD 498 +L++DEP +D + + ++ E ++ SHD Sbjct: 152 DPKMLVMDEPLASVDPAGRMEIARIIAGLARERLVLMTSHD 192 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 49.7 bits (117), Expect = 2e-07 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 4/81 (4%) Query: 443 LSGGERSRLALARLFFSGANLLILDEPTNHLDLHTKDALCDALSSFE----GGIVFVSHD 498 LSGG+R R+A+AR F +L++ DEP + LD+ + + + L F ++F++HD Sbjct: 196 LSGGQRQRVAIARAFILNPSLVVADEPVSMLDVSIRAEILELLLGFREKLGTSLLFITHD 255 Query: 499 AHFNRTLATRVLYLHEGTLRE 519 R + R+ ++ G + E Sbjct: 256 LAVARYICDRIAVMYLGKIVE 276 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 49.7 bits (117), Expect = 2e-07 Identities = 23/67 (34%), Positives = 39/67 (58%) Query: 6 LEGVGARVGERVLFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRVVYSGG 65 +E + R G V ++ ++ G ++GPNGSGK+TL+ +++G +PD GRV++ G Sbjct: 9 VEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLFKGR 68 Query: 66 ARVGYLP 72 G P Sbjct: 69 DITGMSP 75 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 49.3 bits (116), Expect = 3e-07 Identities = 24/71 (33%), Positives = 38/71 (53%) Query: 7 EGVGARVGERVLFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRVVYSGGA 66 E + R G ++S V+ G ++GPNG+GK++LL ++ G+ +P GRV + G Sbjct: 5 ENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRD 64 Query: 67 RVGYLPQWGIT 77 G P IT Sbjct: 65 ITGLKPHQRIT 75 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 48.9 bits (115), Expect = 4e-07 Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 20/134 (14%) Query: 356 IAGPNGAGKTTLLRILAGEDLAYTGTLRYGT-------------------GVVPGYFAQD 396 + GPNGAGKTTLL+ ++G G + G+ GV+ + Sbjct: 36 LIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNREPDEIARRGVIYVMEGRR 95 Query: 397 VAERLSGPQTVLEEALRVAAGKEQEARDVLGAFLFRGEEVDKPLAVLSGGERSRLALARL 456 + + L+ + ++ A A ++ + R VL F E + + LSGGE+ LA+A Sbjct: 96 IFKELTTEENLVSVAYAAGASRD-DIRSVLSYFPRLKERLGEKAGNLSGGEQQMLAIAMA 154 Query: 457 FFSGANLLILDEPT 470 LL+LDEP+ Sbjct: 155 LLYRPKLLMLDEPS 168 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 47.8 bits (112), Expect = 8e-07 Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 4 VVLEGVGARVGERVLFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRVVY 62 + LE V A G+ D+S + G+ +VGPNG+GKSTLL+ M G +GRV++ Sbjct: 6 IKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLF 64 Score = 47.4 bits (111), Expect = 1e-06 Identities = 44/162 (27%), Positives = 62/162 (38%), Gaps = 17/162 (10%) Query: 325 LVQTEGLGKAYGXXXXXXXXXXXXXXXXXXXIAGPNGAGKTTLLRILAGEDLAYTGTLRY 384 +++ E + YG I GPNGAGK+TLL+ + G Y G + + Sbjct: 5 IIKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLF 64 Query: 385 GTGVVPGYFAQDVA----------ERLSGPQTVLEEALRVAAGKEQE------ARDVLGA 428 V D A E + TV E LR+A E +V Sbjct: 65 ENTDVTHMPPHDRAKIGMTFIFQLENIFRELTVYEN-LRLAGYDLPEDVFRDRLEEVFSM 123 Query: 429 FLFRGEEVDKPLAVLSGGERSRLALARLFFSGANLLILDEPT 470 F E + + LSGGER LA+A + ++DEPT Sbjct: 124 FPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPT 165 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 47.8 bits (112), Expect = 8e-07 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 10/145 (6%) Query: 417 GKEQEARDVLGAFLFRGEEVDKPLAVLSGGERSRLALARLFFSGANLLILDEPTNHLDLH 476 G ++ +VL A E D+ LSGG+R R+A+AR +L+LDEPT+ LD+ Sbjct: 164 GVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIARALALNPKILVLDEPTSALDVS 223 Query: 477 TKDALCDALSSF--EGGIVF--VSHDAHFNRTLATRVLYLHEGTLREFPGPYDEF---LR 529 + + L + G+ + ++HD R +++ V+ ++ G + E + F L Sbjct: 224 IQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMYSGKIMESAPKHILFTNPLH 283 Query: 530 WWEETLIPSRRDTPHPSPPSRTESE 554 + + L+ + P P P SR E Sbjct: 284 PYTKLLLSA---VPIPDPRSRRIKE 305 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 47.4 bits (111), Expect = 1e-06 Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 5/90 (5%) Query: 443 LSGGERSRLALARLFFSGANLLILDEPTNHLD----LHTKDALCDALSSFEGGIVFVSHD 498 LSGG+R RL+LAR +L+LDEPT ++D + + ++ + ++ V+H Sbjct: 149 LSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKEEMATVIIVTHT 208 Query: 499 AHFNRTLATRVLYLHEGTLREFPGPYDEFL 528 ++ ++L+L+EG + E+ GP E + Sbjct: 209 PQQAARISDQILFLYEGRVIEY-GPTKELV 237 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 46.6 bits (109), Expect = 2e-06 Identities = 57/196 (29%), Positives = 78/196 (39%), Gaps = 31/196 (15%) Query: 356 IAGPNGAGKTTLLRI-------------LAGEDLAYTGTLRYGTGVVPGYFAQDVAERLS 402 + GPNGAGKTTL+++ L G D R G GV V ER + Sbjct: 35 LVGPNGAGKTTLIKVSLGLARRDGGRVLLNGLDPWREPRAREGVGV--------VFERPN 86 Query: 403 GPQTV-----LEEALRVAAGKEQEARDVLGAFLFRGEEVDKPLAVLSGGERSRLALARLF 457 P ++ LE A + + A G E K LS G + R A+A Sbjct: 87 LPSSMPVVEFLESAAAIIGSSPSRVDWAIRAAGLEGHEW-KTFPQLSAGLKQRAAIAHAL 145 Query: 458 FSGANLLILDEPTNHLD-LHTKDA--LCDALSSFEG-GIVFVSHDAHFNRTLATRVLYLH 513 L+ DEPT++LD L ++ L L+ G ++ SH +ATR+ L Sbjct: 146 LGEPRFLVADEPTSNLDPLERREVLRLLARLNREHGLSLLVSSHVIVELLRVATRIYVLA 205 Query: 514 EGTLREFPGPYDEFLR 529 G L P D F R Sbjct: 206 GGRLAAEGSPEDLFRR 221 Score = 42.7 bits (99), Expect = 3e-05 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 5/62 (8%) Query: 3 GVVLEGVGARVGERVLFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRVVY 62 GVV + G V +RV DL V G +VGPNG+GK+TL+++ GL D GRV+ Sbjct: 9 GVVKKYRGQPVLDRV---DLE--VGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLL 63 Query: 63 SG 64 +G Sbjct: 64 NG 65 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 46.2 bits (108), Expect = 2e-06 Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 38/197 (19%) Query: 356 IAGPNGAGKTTLLRILAGEDLAYTG----------------TLRYGT-------GVVPGY 392 + G NGAGKTTLL+ + G G +LR G V PG Sbjct: 36 LLGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPKGPGDSLRSGIYMASQNPPVYPGI 95 Query: 393 FA-QDVAERL--SGPQTVLEEALRVAAGKEQEARDVLGAFLFRGEEVDKPLAVLSGGERS 449 A +D+A L +G + L +A + A EA + LG + + D+ L + ER Sbjct: 96 KAYEDLAVTLMVAGRKAGLRQARTMLA----EASEALGLNI----DPDRYLGEMGFSERQ 147 Query: 450 RLALARLFFSGANLLILDEPTNHLDLHTKDALCDA---LSSFEGGIVFVSHDAHFNRTLA 506 RL + + G+ ++LDEPT HL + +A L++ ++ V+H A Sbjct: 148 RLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAASGAAVLLVTHRIGEAMEHA 207 Query: 507 TRVLYLHEGTLREFPGP 523 R++ L +G ++ + GP Sbjct: 208 DRLVILRKG-VKVYEGP 223 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 45.8 bits (107), Expect = 3e-06 Identities = 41/133 (30%), Positives = 57/133 (42%), Gaps = 20/133 (15%) Query: 356 IAGPNGAGKTTLLRILAGEDLAY--------TGTLRYGTGVVPGYFAQDVAERLSGPQTV 407 + G +GAGKTTLLR++ G+ L +G ++ T E G +T+ Sbjct: 471 VVGASGAGKTTLLRMILGKALGIGGEGYRPDSGVVKIPTNTKAAALLPGELEPSFGGETL 530 Query: 408 LEEALRVAAGKEQEARDVLG------AFLFRGEEVDKPLAVLSGGERSRLALARLFFSGA 461 LE + G A +VL A FR LS G++ R LA L Sbjct: 531 LEH-VASKLGDPGAAVEVLSSVGLGDAIFFRAS-----FGELSTGQKERAKLASLLAERP 584 Query: 462 NLLILDEPTNHLD 474 NLL++DE HLD Sbjct: 585 NLLVIDEFMAHLD 597 Score = 43.5 bits (101), Expect = 2e-05 Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 11/74 (14%) Query: 5 VLEGVGA--RVGERVLFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRVVY 62 VL GA RV ER + D++ TV G AAVVG +G+GK+TLLR++ G+ + Sbjct: 440 VLRAFGAERRVVERYVLKDVNITVNPGSVAAVVGASGAGKTTLLRMIL-------GKALG 492 Query: 63 SGGARVGYLPQWGI 76 GG GY P G+ Sbjct: 493 IGGE--GYRPDSGV 504 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 45.4 bits (106), Expect = 4e-06 Identities = 57/205 (27%), Positives = 84/205 (40%), Gaps = 37/205 (18%) Query: 356 IAGPNGAGKTTLL-----------RILAGEDLAYTGT---------LRYGTGVVPGYFAQ 395 I G +G+GK+TL RI+ G L Y+G LR G G Q Sbjct: 38 IVGESGSGKSTLALSIPRLIMPPGRIVGGRIL-YSGVDLLSLAGEELRRYRGREIGMVFQ 96 Query: 396 DVAERLSGPQTV--------LEEALRVAAGKEQE--ARDVLGAFLFRGEEVDKPLAVLSG 445 D L +TV LE L ++G E E A D L + LSG Sbjct: 97 DPTAYLDPYRTVGSQIAESLLEHGL-ASSGSEAESMAGDALELVGIPRDRASVYPHQLSG 155 Query: 446 GERSRLALARLFFSGANLLILDEPTNHLDLHTKDALCDALSSFEG----GIVFVSHDAHF 501 G+R R+A+A +LI DEPT LD+ + + D + + ++ V+HD Sbjct: 156 GQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGL 215 Query: 502 NRTLATRVLYLHEGTLREFPGPYDE 526 + R+ ++ G L E GP ++ Sbjct: 216 AAEYSDRIAVMYAGELVEI-GPAED 239 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 45.4 bits (106), Expect = 4e-06 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%) Query: 444 SGGERSRLALARLFFSGANLLILDEPTNHLDLHTK----DALCDALSSFEGGIVFVSHDA 499 SGG+R R+A+AR+ ++LDEPT+ LD+ + + L D + +F+SHD Sbjct: 176 SGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTYLFISHDL 235 Query: 500 HFNRTLATRVLYLHEGTLREF 520 R ++ + ++ G + EF Sbjct: 236 GVVRYMSDYIAVMYLGKIVEF 256 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 44.7 bits (104), Expect = 7e-06 Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 2/64 (3%) Query: 3 GVVLEGVGARVGERVLFTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAG--LREPDEGRV 60 G+ ++G+ A++GE+V+ + + ++ G AV+GPNGSGKS+L ++ G + E EG + Sbjct: 2 GLEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDI 61 Query: 61 VYSG 64 + G Sbjct: 62 LLDG 65 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 44.3 bits (103), Expect = 9e-06 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%) Query: 3 GVVLEGVGARVGERVL--FTDLSWTVQEGVRAAVVGPNGSGKSTLLRIMAGLREPDEGRV 60 G+V V R+ RV+ +S++V EG + +GPNG+GK+T +RI++ L +PD G Sbjct: 10 GLVKRFVSGRIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEA 69 Query: 61 VYSG 64 +G Sbjct: 70 RVAG 73 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 42.7 bits (99), Expect = 3e-05 Identities = 54/240 (22%), Positives = 94/240 (39%), Gaps = 38/240 (15%) Query: 356 IAGPNGAGKTTLLR----ILAGEDLAYTGT--LRYGTG------------------VVPG 391 I G +G GK+TL R IL + G+ L G+G + Sbjct: 40 IVGESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVS 99 Query: 392 YFAQDVAERLSGPQTVLEEALRVAAGK----EQEARDVLGAFLFRGEEV--DKPLAVLSG 445 QD + LS V ++ +G+ E+ A+++L + + +K LSG Sbjct: 100 MIFQDPSAALSPVHKVKKQVTDHVSGEKRRVEKIAQEILKKLMMPAPHMILEKYPHELSG 159 Query: 446 GERSRLALARLFFSGANLLILDEPTNHLDLHTKDALCDALS----SFEGGIVFVSHDAHF 501 G + R+ +A + ++I DEPT LD+ + + LS E I+ ++H+ Sbjct: 160 GMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKMLSRLREELETTIILITHNLAV 219 Query: 502 NRTLATRVLYLHEGTLREFPGPYDEFLRWWEETLIPSRRDTPHPSPPSRTESEAQRRRTE 561 +A R+ ++ G + E + F E L P + P + E + R E Sbjct: 220 AAEIADRIAVMYAGHVVEVADVFSLF----ERPLHPYTKGLLKSIPKPHVDEEIEPIRGE 275 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 41.6 bits (96), Expect = 6e-05 Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 16/162 (9%) Query: 325 LVQTEGLGKAYGXXXXXXXXXXXXXXXXXXXIAGPNGAGKTTLLRILAGEDLAYTGTLRY 384 L++ + + YG + G NGAGKTT L ++G G++ + Sbjct: 6 LLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIW 65 Query: 385 GTGVVPGYFA-QDVAERLSG--------PQTVLEEALRVAAGK-------EQEARDVLGA 428 + G A + V E +S P+ + E LRVAA + V Sbjct: 66 QGRDITGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRVAASTRRAKEHFQDSLEQVYTI 125 Query: 429 FLFRGEEVDKPLAVLSGGERSRLALARLFFSGANLLILDEPT 470 F + LSGGE+ LA+AR LL++DEP+ Sbjct: 126 FPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPS 167 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 629,442 Number of Sequences: 1700 Number of extensions: 27844 Number of successful extensions: 319 Number of sequences better than 1.0e-04: 39 Number of HSP's better than 0.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 21 Number of HSP's that attempted gapping in prelim test: 196 Number of HSP's gapped (non-prelim): 118 length of query: 646 length of database: 492,079 effective HSP length: 83 effective length of query: 563 effective length of database: 350,979 effective search space: 197601177 effective search space used: 197601177 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719602|ref|YP_003875134.1| hypothetical protein STHERM_c19260 [Spirochaeta thermophila DSM 6192] (256 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 280,426 Number of Sequences: 1700 Number of extensions: 12707 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 256 length of database: 492,079 effective HSP length: 75 effective length of query: 181 effective length of database: 364,579 effective search space: 65988799 effective search space used: 65988799 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719603|ref|YP_003875135.1| rhomboid-like protein [Spirochaeta thermophila DSM 6192] (187 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.143 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 167,763 Number of Sequences: 1700 Number of extensions: 6253 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 187 length of database: 492,079 effective HSP length: 72 effective length of query: 115 effective length of database: 369,679 effective search space: 42513085 effective search space used: 42513085 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719604|ref|YP_003875136.1| peptide chain release factor 1 [Spirochaeta thermophila DSM 6192] (357 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.132 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 299,115 Number of Sequences: 1700 Number of extensions: 11082 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 357 length of database: 492,079 effective HSP length: 78 effective length of query: 279 effective length of database: 359,479 effective search space: 100294641 effective search space used: 100294641 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719605|ref|YP_003875137.1| hypothetical protein STHERM_c19290 [Spirochaeta thermophila DSM 6192] (282 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 295,408 Number of Sequences: 1700 Number of extensions: 13550 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 0 length of query: 282 length of database: 492,079 effective HSP length: 76 effective length of query: 206 effective length of database: 362,879 effective search space: 74753074 effective search space used: 74753074 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719606|ref|YP_003875138.1| GTP pyrophosphokinase [Spirochaeta thermophila DSM 6192] (662 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 629,161 Number of Sequences: 1700 Number of extensions: 27769 Number of successful extensions: 85 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85 Number of HSP's gapped (non-prelim): 0 length of query: 662 length of database: 492,079 effective HSP length: 83 effective length of query: 579 effective length of database: 350,979 effective search space: 203216841 effective search space used: 203216841 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719607|ref|YP_003875139.1| thiol peroxidase [Spirochaeta thermophila DSM 6192] (165 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600438|ref|NP_146952.1| thiol peroxidase [Aeropyrum pernix K1] 42 6e-06 gi|118431740|ref|NP_148402.2| thiol peroxidase [Aeropyrum pernix... 39 9e-05 >gi|14600438|ref|NP_146952.1| thiol peroxidase [Aeropyrum pernix K1] Length = 163 Score = 42.4 bits (98), Expect = 6e-06 Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 4/110 (3%) Query: 17 LPAPGQKAPDFXXXXXXXXXXXXADFRGKKKILNIVPSLDTGVCATSAKRFNEKVR--GR 74 +P G++APDF +DFRG+ +L P T C RFNE + + Sbjct: 1 MPGVGEQAPDFEGIAHTGEKIRLSDFRGRIVVLYFYPRAMTPGCTREGVRFNELLDEFEK 60 Query: 75 ADLVVLTISCDLPFAQDRFCKAEGIDNVITLSQLRNKEFGKAYGVEIADG 124 VV+ +S D +F + G L E G YGV +G Sbjct: 61 LGAVVIGVSTDSVEKNRKFAEKHGFR--FKLVSDEKGEIGMKYGVVRGEG 108 >gi|118431740|ref|NP_148402.2| thiol peroxidase [Aeropyrum pernix K1] Length = 161 Score = 38.5 bits (88), Expect = 9e-05 Identities = 39/148 (26%), Positives = 57/148 (38%), Gaps = 7/148 (4%) Query: 21 GQKAPDFXXXXXXXXXXXXADF--RGKKKILNIVPSLDTGVCATSAKRFNEKVRG--RAD 76 G+KAPDF + RG+ +L P+ + VC F +K+ +A+ Sbjct: 5 GEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN 64 Query: 77 LVVLTISCDLPFAQDRFCKAEGIDNVITLSQLRNKEFGKAYGVEIADGPXXXXXXXXXXX 136 VL IS D P+ +F + L N+E K Y V D Sbjct: 65 AEVLAISVDSPWCLKKFKDENRL--AFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVF 122 Query: 137 XNEHD-TVVYTELVPEITREPNYDEALR 163 + D TV Y + EP+YDE +R Sbjct: 123 IVKPDGTVAYKWVTDNPLNEPDYDEVVR 150 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 133,011 Number of Sequences: 1700 Number of extensions: 4255 Number of successful extensions: 4 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 2 length of query: 165 length of database: 492,079 effective HSP length: 70 effective length of query: 95 effective length of database: 373,079 effective search space: 35442505 effective search space used: 35442505 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719608|ref|YP_003875140.1| transporter [Spirochaeta thermophila DSM 6192] (409 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 349,019 Number of Sequences: 1700 Number of extensions: 14326 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 0 length of query: 409 length of database: 492,079 effective HSP length: 79 effective length of query: 330 effective length of database: 357,779 effective search space: 118067070 effective search space used: 118067070 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719609|ref|YP_003875141.1| ABC transporter permease [Spirochaeta thermophila DSM 6192] (406 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.143 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 375,481 Number of Sequences: 1700 Number of extensions: 16104 Number of successful extensions: 72 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72 Number of HSP's gapped (non-prelim): 0 length of query: 406 length of database: 492,079 effective HSP length: 79 effective length of query: 327 effective length of database: 357,779 effective search space: 116993733 effective search space used: 116993733 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719610|ref|YP_003875142.1| transporter [Spirochaeta thermophila DSM 6192] (263 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 167 2e-43 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 141 2e-35 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 129 6e-32 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 128 2e-31 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 117 3e-28 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 112 1e-26 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 111 2e-26 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 109 8e-26 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 106 7e-25 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 103 3e-24 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 96 9e-22 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 94 4e-21 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 94 5e-21 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 92 1e-20 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 91 2e-20 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 85 2e-18 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 84 5e-18 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 81 3e-17 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 80 4e-17 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 80 7e-17 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 78 3e-16 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 77 4e-16 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 76 8e-16 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 74 3e-15 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 74 3e-15 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 74 4e-15 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 74 4e-15 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 74 5e-15 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 74 5e-15 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 73 8e-15 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 70 7e-14 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 67 4e-13 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 66 1e-12 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 64 3e-12 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 62 1e-11 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 61 3e-11 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 60 7e-11 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 52 2e-08 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 47 6e-07 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 167 bits (424), Expect = 2e-43 Identities = 97/253 (38%), Positives = 143/253 (56%), Gaps = 11/253 (4%) Query: 3 DEVIRLEGVTKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPT 62 D + +EGV K Y + ALR + L+V R E +AIMG SGSGK+TL+NI+ +DRP Sbjct: 8 DLAVVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPN 67 Query: 63 SGTYYLEGEDVSTLTDDQLADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYAGIPXXXX 122 +G ++G +VS+ ++L R +VG+VFQ NL+P +TAL+N+ LP+ AG Sbjct: 68 AGRVIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIPTLTALENILLPMALAG---KAN 124 Query: 123 XXXXXXXXXXVDLADRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGL 182 V L + P ELSGG++QR+A+A AL +P II+ADEPTG LD TG Sbjct: 125 RLRGQELLRRVGLGGKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGE 184 Query: 183 SIM-ALFQQLHREGATILMVTHEMDIALHAERIVYLRDGLIRGDERVQRRKVAEEELARV 241 I+ L ++ H G T+++ TH+ +A A+R+ + DG +RG + +A Sbjct: 185 RIVRILLEEAHSRGKTVVLTTHDPRVARMADRVAVIEDGRLRG-------VYSPSRIAGA 237 Query: 242 ANLDEEELSSAIE 254 E E A+E Sbjct: 238 TGFGEVEAEKAVE 250 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 141 bits (355), Expect = 2e-35 Identities = 87/241 (36%), Positives = 135/241 (56%), Gaps = 17/241 (7%) Query: 2 MDEVIRLEGVTKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRP 61 M ++ + G+ +Y+ GE + L+G+ +++ E + IMG SGSGKSTL+ + L P Sbjct: 1 MARLLEVRGLVVSYS-GE---KVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEP 56 Query: 62 TSGTYYLEGEDVSTLTDDQLADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYA-GIPXX 120 SG+ G DV+ L+ QL VR RK+G++ Q+++L P MT L+N+ PL A G+ Sbjct: 57 DSGSIVFRGVDVTRLSGSQLRMVR-RKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRR 115 Query: 121 XXXXXXXXXXXXVDLADRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRT 180 + + D H P LSGGQ+QR A+ARAL +EP I+L DEPT LD + Sbjct: 116 DAEERAVKYLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPES 175 Query: 181 GLSIMALFQQLHREGATILMVTHEMDIALH-AERIVYLRDG----------LIRGDERVQ 229 ++ ++ G +++VTHE D A+ A+R+ ++ DG L+ G ERV+ Sbjct: 176 RADVLEALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSELVEGSERVR 235 Query: 230 R 230 R Sbjct: 236 R 236 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 129 bits (325), Expect = 6e-32 Identities = 76/220 (34%), Positives = 122/220 (55%), Gaps = 12/220 (5%) Query: 6 IRLEGVTKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGT 65 +RLEG+ K + + AL+GI L ++ E V ++G SG GK+T + IV L+RP +G Sbjct: 4 VRLEGIVKRFG----KTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGR 59 Query: 66 YYLEGEDVSTLTDDQLADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYAGIPXXXXXXX 125 Y +G DV+ L + R V VFQ++ L P M N+ PL +P Sbjct: 60 VYFDGRDVTGLPP------KDRNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRR 113 Query: 126 XXXXXXXVDLADRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSIM 185 +++ + P++LSGGQ+QRVA+ARA+V EP ++L DEP NLD+ + + Sbjct: 114 VRWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMR 173 Query: 186 ALFQQLHRE-GATILMVTH-EMDIALHAERIVYLRDGLIR 223 + ++L R G T++ VTH +++ + +RIV + G I+ Sbjct: 174 SEIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQ 213 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 128 bits (321), Expect = 2e-31 Identities = 78/220 (35%), Positives = 120/220 (54%), Gaps = 12/220 (5%) Query: 6 IRLEGVTKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGT 65 ++LEGV K + V A+R + L + EFV+I+G SGSGK+TL+ ++ + +P+ G Sbjct: 4 VKLEGVWKVFG----NVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGR 59 Query: 66 YYLEGEDVSTLTDDQLADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYAGIPXXXXXXX 125 Y DV+ L ++ R +G VFQ + L P MT +N+ PL Sbjct: 60 IYFNDVDVTDLPPNK------RNIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEK 113 Query: 126 XXXXXXXVDLADRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSIM 185 + + + P +LSGGQ+QRVA+ARALV EP ++L DEP NLD+ + I Sbjct: 114 VLSVAKLLGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIR 173 Query: 186 ALFQQLHRE-GATILMVTHEMDIAL-HAERIVYLRDGLIR 223 + ++L +E G T + VTH+ AL A+RI + G+I+ Sbjct: 174 SELKKLQKELGITAIYVTHDQSEALAMADRIAIIASGVIQ 213 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 117 bits (293), Expect = 3e-28 Identities = 81/244 (33%), Positives = 124/244 (50%), Gaps = 21/244 (8%) Query: 6 IRLEGVTKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGT 65 +RL+ V +Y EV+ALRG+ + + A++G SG GK+T++ ++ L +P G Sbjct: 6 VRLDNVHASYG----EVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGR 61 Query: 66 YYLEGEDVSTLTDDQLADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYAGIPXXXXXXX 125 + G D + L ++ R VGFVFQ L P MT NV L G Sbjct: 62 VFFGGVDYTGLPPER------RSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQ 115 Query: 126 XXXXXXXVDLA---DRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGL 182 V L + M R LSGGQ+QRVA+ARA+ EP ++L DEP +LD + Sbjct: 116 VEWALETVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQ 175 Query: 183 SIMALFQQLHRE-GATILMVTHEMDIALH-AERIVYLRDGLIRGDERVQRRKVAEEELAR 240 ++A ++L R+ G+T++ VTH+ A+ A+ +V +RDG R+ + E R Sbjct: 176 RLLAELKRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDG------RIVQHGTPSEVYTR 229 Query: 241 VANL 244 AN+ Sbjct: 230 PANV 233 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 112 bits (280), Expect = 1e-26 Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 16/223 (7%) Query: 6 IRLEGVTKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGT 65 IRLEGV K + +V A+ + L+++ EF ++G SG GK+T + ++ L+ P G Sbjct: 4 IRLEGVVKRFG----KVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGR 59 Query: 66 YYLEGEDVSTLTDDQLADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYA----GIPXXX 121 ++GEDV+ D + R V VFQ + L P M+ N+ L G+ Sbjct: 60 ILIDGEDVT------FKDPKDRNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDD 113 Query: 122 XXXXXXXXXXXVDLADRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTG 181 + + D + +P +LSGGQ+QRVA+ARALV P + L DEP NLD+ Sbjct: 114 IRRRVIEVAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLR 173 Query: 182 LSIMALFQQLHRE-GATILMVTHEMDIALH-AERIVYLRDGLI 222 L++ A ++L ++ T + VTH+ A+ A+RI + G + Sbjct: 174 LAMRAELKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRV 216 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 111 bits (277), Expect = 2e-26 Identities = 79/218 (36%), Positives = 120/218 (55%), Gaps = 14/218 (6%) Query: 15 YTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRP----TSGTYYLEG 70 YT+ + V+A+ G+ L+V + E+++I+G SGSGKSTL + L P G G Sbjct: 14 YTLTGI-VRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRILYSG 72 Query: 71 EDVSTLTDDQLADVRGRKVGFVFQ--TFNLLPRMTALKNVELPLVYAGIPXXXXXXXXXX 128 D+ +L ++L RGR++G VFQ T L P T + L+ G+ Sbjct: 73 VDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGL-ASSGSEAESM 131 Query: 129 XXXXVDLA----DRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSI 184 ++L DR P++LSGGQRQRVAIA A+ +EP I++ADEPT LD I Sbjct: 132 AGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKI 191 Query: 185 MALFQQLHRE-GATILMVTHEMDIAL-HAERIVYLRDG 220 M L ++L E G T+++VTH++ +A +++RI + G Sbjct: 192 MDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAG 229 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 109 bits (272), Expect = 8e-26 Identities = 69/219 (31%), Positives = 106/219 (48%), Gaps = 12/219 (5%) Query: 6 IRLEGVTKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGT 65 IRLE VTK + AL + L + E ++G SG GK+T + ++ + P G Sbjct: 4 IRLESVTKRFG----NTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGR 59 Query: 66 YYLEGEDVSTLTDDQLADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYAGIPXXXXXXX 125 Y+ DV+ L + R VFQ + L P M N+ L +P Sbjct: 60 VYIGSRDVTMLKPYE------RNTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRR 113 Query: 126 XXXXXXXVDLADRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSIM 185 +++ + P++LSGGQ+QRVA+ARA+V EP ++L DEP NLD+ L + Sbjct: 114 VRWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMR 173 Query: 186 ALFQQLH-REGATILMVTHEMDIALH-AERIVYLRDGLI 222 +L R G TI+ VTH+ + AL + R+ + G + Sbjct: 174 EEIVRLQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRV 212 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 106 bits (264), Expect = 7e-25 Identities = 81/211 (38%), Positives = 112/211 (53%), Gaps = 13/211 (6%) Query: 22 VQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGTYYLEGEDVSTLTDDQL 81 V+A+ G+ L +R E +AI+G SG GK+TL + ++ P+ G Y GE LT +L Sbjct: 35 VRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGE---LLTPHRL 91 Query: 82 ADVRG--RKVGFVFQT--FNLLPRMTALKNVELPLVYAGIPXXXXXXXXXXXXX-XVDLA 136 A R RK+ VFQ +L P M V PLV G+ V L Sbjct: 92 ARDRRLRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETVGLT 151 Query: 137 DRMH---HRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSIMALFQQLHR 193 +P++LSGGQRQRVAIAR LV+EP +I+ADEP +D SI+ L HR Sbjct: 152 PGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHR 211 Query: 194 E-GATILMVTHEMDIA-LHAERIVYLRDGLI 222 GATI+++TH++ +A A+RI + G I Sbjct: 212 RTGATIVLITHDIAVARAVADRIAVMYLGKI 242 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 103 bits (258), Expect = 3e-24 Identities = 85/234 (36%), Positives = 132/234 (56%), Gaps = 13/234 (5%) Query: 1 MMDEVIRLEGV-TKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLM-NIVGCL 58 M E++ +E + T YT+ + V+A+ G+ T+RR E + I G SGSGKSTL +I+G + Sbjct: 1 MAQELLVVEDLKTYFYTLRGI-VKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLV 59 Query: 59 DRP---TSGTYYLEGEDVSTLTDDQLA-DVRGRKVGFVFQ-TFNLL-PRMTALKNVELPL 112 P G ++G DV+++++ +L VR +KV VFQ N+L P T + +E L Sbjct: 60 PPPGRIVGGRIMIDGMDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVL 119 Query: 113 -VYAGIPXXXXXXXXXXXXXXVDLADRMHHR-PNELSGGQRQRVAIARALVVEPAIILAD 170 ++ G+ V L + R P+ELSGGQ+QRV IA AL +EP I++AD Sbjct: 120 QIHRGVGRHEARQRVYELLESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIAD 179 Query: 171 EPTGNLDSRTGLSIMALFQQLHRE-GATILMVTHEMD-IALHAERIVYLRDGLI 222 EPT LD I+ L ++L E +I+++TH++ IA AE ++ + G I Sbjct: 180 EPTTALDVVVQAQILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGKI 233 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 95.9 bits (237), Expect = 9e-22 Identities = 61/190 (32%), Positives = 98/190 (51%), Gaps = 5/190 (2%) Query: 22 VQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGTYYLEGEDVSTLTDDQL 81 V+A+ + + + R + + ++G SGSGK+T ++ L+ PT G + +G DV L L Sbjct: 49 VKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGL 108 Query: 82 ADVRGRKVGFVFQT--FNLLPRMTALKNVELPLVYAGIPXXXXXXXXXXXXXXVDLAD-R 138 + R R+ +FQ +L PR T + P+ GI V L + Sbjct: 109 KEFR-RRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQVGLNETH 167 Query: 139 MHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSIMALFQQLHRE-GAT 197 ++ P+E SGGQRQR+AIAR L ++P I+ DEPT LD I+ L + L R+ T Sbjct: 168 LYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSLT 227 Query: 198 ILMVTHEMDI 207 L ++H++ + Sbjct: 228 YLFISHDLGV 237 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 94.0 bits (232), Expect = 4e-21 Identities = 76/266 (28%), Positives = 125/266 (46%), Gaps = 14/266 (5%) Query: 2 MDEVIRLEGVTKTYTMGEVE-----VQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVG 56 M + E + K Y MG + ++AL G+ L V R +++G +G+GK+TL+ I+ Sbjct: 1 MGYAVEAEALVKEYRMGLLPWRARTIRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILS 60 Query: 57 CLDRPTSGTYYLEGEDVSTLTDDQLADVRGRKVGFVFQTFNLLP-RMTALKNVELPLVYA 115 L P SG + G DV + +VR R +G V L R++ N+ Sbjct: 61 TLLLPDSGWARVAGFDVVR----EANNVRSR-IGVVLGGERALYWRLSGWDNLWFFSQLY 115 Query: 116 GIPXXXXXXXXXXXXXXVDLADRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGN 175 GIP V L + H R S G +QR+ IAR L+ +P ++L DEPT Sbjct: 116 GIPPREAKRRVKELLEIVGLEEWAHVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIG 175 Query: 176 LDSRTGLSIMALFQQLHREGATILMVTHEMDIALH-AERIVYLRDGLI--RGDERVQRRK 232 LD + + ++ +++ REG T+L+ TH M A ++R+ + G I G + Sbjct: 176 LDPKAAREVRSIIRRIVREGRTVLLTTHYMVEAEELSDRVAIISKGRIVAEGPPEDLKSL 235 Query: 233 VAEEELARVANLDEEELSSAIEKHGG 258 V E + + + + +S +E+ GG Sbjct: 236 VGGESVIELKVMGGDRVSMLLERLGG 261 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 93.6 bits (231), Expect = 5e-21 Identities = 68/210 (32%), Positives = 112/210 (53%), Gaps = 15/210 (7%) Query: 25 LRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGTYYLEGE----DVSTLTDDQ 80 L+GI + AIMG SGSGKSTL+ ++ L G +EGE +++ + +D Sbjct: 21 LKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGAR-VEGEVWINNMNVMKEDP 79 Query: 81 LADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYAGIPXXXXXXXXXXXXXXV------D 134 ++R R G VFQ N P MT +NV + G+ + Sbjct: 80 Y-NIR-RYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEIVEWALKMAHLWDE 137 Query: 135 LADRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSI-MALFQQLHR 193 + DR+ P++LSGGQRQR+++ARAL ++P ++L DEPT N+D + + I ++ + Sbjct: 138 VKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKE 197 Query: 194 EGATILMVTH-EMDIALHAERIVYLRDGLI 222 E AT+++VTH A +++I++L +G + Sbjct: 198 EMATVIIVTHTPQQAARISDQILFLYEGRV 227 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 92.4 bits (228), Expect = 1e-20 Identities = 64/220 (29%), Positives = 105/220 (47%), Gaps = 12/220 (5%) Query: 23 QALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGTYYLEGEDVSTLTDDQLA 82 +A+ G+ + R E +++G +G+GK+T + ++ L RPTSG ++ G + + Sbjct: 20 RAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWIAGYSIVR----EPG 75 Query: 83 DVRGRKVGFVFQTFNLLPRMTALKNVELPLVYAGIPXXXXXXXXXXXXXXVDLADRMHHR 142 +VR R +G V Q M+ NV + G+P +DL + H R Sbjct: 76 NVR-RVIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEARERTREVLDYLDLMEAAHRR 134 Query: 143 PNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSIMALFQQLHREGATILMVT 202 SGG R+++ IA +LV P ++ DEPT LD + S+ + L R TIL+ T Sbjct: 135 VATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLKRSAVTILLTT 194 Query: 203 HEMDIA-LHAERIVYLRDGLIRGDERVQRRKVAEEELARV 241 H M+ A + ++R+ + G R+ EE ARV Sbjct: 195 HYMEEAEMLSDRVAIIDRG------RIVAEGTPEELKARV 228 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 91.3 bits (225), Expect = 2e-20 Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 10/238 (4%) Query: 6 IRLEGVTKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGT 65 + + G+ K Y G V+AL + T+R E A++G +G+GK+TLM I+ +PT G Sbjct: 13 VAMRGIVKVYPDG---VKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGE 69 Query: 66 YYLEGEDVSTLTDDQLADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYAGIPXXXXXXX 125 Y+ G VS D + V+Q F L+ MT +N+ + L G+ Sbjct: 70 IYVWGRKVSWRGP---WDAIRNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRR 126 Query: 126 XXXXXXXVDLADRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSIM 185 + L + +L G RQRV I +AL +++ DEPT NL + Sbjct: 127 TLETAERLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLF 186 Query: 186 ALFQQLHREGATILMVTHEM-DIALHAERIVYLRDGLIRG-DERVQRRKVAEEELARV 241 + + L G +++ +TH++ ++ A+R+ LR G + E V R +EEELAR+ Sbjct: 187 STLRLLKDMGVSVVYITHKLGEVVRVADRVTVLRRGRVSAVIEDVGR--TSEEELARL 242 Score = 59.7 bits (143), Expect = 7e-11 Identities = 61/237 (25%), Positives = 107/237 (45%), Gaps = 39/237 (16%) Query: 22 VQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGTYYLEGEDVSTLTD--- 78 V+ +R + L VR E V I G +G+G+ L++ + L RP G+ ++G + D Sbjct: 275 VERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEVQGRRIEGSLDFYR 334 Query: 79 ---DQLADVRGR----------KVGFVFQTFN--LLPRMTALKNVELPLVYAGIPXXXXX 123 +A RG+ + F++ T + LL R + L+++ LV Sbjct: 335 AGGGYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRRSRLEDLFRRLV---------- 384 Query: 124 XXXXXXXXXVDLADRMHHRP-NELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGL 182 L R P LSGG +Q+V + ++ +++A PT LD T Sbjct: 385 -------ERFRLVARSPWTPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTS 437 Query: 183 SIMALFQQLHREGATILMVTHEMDIALH-AERIVYLRDGLIRGDERVQRRKVAEEEL 238 + L +L R+GA IL+V+ ++D L ++RI + G + G ++R + E+L Sbjct: 438 FVRNLLSELARQGAGILLVSTDLDEILELSDRIYVMSGGRVTG--VLERSQATPEKL 492 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 85.1 bits (209), Expect = 2e-18 Identities = 72/235 (30%), Positives = 112/235 (47%), Gaps = 17/235 (7%) Query: 1 MMDEVIRLEGVTKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDR 60 M + V+ + +T Y + V AL G+ L V + E +AI+G SG GKSTL + + Sbjct: 1 MSEIVLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILP 60 Query: 61 PTS----GTYYLE-----GEDVSTLTDDQLADVRGRKVGFVFQ--TFNLLPRMTALKNVE 109 + G+ L D+ L++D+L +RG+ V +FQ + L P K V Sbjct: 61 SNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVT 120 Query: 110 LPLVYAGIPXXXXXXXXXXXXXXVDLADRM--HHRPNELSGGQRQRVAIARALVVEPAII 167 + +G + A M P+ELSGG +QR+ IA +L+ P II Sbjct: 121 DHV--SGEKRRVEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRII 178 Query: 168 LADEPTGNLDSRTGLSIMALFQQLHRE-GATILMVTHEMDIALH-AERIVYLRDG 220 +ADEPT LD I+ + +L E TI+++TH + +A A+RI + G Sbjct: 179 IADEPTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAG 233 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 83.6 bits (205), Expect = 5e-18 Identities = 85/289 (29%), Positives = 134/289 (46%), Gaps = 41/289 (14%) Query: 4 EVIRLE----------GVTKTYTMGEVE-VQALRGIWLTVRRNEFVAIMGASGSGKSTLM 52 EV+R+E +T+ TM V+A+ G+ ++ R E ++G SG GK+T Sbjct: 18 EVLRVEDLRVWFPLRRSITELITMKPQRFVKAVDGVSFSIARGEVFCLVGESGCGKTTTG 77 Query: 53 NIVGCLDRPTSGTYY----------LEGEDVSTLTD---DQLADVRG------RKVGFVF 93 + L + T G + LE V +L D D LA R R++ V+ Sbjct: 78 KAILRLVKATGGRVFFKPKKEVLEELERRGVKSLGDGFVDLLAVPRRKFKPLRRELQIVY 137 Query: 94 QT--FNLLPRMTALKNVELPLVYAGIPXXXXXXXXXX----XXXXVDLADRMHHRPNELS 147 Q +L PR T + +E PL+ I +D M P++LS Sbjct: 138 QDPYGSLNPRFTIKRILEDPLLIHSIGNAREREEMVARMLEAVKLTPASDFMDRYPHQLS 197 Query: 148 GGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSIMALFQQLHRE-GATILMVTHEMD 206 GGQRQRVAIARA ++ P++++ADEP LD I+ L + G ++L +TH++ Sbjct: 198 GGQRQRVAIARAFILNPSLVVADEPVSMLDVSIRAEILELLLGFREKLGTSLLFITHDLA 257 Query: 207 IALH-AERI--VYLRDGLIRGD-ERVQRRKVAEEELARVANLDEEELSS 251 +A + +RI +YL + GD R+ R + A VA + E + S+ Sbjct: 258 VARYICDRIAVMYLGKIVETGDARRIIERPIHPYTKALVAAIPEPDPSN 306 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 80.9 bits (198), Expect = 3e-17 Identities = 74/242 (30%), Positives = 112/242 (46%), Gaps = 41/242 (16%) Query: 22 VQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGTYYLE------------ 69 V+A+ G+ L++++ E + ++G SGSGK+TL + L RP +G +++ Sbjct: 27 VKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELEEAVSI 86 Query: 70 ------GEDVST----------LTDDQLADVRG------RKVGFVFQT--FNLLPRMTAL 105 GE+V T D R RKV V Q +L PRM Sbjct: 87 YEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMKVG 146 Query: 106 KNVELPLVYAGIPXXXXXXXXXXXXX--XVDLADRMHHR-PNELSGGQRQRVAIARALVV 162 + + P+ GI V L R P ELSGGQRQRVAIARAL + Sbjct: 147 EIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIARALAL 206 Query: 163 EPAIILADEPTGNLDSRTGLSIMALFQQLHRE-GATILMVTHEMDIALH-AERIVYLRDG 220 P I++ DEPT LD I+ L ++L ++ G T L++TH++ + + + +V + G Sbjct: 207 NPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMYSG 266 Query: 221 LI 222 I Sbjct: 267 KI 268 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 80.5 bits (197), Expect = 4e-17 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 5/204 (2%) Query: 21 EVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGTYYLEGEDVSTLTDDQ 80 E QAL G+ L V + E VA++G +G+GK+T + + L +P +G+ +G D++ L + Sbjct: 18 EFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIWQGRDITGLPAFK 77 Query: 81 LADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYAGIPXXXXXXXXXXXXXXVDLADRMH 140 + + V + + PR+T +N+ + L R Sbjct: 78 RVE---EGISHVPEGRGIFPRLTVYENLRVAASTRRAKEHFQDSLEQVYTIFPILKARRS 134 Query: 141 HRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSIMALFQQLHRE-GATIL 199 LSGG++Q +AIARAL+ P +++ DEP+ L + ++ L +L E G TIL Sbjct: 135 QLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLASRLREELGVTIL 194 Query: 200 MVTHEMDIALH-AERIVYLRDGLI 222 +V + ++L A+R + G I Sbjct: 195 LVEQNVGLSLKVADRGYVMETGRI 218 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 79.7 bits (195), Expect = 7e-17 Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 6/201 (2%) Query: 22 VQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGTYYLEGEDVSTLTDDQL 81 ++AL+G+ +VRR E V ++G +G+GK+TL NI+ + P G +G D++ Sbjct: 17 IEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYKGVDITGWP---- 72 Query: 82 ADVRGRK-VGFVFQTFNLLPRMTALKNVELPLVYAGIPXXXXXXXXXXXXXXVDLADRMH 140 A R R + FQ L +T L NV + + V LA + Sbjct: 73 AYRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAMEAIDMVGLAGKED 132 Query: 141 HRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSIMALFQQLHREGATILM 200 +L+ +++R+ +ARAL +P ++L DE L R ++ ++ + G TI+M Sbjct: 133 ILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLEISKRGITIIM 192 Query: 201 VTHEMDIALH-AERIVYLRDG 220 V H M ++ AER++ L G Sbjct: 193 VEHVMRAVMNFAERVIVLHFG 213 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 77.8 bits (190), Expect = 3e-16 Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 15/241 (6%) Query: 1 MMDEVIRLEGVTKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDR 60 M D +I+LE V+ Y ++Q L + L + R I+G +G+GKSTL+ + Sbjct: 1 MGDWIIKLEDVSAGYG----KLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTT 56 Query: 61 PTSGTYYLEGEDVSTLTDDQLADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYAGIPXX 120 G E DV+ + A + + F+FQ N+ +T +N+ L Y Sbjct: 57 VYKGRVLFENTDVTHMPPHDRAKIG---MTFIFQLENIFRELTVYENLRLA-GYDLPEDV 112 Query: 121 XXXXXXXXXXXXVDLADRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRT 180 L +R+ + LSGG+RQ +A+A ++ +P + L DEPT L + Sbjct: 113 FRDRLEEVFSMFPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKL 172 Query: 181 GLSIMALFQQLHREGATILMVTHEMDIALH-AERIVYLRDGLIRGDERVQRRKVAEEELA 239 +++ + L++EG T+++V + +L ++ V + +G I D AEE LA Sbjct: 173 AKEVLSYVRILNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFD------GPAEELLA 226 Query: 240 R 240 R Sbjct: 227 R 227 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 77.0 bits (188), Expect = 4e-16 Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 12/202 (5%) Query: 22 VQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCL-----DRPTSGTYYLEGEDVSTL 76 + ++ + L+V + ++G +G+GK+TL+ V + R T G+ LEGED++ Sbjct: 18 ILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNR 77 Query: 77 TDDQLADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYAGIPXXXXXXXXXXXXXXVDLA 136 D++A R V +V + + +T +N+ AG L Sbjct: 78 EPDEIAR---RGVIYVMEGRRIFKELTTEENLVSVAYAAG---ASRDDIRSVLSYFPRLK 131 Query: 137 DRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSIMALFQQLHR-EG 195 +R+ + LSGG++Q +AIA AL+ P +++ DEP+ L + I A + LHR EG Sbjct: 132 ERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHREEG 191 Query: 196 ATILMVTHEMDIALHAERIVYL 217 TIL+ AL Y+ Sbjct: 192 LTILLAEQNARKALEISDYGYV 213 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 76.3 bits (186), Expect = 8e-16 Identities = 68/221 (30%), Positives = 99/221 (44%), Gaps = 17/221 (7%) Query: 2 MDEVIRLEGVTKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRP 61 MD V+ GV K Y V L + L V R E V ++G +G+GK+TL+ + L R Sbjct: 1 MDTVLEARGVVKKYRGQPV----LDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARR 56 Query: 62 TSGTYYLEGEDVSTLTDDQLADVRGRK-VGFVFQTFNLLPRMTALKNVELPLVYAGIPXX 120 G L G D + R R+ VG VF+ NL M ++ +E G Sbjct: 57 DGGRVLLNGLD-------PWREPRAREGVGVVFERPNLPSSMPVVEFLESAAAIIG---- 105 Query: 121 XXXXXXXXXXXXVDLADRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRT 180 L +LS G +QR AIA AL+ EP ++ADEPT NLD Sbjct: 106 SSPSRVDWAIRAAGLEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLE 165 Query: 181 GLSIMALFQQLHRE-GATILMVTHEMDIALHAERIVYLRDG 220 ++ L +L+RE G ++L+ +H + L +Y+ G Sbjct: 166 RREVLRLLARLNREHGLSLLVSSHVIVELLRVATRIYVLAG 206 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 74.3 bits (181), Expect = 3e-15 Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 9/210 (4%) Query: 1 MMDEVIRLEGVTKTYTMGEVE---VQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGC 57 M +I G+ K + G + V+AL+G+ +V E + +G +G+GK+T + I+ Sbjct: 1 MAGAMIEARGLVKRFVSGRIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILST 60 Query: 58 LDRPTSGTYYLEGEDVSTLTDDQLADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYAGI 117 L P G + G DV + +VR R + ++T +N+ GI Sbjct: 61 LLDPDGGEARVAGFDVVK----ERWEVRKRIGVMLSVERGFYWKLTGRENLYYFGRIYGI 116 Query: 118 PXXXXXXXXXXXXXXVDLADRMH-HRP-NELSGGQRQRVAIARALVVEPAIILADEPTGN 175 P V L D +P E+S G + R+ +AR L+ +P +++ DEPT Sbjct: 117 PQGELKSRIKEVLDLVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLG 176 Query: 176 LDSRTGLSIMALFQQLHREGATILMVTHEM 205 LD + +I + + L EG TI + TH M Sbjct: 177 LDPASARTIRGVIRSLASEGRTIFITTHNM 206 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 74.3 bits (181), Expect = 3e-15 Identities = 64/241 (26%), Positives = 106/241 (43%), Gaps = 24/241 (9%) Query: 3 DEVIRLEGVTKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKST----LMNIVGCL 58 D +I +E + + V+A+ + + R E ++G +G GKS L ++ Sbjct: 7 DPIIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPP 66 Query: 59 DRPTSGTYYLEGE-----DVSTLTDDQLADVRGRKVGFVFQ----------TFNLLPRMT 103 R G Y E D+ +L + +L +RG ++ ++FQ T T Sbjct: 67 GRIVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGET 126 Query: 104 ALKNVELPLVYAGIPXXXXXXXXXXXXXXVDLADRMHHRPNELSGGQRQRVAIARALVVE 163 L + + + G+ D R+ P+ELSGG +QR I +L Sbjct: 127 MLAHGRVRSLREGV---RRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNR 183 Query: 164 PAIILADEPTGNLDSRTGLSIMALFQQLHRE-GATILMVTHEMD-IALHAERIVYLRDGL 221 P +++ADEPT LD IM L QL RE G T+L++TH + +A + +R+ + G Sbjct: 184 PKLLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGN 243 Query: 222 I 222 I Sbjct: 244 I 244 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 73.9 bits (180), Expect = 4e-15 Identities = 61/250 (24%), Positives = 112/250 (44%), Gaps = 29/250 (11%) Query: 12 TKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGTYYLEGE 71 T+ T+ V AL + + VRR E + I+G +G+GK++L+N++ + +P G Y +G Sbjct: 4 TENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGR 63 Query: 72 DVSTLTDDQLADVRGRKVGFVFQTFNLLPRMTALKNVELPL------------VYAGIPX 119 D++ L Q + + FQ L MT L+N+ + L ++A Sbjct: 64 DITGLKPHQRITL---GLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAK 120 Query: 120 XXXXXXXXXXXXXVDLADRMHHRPNELSG---GQRQRVAIARALVVEPAIILADEPTGNL 176 +DL D HR + + G +++V +A AL P ++L DEP L Sbjct: 121 RWEVEARERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGL 180 Query: 177 DSRTGLSIM-ALFQQLHREGATILMVTHEMDIALH-AERIVYLRDGLI---------RGD 225 I+ A+ + T++++ H+M++ +R+V + G + D Sbjct: 181 SKEEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHEAVAD 240 Query: 226 ERVQRRKVAE 235 ERV++ + E Sbjct: 241 ERVRKAYLGE 250 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 73.9 bits (180), Expect = 4e-15 Identities = 78/265 (29%), Positives = 119/265 (44%), Gaps = 29/265 (10%) Query: 6 IRLEGVTKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGT 65 +R+E +T Y GE L G+ L R V I+G +G+GK+T + + L +P G Sbjct: 3 VRVEDLTVAYN-GE---PVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGR 58 Query: 66 YYLEGEDVSTLTDDQLADVRGRKVGFVFQTFNL--LPRMTALKNVELPLVYAGIPXXXXX 123 +L+G + + + + GR G+V Q + L MT + VE L G+ Sbjct: 59 VFLDGFEATGRPE-----MVGRYAGYVPQNPSAPKLSPMTVREFVETSLRLRGVTRARER 113 Query: 124 XXXXXXXXXVDLADRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLS 183 + + + R ELS G QRV IARA+ +P +++ DEP ++D + Sbjct: 114 AVEVLHTLGIR-GEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRME 172 Query: 184 IMALFQQLHREGATILMVTHEMDIAL-HAERIVYLRDGLIRG--DERVQR----RKVAEE 236 I + L RE +LM +H+ + L H + IV + LI E V R R+V E Sbjct: 173 IARIIAGLARE-RLVLMTSHDPSLLLGHTDIIVVINRDLIASGPPEEVYREDVLRRVYGE 231 Query: 237 ELARVANLDEEELSSAIEKHGGTHG 261 +AR L E GG HG Sbjct: 232 SVARGLVLAGE---------GGAHG 247 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 73.6 bits (179), Expect = 5e-15 Identities = 56/198 (28%), Positives = 94/198 (47%), Gaps = 6/198 (3%) Query: 24 ALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGTYYLEGEDVSTLTDDQLAD 83 A+ G+ +V E IMG +GSGK+TL+ +V + RP+ G+ + G DV D + Sbjct: 19 AVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVCGYDV---WGDGWRE 75 Query: 84 VRGRKVGFVFQTFNLLPRMTALKNVELPLVYAGIPXXXXXXXXXXXXXXVDLADRMHHRP 143 RG +GF Q + RMT + + + G+ + D + Sbjct: 76 ARGL-IGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREARRVLEMLGFEDVLGRVV 134 Query: 144 NELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSIMALFQQLHREGATILMVTH 203 LSGGQR+ + IA AL P +++ DEP LD R S+ A ++ + G T+L +H Sbjct: 135 ARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASLRKAFK-GRTVLFSSH 193 Query: 204 E-MDIALHAERIVYLRDG 220 + + ++R++ + G Sbjct: 194 DPQEAEAESDRVLIMHRG 211 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 73.6 bits (179), Expect = 5e-15 Identities = 59/223 (26%), Positives = 101/223 (45%), Gaps = 28/223 (12%) Query: 3 DEVIRLEGVTKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPT 62 D ++R+E + K + + AL + L + R + ++G +GSGK+TL+N++ +P Sbjct: 4 DIILRVEDLEKRFG----GIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPD 59 Query: 63 SGTYYLEGEDVSTLTDDQLADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYAGIPXXX- 121 G +G D++ ++ +++ K+G V +TF + T L +E L A P Sbjct: 60 GGRVLFKGRDITGMSPHEIS-----KLGLV-RTFQIPKPFTNLTVLENVLTAADSPGENV 113 Query: 122 ----------------XXXXXXXXXXXVDLADRMHHRPNELSGGQRQRVAIARALVVEPA 165 V L R ELSGGQ + + IARA++ Sbjct: 114 YLAGLARRLWLGFEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAE 173 Query: 166 IILADEPTGNLDSRTGLSIMALFQQLHRE-GATILMVTHEMDI 207 +I+ DEP ++ R SIM + L RE G T L++ H + + Sbjct: 174 MIIMDEPAAGVNPRLAGSIMERIKYLAREKGITFLIIEHRIGL 216 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 72.8 bits (177), Expect = 8e-15 Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 22/223 (9%) Query: 6 IRLEGVTKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGT 65 +RLEGV Y LRG+ ++ VA++G +GSGK+TL+ ++ + +P+ G Sbjct: 6 VRLEGVEARYNTSP---PVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGR 62 Query: 66 YYLEGEDVSTLTDDQLADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYA-GIPXXXX-- 122 + G + R +G+ + + PR LK VE+ L+Y G+ Sbjct: 63 VEVCGSPPGRVR---------RMLGYAPASPEVDPR---LKAVEVALLYRYGVSEGVAWG 110 Query: 123 ---XXXXXXXXXXVDLADRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSR 179 + + + R ELS GQR+ V +A L P + L DEP LD Sbjct: 111 RRDWEEVLAALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVS 170 Query: 180 TGLSIMALFQQLHREGATILMVTHEMDIALHAERIVYLRDGLI 222 + + + L R ATI+ TH+ A+ A+ ++ LR+GL+ Sbjct: 171 NMRRVTLVLRSL-RGRATIVYTTHDPLAAMAADSVIMLREGLL 212 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 69.7 bits (169), Expect = 7e-14 Identities = 67/253 (26%), Positives = 116/253 (45%), Gaps = 17/253 (6%) Query: 2 MDEVIRLEGVTKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRP 61 M VI +EG+ K Y V+ALRG+ +V E +G +G+GK+T + ++ RP Sbjct: 1 MGVVIEVEGLVKRYG----SVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRP 56 Query: 62 TSGTYYLEGEDVSTLTDDQLADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYAGIPXXX 121 TSG+ + G + L + + VR R+VG+V F ++ + ++ + + Sbjct: 57 TSGSARVFGVE---LYNPGASGVR-RRVGYVPGEFEFYGGVSGGRMLD---YWCRLVGGC 109 Query: 122 XXXXXXXXXXXVDLADRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTG 181 L + S G +Q +A+ A EP +++ DEPT LD Sbjct: 110 SRGVVRELLEAFPLP--LERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLAR 167 Query: 182 LSIMALFQQLHREGATILMVTHEM-DIALHAERIVYLRDGLIRGDERVQR--RKVAEEEL 238 ++ + REG T+ +H + ++ A+R+ LR G++ E V RK + Sbjct: 168 GRVLDFVRSKAREGVTVFFSSHVLSEVQRVADRVGLLRSGVLVALEDVSSLLRKSGKVVK 227 Query: 239 ARVA-NLDEEELS 250 ARV+ NL + L+ Sbjct: 228 ARVSKNLSPDRLA 240 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 67.4 bits (163), Expect = 4e-13 Identities = 63/214 (29%), Positives = 97/214 (45%), Gaps = 19/214 (8%) Query: 5 VIRLEGVTKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSG 64 V+RL V Y G LRG+ L R + G +G GKST++ + L G Sbjct: 3 VVRLRDVWYRYPGGG---WVLRGVSLEAPRG-ITLLAGPTGGGKSTILRVAAGLATRIYG 58 Query: 65 TYYLEGEDVSTLTDDQLADVRGRKVGFVFQTFNL-LPRMTALKNVELPLVYAGIPXXXXX 123 Y L GE + RG+ V V Q ++L + +T + +E +G+P Sbjct: 59 GY-LRGE----------VEARGKPV-LVPQDYDLFILSLTPREELEYCYEASGLPPWEAR 106 Query: 124 XXXXXXXXXVDLADRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLS 183 + + D + R ++LS G+RQRVAIA AL + ++L DEP D S Sbjct: 107 REAVRLAEELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVES 166 Query: 184 IMALFQQLHREGATILMVTHEMDIALHAERIVYL 217 ++ L ++L EG +++ H + L A VYL Sbjct: 167 LIRLLRRLDVEG--VVVAEHRVHYLLPAASSVYL 198 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 65.9 bits (159), Expect = 1e-12 Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 6/203 (2%) Query: 22 VQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGTYYLEGEDVSTLTDDQL 81 V AL+G+ + A++G +G+GK+TL+ + + +P G ++G + L Sbjct: 18 VHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYE---LRPKGP 74 Query: 82 ADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYAGIPXXXXXXXXXXXXXXVDLADRMH- 140 D + Q + P + A +++ + L+ AG L + Sbjct: 75 GDSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAEASEALGLNIDP 134 Query: 141 -HRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSIMALFQQLHREGATIL 199 E+ +RQR+ + +AL + +L DEPT +L ++ +L GA +L Sbjct: 135 DRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAASGAAVL 194 Query: 200 MVTHEMDIAL-HAERIVYLRDGL 221 +VTH + A+ HA+R+V LR G+ Sbjct: 195 LVTHRIGEAMEHADRLVILRKGV 217 Score = 55.5 bits (132), Expect = 1e-09 Identities = 50/211 (23%), Positives = 90/211 (42%), Gaps = 17/211 (8%) Query: 25 LRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGTYYLEGEDVSTLTDDQ---- 80 LR L VR+ E V + G +G+G+ L ++ L +P G + G DV+ Sbjct: 270 LRMARLEVRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRL 329 Query: 81 -LADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYA--GIPXXXXXXXXXXXXXXVDLAD 137 L + ++G L+P + N+ L + A G D+ Sbjct: 330 GLGVIPEERLGHA-----LVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGI 384 Query: 138 RM---HHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSIMALFQQLHRE 194 + +ELSGG QR+ +AR L ++P +++A P LD G +A ++ E Sbjct: 385 KAVSPRQMVDELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLE-GQQAVAEMMRMSSE 443 Query: 195 GATILMVTHEMDIALHAERIVYLRD-GLIRG 224 +L++ ++D L +Y+ G+++G Sbjct: 444 RGGVLVIDEDLDFLLRVSNKIYVASGGIVKG 474 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 64.3 bits (155), Expect = 3e-12 Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 9/199 (4%) Query: 25 LRGIWLTVRRNEFVAIMGASGSGKSTLMNI-VGCLDRPTSGTYYLEGEDVSTLTDDQLAD 83 LRG+ L+V+ E + G +G+GK+T + + VG L R SG + G D Sbjct: 30 LRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRD-SGEARVLGVDP---WGGGFER 85 Query: 84 VRGRKVGFVFQTFNLLPRMTALKNVEL-PLVYAGIPXXXXXXXXXXXXXXVDLADRMHHR 142 V+G +VG++ + ++ R+T ++N+ +Y+G + D + R Sbjct: 86 VKG-EVGYLPEDASVYERLTGMENILFYARLYSGWRDVEELVENAVFYSGLSRED-LARR 143 Query: 143 PNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSIMALFQQLHREGATILMVT 202 S G ++R+ + L+ +P +++ DEPT +D I + + L REG IL+ T Sbjct: 144 AGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSREGRAILVTT 203 Query: 203 HEMDIALH-AERIVYLRDG 220 H++ +A A+R+ + G Sbjct: 204 HDLALAEEIADRVTIIHGG 222 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 62.0 bits (149), Expect = 1e-11 Identities = 65/226 (28%), Positives = 99/226 (43%), Gaps = 24/226 (10%) Query: 2 MDEVIRLEGVTKTYTMGEVEVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRP 61 M ++RLE V K V LRG+ L + E V + GA+GSGK+TL+ + L P Sbjct: 1 MAALLRLENVWKMLGGRWV----LRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEP 56 Query: 62 TSGTYYLEGEDVSTLTDDQLADVRGRK--VGFVFQTFNLLPRMTALKNVELPLVYAGIPX 119 + G RG + VG+V T + +T +NVE G Sbjct: 57 SRGRV-------------SWGCPRGPRGCVGYVGHTPMVYGDLTVWENVEFFSSLHG-GS 102 Query: 120 XXXXXXXXXXXXXVDLADRMHHRPNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSR 179 + L H ++LS G R+R+ + RAL+ EP ++L DE LD Sbjct: 103 LGDYPLAAEAWRLLGLEKYGSHLASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQG 162 Query: 180 TGLSIMALFQQLHREGATILMVTHEMD---IALHAERIVYLRDGLI 222 ++ L + EG +LM T ++ + L A R+ L+DGL+ Sbjct: 163 ASEALSRLLRLALGEGLALLMTTPLLEPRYLGL-ASRVYTLQDGLL 207 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 61.2 bits (147), Expect = 3e-11 Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 13/224 (5%) Query: 25 LRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGTYYLEGEDVSTLTDDQLADV 84 L+ + LTV R ++G +G+GK+TL + L R G L GE V ++ Sbjct: 24 LKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALLGEPV-----ERAGGS 78 Query: 85 RGRKVGFVFQTFNLLPRMTALKNVELPLVYAGIPXXXXXXXXXXXXXXVDLADRMHHRPN 144 R+V ++ + MT + + L G+ L R+ R Sbjct: 79 LFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLEGYLEEASRLSG--LGGRLGERVR 136 Query: 145 ELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSIMALFQQL-HREGATILMVTH 203 S G R+R+ +A L ++P++ + DEPT LD + I L ++ R G T+L+ +H Sbjct: 137 SYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERHGVTVLLSSH 196 Query: 204 EM-DIALHAERIVYLRDGLI----RGDERVQRRKVAEEELARVA 242 M ++ I + G I E V+R + E A VA Sbjct: 197 NMYEVESVCSEITMISSGRIVYSGSPGEAVRRTGASSLEEAYVA 240 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 59.7 bits (143), Expect = 7e-11 Identities = 56/206 (27%), Positives = 88/206 (42%), Gaps = 40/206 (19%) Query: 38 VAIMGASGSGKSTLMNIVGCLDRPTSGTYYLEGEDVSTLTDDQLADVRGRKVGFVFQTFN 97 + ++G +G+GK+TL+ + L +P++G +EG V R GF Sbjct: 32 LGVLGPNGAGKTTLLKTILGLVKPSAGEILVEG-------------VNPRSPGFE----K 74 Query: 98 LLPRMTALKNVELPLV---------------YAGIPXXXXXXXXXXXXXXVDLADRMHHR 142 LLPR+ + ELP+V G V LA Sbjct: 75 LLPRIGYVP--ELPVVPLWTTPCILLETLARLEGYTSVEARVRAREALEVVGLAGECETP 132 Query: 143 PNELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSIMALFQQLHREGATILMVT 202 +LS G R+RV +A+A + E +++ DEP LD + L + + REGAT+++ + Sbjct: 133 IGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAREGATVIVSS 192 Query: 203 HEM----DIALHAERIVYLRDGLIRG 224 H + DIA H +V D L G Sbjct: 193 HILRELEDIATHV--LVLKTDQLFYG 216 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 51.6 bits (122), Expect = 2e-08 Identities = 53/233 (22%), Positives = 99/233 (42%), Gaps = 32/233 (13%) Query: 21 EVQALRGIWLTVRRNEFVAIMGASGSGKSTLMNIVGCLD--RPTSGTYYLEGEDVSTLTD 78 E L + ++ E A+MG +GSGKS+L ++ + G L+GE + L Sbjct: 14 EKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDILLDGESIKELPP 73 Query: 79 DQLADVRGRKVGFVFQTFNLLPRMTALKNVELPLVYAGIPXXXXXXXXXXXXXXVDLADR 138 ++ A ++G +F P++ ++ L + + + R Sbjct: 74 EERA-LKG-----IFMAQQDPPQIPGVRLSSLIIAFVN---KRLGAQDLSKPADPKIVKR 124 Query: 139 MHHRPNEL---------------SGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLS 183 M+ +L SGG+++R + +A++ +P I++ DEP LD GL Sbjct: 125 MYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDI-DGLK 183 Query: 184 IMALF-QQLHREGATILMVTHEMDIALHAE----RIVYLRDGLIRGDERVQRR 231 I+A F +QL G ++++TH + E ++Y L RG + R+ Sbjct: 184 IVAEFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGSVLARGGAELARQ 236 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 46.6 bits (109), Expect = 6e-07 Identities = 46/196 (23%), Positives = 85/196 (43%), Gaps = 12/196 (6%) Query: 33 RRNEFVAIMGASGSGKSTLMNIVGCLDRPTSGTYYLEGEDVSTLTDDQLADVRGRKVGFV 92 R + V ++G +G+GK+T + I+ +P G +EG + D+ L RG ++ Sbjct: 104 REGQVVGLLGRNGTGKTTALRILAGELKPNLGR--VEGGEPEW--DEILKRFRGSELQTY 159 Query: 93 FQTFNLLPRMTALKNVELPLVYAGIPXXXXXXXXXXXXXXVDLA-------DRMHHRP-N 144 F+ A K + LV + V L D++ R Sbjct: 160 FRKLVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGVALELAEQVGLDKVFDRDVR 219 Query: 145 ELSGGQRQRVAIARALVVEPAIILADEPTGNLDSRTGLSIMALFQQLHREGATILMVTHE 204 +LSGG+ Q++ I L + + + DEP+ LD R + + L R GA +++V H+ Sbjct: 220 QLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAARPGAYVMVVEHD 279 Query: 205 MDIALHAERIVYLRDG 220 + + + +V++ G Sbjct: 280 LAVLDYVSDLVHILYG 295 Score = 44.3 bits (103), Expect = 3e-06 Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 36/236 (15%) Query: 36 EFVAIMGASGSGKSTLMNIVGCLDRPTSGTYYLEGEDVST------LTDDQLADVRGRKV 89 E + + G +G GK+T + + +P G Y ED+ ++ + L D +V Sbjct: 384 EVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYVEDLRVSYKPQYISPESLPDATVEQV 443 Query: 90 GFVFQTFNLLPRMTALKNVELPLVYAGIPXXXXXXXXXXXXXXVDLADRMHHRPNELSGG 149 L P + N+EL + L + R LSGG Sbjct: 444 LKAANPAILAPG--SWLNLEL-------------------VKRMRLDKLLERRVRTLSGG 482 Query: 150 QRQRVAIARALVVEPAIILADEPTGNLD--SRTGLSIMALFQQLHREGATILMVTHEMDI 207 + Q+VA+A AL E + L DEP+ LD R G++ A+ + + A L+V H++ I Sbjct: 483 ELQKVAVAAALAREADVYLLDEPSAYLDVEERVGVA-RAIRRIVETREAAALVVEHDLMI 541 Query: 208 ALH-AERIVYLRDGLIRGDERVQRRKVAEEELARVANLDEEELSSAIEKHGGTHGP 262 + ++RI+ L+ G+ V+ + NL + L + K T P Sbjct: 542 LDYVSDRIM-----LVTGEPGVRGHVDDPRPVKEGMNLLLQNLGVTVRKDEQTGRP 592 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 251,132 Number of Sequences: 1700 Number of extensions: 10310 Number of successful extensions: 149 Number of sequences better than 1.0e-04: 39 Number of HSP's better than 0.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 51 length of query: 263 length of database: 492,079 effective HSP length: 75 effective length of query: 188 effective length of database: 364,579 effective search space: 68540852 effective search space used: 68540852 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719611|ref|YP_003875143.1| RND family efflux transporter MFP subunit [Spirochaeta thermophila DSM 6192] (421 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.134 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 366,704 Number of Sequences: 1700 Number of extensions: 16168 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 0 length of query: 421 length of database: 492,079 effective HSP length: 79 effective length of query: 342 effective length of database: 357,779 effective search space: 122360418 effective search space used: 122360418 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719612|ref|YP_003875144.1| hypothetical protein STHERM_c19360 [Spirochaeta thermophila DSM 6192] (410 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.130 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 393,135 Number of Sequences: 1700 Number of extensions: 16807 Number of successful extensions: 71 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71 Number of HSP's gapped (non-prelim): 0 length of query: 410 length of database: 492,079 effective HSP length: 79 effective length of query: 331 effective length of database: 357,779 effective search space: 118424849 effective search space used: 118424849 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719613|ref|YP_003875145.1| hypothetical protein STHERM_c19370 [Spirochaeta thermophila DSM 6192] (254 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 175,403 Number of Sequences: 1700 Number of extensions: 5796 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 0 length of query: 254 length of database: 492,079 effective HSP length: 75 effective length of query: 179 effective length of database: 364,579 effective search space: 65259641 effective search space used: 65259641 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719614|ref|YP_003875146.1| hypothetical protein STHERM_c19380 [Spirochaeta thermophila DSM 6192] (668 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 649,326 Number of Sequences: 1700 Number of extensions: 29584 Number of successful extensions: 87 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87 Number of HSP's gapped (non-prelim): 0 length of query: 668 length of database: 492,079 effective HSP length: 83 effective length of query: 585 effective length of database: 350,979 effective search space: 205322715 effective search space used: 205322715 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719615|ref|YP_003875147.1| histidine kinase [Spirochaeta thermophila DSM 6192] (379 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 375,061 Number of Sequences: 1700 Number of extensions: 16710 Number of successful extensions: 64 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 0 length of query: 379 length of database: 492,079 effective HSP length: 78 effective length of query: 301 effective length of database: 359,479 effective search space: 108203179 effective search space used: 108203179 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719616|ref|YP_003875148.1| hypothetical protein STHERM_c19400 [Spirochaeta thermophila DSM 6192] (154 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 172,375 Number of Sequences: 1700 Number of extensions: 7919 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 154 length of database: 492,079 effective HSP length: 70 effective length of query: 84 effective length of database: 373,079 effective search space: 31338636 effective search space used: 31338636 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719617|ref|YP_003875149.1| pyrroline-5-carboxylate reductase [Spirochaeta thermophila DSM 6192] (265 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430901|ref|NP_146998.2| pyrroline-5-carboxylate reductase ... 88 3e-19 >gi|118430901|ref|NP_146998.2| pyrroline-5-carboxylate reductase [Aeropyrum pernix K1] Length = 279 Score = 87.8 bits (216), Expect = 3e-19 Identities = 74/260 (28%), Positives = 116/260 (44%), Gaps = 15/260 (5%) Query: 6 VGCVGFGVMGETLVKGIRRAFPEVRLMVVEKVGERVQ--RACEEYGAEDTTAT--PARVF 61 V +G G +G +VK + VV G R + GAE T A+V Sbjct: 12 VAVLGVGKIGGAIVKSLLSCGA-----VVTGTGRRRETLERISRLGAEATVDNRLAAKV- 65 Query: 62 TEADLVILAVKPQDREALKGMAPDATRAAIF-SIIAGTPIRFFEETFGTREIVRVMPNIA 120 +D+VIL+VKP L D I S++AG + + R MPNI Sbjct: 66 --SDVVILSVKPYQLPRLLEEIRDVMEGKIVVSVVAGVRLSTLSRALEGSHVYRAMPNIN 123 Query: 121 AMVQKAPMGMSFHPLASEGTRTQALAVARAVGTPFEIPERLMPAFTGLSGSGIAYVLSFL 180 A++ ++ ++ + + ++ + +G+ + IPE M +T L GS AYV + Sbjct: 124 ALIGRSTTAVAEYTGDKRASFVES--ILSCMGSVYWIPEEWMDVWTALVGSMPAYVAVMI 181 Query: 181 HGMALAGTMTGIPYTESLRIVEALVEGTVALRRETDRHPEEMLTWVTSPAGTTIQGVHTL 240 + L G G+P + + V + T + D HP + VT+PAGTTI+G+ + Sbjct: 182 DSLTLGGVSAGLPREVAFKAVIDTLGATAEHLGKRDIHPSVLRDEVTTPAGTTIEGLKVI 241 Query: 241 ERGGFKALLMDAVKRAADRA 260 E G A L+ V+ AA RA Sbjct: 242 EGEGVDAALIRTVEAAARRA 261 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 263,629 Number of Sequences: 1700 Number of extensions: 11796 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 1 length of query: 265 length of database: 492,079 effective HSP length: 75 effective length of query: 190 effective length of database: 364,579 effective search space: 69270010 effective search space used: 69270010 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719618|ref|YP_003875150.1| seryl-tRNA synthetase [Spirochaeta thermophila DSM 6192] (425 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431671|ref|NP_148300.2| seryl-tRNA synthetase [Aeropyrum p... 269 8e-74 >gi|118431671|ref|NP_148300.2| seryl-tRNA synthetase [Aeropyrum pernix K1] Length = 460 Score = 269 bits (688), Expect = 8e-74 Identities = 168/436 (38%), Positives = 237/436 (54%), Gaps = 28/436 (6%) Query: 4 LRFVKEHVELVKENVRNRFME-VDVEGVVALYDRRNDLKARVDELRARRNEHARLM-KSA 61 L ++ + E +KE+VR R M+ V+ L L V+E+R R NE R++ K+ Sbjct: 7 LELLRSNPEALKEHVRKRLMDPAIVDRAYRLDVEWRRLLTMVNEVRRRHNEITRMIAKAG 66 Query: 62 SPDERPARVEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXIPNLSHPEAPVGKEEKDNLEI 121 S +ER + E +PN+ P+ PVG +E I Sbjct: 67 SREERERLIAEAKRLLREREDLEEKLKKVEREREEALLGLPNIVAPDVPVG-DESATRPI 125 Query: 122 RRWGK-------VPSF----------------DFEPRDHLEL-GRLLDIVDFDRAAKVSG 157 WGK V +F ++ PR H ++ +L + D RAA+V+G Sbjct: 126 EFWGKPKVWKGHVDAFREQTEAYGFKVDHEVIEWRPRGHADMMEEVLKLGDTLRAARVAG 185 Query: 158 AKFYYLKNEGALLELALVRYALDVLREKGFDLFTTPDLARESIVEGIGFQPRGAESNIYT 217 ++FYYL + L+LAL+ YA+D + KG+ L P + R +++ + + IY Sbjct: 186 SRFYYLFEDLVFLDLALLMYAIDFMTSKGYVLVLPPYMLRYNVMSRV-IDLETFKDAIYE 244 Query: 218 VEETDLCLVGTAEITLGGMYADEIIPGETLPLRFAGVSHCFRKEAGAAGQYSKGLYRVHQ 277 + DL L+ TAE L +Y + I E LPL+ GVS CFRKEAGA + KG++RVHQ Sbjct: 245 IAGEDLYLIATAEHPLAALYYNSEIYDEDLPLKLVGVSPCFRKEAGAGNRDLKGIFRVHQ 304 Query: 278 FTKVEMFVYCRPEESEGIHRELLAIEEEIHAGLGIPYRVVDTCTGDLGAPAYRKFDLEAW 337 F KVE FVY PEES +H EL++ +EI GL IP+RVV+ +GDLGA A +K+DLEAW Sbjct: 305 FHKVEQFVYSLPEESSKLHEELISNAKEIFKGLEIPFRVVNIASGDLGACAVKKYDLEAW 364 Query: 338 MPGREGWGEITSTSNCTDYQARRLGVRFKEAEGGKPRFVHMLNGTALAVPRVIIAILENF 397 MP + + E+ S SNCTD+QA RLG+R +G + +VH LN TA+A R I AILENF Sbjct: 365 MPAQGKYREMVSASNCTDWQAYRLGIRLVRRKGMERGYVHTLNATAVASTRTITAILENF 424 Query: 398 QERDGSVRIPEALVPY 413 Q+ +G V IP AL Y Sbjct: 425 QDEEGVVAIPRALRRY 440 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 435,171 Number of Sequences: 1700 Number of extensions: 20371 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 1 length of query: 425 length of database: 492,079 effective HSP length: 79 effective length of query: 346 effective length of database: 357,779 effective search space: 123791534 effective search space used: 123791534 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719619|ref|YP_003875151.1| neuB family protein [Spirochaeta thermophila DSM 6192] (381 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 423,487 Number of Sequences: 1700 Number of extensions: 21338 Number of successful extensions: 96 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96 Number of HSP's gapped (non-prelim): 0 length of query: 381 length of database: 492,079 effective HSP length: 78 effective length of query: 303 effective length of database: 359,479 effective search space: 108922137 effective search space used: 108922137 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719620|ref|YP_003875152.1| sensory box histidine kinase [Spirochaeta thermophila DSM 6192] (716 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 680,165 Number of Sequences: 1700 Number of extensions: 29712 Number of successful extensions: 74 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74 Number of HSP's gapped (non-prelim): 0 length of query: 716 length of database: 492,079 effective HSP length: 83 effective length of query: 633 effective length of database: 350,979 effective search space: 222169707 effective search space used: 222169707 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719621|ref|YP_003875153.1| cof family hydrolase [Spirochaeta thermophila DSM 6192] (333 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600951|ref|NP_147477.1| phosphoglycolate phosphatase [Aerop... 51 5e-08 >gi|14600951|ref|NP_147477.1| phosphoglycolate phosphatase [Aeropyrum pernix K1] Length = 239 Score = 50.8 bits (120), Expect = 5e-08 Identities = 66/272 (24%), Positives = 101/272 (37%), Gaps = 47/272 (17%) Query: 55 GTGGEVRWEFLLACDLDDTLLSGDGV--LPEEDLRLLRRAVRCGILPVVASGRPFASVRR 112 G G VR + A D+D TL G L + + R G+ ++ +G R Sbjct: 3 GLAGSVR---VAALDIDGTLTERRGAARLDGCSIAVARLLNDLGVTSILMTGNSLPVARG 59 Query: 113 VVEAFWPDVSLPFIAFNGALVGLSGTGTVLFSRRVPRVDACRFLEWAERHGLFAQTYDEE 172 V A + + P +A NG + + G + S R P R +E F ++ E Sbjct: 60 V--AVYLGLEGPVVAENGCVAVVGGERVHICSGRPPEGLVKRIMELG-----FKPSWQNE 112 Query: 173 YFYVPSEDDRAERYARNVGIPYRVVGPLSRFLSFDPPKVLLHDDPIRLEEHYPEALRLFG 232 Y RY IP + P ++ I EE Y + Sbjct: 113 Y-----------RYHEYSLIPVKAA-----------PGIVERASAIAEEEGYRAIWSGYA 150 Query: 233 DRLSLFFSKPQYLEVVHPEVDKGMALAWVAERYGVPRARVVAMGDSGNDVEMVRWAGTGV 292 L + P K + V R G + V+A+GD NDVE++ AG Sbjct: 151 ------------LHIQPPGGGKARGVGEVLARIGAGWSEVLAIGDGENDVEVLARAGYSG 198 Query: 293 AVANARQEVKEVASVVTGAPGGEGALREVFER 324 A +A ++ K A +V +PG G L E+ +R Sbjct: 199 APGDAAEQAKRAAKIVARSPGARGTL-EIIQR 229 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 400,509 Number of Sequences: 1700 Number of extensions: 20077 Number of successful extensions: 68 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 1 length of query: 333 length of database: 492,079 effective HSP length: 77 effective length of query: 256 effective length of database: 361,179 effective search space: 92461824 effective search space used: 92461824 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719622|ref|YP_003875154.1| hypothetical protein STHERM_c19460 [Spirochaeta thermophila DSM 6192] (242 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 261,512 Number of Sequences: 1700 Number of extensions: 11107 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 242 length of database: 492,079 effective HSP length: 74 effective length of query: 168 effective length of database: 366,279 effective search space: 61534872 effective search space used: 61534872 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719623|ref|YP_003875155.1| hypothetical protein STHERM_c19470 [Spirochaeta thermophila DSM 6192] (212 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.496 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 162,866 Number of Sequences: 1700 Number of extensions: 5760 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 212 length of database: 492,079 effective HSP length: 73 effective length of query: 139 effective length of database: 367,979 effective search space: 51149081 effective search space used: 51149081 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719624|ref|YP_003875156.1| solute carrier family 12 member 7 [Spirochaeta thermophila DSM 6192] (745 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.144 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 757,042 Number of Sequences: 1700 Number of extensions: 34755 Number of successful extensions: 126 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 126 Number of HSP's gapped (non-prelim): 0 length of query: 745 length of database: 492,079 effective HSP length: 84 effective length of query: 661 effective length of database: 349,279 effective search space: 230873419 effective search space used: 230873419 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719625|ref|YP_003875157.1| protein-export membrane protein SecF [Spirochaeta thermophila DSM 6192] (355 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.141 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 259,113 Number of Sequences: 1700 Number of extensions: 10288 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 0 length of query: 355 length of database: 492,079 effective HSP length: 78 effective length of query: 277 effective length of database: 359,479 effective search space: 99575683 effective search space used: 99575683 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719626|ref|YP_003875158.1| hypothetical protein STHERM_c19500 [Spirochaeta thermophila DSM 6192] (572 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 543,689 Number of Sequences: 1700 Number of extensions: 23771 Number of successful extensions: 96 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96 Number of HSP's gapped (non-prelim): 0 length of query: 572 length of database: 492,079 effective HSP length: 82 effective length of query: 490 effective length of database: 352,679 effective search space: 172812710 effective search space used: 172812710 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719627|ref|YP_003875159.1| preprotein translocase subunit YajC [Spirochaeta thermophila DSM 6192] (118 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.309 0.124 0.319 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,300 Number of Sequences: 1700 Number of extensions: 1713 Number of successful extensions: 4 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 118 length of database: 492,079 effective HSP length: 66 effective length of query: 52 effective length of database: 379,879 effective search space: 19753708 effective search space used: 19753708 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719628|ref|YP_003875160.1| hypothetical protein STHERM_c19520 [Spirochaeta thermophila DSM 6192] (387 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431714|ref|NP_148357.2| glycosyl transferase, group 1 [Aer... 81 5e-17 gi|14601239|ref|NP_147773.1| glycosyl transferase, group 1 [Aero... 55 4e-09 >gi|118431714|ref|NP_148357.2| glycosyl transferase, group 1 [Aeropyrum pernix K1] Length = 385 Score = 80.9 bits (198), Expect = 5e-17 Identities = 100/387 (25%), Positives = 166/387 (42%), Gaps = 36/387 (9%) Query: 3 IAFFMDCFPPMKNGVVTVVLQARDALVRRGHHVVIVSV-----DTSHHPYTGHEDFLLFP 57 I MD P GV + V L G+ VVIVS D GH +++ P Sbjct: 15 IVMVMDFHPSSVGGVQSHVRDLTRLLQDFGYDVVIVSRALGKGDVKDLEAEGH--YIVKP 72 Query: 58 QISLDFGSKQGYGYALTRKKRVIEFLKSHRIEIVHSHTEFXXXXXXXXXXXXXX-IPRVC 116 L+ L R+ IE LK ++VHSH + +PR+ Sbjct: 73 LFPLEIIFVPPDPSDLRRE---IESLKP---DVVHSHHIYTLTSLLALKAARDLGLPRIA 126 Query: 117 TAHTMWEDYAHYFPLLKMKPVVRTYFRRYLKGASLLIAPSPKSALYFREIT-PWMETVVV 175 T H+++ Y L ++ +V R L A +I+ S + I ++ ++ Sbjct: 127 TNHSIFLAYDKV-ALWRIASIVLPT-RYLLPNAQAVISVSTAADKMVEGIVGDSVDRYII 184 Query: 176 PNGIDIQRFKDNXXXXXXXXXXXXYRLSPGHRVVLFVGRMGPEKRIEELYEAMKPXXXXX 235 PNG+D++RFK + + +VLF+GR+ K L A + Sbjct: 185 PNGVDVERFKPSTP-------------KADYPLVLFLGRLVWRKGAHVLVRAFR-HVVDE 230 Query: 236 XXXXXXYVGDGPGFDPLAQRVKAE-GMEDRVILTGFVDWEKIAAFYSIAEV-FVSASLSE 293 Y+G F+P+ + + A G+E+ V + G V + + YS A V V + ++E Sbjct: 231 IRDAKLYIGGKGEFEPIIKLLIARYGLENNVKMLGVVPESEKPSLYSSAWVTAVPSIVNE 290 Query: 294 VHPITTLEAAAAGLPLVCRRDVSYEGVVREGENGFQV--DEDADLAEKVALLLEDTALRD 351 I LE+ ++G P+V R + VV+ G+ G V +LA+ + LL+D+ LR Sbjct: 291 SFGIVALESLSSGTPVVASRQGGLKDVVKHGKTGLLVKPGSSKELAKALITLLQDSGLRK 350 Query: 352 RMAAASRS-VADEYSIDRHAERLLEVY 377 RM+ +R V + Y + ++L+VY Sbjct: 351 RMSEEARKIVLERYDWRKVVPQILKVY 377 >gi|14601239|ref|NP_147773.1| glycosyl transferase, group 1 [Aeropyrum pernix K1] Length = 363 Score = 54.7 bits (130), Expect = 4e-09 Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 25/209 (11%) Query: 174 VVPNGIDIQRFKDNXXXXXXXXXXXXYRLSPGHR----VVLFVGRMGPEKRIEELYEAMK 229 VVPNG+D+++++ PG + +L+ GR+ K ++ L +A + Sbjct: 167 VVPNGVDLEKYR------------------PGSKDPRPTILWAGRIKMYKNLDHLLKAYR 208 Query: 230 PXXXXXXXXXXXYVGDGPGFDPLAQRVKAEGMEDRVILTGFVDWEKIAAFYSIAEVFVSA 289 +G G + + K D L + EKI + A + VS Sbjct: 209 IVKQEIPDAQLIIIGTGDQEQKMRELAKKLEPRDVHFLGKMSEQEKIM-WMQRAWIIVST 267 Query: 290 SLSEVHPITTLEAAAAGLPLVCRRDVSYEGVVREGENGFQVDED--ADLAEKVALLLEDT 347 S+ E IT EAAA +P + V+ E G V+ LA+ +A LL D Sbjct: 268 SMIEGWGITITEAAACKIPAIAYNVPGLRDSVKHMETGILVEPGNIEQLAKAIAWLLTDN 327 Query: 348 ALRDRMAAASRSVADEYSIDRHAERLLEV 376 +LR++++ + + A +S D A L + Sbjct: 328 SLRNKLSENAYNYAQSFSWDNTAITFLNI 356 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 362,658 Number of Sequences: 1700 Number of extensions: 14571 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 2 length of query: 387 length of database: 492,079 effective HSP length: 79 effective length of query: 308 effective length of database: 357,779 effective search space: 110195932 effective search space used: 110195932 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719629|ref|YP_003875161.1| hypothetical protein STHERM_c19530 [Spirochaeta thermophila DSM 6192] (210 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 179,841 Number of Sequences: 1700 Number of extensions: 6752 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 210 length of database: 492,079 effective HSP length: 73 effective length of query: 137 effective length of database: 367,979 effective search space: 50413123 effective search space used: 50413123 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719630|ref|YP_003875162.1| hypothetical protein STHERM_c19540 [Spirochaeta thermophila DSM 6192] (438 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.131 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 329,517 Number of Sequences: 1700 Number of extensions: 12013 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 0 length of query: 438 length of database: 492,079 effective HSP length: 80 effective length of query: 358 effective length of database: 356,079 effective search space: 127476282 effective search space used: 127476282 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719631|ref|YP_003875163.1| transmembrane transport protein [Spirochaeta thermophila DSM 6192] (285 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.131 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 256,871 Number of Sequences: 1700 Number of extensions: 10677 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 1 length of query: 285 length of database: 492,079 effective HSP length: 76 effective length of query: 209 effective length of database: 362,879 effective search space: 75841711 effective search space used: 75841711 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719632|ref|YP_003875164.1| transporter [Spirochaeta thermophila DSM 6192] (301 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 140 4e-35 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 131 2e-32 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 120 5e-29 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 118 2e-28 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 117 3e-28 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 114 4e-27 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 113 5e-27 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 109 7e-26 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 109 1e-25 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 108 1e-25 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 108 2e-25 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 104 3e-24 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 102 9e-24 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 100 3e-23 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 93 9e-21 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 92 2e-20 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 91 3e-20 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 90 6e-20 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 90 8e-20 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 89 2e-19 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 89 2e-19 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 87 4e-19 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 87 7e-19 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 83 1e-17 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 83 1e-17 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 82 2e-17 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 81 4e-17 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 77 7e-16 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 77 7e-16 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 75 2e-15 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 74 6e-15 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 74 6e-15 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 72 2e-14 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 70 6e-14 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 67 4e-13 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 62 2e-11 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 62 2e-11 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 59 1e-10 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 55 2e-09 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 52 1e-08 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 51 4e-08 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 140 bits (353), Expect = 4e-35 Identities = 79/241 (32%), Positives = 140/241 (58%), Gaps = 15/241 (6%) Query: 3 IVHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEG---- 58 +V E L + Y G AVDG++F + G + L+GP+GAGKTTT++++ L P G Sbjct: 6 MVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWI 65 Query: 59 ----IIQLPDEDHSHWIKRHVGYMPERFSLYEDLTVEENLWFFATVHGLSEAHFKEKAAW 114 I++ P ++R +G +P+ + ++++ +N++ A ++GL + +E+ Sbjct: 66 AGYSIVREPGN-----VRRVIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEARERTRE 120 Query: 115 LYRFSRLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDML 174 + + L RR SGGM++KL ++ +L+H+P++L LDEPT G+D SR+ W + Sbjct: 121 VLDYLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYI 180 Query: 175 DALRREGMGILISTPNLGEAEH-CDTVLFLHEGKIVLQGSPQQLSRRLEGRLFRIETEAD 233 + L+R + IL++T + EAE D V + G+IV +G+P++L R++G IE + D Sbjct: 181 EDLKRSAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEELKARVKGETVYIELK-D 239 Query: 234 P 234 P Sbjct: 240 P 240 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 131 bits (330), Expect = 2e-32 Identities = 84/219 (38%), Positives = 122/219 (55%), Gaps = 13/219 (5%) Query: 8 GLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQLPDEDH 67 G+ ++ +GRP + G++ SV G I L G +GAGKTT++R+++GL + G ++ D Sbjct: 19 GVAKSVKGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDP 78 Query: 68 SHW------IKRHVGYMPERFSLYEDLTVEENLWFFATVHG--LSEAHFKEKAAWLYRFS 119 W +K VGY+PE S+YE LT EN+ F+A ++ E A + S Sbjct: 79 --WGGGFERVKGEVGYLPEDASVYERLTGMENILFYARLYSGWRDVEELVENAVFYSGLS 136 Query: 120 RLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDALRR 179 R RRAG S GMK++L L L+ PRL++LDEPT+GVDP++ +L L R Sbjct: 137 R--EDLARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSR 194 Query: 180 EGMGILISTPNLGEAEH-CDTVLFLHEGKIVLQGSPQQL 217 EG IL++T +L AE D V +H G V G P +L Sbjct: 195 EGRAILVTTHDLALAEEIADRVTIIHGGSTVASGPPYRL 233 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 120 bits (300), Expect = 5e-29 Identities = 89/285 (31%), Positives = 138/285 (48%), Gaps = 28/285 (9%) Query: 3 IVHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQL 62 ++ VEGL + Y A+ G++FSV G + G +GP+GAGKTTT+R+++G P G ++ Sbjct: 4 VIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARV 63 Query: 63 PDED----HSHWIKRHVGYMPERFSLYEDLTVEENLWFFAT-VHGLSEAHFKEKAAWLYR 117 + + ++R VGY+P F Y ++ L ++ V G S +E Sbjct: 64 FGVELYNPGASGVRRRVGYVPGEFEFYGGVSGGRMLDYWCRLVGGCSRGVVRE------- 116 Query: 118 FSRLAPFRTRRA-GALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDA 176 P RA G S GMKQ LAL A H P L+++DEPTTG+DPL+R D + + Sbjct: 117 LLEAFPLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDFVRS 176 Query: 177 LRREGMGILISTPNLGEAEH-CDTVLFLHEGKIVLQGSPQQLSRRLEGRLFRIETEADPR 235 REG+ + S+ L E + D V L G +V L R+ G++ + Sbjct: 177 KAREGVTVFFSSHVLSEVQRVADRVGLLRSGVLVALEDVSSLLRK-SGKVVK-------- 227 Query: 236 ALREEVRRTAPHIPCYLGPDGIRITGTREELAPLLSASYHLEGPL 280 R + P L DG+R+ + EL ++++ LE L Sbjct: 228 -----ARVSKNLSPDRLAVDGVRVIRSNGELELVVTSGKALESVL 267 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 118 bits (295), Expect = 2e-28 Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 8/223 (3%) Query: 2 TIVHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQ 61 T++ G+ + Y+G+P +D + V G VGL+GP+GAGKTT +++ LGL + G + Sbjct: 3 TVLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVL 62 Query: 62 LPDED--HSHWIKRHVGYMPERFSLYEDLTVEENLWFFATVHGLSEAHFKEKAAWLYRFS 119 L D + VG + ER +L + V E L A + G S + + W R + Sbjct: 63 LNGLDPWREPRAREGVGVVFERPNLPSSMPVVEFLESAAAIIGSSPS----RVDWAIRAA 118 Query: 120 RLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDALRR 179 L + LS G+KQ+ A++ ALL PR L+ DEPT+ +DPL R+E +L L R Sbjct: 119 GLEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLNR 178 Query: 180 E-GMGILISTPNLGEAEHCDTVLF-LHEGKIVLQGSPQQLSRR 220 E G+ +L+S+ + E T ++ L G++ +GSP+ L RR Sbjct: 179 EHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDLFRR 221 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 117 bits (294), Expect = 3e-28 Identities = 76/212 (35%), Positives = 119/212 (56%), Gaps = 9/212 (4%) Query: 18 AVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQLPDED--HSHW-IKRH 74 A+ G++FSV EG I +GP+GAGKTTT+R++ L P+ G ++ D W +++ Sbjct: 27 ALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAGFDVVKERWEVRKR 86 Query: 75 VGYM--PERFSLYEDLTVEENLWFFATVHGLSEAHFKEKAAWLYRFSRLAPF--RTRRAG 130 +G M ER Y LT ENL++F ++G+ + K + + L + Sbjct: 87 IGVMLSVER-GFYWKLTGRENLYYFGRIYGIPQGELKSRIKEVLDLVGLTDLGGADKPFE 145 Query: 131 ALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDALRREGMGILISTPN 190 +S GMK +L L+ LL +P +LILDEPT G+DP S + ++ +L EG I I+T N Sbjct: 146 EMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSLASEGRTIFITTHN 205 Query: 191 LGEAEH-CDTVLFLHEGKIVLQGSPQQLSRRL 221 + EAE D V + G+I ++G+P +L RR+ Sbjct: 206 MVEAEMISDRVGIIIGGRIAMEGTPDELKRRV 237 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 114 bits (284), Expect = 4e-27 Identities = 69/212 (32%), Positives = 120/212 (56%), Gaps = 7/212 (3%) Query: 18 AVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQLPDED---HSHWIKRH 74 A+DG+ V G + L+GP+GAGKTT ++++ L P+ G ++ D ++ ++ Sbjct: 28 ALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANNVRSR 87 Query: 75 VGYM--PERFSLYEDLTVEENLWFFATVHGLSEAHFKEKAAWLYRFSRLAPFRTRRAGAL 132 +G + ER +LY L+ +NLWFF+ ++G+ K + L L + R Sbjct: 88 IGVVLGGER-ALYWRLSGWDNLWFFSQLYGIPPREAKRRVKELLEIVGLEEWAHVRVENY 146 Query: 133 SGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDALRREGMGILISTPNLG 192 S GMKQ+L ++ L+++P +L+LDEPT G+DP + +E ++ + REG +L++T + Sbjct: 147 SKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVLLTTHYMV 206 Query: 193 EAEH-CDTVLFLHEGKIVLQGSPQQLSRRLEG 223 EAE D V + +G+IV +G P+ L + G Sbjct: 207 EAEELSDRVAIISKGRIVAEGPPEDLKSLVGG 238 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 113 bits (283), Expect = 5e-27 Identities = 73/223 (32%), Positives = 119/223 (53%), Gaps = 9/223 (4%) Query: 4 VHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQL- 62 V EG+ + GR + ++ +V G + G++GP+GAGKTT R +LGL + G + L Sbjct: 9 VEAEGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALL 68 Query: 63 --PDEDHSHWIKRHVGYMPERFSLYEDLTVEENLWFFATVHGLSEAH-FKEKAAWLYRFS 119 P E + R V Y+PE Y ++T E L +A+++G+ + + E+A+ R S Sbjct: 69 GEPVERAGGSLFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLEGYLEEAS---RLS 125 Query: 120 RLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDML-DALR 178 L R + S GM+++L ++ L P L +LDEPT G+DP+ +L + Sbjct: 126 GLGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSE 185 Query: 179 REGMGILISTPNLGEAEH-CDTVLFLHEGKIVLQGSPQQLSRR 220 R G+ +L+S+ N+ E E C + + G+IV GSP + RR Sbjct: 186 RHGVTVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGEAVRR 228 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 109 bits (273), Expect = 7e-26 Identities = 77/256 (30%), Positives = 129/256 (50%), Gaps = 11/256 (4%) Query: 4 VHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQLP 63 V GLR+ + GR AV G++FSV +G ++GP+G+GKTT +R++ G+ P G +++ Sbjct: 5 VEARGLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVC 64 Query: 64 DED--HSHWIKRH--VGYMPERFSLYEDLTVEENLWFFATVHGLSEAHFKEKAAWLYRFS 119 D W + +G+ P+ + +T E + + GLS + +A + Sbjct: 65 GYDVWGDGWREARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREARRVLEML 124 Query: 120 RLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDALRR 179 R LSGG ++ L ++ AL NP +++LDEP +G+D +R+ W +LR+ Sbjct: 125 GFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLW---ASLRK 181 Query: 180 --EGMGILISTPNLGEAE-HCDTVLFLHEGKIVLQGSPQQLSRRLEGRLFRIETEADPRA 236 +G +L S+ + EAE D VL +H G++ G P++L +R + R+ AD Sbjct: 182 AFKGRTVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPRELIQRYAPKP-RVRVWADRAP 240 Query: 237 LREEVRRTAPHIPCYL 252 E T P YL Sbjct: 241 DGLEPVHTGPGFSDYL 256 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 109 bits (272), Expect = 1e-25 Identities = 69/230 (30%), Positives = 128/230 (55%), Gaps = 12/230 (5%) Query: 1 MTIVHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGII 60 M + +EG+ + + AVD + S+ +G L+GP G GKTTT+RLI GL++P+EG I Sbjct: 1 MAEIRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRI 60 Query: 61 QLPDED--HSHWIKRHVGYMPERFSLYEDLTVEENLWFFATVH------GLSEAHFKEKA 112 + ED R+V + + ++LY ++V +N+ F T+H GL++ + + Sbjct: 61 LIDGEDVTFKDPKDRNVAMVFQNYALYPHMSVFDNIAF--TLHLRRKEMGLTKDDIRRRV 118 Query: 113 AWLYRFSRLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWD 172 + + R+ R+ G LSGG +Q++AL+ AL+ P++ ++DEP + +D L R Sbjct: 119 IEVAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRA 178 Query: 173 MLDALRRE-GMGILISTPNLGEA-EHCDTVLFLHEGKIVLQGSPQQLSRR 220 L L+++ + + T + EA D + +++G++V G+P+++ R Sbjct: 179 ELKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEVYMR 228 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 108 bits (271), Expect = 1e-25 Identities = 76/211 (36%), Positives = 118/211 (55%), Gaps = 15/211 (7%) Query: 19 VDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEG-----IIQLPDEDHSHW--- 70 + ++ SV++G I LIGP+GAGKTT ++ + G+ E G IQL ED ++ Sbjct: 21 IKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNREPD 80 Query: 71 --IKRHVGYMPERFSLYEDLTVEENLWFFATVHGLSEAHFKEKAAWLYRFSRLAPFRTRR 128 +R V Y+ E ++++LT EENL A G S + ++ F RL + Sbjct: 81 EIARRGVIYVMEGRRIFKELTTEENLVSVAYAAGASRDDIRSVLSY---FPRLKERLGEK 137 Query: 129 AGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDAL-RREGMGILIS 187 AG LSGG +Q LA++ ALL+ P+LL+LDEP+ G+ P + + + L R EG+ IL++ Sbjct: 138 AGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHREEGLTILLA 197 Query: 188 TPNLGEA-EHCDTVLFLHEGKIVLQGSPQQL 217 N +A E D + G+IVL+GS ++L Sbjct: 198 EQNARKALEISDYGYVIENGRIVLEGSAEEL 228 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 108 bits (269), Expect = 2e-25 Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 7/224 (3%) Query: 4 VHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQLP 63 V ++ + +Y A+ G++FS E I ++GP G GKTT +++I GL P G + Sbjct: 6 VRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFG 65 Query: 64 DEDHSHW--IKRHVGYMPERFSLYEDLTVEENLWFFATVHGLSEAHFKEKAAWLYRFSRL 121 D++ +R VG++ + +L+ +TV +N+ F G S + + W L Sbjct: 66 GVDYTGLPPERRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWALETVGL 125 Query: 122 AP---FRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDALR 178 P F RR LSGG +Q++AL+ A+ + P +L+LDEP + +D R+ L L+ Sbjct: 126 TPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQ 185 Query: 179 RE-GMGILISTPNLGEA-EHCDTVLFLHEGKIVLQGSPQQLSRR 220 R+ G ++ T + EA E DT++ + +G+IV G+P ++ R Sbjct: 186 RKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEVYTR 229 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 104 bits (259), Expect = 3e-24 Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 9/224 (4%) Query: 3 IVHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQL 62 ++ V GL +Y G + G+ S+ G + ++GP G+GK+T ++ I L P+ G I Sbjct: 4 LLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVF 63 Query: 63 PDEDHSH-------WIKRHVGYMPERFSLYEDLTVEENLWF-FATVHGLSEAHFKEKAAW 114 D + ++R +GY+P+ +SL+ +TV N+ + GLS +E+A Sbjct: 64 RGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAEERAVK 123 Query: 115 LYRFSRLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDML 174 + R LSGG +Q+ AL+ AL P +L+LDEPT+ +DP SR + + L Sbjct: 124 YLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEAL 183 Query: 175 DALRREGMGILISTPNLGEA-EHCDTVLFLHEGKIVLQGSPQQL 217 + G +++ T A + D + F+ +G + +G P +L Sbjct: 184 FRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSEL 227 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 102 bits (255), Expect = 9e-24 Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 9/224 (4%) Query: 3 IVHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQL 62 ++ V+ + Y A+ G++ V +G IV L+G +GAGKTTT+ I GL P G I Sbjct: 6 LLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIW 65 Query: 63 PDEDHSHW-----IKRHVGYMPERFSLYEDLTVEENLWFFATVHGLSEAHFKEKAAWLYR 117 D + ++ + ++PE ++ LTV ENL A+ E HF++ +Y Sbjct: 66 QGRDITGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRVAASTRRAKE-HFQDSLEQVYT 124 Query: 118 -FSRLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDA 176 F L R++ AG LSGG +Q LA++ AL+ P LL++DEP+ G+ P ++ + Sbjct: 125 IFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLASR 184 Query: 177 LRRE-GMGILISTPNLG-EAEHCDTVLFLHEGKIVLQGSPQQLS 218 LR E G+ IL+ N+G + D + G+IVL+G+ +L+ Sbjct: 185 LREELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDELA 228 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 100 bits (250), Expect = 3e-23 Identities = 67/218 (30%), Positives = 110/218 (50%), Gaps = 4/218 (1%) Query: 1 MTIVHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGII 60 M V +EG+ + + AV + +++ V ++GP G+GKTT + LI G+ P G I Sbjct: 1 MASVKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRI 60 Query: 61 QLPDEDHSHWI--KRHVGYMPERFSLYEDLTVEENLWFFATVHGLSEAHFKEKAAWLYRF 118 D D + KR++G + + ++LY +TV EN+ F + E KEK + + Sbjct: 61 YFNDVDVTDLPPNKRNIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVAKL 120 Query: 119 SRLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDALR 178 + R LSGG +Q++AL+ AL+ P +L+LDEP + +D L R + L L+ Sbjct: 121 LGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQ 180 Query: 179 RE-GMGILISTPNLGEA-EHCDTVLFLHEGKIVLQGSP 214 +E G+ + T + EA D + + G I G P Sbjct: 181 KELGITAIYVTHDQSEALAMADRIAIIASGVIQQVGKP 218 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 92.8 bits (229), Expect = 9e-21 Identities = 62/230 (26%), Positives = 115/230 (50%), Gaps = 16/230 (6%) Query: 1 MTIVHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEG-- 58 M V +EG+ + + A+ GI + +G V L+GP G GKTTT+R++ GL+ P+ G Sbjct: 1 MAGVRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRV 60 Query: 59 ------IIQLPDEDHSHWIKRHVGYMPERFSLYEDLTVEENLWFFATVHGLSEAHFKEKA 112 + LP +D R+V + + ++L+ + V +N+ F + L + Sbjct: 61 YFDGRDVTGLPPKD------RNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRV 114 Query: 113 AWLYRFSRLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWD 172 W + R LSGG +Q++A++ A++ P +L++DEP + +D + R + Sbjct: 115 RWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRS 174 Query: 173 MLDAL-RREGMGILISTPNLGEAEHC-DTVLFLHEGKIVLQGSPQQLSRR 220 + L RR G+ ++ T + EA D ++ ++ G+I G+P + R Sbjct: 175 EIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDVYHR 224 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 91.7 bits (226), Expect = 2e-20 Identities = 62/189 (32%), Positives = 101/189 (53%), Gaps = 4/189 (2%) Query: 3 IVHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQL 62 ++ +E + + GR + G++ ++ G V + G +G+GKTT +RL GL P G + Sbjct: 4 LLRLENVWKMLGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRVSW 63 Query: 63 PDEDHSHWIKRHVGYMPERFSLYEDLTVEENLWFFATVHGLSEAHFKEKAAWLYRFSRLA 122 +VG+ P +Y DLTV EN+ FF+++HG S + AA +R L Sbjct: 64 GCPRGPRGCVGYVGHTP---MVYGDLTVWENVEFFSSLHGGSLGDYP-LAAEAWRLLGLE 119 Query: 123 PFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDALRREGM 182 + + A LS G +++L + ALL PRLL+LDE TG+D + + +L EG+ Sbjct: 120 KYGSHLASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLLRLALGEGL 179 Query: 183 GILISTPNL 191 +L++TP L Sbjct: 180 ALLMTTPLL 188 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 91.3 bits (225), Expect = 3e-20 Identities = 70/240 (29%), Positives = 117/240 (48%), Gaps = 11/240 (4%) Query: 4 VHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQLP 63 V VE L Y G P + G+ +V +IGP+GAGKTT ++ ILGL P G + L Sbjct: 3 VRVEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLD 62 Query: 64 DED---HSHWIKRHVGYMPERFSL--YEDLTVEENLWFFATVHGLSEAHFKEKAA-WLYR 117 + + R+ GY+P+ S +TV E + + G++ A +E+A L+ Sbjct: 63 GFEATGRPEMVGRYAGYVPQNPSAPKLSPMTVREFVETSLRLRGVTRA--RERAVEVLHT 120 Query: 118 FSRLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDAL 177 R LS GM Q++ ++ A+ +P++L++DEP VDP R E ++ L Sbjct: 121 LGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAGL 180 Query: 178 RREGMGILISTPNLGEAEHCDTVLFLHEGKIVLQGSPQQLSRRLEGRLFRIETEADPRAL 237 RE + ++ S H D ++ ++ ++ G P+++ R E L R+ E+ R L Sbjct: 181 ARERLVLMTSHDPSLLLGHTDIIVVINR-DLIASGPPEEVYR--EDVLRRVYGESVARGL 237 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 90.1 bits (222), Expect = 6e-20 Identities = 54/221 (24%), Positives = 114/221 (51%), Gaps = 4/221 (1%) Query: 1 MTIVHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGII 60 M + +E + + + A+D ++ ++ +G I L+GP G GKTTT+R+I G + P+EG + Sbjct: 1 MAGIRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRV 60 Query: 61 QLPDEDHSHW--IKRHVGYMPERFSLYEDLTVEENLWFFATVHGLSEAHFKEKAAWLYRF 118 + D + +R+ + + ++L+ + V +N+ + + L + + W Sbjct: 61 YIGSRDVTMLKPYERNTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWAAEL 120 Query: 119 SRLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDAL- 177 + R LSGG +Q++A++ A++ P +L++DEP + +D R + + + L Sbjct: 121 LEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQ 180 Query: 178 RREGMGILISTPNLGEA-EHCDTVLFLHEGKIVLQGSPQQL 217 +R G+ I+ T + EA V ++ G++ G+P ++ Sbjct: 181 KRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEV 221 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 89.7 bits (221), Expect = 8e-20 Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 17/234 (7%) Query: 4 VHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGL-----DHPEEG 58 V V GL + + GI+F G + ++GP G+GK+T +R+I L EG Sbjct: 6 VRVSGLNVWITDKHILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEG 65 Query: 59 IIQLPD----EDHSHWIKRHVGYMPERFSLYEDLTVEENLWFFATVHGLSE--AHFKEKA 112 + + + ++ + I+R+ G + + + + +T+ EN+ +HGL++ E Sbjct: 66 EVWINNMNVMKEDPYNIRRYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEIV 125 Query: 113 AWLYRFSRLAPFRTRRAG----ALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRK 168 W + + L R LSGG +Q+L+L+ AL PR+L+LDEPT +DP+S Sbjct: 126 EWALKMAHLWDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTV 185 Query: 169 EFWDMLDALRREGMGILISTPNLGE--AEHCDTVLFLHEGKIVLQGSPQQLSRR 220 + + +E M +I + + A D +LFL+EG+++ G ++L R Sbjct: 186 KIEQSIVEYAKEEMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELVLR 239 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 88.6 bits (218), Expect = 2e-19 Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 13/235 (5%) Query: 4 VHVEGLRRTY-QGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQL 62 V + G+ + Y G A+D + F++ G + L+G +GAGKTT MR++ G P G I + Sbjct: 13 VAMRGIVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYV 72 Query: 63 PDEDHSH---W--IKRHVGYMPERFSLYEDLTVEENLWFFATVHGLSEAHFKEKAAWLYR 117 S W I+ + + ++F L E +TVEEN+ + + GL + + + Sbjct: 73 WGRKVSWRGPWDAIRNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRTLETAE 132 Query: 118 FSRLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDAL 177 L + L G +Q++ + AL ++LILDEPT+ + PL ++ + L L Sbjct: 133 RLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLRLL 192 Query: 178 RREGMGILISTPNLGEAEH-CDTVLFLHEGKI------VLQGSPQQLSRRLEGRL 225 + G+ ++ T LGE D V L G++ V + S ++L+R + G L Sbjct: 193 KDMGVSVVYITHKLGEVVRVADRVTVLRRGRVSAVIEDVGRTSEEELARLMVGTL 247 Score = 65.1 bits (157), Expect = 2e-12 Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 16/231 (6%) Query: 3 IVHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQL 62 ++ V G+ G V ++ V EG IVG+ G G G+ + I+GL P G I++ Sbjct: 262 LLSVRGVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEV 321 Query: 63 PD---EDHSHWIKRHVGYMPERFS--LYEDLTVEENLWFFATVHGLSEAHFKEKAAWLYR 117 E + + GY+ L D +V EN+ F + + + L+R Sbjct: 322 QGRRIEGSLDFYRAGGGYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRRSRLEDLFR 381 Query: 118 -----FSRLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWD 172 F +A G LSGG +QK+ + +L +LL+ PT G+D + + Sbjct: 382 RLVERFRLVARSPWTPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTSFVRN 441 Query: 173 MLDALRREGMGILISTPNLGE-AEHCDTVLFLHEGKIV-----LQGSPQQL 217 +L L R+G GIL+ + +L E E D + + G++ Q +P++L Sbjct: 442 LLSELARQGAGILLVSTDLDEILELSDRIYVMSGGRVTGVLERSQATPEKL 492 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 88.6 bits (218), Expect = 2e-19 Identities = 58/225 (25%), Positives = 113/225 (50%), Gaps = 9/225 (4%) Query: 3 IVHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQL 62 I+ +E + Y + ++ + G I ++GP+GAGK+T ++ + G +G + Sbjct: 5 IIKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLF 64 Query: 63 PDEDHSHW-----IKRHVGYMPERFSLYEDLTVEENLWFFATVHGLSEAHFKEKAAWLYR 117 + D +H K + ++ + +++ +LTV ENL + L E F+++ ++ Sbjct: 65 ENTDVTHMPPHDRAKIGMTFIFQLENIFRELTVYENLRLAG--YDLPEDVFRDRLEEVFS 122 Query: 118 -FSRLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDA 176 F RL ++AG LSGG +Q LA++ ++ P++ ++DEPT G+ P KE + Sbjct: 123 MFPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVRI 182 Query: 177 LRREGMGILISTPNL-GEAEHCDTVLFLHEGKIVLQGSPQQLSRR 220 L +EG +++ N+ E D + + G+I G ++L R Sbjct: 183 LNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDGPAEELLAR 227 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 87.4 bits (215), Expect = 4e-19 Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 34/238 (14%) Query: 7 EGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQLPDED 66 E + + G A+D ++ V G I+G+IGP+GAGKT+ + +I G+ P+ G + D Sbjct: 5 ENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRD 64 Query: 67 HSHWIKRH------VGYMPERFSLYEDLTVEENLWFFATVHGLSEAHFKEKAAWLYRFSR 120 + +K H + + L+ +TV EN+ +H + EKA W +R R Sbjct: 65 IT-GLKPHQRITLGLSRTFQHSELFHSMTVLENI--MVRLHPWTRGSILEKALWAFRAKR 121 Query: 121 -----------------LAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVD 163 L R GAL G+++K+ L+ AL NP ++++DEP G Sbjct: 122 WEVEARERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAG-- 179 Query: 164 PLSRKEFWDMLDAL--RREGMG---ILISTPNLGEAEHCDTVLFLHEGKIVLQGSPQQ 216 LS++E D++ A+ E M +LI + CD V+ + GK++ +G P + Sbjct: 180 -LSKEEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHE 236 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 86.7 bits (213), Expect = 7e-19 Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 10/218 (4%) Query: 4 VHVEGLRRTYQGRPAV-DGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQL 62 V +EG+ Y P V G++FS+D G +V L+GP+G+GKTT +RL+ G+ P G +++ Sbjct: 6 VRLEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEV 65 Query: 63 PDEDHSHWIKRHVGYMPERFSLYEDLTVEENLWFFATVHGLSEAHFKEKAAWLYRFSRLA 122 ++R +GY P + L E + +G+SE + W + L Sbjct: 66 CGSPPGR-VRRMLGYAPASPEVDPRLKAVEVALLYR--YGVSEGVAWGRRDWEEVLAALG 122 Query: 123 PFRT-----RRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDAL 177 RR G LS G ++ + L+ L P L +LDEP + +D + + +L +L Sbjct: 123 EMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRSL 182 Query: 178 RREGMGILISTPNLGEAEHCDTVLFLHEGKIVLQGSPQ 215 R I+ +T + A D+V+ L EG + QG P+ Sbjct: 183 RGRAT-IVYTTHDPLAAMAADSVIMLREGLLHAQGPPE 219 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 82.8 bits (203), Expect = 1e-17 Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 30/245 (12%) Query: 3 IVHVEGLRRTYQ----------GRP-----AVDGITFSVDEGRIVGLIGPDGAGKTTTMR 47 IV + GL+ Y GRP AVDG+ + EG ++ ++G G GKTT + Sbjct: 7 IVSIRGLKVHYPVYYSLLKRILGRPDAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLGK 66 Query: 48 LILGLDHPEEGIIQLPDE---------DHSHWIKRHVGYMPERFSLYEDLTVEENLWFFA 98 I+G++ P +G I E D K + + SL + V + + Sbjct: 67 AIVGIEEPSDGAIYYRGELLTPHRLARDRRLRRKLQMVFQDPYKSLDPLMPVGDQVAEPL 126 Query: 99 TVHGLSEA-HFKEKAAWLYRFSRLAP---FRTRRAGALSGGMKQKLALSCALLHNPRLLI 154 +HGL+ + +A + L P F R+ LSGG +Q++A++ L+ P +++ Sbjct: 127 VIHGLARGEEARRRAVEMLETVGLTPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIV 186 Query: 155 LDEPTTGVDPLSRKEFWDM-LDALRREGMGILISTPNLGEAEH-CDTVLFLHEGKIVLQG 212 DEP + +D R D+ +D RR G I++ T ++ A D + ++ GKIV G Sbjct: 187 ADEPVSMIDVSMRASILDLIMDYHRRTGATIVLITHDIAVARAVADRIAVMYLGKIVEVG 246 Query: 213 SPQQL 217 P+ + Sbjct: 247 EPRSV 251 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 82.8 bits (203), Expect = 1e-17 Identities = 63/236 (26%), Positives = 109/236 (46%), Gaps = 21/236 (8%) Query: 3 IVHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQL 62 I+ VE L + + G A+D + ++ G++ LIGP+G+GKTT + +I G P+ G + Sbjct: 6 ILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLF 65 Query: 63 PDEDHSHWIKRHVGY--MPERFSL---YEDLTVEENLWFFATVHGLS------------- 104 D + + + F + + +LTV EN+ A G + Sbjct: 66 KGRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWLG 125 Query: 105 -EAHFKEKAAWLYRFSRLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVD 163 E +A + + L RR+G LSGG + L ++ A++ ++I+DEP GV+ Sbjct: 126 FEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVN 185 Query: 164 PLSRKEFWDMLDALRRE-GMGILISTPNLG-EAEHCDTVLFLHEGKIVLQGSPQQL 217 P + + L RE G+ LI +G E+ D V + GK++ G P ++ Sbjct: 186 PRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEV 241 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 82.0 bits (201), Expect = 2e-17 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 5/244 (2%) Query: 4 VHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQL- 62 V+ L + + R A + F+ G I+G++GP+GAGKTT ++ ILGL P G I + Sbjct: 5 VNASALSKRFGQRYAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVE 63 Query: 63 ---PDEDHSHWIKRHVGYMPERFSLYEDLTVEENLWFFATVHGLSEAHFKEKAAWLYRFS 119 P + +GY+PE + T L A + G + + +A Sbjct: 64 GVNPRSPGFEKLLPRIGYVPELPVVPLWTTPCILLETLARLEGYTSVEARVRAREALEVV 123 Query: 120 RLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDALRR 179 LA G LS G ++++ ++ A + LL+LDEP +G+DP ++L + R Sbjct: 124 GLAGECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAR 183 Query: 180 EGMGILISTPNLGEAEHCDTVLFLHEGKIVLQGSPQQLSRRLEGRLFRIETEADPRALRE 239 EG +++S+ L E E T + + + + GS ++L L G I + A+P E Sbjct: 184 EGATVIVSSHILRELEDIATHVLVLKTDQLFYGSIEELRAWLSGTPRIILSVAEPERAVE 243 Query: 240 EVRR 243 +RR Sbjct: 244 VLRR 247 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 80.9 bits (198), Expect = 4e-17 Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 16/228 (7%) Query: 4 VHVEGLRRTYQGRP----AVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEG- 58 V VEG+ + Y+ R A+ ++ SV G ++ ++GP G+GKTT + +I G+D P G Sbjct: 11 VVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGR 70 Query: 59 -------IIQLPDEDHSHWIKRHVGYMPERFSLYEDLTVEENLWFFATVHGLSEAHFKEK 111 + E+ + VGY+ ++ +L LT EN+ + G + + + Sbjct: 71 VIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIPTLTALENILLPMALAGKAN---RLR 127 Query: 112 AAWLYRFSRLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFW 171 L R L R LSGG +Q+LA++ AL ++P +++ DEPT +D + + Sbjct: 128 GQELLRRVGLGGKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIV 187 Query: 172 D-MLDALRREGMGILISTPNLGEAEHCDTVLFLHEGKIVLQGSPQQLS 218 +L+ G ++++T + A D V + +G++ SP +++ Sbjct: 188 RILLEEAHSRGKTVVLTTHDPRVARMADRVAVIEDGRLRGVYSPSRIA 235 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 76.6 bits (187), Expect = 7e-16 Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 6/222 (2%) Query: 3 IVHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQL 62 I+ V + + + G A+ G++FSV G VGLIGP+GAGKTT +I G+ P+ G + Sbjct: 4 ILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIY 63 Query: 63 PDEDHSHW--IKRHVGYMPERFSLYE---DLTVEENLWFFATVHGLSEAHFKEKAAWLYR 117 D + W +R + F + +LTV N+ A + +E+A Sbjct: 64 KGVDITGWPAYRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAMEAID 123 Query: 118 FSRLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEF-WDMLDA 176 LA A L+ K++L L+ AL P LL+LDE G+ P + + +L+ Sbjct: 124 MVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLEI 183 Query: 177 LRREGMGILISTPNLGEAEHCDTVLFLHEGKIVLQGSPQQLS 218 +R I++ + V+ LH G+ + +G+P++++ Sbjct: 184 SKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVA 225 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 76.6 bits (187), Expect = 7e-16 Identities = 65/238 (27%), Positives = 107/238 (44%), Gaps = 35/238 (14%) Query: 18 AVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGII------QLPDEDHSHWI 71 AVDG++FS+ G + L+G G GKTTT + IL L G + ++ +E + Sbjct: 49 AVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERRGV 108 Query: 72 KR-----------------------HVGYMPERFSLYEDLTVEENLWFFATVHGLSEAHF 108 K + Y SL T++ L +H + A Sbjct: 109 KSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNARE 168 Query: 109 KEK-AAWLYRFSRLAP---FRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDP 164 +E+ A + +L P F R LSGG +Q++A++ A + NP L++ DEP + +D Sbjct: 169 REEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSMLDV 228 Query: 165 LSRKEFWDMLDALRRE-GMGILISTPNLGEAEH-CDTVLFLHEGKIVLQGSPQQLSRR 220 R E ++L R + G +L T +L A + CD + ++ GKIV G +++ R Sbjct: 229 SIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDARRIIER 286 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 75.5 bits (184), Expect = 2e-15 Identities = 71/248 (28%), Positives = 115/248 (46%), Gaps = 36/248 (14%) Query: 3 IVHVEGLR---RTYQGR-PAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEG 58 I+ VE L+ TY G A++ ++F + G L+G G GK+ T R + L +P Sbjct: 9 IIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGR 68 Query: 59 IIQ-----------------LPDEDHSHWIKRHVGYMPERFSLYED------LTVEENLW 95 I++ L +++ + Y+ + S D V E + Sbjct: 69 IVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETML 128 Query: 96 FFATVHGLSEAHFKEKAAWLYRFSRLAPFRTRRAGA----LSGGMKQKLALSCALLHNPR 151 V L E +A + + + L P +R + LSGGMKQ+ + +L + P+ Sbjct: 129 AHGRVRSLREG--VRRAVGVLK-TVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPK 185 Query: 152 LLILDEPTTGVDPLSRKEFWDMLDALRRE-GMGILISTPNLG-EAEHCDTVLFLHEGKIV 209 LLI DEPTT +D + + D+L L+RE G+ +L+ T NLG AE+CD V ++ G IV Sbjct: 186 LLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIV 245 Query: 210 LQGSPQQL 217 + +L Sbjct: 246 EEAPVDEL 253 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 73.6 bits (179), Expect = 6e-15 Identities = 57/219 (26%), Positives = 110/219 (50%), Gaps = 19/219 (8%) Query: 18 AVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGII------------QLPDE 65 AVDG++ SV++G + ++G G+GK+T I L P I+ L E Sbjct: 22 AVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRILYSGVDLLSLAGE 81 Query: 66 DHSHWIKRHVGYMPERFSLYED--LTVEENLWFFATVHGLSEAHFKEKAAWLYRFSRLAP 123 + + R +G + + + Y D TV + HGL+ + + ++ + Sbjct: 82 ELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLASSGSEAESMAGDALELVGI 141 Query: 124 FRTRRA---GALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDALRRE 180 R R + LSGG +Q++A++ A+ P++LI DEPTT +D + + + D++ L+ E Sbjct: 142 PRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKIMDLMKKLQEE 201 Query: 181 -GMGILISTPNLG-EAEHCDTVLFLHEGKIVLQGSPQQL 217 G+ +++ T ++G AE+ D + ++ G++V G + + Sbjct: 202 RGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDV 240 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 73.6 bits (179), Expect = 6e-15 Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 11/231 (4%) Query: 6 VEGLRRTYQGRP-AVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGII---- 60 VE L Y G A+ G+T S G + L+G +GAGKTT ++ I+G+ P +G I Sbjct: 7 VEDLDVVYPGGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDG 66 Query: 61 -QLPDEDHSHWIKRHVGYMPERFSLYEDLTVEENLWFFATVHGLSEAHFKEKAAWLYRFS 119 +L + ++ + + +Y + E+L V G +A ++ L S Sbjct: 67 YELRPKGPGDSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAG-RKAGLRQARTMLAEAS 125 Query: 120 RLAPFR---TRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDA 176 R G + +Q+L + AL R ++LDEPTT + P + Sbjct: 126 EALGLNIDPDRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGR 185 Query: 177 LRREGMGILISTPNLGEA-EHCDTVLFLHEGKIVLQGSPQQLSRRLEGRLF 226 L G +L+ T +GEA EH D ++ L +G V +G P + + +F Sbjct: 186 LAASGAAVLLVTHRIGEAMEHADRLVILRKGVKVYEGPPPSSTEEVAKLMF 236 Score = 45.1 bits (105), Expect = 2e-06 Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 24/202 (11%) Query: 26 VDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQLPDEDHSH---WIKRHVGY--MPE 80 V +G +VG+ G G G+ +I+GL P +G I + D + +R +G +PE Sbjct: 277 VRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRLGLGVIPE 336 Query: 81 RFSLYEDLTVEENLWF--FATVHGLSEAHFKEKAAWLYRFSRLAPFRTRRAGA------- 131 L L E++ F ++H + + W Y + +LA R G Sbjct: 337 E-RLGHALVPGESIAFNIALSIHTARDGFIVD---WRY-YEKLAEEMIRDMGIKAVSPRQ 391 Query: 132 ----LSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDALRREGMGILIS 187 LSGG Q+L L+ L PRLL+ P G+D ++ +M+ G G+L+ Sbjct: 392 MVDELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRMSSERG-GVLVI 450 Query: 188 TPNLGEAEHCDTVLFLHEGKIV 209 +L +++ G IV Sbjct: 451 DEDLDFLLRVSNKIYVASGGIV 472 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 72.0 bits (175), Expect = 2e-14 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%) Query: 18 AVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQLPDEDHSHWIKRHVGY 77 AVD +T + G+ +GL+G G+GKTT R+IL L+ P G I D R + Sbjct: 51 AVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGLKE 110 Query: 78 MPERFSL-----YEDLTVEENLWFFAT----VHGLSEAHFKEK-AAWLYRFSRLAPFRTR 127 R + Y L + ++ VHG+ +E + LY+ R Sbjct: 111 FRRRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQVGLNETHLYR 170 Query: 128 RAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDML-DALRREGMGILI 186 SGG +Q++A++ L P ++LDEPT+ +D + + ++L D R+ + L Sbjct: 171 YPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTYLF 230 Query: 187 STPNLGEAEH-CDTVLFLHEGKIVLQGSPQQL 217 + +LG + D + ++ GKIV G +++ Sbjct: 231 ISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEV 262 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 70.1 bits (170), Expect = 6e-14 Identities = 63/249 (25%), Positives = 113/249 (45%), Gaps = 50/249 (20%) Query: 18 AVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGII----------------- 60 AVDG++ S+ +G I+G++G G+GKTT + I+GL P G + Sbjct: 29 AVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELEEAVSIYE 88 Query: 61 ------QLPDEDHSHW---IKRHVGYMPERF------------------SLYEDLTVEEN 93 + ED + IK H Y +R SL + V E Sbjct: 89 ALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMKVGEI 148 Query: 94 LWFFATVHGLSEAHFKEKAAWLYRFSRLA---PFRTRRAGALSGGMKQKLALSCALLHNP 150 + VHG+ ++ K + + F R LSGG +Q++A++ AL NP Sbjct: 149 IGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIARALALNP 208 Query: 151 RLLILDEPTTGVDPLSRKEFWDMLDAL-RREGMGILISTPNLGEAEH-CDTVLFLHEGKI 208 ++L+LDEPT+ +D + + +L L ++ G+ L+ T ++ + +V+ ++ GKI Sbjct: 209 KILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMYSGKI 268 Query: 209 VLQGSPQQL 217 ++ +P+ + Sbjct: 269 -MESAPKHI 276 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 67.4 bits (163), Expect = 4e-13 Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 19/214 (8%) Query: 18 AVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEE----GIIQLPDEDHS----- 68 AVDG++F++ G ++G+ G G+GK+T ILGL P G I + D + Sbjct: 24 AVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTSMSEA 83 Query: 69 ------HWIKRHVGYMPERFSLYEDLTVEENLWFFATVH-GLSEAHFKEKAAWLYRFSRL 121 W K + + L TV + +H G+ +++ L L Sbjct: 84 ELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELLESVGL 143 Query: 122 -APFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDALRRE 180 R LSGG KQ++ ++ AL P ++I DEPTT +D + + + ++L L E Sbjct: 144 HRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLKKLAWE 203 Query: 181 -GMGILISTPNLGE-AEHCDTVLFLHEGKIVLQG 212 + I++ T +L AE +TV+ ++ GKI G Sbjct: 204 KNLSIILITHDLSVIAELAETVMIMYGGKIAEYG 237 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 62.0 bits (149), Expect = 2e-11 Identities = 62/218 (28%), Positives = 94/218 (43%), Gaps = 31/218 (14%) Query: 18 AVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQLPDEDHSHWIKRHVGY 77 A+DG+ V +G I+ ++G G GK+T R I + P +I E S + G Sbjct: 24 ALDGVELDVYQGEILAIVGESGCGKSTLARSIARI-LPSNAVI----EKGSIILNLGSGN 78 Query: 78 MPERFSLYEDLTVE--------------------ENLWFFATVHGLSEAHFKEKAAW--L 115 + L ED V+ + T H E EK A L Sbjct: 79 TVDLVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDHVSGEKRRVEKIAQEIL 138 Query: 116 YRFSRLAPFRT--RRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDM 173 + AP + LSGGMKQ++ ++ +L+ PR++I DEPTT +D + + M Sbjct: 139 KKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKM 198 Query: 174 LDALRRE-GMGILISTPNLG-EAEHCDTVLFLHEGKIV 209 L LR E I++ T NL AE D + ++ G +V Sbjct: 199 LSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVV 236 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 61.6 bits (148), Expect = 2e-11 Identities = 51/159 (32%), Positives = 72/159 (45%), Gaps = 24/159 (15%) Query: 16 RPAVDGITFSVDEG-----RIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQLPDEDHSHW 70 R A+DG T + EG ++G+ GP+G GKTT +R + G P EG + ED Sbjct: 365 RVALDGFTLTSGEGALYGGEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYVED---- 420 Query: 71 IKRHVGYMPERFS--LYEDLTVEENLWFFATVHGLSEAHFKEKAAW----LYRFSRLAPF 124 V Y P+ S D TVE+ V + +W L + RL Sbjct: 421 --LRVSYKPQYISPESLPDATVEQ-------VLKAANPAILAPGSWLNLELVKRMRLDKL 471 Query: 125 RTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVD 163 RR LSGG QK+A++ AL + +LDEP+ +D Sbjct: 472 LERRVRTLSGGELQKVAVAAALAREADVYLLDEPSAYLD 510 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 59.3 bits (142), Expect = 1e-10 Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 35/236 (14%) Query: 3 IVHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLD--------H 54 ++ G R R + + +V+ G + ++G GAGKTT +R+ILG Sbjct: 440 VLRAFGAERRVVERYVLKDVNITVNPGSVAAVVGASGAGKTTLLRMILGKALGIGGEGYR 499 Query: 55 PEEGIIQLPDEDHSHWIKRHVGYMP-ERFSLYEDLTVEENLWFF-----ATVHGLSEAHF 108 P+ G++++P + +P E + T+ E++ A V LS Sbjct: 500 PDSGVVKIPTNTKA------AALLPGELEPSFGGETLLEHVASKLGDPGAAVEVLSSVGL 553 Query: 109 KEKAAWLYRFSRLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRK 168 + A F G LS G K++ L+ L P LL++DE +DPL+ + Sbjct: 554 GD-----------AIFFRASFGELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLTAR 602 Query: 169 EFWDMLDAL-RREGMGILIST--PNLGEAEHCDTVLFLHEGKIVLQGSPQQLSRRL 221 L L R +G+ +++ST P + +A DTV+ + G Q P ++ R L Sbjct: 603 RIARKLGKLARSKGITLIVSTNRPEILDALQPDTVILVGYGS-AFQEEPGRVLREL 657 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 55.1 bits (131), Expect = 2e-09 Identities = 52/211 (24%), Positives = 102/211 (48%), Gaps = 23/211 (10%) Query: 12 TYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPEEGIIQLPDEDHSHWI 71 T +GR + +T S+ G + ++G +G+GKTT ++L L P+ G ++ P + Sbjct: 2 TVRGR--LRDVTLSIPRG-VTAILGANGSGKTTLLKLAARLLKPDRGSVEGPRRVGAALQ 58 Query: 72 KRHVGYMPERFSLYEDLTVEENLWFFATVHGLSEAHFKEKAAWLYRFSRLAPFRTRRAGA 131 ++G++ TV E+L T G EA + A L S +P+ Sbjct: 59 NPYLGFLGP--------TVAEDL--ARTAGGRGEALKLLREAGLEYASERSPY------T 102 Query: 132 LSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDALRREGMGILISTPNL 191 LS G + L++ A+ P +++DEPT+G+D ++ W + + R G+ +L++ ++ Sbjct: 103 LSMGEARILSVLMAISWGPEAVVIDEPTSGLDGSGKR--W-LASLIARLGVPVLVAGHDI 159 Query: 192 G-EAEHCDTVLFLHEGKIVLQGSPQQLSRRL 221 A + L +G++ + G +++ R L Sbjct: 160 DFAAAVAGWAVILRDGRVRVSGDMERVLRML 190 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 52.4 bits (124), Expect = 1e-08 Identities = 54/255 (21%), Positives = 108/255 (42%), Gaps = 55/255 (21%) Query: 4 VHVEGLRRTYQGRPAVDGITFSVDEGRIVGLIGPDGAGKTTTMRLILGLDHPE------- 56 + V+GL + ++ + F + G + ++GP+G+GK++ +I+G + E Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 57 ---EGIIQLPDEDHS------------------------HWIKRHVGYMPERFSLYEDLT 89 E I +LP E+ + ++ + +G + S D Sbjct: 63 LDGESIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLG--AQDLSKPADPK 120 Query: 90 VEENLWFFATVHGLSEAHFKEKAAWLYRFSRLAPFRTRRAGALSGGMKQKLALSCALLHN 149 + + ++ +AT GL + SGG K++ L A++ + Sbjct: 121 IVKRMYEYATKLGLDREILNREVNV----------------GFSGGEKKRSELLQAMIFD 164 Query: 150 PRLLILDEPTTGVDPLSRKEFWDMLDALRREGMGILIST--PNLGEAEHCDTVLFLHEGK 207 P+++ILDEP +G+D K + + LR G G+++ T L D V L+ G Sbjct: 165 PKIVILDEPDSGLDIDGLKIVAEFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGS 224 Query: 208 IVLQGSPQQLSRRLE 222 ++ +G +L+R++E Sbjct: 225 VLARGG-AELARQVE 238 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 50.8 bits (120), Expect = 4e-08 Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 9/185 (4%) Query: 1 MTIVHVEGLRRTYQGRPAV-DGITFSVDEGRIVGLIGPDGAGKTTTMRLILGL-DHPEEG 58 M++V + + Y G V G++ G I L GP G GK+T +R+ GL G Sbjct: 1 MSVVRLRDVWYRYPGGGWVLRGVSLEAPRG-ITLLAGPTGGGKSTILRVAAGLATRIYGG 59 Query: 59 IIQLPDEDHSHWIKRHVGYMPERFSLYE-DLTVEENLWFFATVHGLSEAHFKEKAAWLYR 117 ++ E + +P+ + L+ LT E L + GL + +A L Sbjct: 60 YLRGEVEARGKPV-----LVPQDYDLFILSLTPREELEYCYEASGLPPWEARREAVRLAE 114 Query: 118 FSRLAPFRTRRAGALSGGMKQKLALSCALLHNPRLLILDEPTTGVDPLSRKEFWDMLDAL 177 + RR LS G +Q++A++ AL +L++DEP DPL + +L L Sbjct: 115 ELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVESLIRLLRRL 174 Query: 178 RREGM 182 EG+ Sbjct: 175 DVEGV 179 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 343,544 Number of Sequences: 1700 Number of extensions: 16825 Number of successful extensions: 183 Number of sequences better than 1.0e-04: 41 Number of HSP's better than 0.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 72 Number of HSP's gapped (non-prelim): 52 length of query: 301 length of database: 492,079 effective HSP length: 76 effective length of query: 225 effective length of database: 362,879 effective search space: 81647775 effective search space used: 81647775 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719633|ref|YP_003875165.1| transporter [Spirochaeta thermophila DSM 6192] (249 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 160 4e-41 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 140 3e-35 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 139 9e-35 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 137 3e-34 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 125 1e-30 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 124 2e-30 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 119 9e-29 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 115 1e-27 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 115 1e-27 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 113 5e-27 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 110 3e-26 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 110 3e-26 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 106 5e-25 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 106 6e-25 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 102 1e-23 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 99 1e-22 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 98 2e-22 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 96 9e-22 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 90 5e-20 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 87 3e-19 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 87 5e-19 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 85 2e-18 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 84 4e-18 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 82 1e-17 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 82 2e-17 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 81 3e-17 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 80 6e-17 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 78 2e-16 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 78 2e-16 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 77 3e-16 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 75 2e-15 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 71 3e-14 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 70 7e-14 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 69 9e-14 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 68 2e-13 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 62 1e-11 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 57 3e-10 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 55 2e-09 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 53 6e-09 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 50 7e-08 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 160 bits (404), Expect = 4e-41 Identities = 89/221 (40%), Positives = 131/221 (59%), Gaps = 3/221 (1%) Query: 11 MIEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFV 70 M+ E LV+ +G F AV+ +SF +ARGE+F LLG NGAGKTTTI+M+ LL PT+G ++ Sbjct: 6 MVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWI 65 Query: 71 DGIPVHRQPRLARTRIGYLSQRFSLYEDLSPEENVRFFSALYRVEDTRTAHYLARLSSWL 130 G + R+P R IG + Q + +++S +NV + LY + + + +L Sbjct: 66 AGYSIVREPGNVRRVIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEARERTREVLDYL 125 Query: 131 G--EGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYRQSS 188 E A R V T G R+++ + +L+H P +L LDEPT G+D R+ W I Sbjct: 126 DLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLKR 185 Query: 189 KGKTILVTTHYMEEAE-YCHRVAIMHQGKVLVEGPPQEIMA 228 TIL+TTHYMEEAE RVAI+ +G+++ EG P+E+ A Sbjct: 186 SAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEELKA 226 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 140 bits (353), Expect = 3e-35 Identities = 89/229 (38%), Positives = 123/229 (53%), Gaps = 13/229 (5%) Query: 11 MIEVEGLVRRFGS-------FTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPP 63 MIE GLV+RF S A+ +SFSV GE++ LG NGAGKTTT+R++ LL P Sbjct: 5 MIEARGLVKRFVSGRIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDP 64 Query: 64 TAGRIFVDGIPVHRQPRLARTRIGY-LSQRFSLYEDLSPEENVRFFSALYRVEDTRTAHY 122 G V G V ++ R RIG LS Y L+ EN+ +F +Y + Sbjct: 65 DGGEARVAGFDVVKERWEVRKRIGVMLSVERGFYWKLTGRENLYYFGRIYGIPQGELKSR 124 Query: 123 LARLSSWLG----EGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQE 178 + + +G GA +P + LG + R+GL LL DP +LILDEPT G+DP + Sbjct: 125 IKEVLDLVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASART 184 Query: 179 FWEEIYRQSSKGKTILVTTHYMEEAE-YCHRVAIMHQGKVLVEGPPQEI 226 I +S+G+TI +TTH M EAE RV I+ G++ +EG P E+ Sbjct: 185 IRGVIRSLASEGRTIFITTHNMVEAEMISDRVGIIIGGRIAMEGTPDEL 233 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 139 bits (349), Expect = 9e-35 Identities = 83/242 (34%), Positives = 131/242 (54%), Gaps = 6/242 (2%) Query: 10 PMIEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIF 69 P +E EG+ +R G + +S +V RG V+G++G NGAGKTT R + GL GR+ Sbjct: 7 PAVEAEGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVA 66 Query: 70 VDGIPVHRQPRLARTRIGYLSQRFSLYEDLSPEENVRFFSALYRVEDTRTAHYLARLSSW 129 + G PV R R+ YL + Y +++ E +R ++++Y VED YL S Sbjct: 67 LLGEPVERAGGSLFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLEG--YLEEASRL 124 Query: 130 LGEGAR--RPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYRQS 187 G G R VR+ G R+R+ + L P L +LDEPT+G+DPV + S Sbjct: 125 SGLGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYS 184 Query: 188 SK-GKTILVTTHYMEEAE-YCHRVAIMHQGKVLVEGPPQEIMASSGTRTLQEAFIHLVSS 245 + G T+L+++H M E E C + ++ G+++ G P E + +G +L+EA++ LV+ Sbjct: 185 ERHGVTVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGEAVRRTGASSLEEAYVALVTG 244 Query: 246 GG 247 GG Sbjct: 245 GG 246 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 137 bits (345), Expect = 3e-34 Identities = 91/249 (36%), Positives = 135/249 (54%), Gaps = 17/249 (6%) Query: 12 IEVEGLVRRFG---------SFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLP 62 +E E LV+ + + A++ + V RG +F LLG NGAGKTT ++++ LL Sbjct: 5 VEAEALVKEYRMGLLPWRARTIRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLL 64 Query: 63 PTAGRIFVDGIPVHRQPRLARTRIGY-LSQRFSLYEDLSPEENVRFFSALYRVEDTRTAH 121 P +G V G V R+ R+RIG L +LY LS +N+ FFS LY + Sbjct: 65 PDSGWARVAGFDVVREANNVRSRIGVVLGGERALYWRLSGWDNLWFFSQLYGIPPREAKR 124 Query: 122 YLARLSSWLG--EGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEF 179 + L +G E A V G +QR+ + L++DP +L+LDEPT G+DP +E Sbjct: 125 RVKELLEIVGLEEWAHVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREV 184 Query: 180 WEEIYRQSSKGKTILVTTHYMEEA-EYCHRVAIMHQGKVLVEGPPQEIMASSGTRTLQEA 238 I R +G+T+L+TTHYM EA E RVAI+ +G+++ EGPP+++ + G E+ Sbjct: 185 RSIIRRIVREGRTVLLTTHYMVEAEELSDRVAIISKGRIVAEGPPEDLKSLVG----GES 240 Query: 239 FIHLVSSGG 247 I L GG Sbjct: 241 VIELKVMGG 249 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 125 bits (314), Expect = 1e-30 Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 11 MIEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFV 70 +IEVEGLV+R+GS A+ +SFSV GEVFG LG NGAGKTTTIR++ G PT+G V Sbjct: 4 VIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARV 63 Query: 71 DGIPVHRQPRL-ARTRIGYLSQRFSLYEDLSPEENVRFFSALYRVEDTRTAHYLARLSSW 129 G+ ++ R R+GY+ F Y +S R R+ + + L Sbjct: 64 FGVELYNPGASGVRRRVGYVPGEFEFYGGVS---GGRMLDYWCRLVGGCSRGVVRELLEA 120 Query: 130 LGEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYRQSSK 189 R V T G +Q + L+ A H+P L+++DEPT+G+DP+ R + + ++ + Sbjct: 121 FPLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDFVRSKARE 180 Query: 190 GKTILVTTHYMEEAE-YCHRVAIMHQGKVLVEGPPQEIMASSG 231 G T+ ++H + E + RV ++ G ++ ++ SG Sbjct: 181 GVTVFFSSHVLSEVQRVADRVGLLRSGVLVALEDVSSLLRKSG 223 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 124 bits (312), Expect = 2e-30 Identities = 82/225 (36%), Positives = 123/225 (54%), Gaps = 10/225 (4%) Query: 30 ISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFVDGI-PVHRQPRLARTRIGY 88 +S SV GE+ L G NGAGKTT++R++ GLL +G V G+ P + +GY Sbjct: 33 VSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVDPWGGGFERVKGEVGY 92 Query: 89 LSQRFSLYEDLSPEENVRFFSALYR----VED-TRTAHYLARLSSWLGEGARRPVRTLPL 143 L + S+YE L+ EN+ F++ LY VE+ A + + LS E R Sbjct: 93 LPEDASVYERLTGMENILFYARLYSGWRDVEELVENAVFYSGLSR---EDLARRAGGYSK 149 Query: 144 GFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYRQSSKGKTILVTTHYMEEA 203 G ++R+ L L+ P L++LDEPTSGVDP+ + + S +G+ ILVTTH + A Sbjct: 150 GMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSREGRAILVTTHDLALA 209 Query: 204 -EYCHRVAIMHQGKVLVEGPPQEIMASSGTRTLQEAFIHLVSSGG 247 E RV I+H G + GPP ++ TL++AF+++V+ GG Sbjct: 210 EEIADRVTIIHGGSTVASGPPYRLVEEYCGETLEDAFVNIVTGGG 254 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 119 bits (297), Expect = 9e-29 Identities = 78/220 (35%), Positives = 120/220 (54%), Gaps = 5/220 (2%) Query: 12 IEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFVD 71 +E GL +RFG TAV +SFSV GE ++G NG+GKTT +RM+ G+L P+ G + V Sbjct: 5 VEARGLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVC 64 Query: 72 GIPVHRQP-RLARTRIGYLSQRFSLYEDLSPEENVRFFSALYRVEDTRTAHYLARLSSWL 130 G V R AR IG+ Q + ++ E + L + R+ L Sbjct: 65 GYDVWGDGWREARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREARRVLEML 124 Query: 131 G--EGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYRQSS 188 G + R V L G R+ +G+ AL +P +++LDEP SG+D R+ W + R++ Sbjct: 125 GFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASL-RKAF 183 Query: 189 KGKTILVTTHYMEEAE-YCHRVAIMHQGKVLVEGPPQEIM 227 KG+T+L ++H +EAE RV IMH+G++ G P+E++ Sbjct: 184 KGRTVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPRELI 223 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 115 bits (288), Expect = 1e-27 Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 12/230 (5%) Query: 11 MIEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFV 70 ++EV GLV + + + S++ GE ++G +G+GK+T ++ I L+ P +G I Sbjct: 4 LLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVF 63 Query: 71 DGIPVHR----QPRLARTRIGYLSQRFSLYEDLSPEENVRF-----FSALYRVEDTRTAH 121 G+ V R Q R+ R +IGYL Q +SL+ ++ N+ + R + R Sbjct: 64 RGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAEERAVK 123 Query: 122 YLARLSSWLGEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWE 181 YL+ L + + A R L G +QR L AL +P +L+LDEPTS +DP R + E Sbjct: 124 YLSMLG--IEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLE 181 Query: 182 EIYRQSSKGKTILVTTHYMEEA-EYCHRVAIMHQGKVLVEGPPQEIMASS 230 ++R ++ GK ++V TH + A + R+A M G V EG P E++ S Sbjct: 182 ALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSELVEGS 231 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 115 bits (287), Expect = 1e-27 Identities = 77/231 (33%), Positives = 121/231 (52%), Gaps = 13/231 (5%) Query: 12 IEVEGLVRRFGS----FTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGR 67 + VEG+V+ + S A+ +S SVARGEV ++G +G+GKTT + +I G+ P AGR Sbjct: 11 VVVEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGR 70 Query: 68 IFVDGIPV-----HRQPRLARTRIGYLSQRFSLYEDLSPEENVRFFSALY-RVEDTRTAH 121 + VDG V R R+GY+ Q+ +L L+ EN+ AL + R Sbjct: 71 VIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIPTLTALENILLPMALAGKANRLRGQE 130 Query: 122 YLARLSSWLGEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWE 181 L R+ LG RR L G +QR+ + AL +DPP+++ DEPT +D + Sbjct: 131 LLRRVG--LGGKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVR 188 Query: 182 EIYRQS-SKGKTILVTTHYMEEAEYCHRVAIMHQGKVLVEGPPQEIMASSG 231 + ++ S+GKT+++TTH A RVA++ G++ P I ++G Sbjct: 189 ILLEEAHSRGKTVVLTTHDPRVARMADRVAVIEDGRLRGVYSPSRIAGATG 239 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 113 bits (282), Expect = 5e-27 Identities = 76/226 (33%), Positives = 119/226 (52%), Gaps = 7/226 (3%) Query: 12 IEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFVD 71 I +E + +RFG+ A++R+S +++ GE+F LLG +G GKTTT+R+I G P GR+++ Sbjct: 4 IRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIG 63 Query: 72 GIPVHRQPRLARTRIGYLSQRFSLYEDLSPEENVRF---FSALYRVEDTRTAHYLARLSS 128 V R + Q ++L+ + +N+ + L R E R + A L Sbjct: 64 SRDVTMLKPYER-NTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWAAELLE 122 Query: 129 WLGEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYR-QS 187 + R L G +QRV + A++ +P +L++DEP S +D R + EEI R Q Sbjct: 123 -IDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQK 181 Query: 188 SKGKTILVTTHYMEEA-EYCHRVAIMHQGKVLVEGPPQEIMASSGT 232 G TI+ TH EEA HRVA+M++G+V G P E+ T Sbjct: 182 RLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVYEKPAT 227 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 110 bits (275), Expect = 3e-26 Identities = 73/248 (29%), Positives = 122/248 (49%), Gaps = 29/248 (11%) Query: 11 MIEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIF- 69 M+ E + RFG TA++ +S V RGE+ G++G NGAGKT+ + +I G+ P GR++ Sbjct: 1 MLWTENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYF 60 Query: 70 ----VDGIPVHRQPRLARTRIGYLSQRFSLYEDLSPEENV------------------RF 107 + G+ H++ L +R Q L+ ++ EN+ F Sbjct: 61 KGRDITGLKPHQRITLGLSR---TFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAF 117 Query: 108 FSALYRVEDTRTAHYLARLSSWLGEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEP 167 + + VE A ++ L L E P+ LP G +++V L AL +P ++++DEP Sbjct: 118 RAKRWEVEARERAEHVIDLLD-LHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEP 176 Query: 168 TSGVDPVGRQEFWEEIYRQS-SKGKTILVTTHYME-EAEYCHRVAIMHQGKVLVEGPPQE 225 +G+ +++ I S + T+++ H ME + C RV +M GKV+ EGPP E Sbjct: 177 MAGLSKEEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHE 236 Query: 226 IMASSGTR 233 +A R Sbjct: 237 AVADERVR 244 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 110 bits (275), Expect = 3e-26 Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 11/224 (4%) Query: 12 IEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFVD 71 I +EG+V+RFG AV+ + S+ GE F LLG +G GKTTT+R+I GL P GRI +D Sbjct: 4 IRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILID 63 Query: 72 GIPV-HRQPRLARTRIGYLSQRFSLYEDLSPEENVRFFSALYRVEDTRTAHYLARLSSWL 130 G V + P+ + + Q ++LY +S +N+ F L R E T + R + Sbjct: 64 GEDVTFKDPK--DRNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIEV 121 Query: 131 GEGAR------RPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEI- 183 + R R L G +QRV L AL+ P + ++DEP S +D + R E+ Sbjct: 122 AKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELK 181 Query: 184 -YRQSSKGKTILVTTHYMEEAEYCHRVAIMHQGKVLVEGPPQEI 226 ++ K T+ VT E R+A+M++G+V+ G P+E+ Sbjct: 182 KLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEV 225 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 106 bits (265), Expect = 5e-25 Identities = 68/228 (29%), Positives = 122/228 (53%), Gaps = 5/228 (2%) Query: 11 MIEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFV 70 ++E G+V+++ ++R+ V RGE GL+G NGAGKTT I++ GL GR+ + Sbjct: 4 VLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLL 63 Query: 71 DGIPVHRQPRLARTRIGYLSQRFSLYEDLSPEENVRFFSALYRVEDTRTAHYLARLSSWL 130 +G+ R+PR AR +G + +R +L + E + +A+ +R + R + Sbjct: 64 NGLDPWREPR-AREGVGVVFERPNLPSSMPVVEFLESAAAIIGSSPSR-VDWAIRAAGLE 121 Query: 131 GEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYRQSSK- 189 G + L G +QR + ALL +P L+ DEPTS +DP+ R+E + R + + Sbjct: 122 GH-EWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLNREH 180 Query: 190 GKTILVTTHYMEE-AEYCHRVAIMHQGKVLVEGPPQEIMASSGTRTLQ 236 G ++LV++H + E R+ ++ G++ EG P+++ +G L+ Sbjct: 181 GLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDLFRRAGLARLR 228 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 106 bits (264), Expect = 6e-25 Identities = 71/225 (31%), Positives = 114/225 (50%), Gaps = 7/225 (3%) Query: 11 MIEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFV 70 +++V + +RFG A+ +SFSV RGE GL+G NGAGKTT +I G+ P GR+ Sbjct: 4 ILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIY 63 Query: 71 DGIPVHRQPRLARTRIGYLSQRFSLYEDLS--PEENVRFFSALYRVEDTRTAHYLA-RLS 127 G+ + P R+R G +++ F + L+ N AL R D R A A Sbjct: 64 KGVDITGWPAYRRSRAG-IARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAMEAI 122 Query: 128 SWLGEGARRPV--RTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYR 185 +G + + + L L ++R+ L AL P LL+LDE +G+ P + + Sbjct: 123 DMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLE 182 Query: 186 QSSKGKTILVTTHYMEEA-EYCHRVAIMHQGKVLVEGPPQEIMAS 229 S +G TI++ H M + RV ++H G+ + EG P+E+ ++ Sbjct: 183 ISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVASN 227 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 102 bits (253), Expect = 1e-23 Identities = 70/220 (31%), Positives = 113/220 (51%), Gaps = 7/220 (3%) Query: 12 IEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFVD 71 + +EG+V+RFG A+ I + GE LLG +G GKTTT+R++ GL P AGR++ D Sbjct: 4 VRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFD 63 Query: 72 GIPVHRQPRLARTRIGYLSQRFSLYEDLSPEENVRF---FSALYRVEDTRTAHYLARLSS 128 G V P R + + Q ++L+ + +N+ F L R E R + A L Sbjct: 64 GRDVTGLPPKDR-NVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAAELLE 122 Query: 129 WLGEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYR-QS 187 + R L G +QRV + A++ +P +L++DEP S +D + R + EI + Q Sbjct: 123 -IDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKLQR 181 Query: 188 SKGKTILVTTHYMEEAEYC-HRVAIMHQGKVLVEGPPQEI 226 G T++ TH EA R+ +M+ G++ G P ++ Sbjct: 182 RLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDV 221 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 98.6 bits (244), Expect = 1e-22 Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 8/222 (3%) Query: 12 IEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFVD 71 + ++ + +G A+ +SFS + +LG +G GKTT +++I GLL P GR+F Sbjct: 6 VRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFG 65 Query: 72 GIPVHRQPRLARTRIGYLSQRFSLYEDLSPEENVRFFSALYRVEDTRTAHYLARLSSWLG 131 G+ P R +G++ Q +L+ ++ +NV F + +G Sbjct: 66 GVDYTGLPP-ERRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWALETVG 124 Query: 132 -----EGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYR- 185 E R V L G +QRV L A+ ++PP+L+LDEP S +D RQ E+ R Sbjct: 125 LTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRL 184 Query: 186 QSSKGKTILVTTHYMEEA-EYCHRVAIMHQGKVLVEGPPQEI 226 Q G T++ TH EA E + IM G+++ G P E+ Sbjct: 185 QRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEV 226 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 97.8 bits (242), Expect = 2e-22 Identities = 73/214 (34%), Positives = 114/214 (53%), Gaps = 10/214 (4%) Query: 12 IEVEGLVRRF-GSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFV 70 + + G+V+ + A++ + F++ GEV LLG NGAGKTT +R++ G + PT G I+V Sbjct: 13 VAMRGIVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYV 72 Query: 71 DGIPVH-RQPRLA-RTRIGYLSQRFSLYEDLSPEENVRFFSA---LYRVE-DTRTAHYLA 124 G V R P A R I + Q+F L E ++ EEN+ + + L R E RT Sbjct: 73 WGRKVSWRGPWDAIRNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRTLETAE 132 Query: 125 RLSSWLGEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIY 184 RL L + V LP+G RQRV ++ AL +LILDEPTS + P+ ++ + + Sbjct: 133 RLG--LEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLR 190 Query: 185 RQSSKGKTILVTTHYM-EEAEYCHRVAIMHQGKV 217 G +++ TH + E RV ++ +G+V Sbjct: 191 LLKDMGVSVVYITHKLGEVVRVADRVTVLRRGRV 224 Score = 52.4 bits (124), Expect = 1e-08 Identities = 57/218 (26%), Positives = 88/218 (40%), Gaps = 12/218 (5%) Query: 11 MIEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFV 70 ++ V G+ V +S V GE+ G+ G G G+ + I GL P G I V Sbjct: 262 LLSVRGVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEV 321 Query: 71 DGIPVHRQPRLARTRIGYLS--QRFSLYEDLSPEENVRFF----SALYRVEDTRTAHYLA 124 G + R GY++ + L D S EN+ F S + +R Sbjct: 322 QGRRIEGSLDFYRAGGGYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRRSRLEDLFR 381 Query: 125 RLSSWLGEGARRP---VRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWE 181 RL AR P V L G +Q+V + +L LL+ PT G+D + F Sbjct: 382 RLVERFRLVARSPWTPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLD-IATTSFVR 440 Query: 182 EIYRQSSK--GKTILVTTHYMEEAEYCHRVAIMHQGKV 217 + + ++ +LV+T E E R+ +M G+V Sbjct: 441 NLLSELARQGAGILLVSTDLDEILELSDRIYVMSGGRV 478 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 95.9 bits (237), Expect = 9e-22 Identities = 69/220 (31%), Positives = 115/220 (52%), Gaps = 7/220 (3%) Query: 12 IEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFVD 71 +++EG+ + FG+ AV ++ + E +LG +G+GKTT + +I G+ P+ GRI+ + Sbjct: 4 VKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFN 63 Query: 72 GIPVHRQPRLARTRIGYLSQRFSLYEDLSPEENVRFFSALYRVEDTRTAHYLARLSSWLG 131 + V P R IG + Q ++LY ++ EN+ F L + + ++ LG Sbjct: 64 DVDVTDLPPNKR-NIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVAKLLG 122 Query: 132 -EGA--RRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYR-QS 187 EG R P + L G +QRV L AL+ +P +L+LDEP S +D + R + E+ + Q Sbjct: 123 IEGLLDRYPAQ-LSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQK 181 Query: 188 SKGKTILVTTHYMEEA-EYCHRVAIMHQGKVLVEGPPQEI 226 G T + TH EA R+AI+ G + G P ++ Sbjct: 182 ELGITAIYVTHDQSEALAMADRIAIIASGVIQQVGKPWDV 221 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 90.1 bits (222), Expect = 5e-20 Identities = 69/237 (29%), Positives = 110/237 (46%), Gaps = 20/237 (8%) Query: 11 MIEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIF- 69 ++ VE L +RFG A+++++ + RG+V L+G NG+GKTT + +I G P GR+ Sbjct: 6 ILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLF 65 Query: 70 ----VDGIPVHRQPRLARTRIGYLSQRFSLYEDL--------SPEENVRFFSALYRV--- 114 + G+ H +L R + + F+ L SP ENV R+ Sbjct: 66 KGRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWLG 125 Query: 115 EDTRTAHYLARLSSWLGEGARRPVRT--LPLGFRQRVGLMCALLHDPPLLILDEPTSGVD 172 + R A + W+G R+ L G + + + A++ ++I+DEP +GV+ Sbjct: 126 FEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVN 185 Query: 173 PVGRQEFWEEI-YRQSSKGKTILVTTHYME-EAEYCHRVAIMHQGKVLVEGPPQEIM 227 P E I Y KG T L+ H + EY RV M GKV+ G P E++ Sbjct: 186 PRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEVL 242 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 87.4 bits (215), Expect = 3e-19 Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 6/219 (2%) Query: 12 IEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFVD 71 + VE L + ++ ++ + ++G NGAGKTT ++ I GL+ P GR+F+D Sbjct: 3 VRVEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLD 62 Query: 72 GIPVHRQPRLARTRIGYLSQRFSLYEDLSPEENVRFFSALYRVED-TRTAHYLARLSSWL 130 G +P + GY+ Q S LSP F R+ TR + L Sbjct: 63 GFEATGRPEMVGRYAGYVPQNPSA-PKLSPMTVREFVETSLRLRGVTRARERAVEVLHTL 121 Query: 131 ---GEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYRQS 187 GE + L +G QRV + A+ DP +L++DEP + VDP GR E I Sbjct: 122 GIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEI-ARIIAGL 180 Query: 188 SKGKTILVTTHYMEEAEYCHRVAIMHQGKVLVEGPPQEI 226 ++ + +L+T+H + ++ ++ GPP+E+ Sbjct: 181 ARERLVLMTSHDPSLLLGHTDIIVVINRDLIASGPPEEV 219 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 86.7 bits (213), Expect = 5e-19 Identities = 73/233 (31%), Positives = 110/233 (47%), Gaps = 21/233 (9%) Query: 12 IEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFVD 71 + L +RFG A + F+ G + G+LG NGAGKTT ++ I GL+ P+AG I V+ Sbjct: 5 VNASALSKRFGQRYAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVE 63 Query: 72 GIPVHRQPRLAR--TRIGYLSQ---------RFSLYEDLSPEENVRFFSALYRVEDTRTA 120 G+ R P + RIGY+ + L E L+ E A R + Sbjct: 64 GVN-PRSPGFEKLLPRIGYVPELPVVPLWTTPCILLETLARLEGYTSVEARVRAREALEV 122 Query: 121 HYLARLSSWLGEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFW 180 LA GE P+ L G R+RV + A + + LL+LDEP SG+DP Sbjct: 123 VGLA------GE-CETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVR 175 Query: 181 EEIYRQSSKGKTILVTTHYMEEAEYCHRVAIMHQGKVLVEGPPQEIMA-SSGT 232 E + + +G T++V++H + E E ++ + L G +E+ A SGT Sbjct: 176 ELLRTVAREGATVIVSSHILRELEDIATHVLVLKTDQLFYGSIEELRAWLSGT 228 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 84.7 bits (208), Expect = 2e-18 Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 6/223 (2%) Query: 10 PMIEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIF 69 P++EV+ + +G F A+ +S V +GE+ LLG NGAGKTTT+ I GLL P G I Sbjct: 5 PLLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSII 64 Query: 70 VDGIPVHRQPRLARTR--IGYLSQRFSLYEDLSPEENVRFFSALYRVED--TRTAHYLAR 125 G + P R I ++ + ++ L+ EN+R ++ R ++ + + Sbjct: 65 WQGRDITGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRVAASTRRAKEHFQDSLEQVYT 124 Query: 126 LSSWLGEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDP-VGRQEFWEEIY 184 + L + TL G +Q + + AL+ P LL++DEP+ G+ P + R + Sbjct: 125 IFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLASR 184 Query: 185 RQSSKGKTILVTTHYME-EAEYCHRVAIMHQGKVLVEGPPQEI 226 + G TIL+ + + R +M G++++EG E+ Sbjct: 185 LREELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDEL 227 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 83.6 bits (205), Expect = 4e-18 Identities = 77/260 (29%), Positives = 116/260 (44%), Gaps = 51/260 (19%) Query: 10 PMIEVEGLVRRF----GSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTA 65 P+IEVE L F G A+ +SF + RGE + L+G G GK+ T R + L+ P Sbjct: 8 PIIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYP-P 66 Query: 66 GRIFVDGIPVHRQP---------------RLARTRIGYLSQRFSLYEDLSPEENVRFFSA 110 GRI I + +P R+ I Y+ Q S D ++ Sbjct: 67 GRIVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALD-------PLYTI 119 Query: 111 LYRVEDTRTAHYLARLSSWLGEGARRPVRTLPL-------------------GFRQRVGL 151 Y+V +T AH R L EG RR V L G +QR + Sbjct: 120 GYQVGETMLAHGRVRS---LREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVI 176 Query: 152 MCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYR-QSSKGKTILVTTHYME-EAEYCHRV 209 +L + P LLI DEPT+ +D + + + + + + G T+L+ TH + AEYC RV Sbjct: 177 GISLSNRPKLLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRV 236 Query: 210 AIMHQGKVLVEGPPQEIMAS 229 A+M+ G ++ E P E+ ++ Sbjct: 237 AVMYAGNIVEEAPVDELFSN 256 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 82.4 bits (202), Expect = 1e-17 Identities = 65/230 (28%), Positives = 114/230 (49%), Gaps = 17/230 (7%) Query: 10 PMIEVEGLVRRFGSFTAV-NRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRI 68 P++ V + + F V +S SV +G + L+G NGAGKTT ++ + G++ GR+ Sbjct: 3 PLLNVSNVEIMYHPFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRV 62 Query: 69 FVDGIPV------HRQP-RLARTRIGYLSQRFSLYEDLSPEEN---VRFFSALYRVEDTR 118 I + +R+P +AR + Y+ + ++++L+ EEN V + + R + Sbjct: 63 TRGSIQLEGEDITNREPDEIARRGVIYVMEGRRIFKELTTEENLVSVAYAAGASRDDIRS 122 Query: 119 TAHYLARLSSWLGEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQE 178 Y RL LGE A L G +Q + + ALL+ P LL+LDEP+ G+ P + Sbjct: 123 VLSYFPRLKERLGEKA----GNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQ 178 Query: 179 FWEEI-YRQSSKGKTILVTTHYMEEA-EYCHRVAIMHQGKVLVEGPPQEI 226 + I +G TIL+ +A E ++ G++++EG +E+ Sbjct: 179 IYATIKMLHREEGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEEL 228 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 81.6 bits (200), Expect = 2e-17 Identities = 60/196 (30%), Positives = 98/196 (50%), Gaps = 15/196 (7%) Query: 11 MIEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFV 70 ++ +E + + G + +S ++ GE + GANG+GKTT +R+ GL P+ GR+ Sbjct: 4 LLRLENVWKMLGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRV-- 61 Query: 71 DGIPVHRQPRLARTRIGYLSQRFSLYEDLSPEENVRFFSALYRVEDTRTAHYLARLSSW- 129 PR R +GY+ +Y DL+ ENV FFS+L+ Y +W Sbjct: 62 ----SWGCPRGPRGCVGYVGHTPMVYGDLTVWENVEFFSSLH---GGSLGDYPLAAEAWR 114 Query: 130 ---LGEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYRQ 186 L + L G+R+R+ ++ ALL +P LL+LDE +G+D G E + R Sbjct: 115 LLGLEKYGSHLASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQ-GASEALSRLLRL 173 Query: 187 S-SKGKTILVTTHYME 201 + +G +L+TT +E Sbjct: 174 ALGEGLALLMTTPLLE 189 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 80.9 bits (198), Expect = 3e-17 Identities = 69/213 (32%), Positives = 100/213 (46%), Gaps = 15/213 (7%) Query: 22 GSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFVDGIPVHRQPRL 81 G A+ ++ S G V LLG NGAGKTT ++ I G++ P GRI VDG + + Sbjct: 16 GGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPKGPG 75 Query: 82 ARTRIG-YLSQR-------FSLYEDLSPEENVRFFSALYRVEDTRTAHYLARLSSWLGEG 133 R G Y++ + YEDL+ V A R T LA S LG Sbjct: 76 DSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQART----MLAEASEALGLN 131 Query: 134 ARRPVRTLPLGF--RQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYRQSSKGK 191 +GF RQR+ ++ AL ++LDEPT+ + P E R ++ G Sbjct: 132 IDPDRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAASGA 191 Query: 192 TILVTTHYMEEA-EYCHRVAIMHQGKVLVEGPP 223 +L+ TH + EA E+ R+ I+ +G + EGPP Sbjct: 192 AVLLVTHRIGEAMEHADRLVILRKGVKVYEGPP 224 Score = 62.8 bits (151), Expect = 8e-12 Identities = 60/203 (29%), Positives = 90/203 (44%), Gaps = 18/203 (8%) Query: 34 VARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFVDGIPVHRQPRLARTRIGY-LSQR 92 V +GEV G+ G G G+ +I GL P GRI + G+ V R P LAR R+G + Sbjct: 277 VRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRLGLGVIPE 336 Query: 93 FSLYEDLSPEENVRFFSAL--YRVED---------TRTAHYLARLSSWLGEGARRPVRTL 141 L L P E++ F AL + D + A + R R+ V L Sbjct: 337 ERLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGIKAVSPRQMVDEL 396 Query: 142 PLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYRQSSKGKTILVTTHYME 201 G QR+ L L P LL+ P +G+D G+Q E + S +G +++ E Sbjct: 397 SGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRMSSERGGVLVID----E 452 Query: 202 EAEYCHRVA--IMHQGKVLVEGP 222 + ++ RV+ I +V+GP Sbjct: 453 DLDFLLRVSNKIYVASGGIVKGP 475 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 79.7 bits (195), Expect = 6e-17 Identities = 55/226 (24%), Positives = 108/226 (47%), Gaps = 12/226 (5%) Query: 11 MIEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFV 70 +I++E + +G + +S + RG + ++G NGAGK+T ++ + G GR+ Sbjct: 5 IIKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLF 64 Query: 71 DGIPVHRQPRLARTRIG--YLSQRFSLYEDLSPEENVRFF-----SALYRVEDTRTAHYL 123 + V P R +IG ++ Q +++ +L+ EN+R ++R Sbjct: 65 ENTDVTHMPPHDRAKIGMTFIFQLENIFRELTVYENLRLAGYDLPEDVFRDRLEEVFSMF 124 Query: 124 ARLSSWLGEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEI 183 RL LG+ A TL G RQ + + ++ P + ++DEPT+G+ P +E + Sbjct: 125 PRLKERLGQKA----GTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYV 180 Query: 184 YRQSSKGKT-ILVTTHYMEEAEYCHRVAIMHQGKVLVEGPPQEIMA 228 + +G T +LV + E + ++ G++ +GP +E++A Sbjct: 181 RILNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDGPAEELLA 226 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 78.2 bits (191), Expect = 2e-16 Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 12 IEVEGLVRRFGSFTAVNR-ISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFV 70 + +EG+ R+ + V R +SFS+ G + LLG NG+GKTT +R++ G++ P+ GR+ V Sbjct: 6 VRLEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEV 65 Query: 71 DGIPVHRQPRLARTRIGYLSQRFSLYEDLSPEENVRFFSALYRVEDTRTAHY-------- 122 G P P R +GY ++ P + LYR + + Sbjct: 66 CGSP----PGRVRRMLGYAPAS----PEVDPRLKAVEVALLYRYGVSEGVAWGRRDWEEV 117 Query: 123 LARLSSW-LGEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWE 181 LA L +GE A R L G R+ V L L P L +LDEP S +D V Sbjct: 118 LAALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLD-VSNMRRVT 176 Query: 182 EIYRQSSKGKTILVTTHYMEEAEYCHRVAIMHQGKVLVEGPPQEIMASSGTRTLQEAF 239 + R TI+ TTH A V ++ +G + +GPP+ ++ T++E + Sbjct: 177 LVLRSLRGRATIVYTTHDPLAAMAADSVIMLREGLLHAQGPPEAVVT---PETIEEVY 231 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 77.8 bits (190), Expect = 2e-16 Identities = 69/236 (29%), Positives = 106/236 (44%), Gaps = 34/236 (14%) Query: 26 AVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFV--------------- 70 AV+ +SFS+ARGEVF L+G +G GKTTT + I L+ T GR+F Sbjct: 49 AVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERRGV 108 Query: 71 ----DGI------------PVHRQPRLA-RTRIGYLSQRFSLYEDLSPEENVRFFSALYR 113 DG P+ R+ ++ + G L+ RF++ L + Sbjct: 109 KSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNARE 168 Query: 114 VEDTRTAHYLARLSSWLGEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDP 173 E+ A + + R L G RQRV + A + +P L++ DEP S +D Sbjct: 169 REEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSMLDV 228 Query: 174 VGRQEFWEEIYRQSSK-GKTILVTTHYMEEAEY-CHRVAIMHQGKVLVEGPPQEIM 227 R E E + K G ++L TH + A Y C R+A+M+ GK++ G + I+ Sbjct: 229 SIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDARRII 284 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 77.4 bits (189), Expect = 3e-16 Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 25/231 (10%) Query: 12 IEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICG--LLPPTAGRIF 69 +EV+GL + G +N++ F + GEV ++G NG+GK++ +I G + G I Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 70 VDGIPVHRQPRLARTRIGYLSQRFSLYEDLSPEENVRFFSA-------------LYRVED 116 +DG + P R G F +D VR S L + D Sbjct: 63 LDGESIKELPPEERALKGI----FMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPAD 118 Query: 117 TRTAHYLARLSSWLGEGARRPVRTLPLGF----RQRVGLMCALLHDPPLLILDEPTSGVD 172 + + ++ LG R + +GF ++R L+ A++ DP ++ILDEP SG+D Sbjct: 119 PKIVKRMYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLD 178 Query: 173 PVGRQEFWEEIYRQSSKGKTILVTTHYMEEAEYCH--RVAIMHQGKVLVEG 221 G + E I + G+ +++ THY + RV ++++G VL G Sbjct: 179 IDGLKIVAEFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGSVLARG 229 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 74.7 bits (182), Expect = 2e-15 Identities = 64/223 (28%), Positives = 104/223 (46%), Gaps = 18/223 (8%) Query: 22 GSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPP----TAGRIFVDGIPVHR 77 G AV+ +SF++ RGEV G+ G +G+GK+T I GL+PP GRI +DG+ V Sbjct: 20 GIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVTS 79 Query: 78 QPRLARTRIGYLSQRFSLYED----LSP--------EENVRFFSALYRVEDTRTAHYLAR 125 R + +++ L+P EE ++ + R E + + L Sbjct: 80 MSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELLE 139 Query: 126 LSSWLGEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYR 185 A R L G +QRV + AL +P ++I DEPT+ +D V + + + + Sbjct: 140 SVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLKK 199 Query: 186 QS-SKGKTILVTTHYMEE-AEYCHRVAIMHQGKVLVEGPPQEI 226 + K +I++ TH + AE V IM+ GK+ GP + Sbjct: 200 LAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEYGPSDAV 242 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 70.9 bits (172), Expect = 3e-14 Identities = 62/233 (26%), Positives = 110/233 (47%), Gaps = 32/233 (13%) Query: 22 GSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPP----TAGRIFVDGIPV-- 75 G AV+ +S SV +GE ++G +G+GK+T I L+ P GRI G+ + Sbjct: 18 GIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRILYSGVDLLS 77 Query: 76 ---HRQPRLARTRIGYLSQRFSLYEDLSPEENVRFFSALYRVEDTRTAHYLARLSSWLGE 132 R IG + Q + Y L P V ++ ++ H LA S Sbjct: 78 LAGEELRRYRGREIGMVFQDPTAY--LDPYRTVGS-----QIAESLLEHGLASSGSEAES 130 Query: 133 GARRPVRTLPL--------------GFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQE 178 A + + + G RQRV + A+ +P +LI DEPT+ +D V + + Sbjct: 131 MAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAK 190 Query: 179 FWEEIYR-QSSKGKTILVTTHYME-EAEYCHRVAIMHQGKVLVEGPPQEIMAS 229 + + + Q +G T+++ TH + AEY R+A+M+ G+++ GP ++++++ Sbjct: 191 IMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDVVSN 243 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 69.7 bits (169), Expect = 7e-14 Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 16/214 (7%) Query: 30 ISFSVARGEVFGLLGANGAGKTTTIRMICGLLP--PTA---GRIFVDGIPVHRQ-PRLAR 83 ISF G V ++G +G+GK+T IR+I L+ P A G ++++ + V ++ P R Sbjct: 24 ISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVMKEDPYNIR 83 Query: 84 TRIGYLSQRFSLYEDLSPEENVRFFSALYRV--------EDTRTAHYLARLSSWLGEGAR 135 G + Q + + ++ ENV L+ + E A +A L + + Sbjct: 84 RYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEIVEWALKMAHLWDEVKDRLS 143 Query: 136 RPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEI--YRQSSKGKTI 193 L G RQR+ L AL P +L+LDEPT+ +DPV + + I Y + I Sbjct: 144 DYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKEEMATVI 203 Query: 194 LVTTHYMEEAEYCHRVAIMHQGKVLVEGPPQEIM 227 +VT + A ++ +++G+V+ GP +E++ Sbjct: 204 IVTHTPQQAARISDQILFLYEGRVIEYGPTKELV 237 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 69.3 bits (168), Expect = 9e-14 Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 15/214 (7%) Query: 26 AVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFVDGIPV----HRQPRL 81 AV+ ++ + RG+ GL+G +G+GKTT R+I L PT GRIF DGI V R + Sbjct: 51 AVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGLKE 110 Query: 82 ARTRIGYLSQRFSLYEDLSPEENVRFFSA----LYRVEDTRTAHYLARLSSWLGEGARRP 137 R R + Q Y L+P + + A ++ ++ Y+ L +G Sbjct: 111 FRRRAQIIFQ--DPYGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQVGLNETHL 168 Query: 138 VR---TLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIY-RQSSKGKTI 193 R G RQR+ + L P ++LDEPTS +D + + + Q T Sbjct: 169 YRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTY 228 Query: 194 LVTTHYMEEAEY-CHRVAIMHQGKVLVEGPPQEI 226 L +H + Y +A+M+ GK++ G +E+ Sbjct: 229 LFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEV 262 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 68.2 bits (165), Expect = 2e-13 Identities = 63/226 (27%), Positives = 97/226 (42%), Gaps = 34/226 (15%) Query: 26 AVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFVDG--IPVHRQPRLAR 83 AV+ + + GEV ++G +G GKTT + I G+ P+ G I+ G + HR R R Sbjct: 37 AVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARDRR 96 Query: 84 TRIGYLSQRFSLYEDLSPEENVRFFSALYRVEDTRTAHYLARLSSWLGEGARRPV----- 138 R Y+ L P +V + H LAR GE ARR Sbjct: 97 LRRKLQMVFQDPYKSLDP-----LMPVGDQVAEPLVIHGLAR-----GEEARRRAVEMLE 146 Query: 139 ---------------RTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEI 183 L G RQRV + L+ +P +++ DEP S +D R + I Sbjct: 147 TVGLTPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLI 206 Query: 184 YRQSSK-GKTILVTTHYMEEAE-YCHRVAIMHQGKVLVEGPPQEIM 227 + G TI++ TH + A R+A+M+ GK++ G P+ ++ Sbjct: 207 MDYHRRTGATIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVI 252 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 62.0 bits (149), Expect = 1e-11 Identities = 70/272 (25%), Positives = 110/272 (40%), Gaps = 75/272 (27%) Query: 17 LVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFVDGIPVH 76 L + G AV+ +S S+ +GE+ G++G +G+GKTT + I GL P G +F+D Sbjct: 20 LKKVIGYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFID----- 74 Query: 77 RQPRLARTRIGYLSQRFSLYEDLSPEENVR--FFSALYRVEDTRTAHYLARLS------- 127 G L + S+YE L ENV+ ++ T +Y+ R + Sbjct: 75 -------IDKGELEEAVSIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRK 127 Query: 128 ---------------SWLGEGARRPVRTLPL-----GFRQRV------------------ 149 +GE PVR + G ++RV Sbjct: 128 VQMVQQDPYSSLNPRMKVGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYP 187 Query: 150 -----------GLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYRQSSK--GKTILVT 196 + AL +P +L+LDEPTS +D V Q + R+ K G T L+ Sbjct: 188 YELSGGQRQRVAIARALALNPKILVLDEPTSALD-VSIQAQILRLLRELWKKYGLTYLLI 246 Query: 197 THYMEEAEY-CHRVAIMHQGKVLVEGPPQEIM 227 TH + Y V +M+ GK++ E P+ I+ Sbjct: 247 THDISVVRYMSSSVVVMYSGKIM-ESAPKHIL 277 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 57.4 bits (137), Expect = 3e-10 Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 22/199 (11%) Query: 30 ISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFVDGIPVHRQPRLARTRIGYL 89 ++ S+ RG V +LGANG+GKTT +++ LL P G V+G P L +G+L Sbjct: 10 VTLSIPRG-VTAILGANGSGKTTLLKLAARLLKPDRGS--VEG-PRRVGAALQNPYLGFL 65 Query: 90 SQRFSLYEDLSPEENVRFFSALYRVEDTRTAHYLARLSSWLGEGARRPVRTLPLGFRQRV 149 ++ EDL+ R R + L + R TL +G + + Sbjct: 66 GP--TVAEDLA------------RTAGGRGEALKLLREAGLEYASERSPYTLSMGEARIL 111 Query: 150 GLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYRQSSKGKTILVTTHYME-EAEYCHR 208 ++ A+ P +++DEPTSG+D G++ I R G +LV H ++ A Sbjct: 112 SVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLIAR---LGVPVLVAGHDIDFAAAVAGW 168 Query: 209 VAIMHQGKVLVEGPPQEIM 227 I+ G+V V G + ++ Sbjct: 169 AVILRDGRVRVSGDMERVL 187 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 55.1 bits (131), Expect = 2e-09 Identities = 62/211 (29%), Positives = 85/211 (40%), Gaps = 19/211 (9%) Query: 10 PMIEVEGLVRRFGSFTAVNRISFSVAR-GEVFGLLGANGAGKTTTIRMICGLLPPTAGRI 68 PM E V R+G + R G+V GLLG NG GKTT +R++ G L P GR Sbjct: 79 PMELEEEAVHRYG-VNGFKLFRLPIPREGQVVGLLGRNGTGKTTALRILAGELKPNLGR- 136 Query: 69 FVDGIPVHRQPRLARTRIGYLSQRFS-------------LYEDLSPEE-NVRFFSALYRV 114 V+G L R R L F Y +L P R L R Sbjct: 137 -VEGGEPEWDEILKRFRGSELQTYFRKLVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRA 195 Query: 115 EDTRTAHYLARLSSWLGEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPV 174 ++ A LA L + R VR L G Q++ ++ L D + I DEP+S +D Sbjct: 196 DERGVALELAE-QVGLDKVFDRDVRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIR 254 Query: 175 GRQEFWEEIYRQSSKGKTILVTTHYMEEAEY 205 R I + G ++V H + +Y Sbjct: 255 ERMRMARLIAGAARPGAYVMVVEHDLAVLDY 285 Score = 52.4 bits (124), Expect = 1e-08 Identities = 58/223 (26%), Positives = 94/223 (42%), Gaps = 16/223 (7%) Query: 3 GRDQSTSPMIEVEGLVRRFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLP 62 GR S ++ GL FT + ++ GEV G+ G NG GKTT +R + G L Sbjct: 350 GRQASRRRIVGWTGLRVALDGFTLTSGEG-ALYGGEVIGVAGPNGIGKTTFVRTLAGALK 408 Query: 63 PTAGRIFVDGIPVHRQPRLARTRIGYLSQRFS--LYEDLSPEENVRFFS-ALYRVEDTRT 119 P G ++ P + R+ Y Q S D + E+ ++ + A+ Sbjct: 409 PVEGAVY---------PYVEDLRVSYKPQYISPESLPDATVEQVLKAANPAILAPGSWLN 459 Query: 120 AHYLARLSSWLGEGARRPVRTLPLGFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQEF 179 + R+ L + R VRTL G Q+V + AL + + +LDEP++ +D R Sbjct: 460 LELVKRMR--LDKLLERRVRTLSGGELQKVAVAAALAREADVYLLDEPSAYLDVEERVGV 517 Query: 180 WEEIYR-QSSKGKTILVTTHYMEEAEYCHRVAIMHQGKVLVEG 221 I R ++ LV H + +Y ++ G+ V G Sbjct: 518 ARAIRRIVETREAAALVVEHDLMILDYVSDRIMLVTGEPGVRG 560 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 53.1 bits (126), Expect = 6e-09 Identities = 55/222 (24%), Positives = 101/222 (45%), Gaps = 26/222 (11%) Query: 20 RFGSFTAVNRISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTA----GRIFVD---G 72 R G A++ + V +GE+ ++G +G GK+T R I +LP A G I ++ G Sbjct: 18 RQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILPSNAVIEKGSIILNLGSG 77 Query: 73 IPVH----RQPRLARTRIGYLSQRFSLYED----LSPEENVRFFSALYRVEDTRTAHYLA 124 V + L + R +S +++D LSP V+ + + R +A Sbjct: 78 NTVDLVRLSEDELVKIRGKIVSM---IFQDPSAALSPVHKVKKQVTDHVSGEKRRVEKIA 134 Query: 125 R--LSSWLGEGARRPVRTLPL----GFRQRVGLMCALLHDPPLLILDEPTSGVDPVGRQE 178 + L + + P G +QR+ + +L+ P ++I DEPT+ +D + + Sbjct: 135 QEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQ 194 Query: 179 FWEEIYRQSSKGKT--ILVTTHYMEEAEYCHRVAIMHQGKVL 218 + + R + +T IL+T + AE R+A+M+ G V+ Sbjct: 195 ILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVV 236 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 49.7 bits (117), Expect = 7e-08 Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 14/206 (6%) Query: 30 ISFSVARGEVFGLLGANGAGKTTTIRMICGLLPPTAGRIFVDGIPVHRQPRLARTRIGYL 89 +S RG L G G GK+T +R+ GL G + +P L + Sbjct: 23 VSLEAPRGITL-LAGPTGGGKSTILRVAAGLATRIYGGYLRGEVEARGKPVL-------V 74 Query: 90 SQRFSLYE-DLSPEENVRFFSALYRVEDTRTAHYLARLSSWLG--EGARRPVRTLPLGFR 146 Q + L+ L+P E + + + RL+ LG + R V L G R Sbjct: 75 PQDYDLFILSLTPREELEYCYEASGLPPWEARREAVRLAEELGIEDLLDRRVSKLSAGER 134 Query: 147 QRVGLMCALLHDPPLLILDEPTSGVDPVGRQEFWEEIYRQSSKGKTILV-TTHYMEEAEY 205 QRV + AL +L++DEP + DP+G + + R +G + HY+ A Sbjct: 135 QRVAIASALALGAEVLLMDEPLAYQDPLGVESLIRLLRRLDVEGVVVAEHRVHYLLPA-- 192 Query: 206 CHRVAIMHQGKVLVEGPPQEIMASSG 231 V +++ G+ GP + + +G Sbjct: 193 ASSVYLVYDGRAKQLGPGEAVEVLAG 218 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 269,083 Number of Sequences: 1700 Number of extensions: 12255 Number of successful extensions: 174 Number of sequences better than 1.0e-04: 40 Number of HSP's better than 0.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 49 length of query: 249 length of database: 492,079 effective HSP length: 75 effective length of query: 174 effective length of database: 364,579 effective search space: 63436746 effective search space used: 63436746 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719634|ref|YP_003875166.1| transporter [Spirochaeta thermophila DSM 6192] (361 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.139 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 243,180 Number of Sequences: 1700 Number of extensions: 7450 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 361 length of database: 492,079 effective HSP length: 78 effective length of query: 283 effective length of database: 359,479 effective search space: 101732557 effective search space used: 101732557 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719635|ref|YP_003875167.1| transporter [Spirochaeta thermophila DSM 6192] (365 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602155|ref|NP_148703.1| ABC transporter permease [Aeropyrum... 55 2e-09 >gi|14602155|ref|NP_148703.1| ABC transporter permease [Aeropyrum pernix K1] Length = 283 Score = 55.5 bits (132), Expect = 2e-09 Identities = 58/236 (24%), Positives = 99/236 (41%), Gaps = 45/236 (19%) Query: 149 PVVREGTATVHYW-YNPLLKSQVYM--IPGLVILIVTMVSLLLGALSLVREKEQGTLDQL 205 P V E TV W + +Q Y + ++ + ++ + GA+ +V ++ G L +L Sbjct: 59 PAVAEALRTVMAWRLESVFGTQDYFTYVATGMLAVFSLFQSMFGAVGVVFDRRIGYLTRL 118 Query: 206 LVSPLSPLQILT----GTLFPFLLYSLVELSLA---------------MTAAWAIFGTLP 246 L SP+ I GTLF + SL+ L++A + AW + + Sbjct: 119 LASPIPRFSIFASKVLGTLFRITVLSLILLAIAYPLGLHLKPGITIIDLVMAWLVLMLMS 178 Query: 247 RGGIXXXXXXXXXXXXXXXXXXXXISTISHTQTQALFFAWFAMVVLILL--SGFLIPVAN 304 G I+H Q + FA ++ L L+ S L P+ Sbjct: 179 LG--------------LSSLFTGMAFNITH---QEVLFALANLINLPLMFSSSALFPIDL 221 Query: 305 MPQWLKTLTLLNPLRYMMTVVRELYIKGAPLSALWREVLALGGLGILVMGVAAARF 360 MP WLKT+ +NP+ + +VR Y+ G PL V+++ L +L + + AA + Sbjct: 222 MPNWLKTVAQVNPITHAADLVR-YYLVGKPLE---DPVMSIAYLAVLTLFLLAAGY 273 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.140 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 280,099 Number of Sequences: 1700 Number of extensions: 10502 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 1 length of query: 365 length of database: 492,079 effective HSP length: 78 effective length of query: 287 effective length of database: 359,479 effective search space: 103170473 effective search space used: 103170473 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719636|ref|YP_003875168.1| dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex (E2) [Spirochaeta thermophila DSM 6192] (425 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601549|ref|NP_148089.1| branched-chain alpha-keto acid dehy... 182 1e-47 gi|118431840|ref|NP_148556.2| hypothetical protein APE_2347.1 [A... 45 3e-06 >gi|14601549|ref|NP_148089.1| branched-chain alpha-keto acid dehydrogenase E2 [Aeropyrum pernix K1] Length = 412 Score = 182 bits (463), Expect = 1e-47 Identities = 137/420 (32%), Positives = 199/420 (47%), Gaps = 45/420 (10%) Query: 10 EGTIVAWHKKKGERVESGDVLCEVETDKATMDYESTQSGVLLEILKKEGEKARVGEVIAV 69 EG IV W ++G V+ L V T KAT++ S +G ++ +L K G+ RVG+ I Sbjct: 18 EGEIVEWLVEEGAVVKQFSPLVRVLTAKATVEIPSPYTGRVVRLLAKPGDVVRVGDPIIE 77 Query: 70 XXXXXXXXXXXXXXXXXXXXXTPKAGSEPDRPPAVEAPSPKEEXXXXXXXXXXXXXXXED 129 + G P P A E PS E Sbjct: 78 IEV--------------------EEGEAPKAPEAAEKPS----------------ATVEP 101 Query: 130 LRGRAALEVPP---PAGRVKASPLARKRARELGVDLRLVRGSGPGGRVTVRDVEEXXXXX 186 + A PP PA V+A P R+ AR+LGVDL VRG+GP G +T DV Sbjct: 102 PKAEEAAAPPPQAAPAILVRAPPRVRRLARQLGVDLARVRGTGPRGAITEDDVRRAAAML 161 Query: 187 XXXXXXXXXX-XRRLAGGREPVTPMRAAIARRLSESKRTAPHFTLTVKVRADRLLTLREQ 245 A R PV ++ ++A+ +S SK PH + +V L LRE Sbjct: 162 ATAPKPEAPPPVAEEAEERIPVRGIKRSMAQSMSLSKSKIPHAYIAEEVDFTELSKLREA 221 Query: 246 VNEGRQE---RLSFNAFLMKLAAEALVRHPQILSSWEGEAIRYF--DTVDIGLAVALPGG 300 + +E RL++ F+ K A+A+ ++P + S ++ E + V+IG AV P G Sbjct: 222 LKRDAEEKGVRLTYLPFVFKAVAKAIRKYPLVNSEFDEEKMEIVVKKAVNIGFAVDTPHG 281 Query: 301 LITPVVRSCEYKTVEEIDRELKDLIARAREGGLSPEEYTGAGFTISNLGSYGITEFTAII 360 L+ PVV++ E K + I RE+ DL A+ARE LS EE +GA FTI+N+GS G +I Sbjct: 282 LVVPVVKNVEKKGLFAIAREIADLTAKAREMRLSLEEVSGATFTITNVGSIGSVIGFPVI 341 Query: 361 NPPASAILAVGAVTTEPVWEGGGVVPARVVRLTLSCDHRTIDGAVGAAFMAGLARYVEEP 420 PP AIL V + PV+ G + P ++ ++LS DHR ++GA F+ + R +E P Sbjct: 342 YPPNVAILGVHRLVERPVYVDGELKPRKIGFVSLSFDHRALEGAYATRFLMEVKRLLENP 401 >gi|118431840|ref|NP_148556.2| hypothetical protein APE_2347.1 [Aeropyrum pernix K1] Length = 92 Score = 45.1 bits (105), Expect = 3e-06 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%) Query: 11 GTIVAWHKKKGERVESGDVLCEVETDKATMDYESTQSGVLLEILKKEGEKARVGEVIAV 69 G +V +KK G+ VE G+VL E+E +KA ++ ES SG + I+ EGE+ V+AV Sbjct: 22 GKVVRVYKKPGDLVEKGEVLAEIEIEKAILEVESPVSGRVRSIV-GEGEEVTPESVVAV 79 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 439,412 Number of Sequences: 1700 Number of extensions: 19811 Number of successful extensions: 77 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 2 length of query: 425 length of database: 492,079 effective HSP length: 79 effective length of query: 346 effective length of database: 357,779 effective search space: 123791534 effective search space used: 123791534 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719637|ref|YP_003875169.1| pyruvate dehydrogenase E1 component subunit beta [Spirochaeta thermophila DSM 6192] (309 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601550|ref|NP_148090.1| pyruvate dehydrogenase E1 subunit b... 225 1e-60 gi|14600816|ref|NP_147339.1| transketolase [Aeropyrum pernix K1] 42 2e-05 >gi|14601550|ref|NP_148090.1| pyruvate dehydrogenase E1 subunit beta [Aeropyrum pernix K1] Length = 325 Score = 225 bits (573), Expect = 1e-60 Identities = 124/308 (40%), Positives = 185/308 (60%), Gaps = 4/308 (1%) Query: 1 MARDERVFLMGEEVGEYDGAYKVSRGLLVKYGPKRVIDTPISELGFTXXXXXXXXXXLRP 60 M RD+ V ++GE+VG G + V+ GL+ ++G +RVIDTP++E+G LRP Sbjct: 18 MRRDKSVVVLGEDVGRRGGVFLVTEGLIDEFGEERVIDTPLTEMGIVAFAIGMAMYGLRP 77 Query: 61 VVEWMTHNFAILAMDQVINNAAKMRHMSGGQLKVPIVFRGPNGPAEYLSSQHSQSLAAFW 120 V E +F A DQ++NNAA R SGG VP+V RGP HSQS ++ Sbjct: 78 VAEIQFIDFIYEAFDQIVNNAAWYRFRSGGMYNVPLVIRGPCCGGIRGGMHHSQSNEPYF 137 Query: 121 MHVPGLKVVAPATPYDAKGLLKSAIRDDDPVVMLEAELMY-AWEGEVPEEEYLVPIGKAD 179 +H PGL VV P+TPYDAKGLLKS+IR DD V+ LE + +Y EVP+ +Y +P+G+A Sbjct: 138 IHTPGLYVVMPSTPYDAKGLLKSSIRSDDAVIFLEPKSIYRTIREEVPDNDYTIPLGQAR 197 Query: 180 IKRPGKDVSVITYSKPLKVVMEAAKVL-EERGVDVEVVDLRSLRPLDTETIFSSVRKTHR 238 + + G DV+++T+ + + EAA++L E+RG +E++DLR+L+P D + + S+ KT R Sbjct: 198 LVQEGSDVTLVTWGAMVHLAKEAAELLREKRGWSIEIIDLRTLQPWDKDMVVKSLEKTGR 257 Query: 239 AVVVDEAWPMCGPASFVAWAVGKACFDDLDAQVEIVTSEDVPMPYNHTLELAVQSSVEKV 298 V+V EA + GP + +A + + D L V+ V S D P P H E ++ K+ Sbjct: 258 LVIVHEARKILGPGAEIAAYISENYIDLLRGPVKRVASYDTPYPLAH--EKLYLPNLAKI 315 Query: 299 VAAVSRVL 306 AV+ V+ Sbjct: 316 YRAVTEVM 323 >gi|14600816|ref|NP_147339.1| transketolase [Aeropyrum pernix K1] Length = 322 Score = 42.0 bits (97), Expect = 2e-05 Identities = 51/226 (22%), Positives = 88/226 (38%), Gaps = 11/226 (4%) Query: 19 GAYKVSRGLLVKYGPKRVIDTPISELGFTXXXXXXXXXXLRPVVEWMTHNFAILAMDQVI 78 GA +V R P+RV++ ISE LRPVV F + +Q+ Sbjct: 42 GAIEVYRS-----APRRVLNMGISEQDLIGTAAGIALAGLRPVVTGFGA-FLMRGWEQIR 95 Query: 79 NNAAKMRHMSGGQLKVPIVFRGPNGPAEYLSSQHSQSLAAFWMHVPGLKVVAPATPYDAK 138 N + G +K+ G + + S Q + LA + V +PA Sbjct: 96 NTVDR----DGLNVKIVATHTGLSPHVDGSSHQVLEDLALM-RSLARTAVFSPADDVATV 150 Query: 139 GLLKSAIRDDDPVVMLEAELMYAWEGEVPEEEYLVPIGKADIKRPGKDVSVITYSKPLKV 198 ++ +R + A+ EE P G + PG+ V+++ + V Sbjct: 151 ETVEWLVRRYRGPAYVRLGRDNAFRVYSEEEFTFRPGGGEVLVEPGEAVTLLATGPMVGV 210 Query: 199 VMEAAKVLEERGVDVEVVDLRSLRPLDTETIFSSVRKTHRAVVVDE 244 + AA +L G+ V VVD+ S++P + + ++ V V+E Sbjct: 211 SLAAAALLRSEGLRVGVVDVYSIKPAPRRLVLEAAERSRLLVTVEE 256 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 315,207 Number of Sequences: 1700 Number of extensions: 13547 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 2 length of query: 309 length of database: 492,079 effective HSP length: 77 effective length of query: 232 effective length of database: 361,179 effective search space: 83793528 effective search space used: 83793528 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719638|ref|YP_003875170.1| pyruvate dehydrogenase E1 component subunit alpha [Spirochaeta thermophila DSM 6192] (338 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431551|ref|NP_148091.2| pyruvate dehydrogenase E1 subunit ... 169 7e-44 >gi|118431551|ref|NP_148091.2| pyruvate dehydrogenase E1 subunit alpha [Aeropyrum pernix K1] Length = 377 Score = 169 bits (429), Expect = 7e-44 Identities = 104/279 (37%), Positives = 151/279 (54%), Gaps = 6/279 (2%) Query: 54 GQEAVAVGSIAAIDLSKDYVVTAYRDHGHALACGMDPKVVMAELFGKVTGCSRGKGGSMH 113 GQEAVAVG+ + D+V +YR+ G L GM + ++ KG Sbjct: 72 GQEAVAVGAAKPLRRD-DWVFPSYRELGAYLVRGMSEEEILDRALANADDPL--KGSDFA 128 Query: 114 MFDVEKHFLGGNGI-VGAQIPVGTGVAFAQKYQGTGGVTLVYFGDGAIHQGAFHEALNMA 172 +F K+ L + VG QIP+ G A+A KY G VTL +FGDGA +G FH LN A Sbjct: 129 IFGNRKYNLVPAPVPVGNQIPISVGAAYAMKYLGRDTVTLTFFGDGATSRGDFHAGLNFA 188 Query: 173 KIWELPVVYVCENNQWGMGTFWKKVSAVADLYKLGAAYDIPGVQVDGMDVRAVYEATGEA 232 ++++P V V +NNQW + + +A L G AY +PGV++DG DV VY+ +A Sbjct: 189 GVFKVPAVLVIQNNQWAISVPRARQTAAPSLAVKGLAYGVPGVRIDGNDVMVVYKIVSDA 248 Query: 233 VSRARE-GQPVLIEARTYRYKGHSMS-DPAKYRTREELEEYKRQDPIGRLKTFMEEEGLL 290 +AR G P LIEA TYR H+ + DP++YRT EE +R +P+ R++ FME G+L Sbjct: 249 AEKARRGGGPTLIEAVTYRLGPHTTADDPSRYRTSEEERIMERYEPLRRMRKFMESMGIL 308 Query: 291 DEETFRSLYDEIQREVEEAVAFAEQSEEPALHTMYEDVY 329 E+ S+ +E +VEE V + +++VY Sbjct: 309 TEKEALSIEEEWNSKVEEIVRKVLAKPPLPENVFFQNVY 347 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 375,072 Number of Sequences: 1700 Number of extensions: 18054 Number of successful extensions: 76 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 1 length of query: 338 length of database: 492,079 effective HSP length: 77 effective length of query: 261 effective length of database: 361,179 effective search space: 94267719 effective search space used: 94267719 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719639|ref|YP_003875171.1| hypothetical protein STHERM_c19630 [Spirochaeta thermophila DSM 6192] (148 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 141,703 Number of Sequences: 1700 Number of extensions: 4869 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 148 length of database: 492,079 effective HSP length: 69 effective length of query: 79 effective length of database: 374,779 effective search space: 29607541 effective search space used: 29607541 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719640|ref|YP_003875172.1| hypothetical protein STHERM_c19640 [Spirochaeta thermophila DSM 6192] (33 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.147 0.476 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,806 Number of Sequences: 1700 Number of extensions: 727 Number of successful extensions: 1 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 33 length of database: 492,079 effective HSP length: 7 effective length of query: 26 effective length of database: 480,179 effective search space: 12484654 effective search space used: 12484654 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719641|ref|YP_003875173.1| hypothetical protein STHERM_c19650 [Spirochaeta thermophila DSM 6192] (72 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,940 Number of Sequences: 1700 Number of extensions: 3126 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 72 length of database: 492,079 effective HSP length: 43 effective length of query: 29 effective length of database: 418,979 effective search space: 12150391 effective search space used: 12150391 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719642|ref|YP_003875174.1| chaperone protein HtpG [Spirochaeta thermophila DSM 6192] (615 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 598,145 Number of Sequences: 1700 Number of extensions: 27331 Number of successful extensions: 80 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80 Number of HSP's gapped (non-prelim): 0 length of query: 615 length of database: 492,079 effective HSP length: 82 effective length of query: 533 effective length of database: 352,679 effective search space: 187977907 effective search space used: 187977907 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719643|ref|YP_003875175.1| hypothetical protein STHERM_c19670 [Spirochaeta thermophila DSM 6192] (163 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.142 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 168,494 Number of Sequences: 1700 Number of extensions: 7193 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 163 length of database: 492,079 effective HSP length: 70 effective length of query: 93 effective length of database: 373,079 effective search space: 34696347 effective search space used: 34696347 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719644|ref|YP_003875176.1| hypothetical protein STHERM_c19680 [Spirochaeta thermophila DSM 6192] (240 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 214,053 Number of Sequences: 1700 Number of extensions: 8307 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 240 length of database: 492,079 effective HSP length: 74 effective length of query: 166 effective length of database: 366,279 effective search space: 60802314 effective search space used: 60802314 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719645|ref|YP_003875177.1| PPIC-type PPIASE domain-containing protein [Spirochaeta thermophila DSM 6192] (336 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.311 0.129 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 243,381 Number of Sequences: 1700 Number of extensions: 8743 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 0 length of query: 336 length of database: 492,079 effective HSP length: 77 effective length of query: 259 effective length of database: 361,179 effective search space: 93545361 effective search space used: 93545361 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719646|ref|YP_003875178.1| hypothetical protein STHERM_c19700 [Spirochaeta thermophila DSM 6192] (449 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431864|ref|NP_148594.2| MatE efflux family protein [Aeropy... 82 3e-17 gi|118431584|ref|NP_148157.2| MatE efflux family protein [Aeropy... 79 3e-16 >gi|118431864|ref|NP_148594.2| MatE efflux family protein [Aeropyrum pernix K1] Length = 475 Score = 81.6 bits (200), Expect = 3e-17 Identities = 81/381 (21%), Positives = 137/381 (35%), Gaps = 18/381 (4%) Query: 62 LGNGLMVGTASLVARAVGEENEEKLDAAADSGIFMAVLISVAMLAGGYLLKEQLVGALGA 121 LG G+ ++LV++A+G + A + +++ A L E + G Sbjct: 71 LGIGINTTLSALVSQAIGARDYASAQRYASKLLGATLMLGAASALAIILTAETVFILQGF 130 Query: 122 EGDYYMRALEYFTYILPGAAFIFMQNTLIGVLQGEGLVNYVMRSMIIGTVLNIVLDPVFI 181 +G AL Y G F+ V+ G + + ++LN++LDP+ I Sbjct: 131 QGRSLEVALAYTLVEAVGMPFMLALFYFNAVMAASGDTRTPFKVSALSSILNVILDPILI 190 Query: 182 F----LFGWGIKGAALATVLAQGIGFLYVVYVFLAGKTRVPIHIRLSGIRGKVMAEIFSV 237 F L G GAA+ATVLA+ Y+ L G ++ S +++ I + Sbjct: 191 FGLILLPPLGAVGAAVATVLARAAAVSIAFYLLLRGAP--GFRVKPSMPDRQLIGHILRI 248 Query: 238 GFPQTLGQAIMSLSFLIFNRIVIAIDPLALTAFTLCGRFDQAILMPIFAVASALVTMMGQ 297 G P +L + ++S+ FL+ IV + + A+ + + F A T++GQ Sbjct: 249 GGPVSLQRLVVSMGFLVMMGIVARLGAPVVAAYNVSLVIIHIVQSATFGFNIATATVVGQ 308 Query: 298 NFGRRLYDRMLSIWHVALRXXXXXXXXXXXXXXXFAPRIFSLFTDVPEVLSYAVAQVRTM 357 N G R + + + + SLFT + EV YA + + Sbjct: 309 NLGASNISRAVRAAYTGVALVFGLLSIGAVAIVGGRSMLVSLFTSIEEVQFYAERMISIV 368 Query: 358 EYAFIFASFGILGRSFFQAIGKGWAGXXXXXXXXXXXXXX------XXXXXXXXXHLGIR 411 F +FF A+G LG Sbjct: 369 ALGMPFLG------AFFTAMGVARGSGRTAFISALGIARLWLLRIPAAYTLVYIYSLGDM 422 Query: 412 GVWFGLIFANLSTALTAALWV 432 GVW + +N+ A WV Sbjct: 423 GVWLAMTLSNIIAGTLAIAWV 443 >gi|118431584|ref|NP_148157.2| MatE efflux family protein [Aeropyrum pernix K1] Length = 442 Score = 78.6 bits (192), Expect = 3e-16 Identities = 61/246 (24%), Positives = 115/246 (46%), Gaps = 13/246 (5%) Query: 60 MALGNGLMVGTASLVARAVGEENEEKLDAAADSGIFMAVLISVAMLAGGYLLKEQLVGAL 119 M + +G ++ +A+G N ++ AA G+ +++L+S+ + A + +QL+ L Sbjct: 59 MVFSTLVYMGVLVILGQAIGSGNRGLVERAAGEGLTLSILLSIIVCAAAFAASKQLLVVL 118 Query: 120 GAEGDYYMRALEYFTYILPGAAFIFMQNTLIGVLQGEGLVNYVMRSMIIGTVLNIVLDPV 179 E D A EY + L A ++ V + G ++ S + T+ N LDP+ Sbjct: 119 APEVDQL--AWEYLSVSLLTVALHYVTILYDAVFRALGKTMPILYSSGVFTLANTALDPI 176 Query: 180 FIF----LFGWGIKGAALATVLAQGIGFLYVVYVFLAGKTRVPIHIRLSGIRG-KVMAEI 234 I+ G++GAA A+V A +G L +VY+ + + L +R V I Sbjct: 177 LIYGRLGAPALGVEGAAWASVAASLLGLLVLVYLSRY------LDVGLRPLRPTSVSRSI 230 Query: 235 FSVGFPQTLGQAIMSLSFLIFNRIVIAIDPLALTAFTLCGRFDQAILMPIFAVASALVTM 294 ++GFP + + + + +++ V AL A T+ R + +P+F++A+A M Sbjct: 231 LALGFPSMVERVVFVVGNVVYLGSVSRCGADALAAHTIGVRIESLAFLPLFSIATASGVM 290 Query: 295 MGQNFG 300 +G G Sbjct: 291 VGWEVG 296 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.144 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 369,466 Number of Sequences: 1700 Number of extensions: 14264 Number of successful extensions: 77 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 72 Number of HSP's gapped (non-prelim): 3 length of query: 449 length of database: 492,079 effective HSP length: 80 effective length of query: 369 effective length of database: 356,079 effective search space: 131393151 effective search space used: 131393151 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719647|ref|YP_003875179.1| hypothetical protein STHERM_c19710 [Spirochaeta thermophila DSM 6192] (100 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.140 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 125,290 Number of Sequences: 1700 Number of extensions: 5541 Number of successful extensions: 5 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 100 length of database: 492,079 effective HSP length: 64 effective length of query: 36 effective length of database: 383,279 effective search space: 13798044 effective search space used: 13798044 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719648|ref|YP_003875180.1| dihydroorotase [Spirochaeta thermophila DSM 6192] (325 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430959|ref|NP_147091.2| dihydroorotase [Aeropyrum pernix K1] 46 1e-06 >gi|118430959|ref|NP_147091.2| dihydroorotase [Aeropyrum pernix K1] Length = 425 Score = 45.8 bits (107), Expect = 1e-06 Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 33/138 (23%) Query: 1 MHLHLRQGAQLVAYARD------AARSFARGLV--MPNTLPPLASPESVRAYGRQIEEAA 52 MH+HLR G +L +Y D AA S LV MPNT PPL +PE++R +E A Sbjct: 60 MHVHLR-GLKL-SYKEDEVSGTAAAASGCVTLVADMPNTQPPLRTPEALREKLASLEAGA 117 Query: 53 PGFTPLLTFKILPHMDAGLVRSLKEA------GAVAGKLYPEGVTTHAEDGVRDVEGLFP 106 K+ + AG+ RS EA G K+YPE + +++ + Sbjct: 118 ---------KVDYTVYAGVPRSYGEAVEMASMGIAGFKIYPEDLV--------NLDSIKN 160 Query: 107 VFEAMAEEGLVLCIHAES 124 V EA E G+++ +H ES Sbjct: 161 VLEAAEEAGILVVLHPES 178 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 341,667 Number of Sequences: 1700 Number of extensions: 15570 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 1 length of query: 325 length of database: 492,079 effective HSP length: 77 effective length of query: 248 effective length of database: 361,179 effective search space: 89572392 effective search space used: 89572392 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719649|ref|YP_003875181.1| hypothetical protein STHERM_c19730 [Spirochaeta thermophila DSM 6192] (159 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.144 0.478 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 189,803 Number of Sequences: 1700 Number of extensions: 8283 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 159 length of database: 492,079 effective HSP length: 70 effective length of query: 89 effective length of database: 373,079 effective search space: 33204031 effective search space used: 33204031 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719650|ref|YP_003875182.1| hypothetical protein STHERM_c19740 [Spirochaeta thermophila DSM 6192] (433 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.141 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 358,194 Number of Sequences: 1700 Number of extensions: 14276 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 0 length of query: 433 length of database: 492,079 effective HSP length: 79 effective length of query: 354 effective length of database: 357,779 effective search space: 126653766 effective search space used: 126653766 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719651|ref|YP_003875183.1| presequence protease 1 [Spirochaeta thermophila DSM 6192] (971 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.142 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 991,564 Number of Sequences: 1700 Number of extensions: 47208 Number of successful extensions: 176 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 176 Number of HSP's gapped (non-prelim): 0 length of query: 971 length of database: 492,079 effective HSP length: 86 effective length of query: 885 effective length of database: 345,879 effective search space: 306102915 effective search space used: 306102915 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719652|ref|YP_003875184.1| hypothetical protein STHERM_c19760 [Spirochaeta thermophila DSM 6192] (1125 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601550|ref|NP_148090.1| pyruvate dehydrogenase E1 subunit b... 178 7e-46 gi|118431551|ref|NP_148091.2| pyruvate dehydrogenase E1 subunit ... 98 1e-21 gi|14600816|ref|NP_147339.1| transketolase [Aeropyrum pernix K1] 53 4e-08 >gi|14601550|ref|NP_148090.1| pyruvate dehydrogenase E1 subunit beta [Aeropyrum pernix K1] Length = 325 Score = 178 bits (451), Expect = 7e-46 Identities = 107/278 (38%), Positives = 163/278 (58%), Gaps = 10/278 (3%) Query: 343 VLVMRDAINRVLEKHLAGNPGVFLFGEDIEDPKGDVFGVTRGLTRKF-PGRVQNSPLAES 401 V+ M A+N L + + + V + GED+ +G VF VT GL +F RV ++PL E Sbjct: 3 VMNMVQALNTALREEMRRDKSVVVLGEDV-GRRGGVFLVTEGLIDEFGEERVIDTPLTEM 61 Query: 402 SILGISIGMALAGKRPVAFLQFADFLPIAFNQIISELGSMWWRTNGGWECPVIVM-ISCG 460 I+ +IGMA+ G RPVA +QF DF+ AF+QI++ +R+ G + P+++ CG Sbjct: 62 GIVAFAIGMAMYGLRPVAEIQFIDFIYEAFDQIVNNAAWYRFRSGGMYNVPLVIRGPCCG 121 Query: 461 GYKPGLGPFHASTMEGIAAHIPGVDVFMPSSADDAAGLLNAAFASGRPTLFFYPKSMLNN 520 G + G+ H+ + E H PG+ V MPS+ DA GLL ++ S +F PKS+ Sbjct: 122 GIRGGM--HHSQSNEPYFIHTPGLYVVMPSTPYDAKGLLKSSIRSDDAVIFLEPKSIYRT 179 Query: 521 -RQFAATRDVRRHLVPIGKAKILRRGEDLTMVTWGNNILHCLRAAETL-SRYGVEAEVID 578 R+ D + +P+G+A++++ G D+T+VTWG + AAE L + G E+ID Sbjct: 180 IREEVPDND---YTIPLGQARLVQEGSDVTLVTWGAMVHLAKEAAELLREKRGWSIEIID 236 Query: 579 LRSIVPWDKEAVLASVRKTGRLIVVHEDTHTAGMGAEI 616 LR++ PWDK+ V+ S+ KTGRL++VHE G GAEI Sbjct: 237 LRTLQPWDKDMVVKSLEKTGRLVIVHEARKILGPGAEI 274 >gi|118431551|ref|NP_148091.2| pyruvate dehydrogenase E1 subunit alpha [Aeropyrum pernix K1] Length = 377 Score = 97.8 bits (242), Expect = 1e-21 Identities = 90/362 (24%), Positives = 150/362 (41%), Gaps = 20/362 (5%) Query: 1 MARLNESERALFLDLYRYMFSAREIDRLEEDYTKRGEAFFTVSGAGHEASAV-LAPLLTE 59 + +++E E +++Y YM AR ID + G+ G EA AV A L Sbjct: 30 LPKVSEGE---IVEIYTYMVRARVIDSWLLKLQRMGKVALHAPNKGQEAVAVGAAKPLRR 86 Query: 60 HDWLHCHYRDKALMLARGLDPAQFFHSLFTNRESHSAGRQMSAHISAPHLKILSIVGPVG 119 DW+ YR+ L RG+ + N + G + + + + + V PVG Sbjct: 87 DDWVFPSYRELGAYLVRGMSEEEILDRALANADDPLKGSDFAIFGNRKYNLVPAPV-PVG 145 Query: 120 NSALQAVGVAKAVRDDEGAPVVLCSLGDGMTQQGEVLEAVAHAVRDRLPVLFFIEDNKYA 179 N +VG A A++ V L GDG T +G+ + A ++P + I++N++A Sbjct: 146 NQIPISVGAAYAMKYLGRDTVTLTFFGDGATSRGDFHAGLNFAGVFKVPAVLVIQNNQWA 205 Query: 180 ISTRTEGKTFYELPGGRVDSF-YGIPITYVDGTDAVTAYHTLRDVVARMRDDREPRIVVF 238 IS +T P V YG+P +DG D + Y + D + R P ++ Sbjct: 206 ISVPRARQT--AAPSLAVKGLAYGVPGVRIDGNDVMVVYKIVSDAAEKARRGGGPTLIEA 263 Query: 239 DVERLCNHTNADDESIYXXXXXXXXXXXXXXXIKKLRAALIESG-FSEAELLEKEAAWRA 297 RL HT ADD S Y ++++R + G +E E L E W + Sbjct: 264 VTYRLGPHTTADDPSRY-RTSEEERIMERYEPLRRMRKFMESMGILTEKEALSIEEEWNS 322 Query: 298 ELEGLAARCQLVPDPEPIFTAKKPLPPELEDPSIEDEAPPLSEEEVLVMRDAINRVLEKH 357 ++E + + AK PLP + ++ E P +EE + + + + E Sbjct: 323 KVEEIVRK----------VLAKPPLPENVFFQNVYGEKPWFIQEEERDLEETLKTMEELG 372 Query: 358 LA 359 L+ Sbjct: 373 LS 374 >gi|14600816|ref|NP_147339.1| transketolase [Aeropyrum pernix K1] Length = 322 Score = 53.1 bits (126), Expect = 4e-08 Identities = 57/227 (25%), Positives = 93/227 (40%), Gaps = 10/227 (4%) Query: 387 RKFPGRVQNSPLAESSILGISIGMALAGKRPVAFLQFADFLPIAFNQIISELGSMWWRTN 446 R P RV N ++E ++G + G+ALAG RPV F FL + QI + + Sbjct: 48 RSAPRRVLNMGISEQDLIGTAAGIALAGLRPVV-TGFGAFLMRGWEQIRNTVD------R 100 Query: 447 GGWECPVIVMISCGGYKPGLGPFHASTMEGIAAHIPGVDVFMPSSADDAAGLLNAAFASG 506 G ++ + G P + +E +A + S ADD A + + Sbjct: 101 DGLNVKIVATHT--GLSPHVDGSSHQVLEDLALMRSLARTAVFSPADDVATVETVEWLVR 158 Query: 507 RPTLFFYPKSMLNNRQFAATRDVRRHLVPIGKAKILRRGEDLTMVTWGNNILHCLRAAET 566 R Y + +N F + P G ++ GE +T++ G + L AA Sbjct: 159 RYRGPAYVRLGRDNA-FRVYSEEEFTFRPGGGEVLVEPGEAVTLLATGPMVGVSLAAAAL 217 Query: 567 LSRYGVEAEVIDLRSIVPWDKEAVLASVRKTGRLIVVHEDTHTAGMG 613 L G+ V+D+ SI P + VL + ++ L+ V E G+G Sbjct: 218 LRSEGLRVGVVDVYSIKPAPRRLVLEAAERSRLLVTVEEHRTVGGLG 264 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,097,040 Number of Sequences: 1700 Number of extensions: 50345 Number of successful extensions: 209 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 200 Number of HSP's gapped (non-prelim): 3 length of query: 1125 length of database: 492,079 effective HSP length: 87 effective length of query: 1038 effective length of database: 344,179 effective search space: 357257802 effective search space used: 357257802 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719653|ref|YP_003875185.1| hypothetical protein STHERM_c19770 [Spirochaeta thermophila DSM 6192] (357 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 414,948 Number of Sequences: 1700 Number of extensions: 20485 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 357 length of database: 492,079 effective HSP length: 78 effective length of query: 279 effective length of database: 359,479 effective search space: 100294641 effective search space used: 100294641 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719654|ref|YP_003875186.1| gamma-glutamyl phosphate reductase [Spirochaeta thermophila DSM 6192] (436 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 416,757 Number of Sequences: 1700 Number of extensions: 18332 Number of successful extensions: 74 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74 Number of HSP's gapped (non-prelim): 0 length of query: 436 length of database: 492,079 effective HSP length: 80 effective length of query: 356 effective length of database: 356,079 effective search space: 126764124 effective search space used: 126764124 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719655|ref|YP_003875187.1| glutamate 5-kinase [Spirochaeta thermophila DSM 6192] (368 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 322,364 Number of Sequences: 1700 Number of extensions: 13076 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 368 length of database: 492,079 effective HSP length: 78 effective length of query: 290 effective length of database: 359,479 effective search space: 104248910 effective search space used: 104248910 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719656|ref|YP_003875188.1| hypothetical protein STHERM_c19800 [Spirochaeta thermophila DSM 6192] (283 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.134 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 302,072 Number of Sequences: 1700 Number of extensions: 13778 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 283 length of database: 492,079 effective HSP length: 76 effective length of query: 207 effective length of database: 362,879 effective search space: 75115953 effective search space used: 75115953 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719657|ref|YP_003875189.1| hypothetical protein STHERM_c19810 [Spirochaeta thermophila DSM 6192] (311 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.142 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 220,748 Number of Sequences: 1700 Number of extensions: 6589 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 311 length of database: 492,079 effective HSP length: 77 effective length of query: 234 effective length of database: 361,179 effective search space: 84515886 effective search space used: 84515886 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719658|ref|YP_003875190.1| heptaprenyl diphosphate synthase component II [Spirochaeta thermophila DSM 6192] (327 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431580|ref|NP_148152.2| farnesylgeranyl diphosphate syntha... 96 2e-21 >gi|118431580|ref|NP_148152.2| farnesylgeranyl diphosphate synthase [Aeropyrum pernix K1] Length = 332 Score = 95.5 bits (236), Expect = 2e-21 Identities = 82/284 (28%), Positives = 123/284 (43%), Gaps = 16/284 (5%) Query: 34 ALVDLASRDAKLLRPGCMVLSARFGVGEGEIPERVVRLAAALEMLHMATLVHDDIVDDAA 93 A + L K LRP +L+AR +G E R + LAA++E H +L+HDDI+D Sbjct: 35 ASLHLIKAGGKRLRPLITLLTARM-LGGLEAEARAIPLAASIETAHTFSLIHDDIMDRDE 93 Query: 94 TRRGGAALHRAYGVKEAVLMGDLLFAKALELVAEYASRDHAVFLSRGVRHILDGEIEEVE 153 RRG H YG A+L GD L A A +++A+ SR+ + + R ++ Sbjct: 94 VRRGVPTTHVVYGDDWAILAGDTLHAAAFKMIAD--SREWGMSHEQAYRAFKVLSEAAIQ 151 Query: 154 VRRALGRDAF-------SLRRYLRRILRKTGLLFVVAFHXXXXXXXXXXXXXXXXXXIGY 206 + R D + YL + KTG L A +G Sbjct: 152 ISRGQAYDMLFEETWDVDVADYLNMVRLKTGALIEAAARIGAVAAGAGSEIEKMMGEVGM 211 Query: 207 NVGMAFQVIDDVLDVAG--RGLGKPVGRDVEQGVVGAPAVMLARREGERLGVWMRRACAG 264 N G+AFQ+ DD+L V G + GKPV D+ +G + ++ G R V + G Sbjct: 212 NAGIAFQIRDDILGVIGDPKVTGKPVYNDLRRGKKTLLVIYAVKKAGRREIVDL----IG 267 Query: 265 GVASRVWAGKVRRRLVASGAVEEARGFAQGFTARALREAGGLPA 308 AS + +V SGA++ A A+ + RA +PA Sbjct: 268 PKASEDDLKRAASIIVDSGALDYAESRARFYVERARDILSRVPA 311 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.142 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 322,794 Number of Sequences: 1700 Number of extensions: 14579 Number of successful extensions: 83 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81 Number of HSP's gapped (non-prelim): 1 length of query: 327 length of database: 492,079 effective HSP length: 77 effective length of query: 250 effective length of database: 361,179 effective search space: 90294750 effective search space used: 90294750 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719659|ref|YP_003875191.1| hypothetical protein STHERM_c19840 [Spirochaeta thermophila DSM 6192] (656 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431550|ref|NP_148088.2| dihydrolipoyl dehydrogenase [Aerop... 45 4e-06 >gi|118431550|ref|NP_148088.2| dihydrolipoyl dehydrogenase [Aeropyrum pernix K1] Length = 464 Score = 45.4 bits (106), Expect = 4e-06 Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 34/147 (23%) Query: 97 GRYPYTYLVMAAGGAPEFFNIPGVQENCFTLWSWDDAVRLRRHVENCFDEASKTQDPRKR 156 G Y+ LV+A G +P +IPG++ + + V R + R Sbjct: 123 GSIGYSKLVLALGTSPA--SIPGLEPD-------GEVVHNNRTILGL------------R 161 Query: 157 RRYLTFVIAGGGFTGVELAGELLEHRKVLCRKYHIPKDEVRVVMVEALPRILPNFTERLA 216 R+ +I GGG+ GVE A + + V V +VE L R+LPN + Sbjct: 162 RKPGRMLIVGGGYIGVEYATAMA-------------RLGVEVTIVELLDRLLPNMQRDFS 208 Query: 217 RKAHRRLERMGAEILTSSPITGARKRE 243 R RRL G +I T S + +RE Sbjct: 209 RVVERRLRAEGVKIHTKSKVEAVERRE 235 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 693,133 Number of Sequences: 1700 Number of extensions: 30757 Number of successful extensions: 106 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 104 Number of HSP's gapped (non-prelim): 2 length of query: 656 length of database: 492,079 effective HSP length: 83 effective length of query: 573 effective length of database: 350,979 effective search space: 201110967 effective search space used: 201110967 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719660|ref|YP_003875192.1| hypothetical protein STHERM_c19830 [Spirochaeta thermophila DSM 6192] (519 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431294|ref|NP_147655.2| glycerate kinase [Aeropyrum pernix... 230 5e-62 >gi|118431294|ref|NP_147655.2| glycerate kinase [Aeropyrum pernix K1] Length = 448 Score = 230 bits (587), Expect = 5e-62 Identities = 157/430 (36%), Positives = 204/430 (47%), Gaps = 10/430 (2%) Query: 92 SLVRGALS--LEGDRLTIRAKDTHLRCDLSSFREVWVLAAGKAACPMARAAEEILGDRIT 149 S++R A+ LE RL R + L R V VLA GK + MAR A E L Sbjct: 15 SILREAVGRVLEASRLDWRVRRLLEERGLCRSRAV-VLALGKGSLQMARGALECLEPE-- 71 Query: 150 DGLVVTKYGHASHLRRLPVKEAGHPVPDERSLEAGEAFLRLASRADDHXXXXXXXXXXXX 209 G+VV G ++ L V E HP+PDE SL AG L A A + Sbjct: 72 GGVVVKPRGMTGNVEGLEVVEGSHPLPDEWSLRAGRRLLEWAGSAGEGDNVVVLVSGGGS 131 Query: 210 XXXXHPYRDDRIALTPEDLTAATQTLLACGAPIQEVNCLRKHLSGLKGGRLARALFPARS 269 P L EDL LL GA I E+N +RKHLS +KGGRLA +PAR Sbjct: 132 ALAEVPME----GLALEDLREVNMLLLKSGASIHEINTVRKHLSRIKGGRLAATAYPARV 187 Query: 270 YTLVLSDVIGDDLSAIASGPTVPDPTTFADALAIVDRYGIADRLPPRVRTLLEAGARGEV 329 + SDV GD L IASGPTVPDPTT+ DALA+++RYG+ D PPRV LLEAGARGEV Sbjct: 188 LGVYASDVPGDRLDMIASGPTVPDPTTYGDALAVLERYGLRDSAPPRVVALLEAGARGEV 247 Query: 330 PDTPKPGDPVFEQASTLIIGNNLTXXXXXXXXXXXXGYTPLILTAGLEGEARQLAHLFAA 389 +TPKPGD + +N+ G+ L+LT+ LEGE+R++ A+ Sbjct: 248 EETPKPGDRRLSTTENRLAASNMDVLEDLAAWLGGRGFNTLVLTSRLEGESREVGRALAS 307 Query: 390 LIRDIL-RGIPLSPPCCILAXXXXXXXXXXXXXXXRNQEMTLAVXXXXXXXXXXXXAGFL 448 + + L RG+P+ PP +LA RN E+ LA A L Sbjct: 308 IALEALDRGVPVKPPAALLAGGETTVTVRGGGRGGRNMELALAWSLAMAYWSPEAPAAIL 367 Query: 449 SXXXXXXXXXXXXXXXLITPRILERARPHLSRLRAALADNDAYHALASLDALLITGPTGT 508 + + P + R LADND+ A A +L+ TG TGT Sbjct: 368 AMDTDGIDGRSDAAGAVAWPWLPVALRDAGLDPYQLLADNDSERAFAYAGSLVSTGLTGT 427 Query: 509 NVCDIQIVLV 518 N+ + +VL+ Sbjct: 428 NLNSVVVVLL 437 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 451,864 Number of Sequences: 1700 Number of extensions: 17761 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 1 length of query: 519 length of database: 492,079 effective HSP length: 81 effective length of query: 438 effective length of database: 354,379 effective search space: 155218002 effective search space used: 155218002 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719661|ref|YP_003875193.1| hypothetical protein STHERM_c19850 [Spirochaeta thermophila DSM 6192] (449 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.142 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 407,968 Number of Sequences: 1700 Number of extensions: 17149 Number of successful extensions: 71 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71 Number of HSP's gapped (non-prelim): 0 length of query: 449 length of database: 492,079 effective HSP length: 80 effective length of query: 369 effective length of database: 356,079 effective search space: 131393151 effective search space used: 131393151 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719662|ref|YP_003875194.1| bacterioferritin comigratory protein/NADH dehydrogenase [Spirochaeta thermophila DSM 6192] (198 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.136 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 221,141 Number of Sequences: 1700 Number of extensions: 9726 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 198 length of database: 492,079 effective HSP length: 72 effective length of query: 126 effective length of database: 369,679 effective search space: 46579554 effective search space used: 46579554 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719663|ref|YP_003875195.1| hypothetical protein STHERM_c19870 [Spirochaeta thermophila DSM 6192] (625 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 797,888 Number of Sequences: 1700 Number of extensions: 43819 Number of successful extensions: 134 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134 Number of HSP's gapped (non-prelim): 0 length of query: 625 length of database: 492,079 effective HSP length: 82 effective length of query: 543 effective length of database: 352,679 effective search space: 191504697 effective search space used: 191504697 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719664|ref|YP_003875196.1| 50S ribosomal protein L31 [Spirochaeta thermophila DSM 6192] (81 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.133 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,048 Number of Sequences: 1700 Number of extensions: 2288 Number of successful extensions: 3 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 81 length of database: 492,079 effective HSP length: 51 effective length of query: 30 effective length of database: 405,379 effective search space: 12161370 effective search space used: 12161370 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719665|ref|YP_003875197.1| transcription termination factor Rho [Spirochaeta thermophila DSM 6192] (632 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 614,407 Number of Sequences: 1700 Number of extensions: 26921 Number of successful extensions: 107 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107 Number of HSP's gapped (non-prelim): 0 length of query: 632 length of database: 492,079 effective HSP length: 83 effective length of query: 549 effective length of database: 350,979 effective search space: 192687471 effective search space used: 192687471 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719666|ref|YP_003875198.1| CinA-like protein [Spirochaeta thermophila DSM 6192] (420 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431675|ref|NP_148303.2| competence damage-inducible protei... 72 2e-14 >gi|118431675|ref|NP_148303.2| competence damage-inducible protein A [Aeropyrum pernix K1] Length = 268 Score = 72.4 bits (176), Expect = 2e-14 Identities = 53/174 (30%), Positives = 76/174 (43%), Gaps = 2/174 (1%) Query: 3 ASIIVFGTELLSGRVRDSHVQYLSRELRLLGVEVREALVLPDDPVLGREELSRMIERXXX 62 A II G ELL GR +++ +L L LLG EV + +PD EE+ R + R Sbjct: 7 AWIISVGNELLIGRTINTNAAWLGSRLTLLGFEVERVVTVPDRVEDIAEEVGRALGRARV 66 Query: 63 XXXXXXXXPTSDDHGRELLASCAGVPLVFREDVWQALVERYPH--LSEVPSNRRQAYVPE 120 PT DD + +A G L + + Y L + A +P+ Sbjct: 67 VITTGGLGPTYDDVTLQGVAMALGRGLKLHPGALEMVRRFYSKRGLGLTEDRVKMAMLPD 126 Query: 121 GFEALPNPAGTAPGLWGRVGKTWVAALPGPPVELARVFGDEVAPRIRAISGRGS 174 G E L NP G APG + VA+LPG P E+ +F + P + I+ G+ Sbjct: 127 GAEPLENPVGAAPGAVVEARGSLVASLPGVPSEMEAMFEKALRPLLEEIAPPGA 180 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 487,295 Number of Sequences: 1700 Number of extensions: 24202 Number of successful extensions: 68 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66 Number of HSP's gapped (non-prelim): 1 length of query: 420 length of database: 492,079 effective HSP length: 79 effective length of query: 341 effective length of database: 357,779 effective search space: 122002639 effective search space used: 122002639 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719667|ref|YP_003875199.1| hypothetical protein STHERM_c19910 [Spirochaeta thermophila DSM 6192] (137 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 111,254 Number of Sequences: 1700 Number of extensions: 3338 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 137 length of database: 492,079 effective HSP length: 68 effective length of query: 69 effective length of database: 376,479 effective search space: 25977051 effective search space used: 25977051 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719668|ref|YP_003875200.1| hypothetical protein STHERM_c19920 [Spirochaeta thermophila DSM 6192] (73 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,177 Number of Sequences: 1700 Number of extensions: 1513 Number of successful extensions: 2 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 73 length of database: 492,079 effective HSP length: 44 effective length of query: 29 effective length of database: 417,279 effective search space: 12101091 effective search space used: 12101091 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719669|ref|YP_003875201.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (241 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 211,694 Number of Sequences: 1700 Number of extensions: 8242 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 241 length of database: 492,079 effective HSP length: 74 effective length of query: 167 effective length of database: 366,279 effective search space: 61168593 effective search space used: 61168593 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719670|ref|YP_003875202.1| hypothetical protein STHERM_c19940 [Spirochaeta thermophila DSM 6192] (429 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.142 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 431,109 Number of Sequences: 1700 Number of extensions: 19984 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 429 length of database: 492,079 effective HSP length: 79 effective length of query: 350 effective length of database: 357,779 effective search space: 125222650 effective search space used: 125222650 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719671|ref|YP_003875203.1| hypothetical protein STHERM_c19950 [Spirochaeta thermophila DSM 6192] (236 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.311 0.130 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 239,998 Number of Sequences: 1700 Number of extensions: 10044 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 236 length of database: 492,079 effective HSP length: 74 effective length of query: 162 effective length of database: 366,279 effective search space: 59337198 effective search space used: 59337198 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719672|ref|YP_003875204.1| hypothetical protein STHERM_c19960 [Spirochaeta thermophila DSM 6192] (100 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106,302 Number of Sequences: 1700 Number of extensions: 4248 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 100 length of database: 492,079 effective HSP length: 64 effective length of query: 36 effective length of database: 383,279 effective search space: 13798044 effective search space used: 13798044 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719673|ref|YP_003875205.1| 60 kDa chaperonin [Spirochaeta thermophila DSM 6192] (542 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431718|ref|NP_148364.2| thermosome beta subunit [Aeropyrum... 104 5e-24 gi|118431257|ref|NP_147591.2| thermosome alpha subunit [Aeropyru... 92 2e-20 >gi|118431718|ref|NP_148364.2| thermosome beta subunit [Aeropyrum pernix K1] Length = 548 Score = 104 bits (260), Expect = 5e-24 Identities = 126/569 (22%), Positives = 227/569 (39%), Gaps = 94/569 (16%) Query: 4 QLKFDEEARRKLLSGVEKLANAVKVTLGPRGRNVLLDKKFGAPTVTKDGVSVAKEIELPD 63 Q + EA R + V +A +K T GP+G + +L G T+T +G ++ ++++ Sbjct: 24 QRSYGREALRANIMAVRAIAQILKTTYGPKGMDKMLVDSLGDITITNNGATILDKMDVAH 83 Query: 64 PFENMGAQLLKEVATKTNDVAGDGTTTATVLAYSIVKEGLKAVAAGANPMALKRGIDKTV 123 P A++L +++ D AGDGT T + A ++KE K + +P + G + + Sbjct: 84 P----AAKMLVQISKGQEDEAGDGTKTTVIFAGELLKEAEKLLDINIHPTIIVEGYKEAL 139 Query: 124 DLVVEEIRKNAKEIK--DRDEIAHVAAISANND---------MEIG-EEIANAMEKVGKD 171 E I A+ + D +++ +A S N+ E+ E + E+ G Sbjct: 140 RKASEVIESIAEPVSYDDVEKLKLIAKTSLNSKAVAEARDYFAELAVEAVRTVAERRGDR 199 Query: 172 GVITVEESKTIE------TTTEFVEGMQFDRGYVSAYFVNNRDTMTCVLNDPYILIHDKK 225 + + + ++ T V G+ D+ V + L D + I + Sbjct: 200 WYVDLNNIQIVKKHGGSLRDTRLVRGIVLDKEVVHPDMPRRVENARIALLDTPLEIEKPE 259 Query: 226 I-----------------SSMKDLLPILEKVAQQGKPILIIAEDVEGEALATLVVNTVRG 268 I + L +EK+A G ++I + ++ A L +G Sbjct: 260 IDLEISITSPEQIKALYEKQERILQEKIEKIAATGANVVITQKGIDDVAQHFL---AKKG 316 Query: 269 TLQACAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLENVELSQLGRAGSVKVTKDD 328 L VK ++ +E IA TG +++++ L+ E++ ++L KV +D Sbjct: 317 ILAVRRVK--------RSDIEKIARATGARIVTDIEDLRPEDLGYAEL--VEERKVGEDK 366 Query: 329 TTIVSGAGDSKAIKDRIAQIKAQIEETTSDYDREKLQERLAKLXXXXXXXXXXXXTEVEL 388 + GA + K++ ++ E + +R Sbjct: 367 MVFIEGAKNPKSV---TILLRGGFERLVDEAERS-------------------------- 397 Query: 389 KEKKHRVEDALSATRAAIEEG-IVPGGGLTYILATKALDQVDLSSWEEDEKIGFKIVKRA 447 + DALS AI +G IV GGG K L + S ++ + RA Sbjct: 398 ------LHDALSVVADAIMDGKIVAGGGAVEAEVAKVLYEY-ASKLPGKTQLAVEAFARA 450 Query: 448 LEEPMRQIAANAGLDGSIIVQRARE-----EKKGVGFDAAKMEWVDMMKVGIIDPAKVTR 502 +E + +A NAG D ++ + R E K G D E VDM G+++P +V Sbjct: 451 VEALPQALAHNAGHDPIEVLVKLRSAHEKPENKWYGVDLDTGEIVDMWSRGVLEPMRVKL 510 Query: 503 SALQNAASVAGLLLTTECAVTDIPEEEKK 531 +AL+ A VA L+L + + EEE+K Sbjct: 511 NALKAATEVASLILRIDDVIAARKEEEEK 539 >gi|118431257|ref|NP_147591.2| thermosome alpha subunit [Aeropyrum pernix K1] Length = 554 Score = 92.4 bits (228), Expect = 2e-20 Identities = 128/558 (22%), Positives = 235/558 (42%), Gaps = 63/558 (11%) Query: 4 QLKFDEEARRKLLSGVEKLANAVKVTLGPRGRNVLLDKKFGAPTVTKDGVSVAKEIELPD 63 Q + EA R + LA +K +LGPRG + +L FG TVT DG ++ KE+E+ Sbjct: 16 QRTYGREALRANILAARVLAEMLKSSLGPRGLDKMLVDAFGDITVTNDGATIVKEMEIQH 75 Query: 64 PFENMGAQLLKEVATKTNDVAGDGTTTATVLAYSIVKEGLKAVAAGANPMALKRGIDKTV 123 P A+LL EVA + GDGTT+ VLA +++++ K + +P + G K + Sbjct: 76 P----AAKLLVEVAKAQDAEVGDGTTSVVVLAGALLEKAEKLLDENLHPTIIIEGYTKAM 131 Query: 124 DLVVEEIRKNA--KEIKDRDEIAHVAAIS-ANNDMEIGEEIANAMEKVGKDGVITVEESK 180 + + + + A E++D + +A + A+ + G E + V D + TV E + Sbjct: 132 EEALRLVDEAAVPVEVEDDSVLRRIAETTLASKFVGTGPERDKIISMV-IDAIRTVAEKR 190 Query: 181 TIETTTEFVEGMQFDRGYVSAYFVNNRDTMTCVLNDPYILIHDKKISSMKDLLPILEKVA 240 G + D YV + L +L DK++ + P + K Sbjct: 191 P-------DGGYEVDLDYVKIEKKKGGSLLDSKLVRGIVL--DKEV-----VHPAMPKRV 236 Query: 241 QQGKPILIIAE-DVEGEALATLVVNTVRGTLQACAVKAPGFGDRRKAMLEDIA---ILTG 296 + K +++ A +V+ L T + T L++ F + ML D+ TG Sbjct: 237 ENAKILVLDAPLEVQKPELTTKIRVTDIEKLES-------FLEEETRMLRDMVEKIAATG 289 Query: 297 GQVISEELGLKLENVELSQLGRAGSVKVTKDDTTIVSGAGDSKAIKDRIAQIKAQIEETT 356 V+ + G ++ V L + G + V + V + K K A+I + + Sbjct: 290 ANVVITQKG--IDEVAQHFLAKKGILAVRR-----VKRSDIEKVAKATGAKIVTSLRDLK 342 Query: 357 SDY--------DREKLQERLAKLXXX----XXXXXXXXXTEVELKEKKHRVEDALSATRA 404 +Y +R+ ++++ + ++ L E + ++DAL R Sbjct: 343 PEYLGYAELVEERKVGEDKMVFIEGAKNPKSVTILLRGANDMLLDEAERNIKDALHGLRN 402 Query: 405 AIEE-GIVPGGGLTYI-LATKALDQVDLSSWEEDEKIGFKIVKRALEEPMRQIAANAGLD 462 + E IV GGG + LA K + + +++ + ALE +A +AG+D Sbjct: 403 ILREPKIVGGGGAVEVELALKLKEFARTVGGK--QQLAIEAYAEALETIPTVLAESAGMD 460 Query: 463 GSIIVQRARE------EKKGVGFDAAKMEWVDMMKVGIIDPAKVTRSALQNAASVAGLLL 516 + + R + GV K+E DM K+ + +P V + +++A+ A +L Sbjct: 461 ALEALLKLRSLHSQGYKFAGVNVLEGKIE-EDMTKINVYEPVLVKKQVIKSASEAAISIL 519 Query: 517 TTECAVTDIPEEEKKTPG 534 + + P ++K+ G Sbjct: 520 KIDDVIAAAPPKKKEKKG 537 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.312 0.131 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 504,535 Number of Sequences: 1700 Number of extensions: 21276 Number of successful extensions: 98 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91 Number of HSP's gapped (non-prelim): 3 length of query: 542 length of database: 492,079 effective HSP length: 81 effective length of query: 461 effective length of database: 354,379 effective search space: 163368719 effective search space used: 163368719 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719674|ref|YP_003875206.1| hypothetical protein STHERM_c19980 [Spirochaeta thermophila DSM 6192] (520 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 415,511 Number of Sequences: 1700 Number of extensions: 15622 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 520 length of database: 492,079 effective HSP length: 81 effective length of query: 439 effective length of database: 354,379 effective search space: 155572381 effective search space used: 155572381 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719675|ref|YP_003875207.1| hypothetical protein STHERM_c19990 [Spirochaeta thermophila DSM 6192] (246 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 244,146 Number of Sequences: 1700 Number of extensions: 10065 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 246 length of database: 492,079 effective HSP length: 74 effective length of query: 172 effective length of database: 366,279 effective search space: 62999988 effective search space used: 62999988 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719676|ref|YP_003875208.1| glucose-6-phosphate 1-dehydrogenase [Spirochaeta thermophila DSM 6192] (492 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 560,998 Number of Sequences: 1700 Number of extensions: 27218 Number of successful extensions: 82 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82 Number of HSP's gapped (non-prelim): 0 length of query: 492 length of database: 492,079 effective HSP length: 81 effective length of query: 411 effective length of database: 354,379 effective search space: 145649769 effective search space used: 145649769 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719677|ref|YP_003875209.1| hypothetical protein STHERM_c20010 [Spirochaeta thermophila DSM 6192] (291 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 284,204 Number of Sequences: 1700 Number of extensions: 10953 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 291 length of database: 492,079 effective HSP length: 76 effective length of query: 215 effective length of database: 362,879 effective search space: 78018985 effective search space used: 78018985 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719678|ref|YP_003875210.1| arginine repressor [Spirochaeta thermophila DSM 6192] (158 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 128,293 Number of Sequences: 1700 Number of extensions: 4516 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 158 length of database: 492,079 effective HSP length: 70 effective length of query: 88 effective length of database: 373,079 effective search space: 32830952 effective search space used: 32830952 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719679|ref|YP_003875211.1| N-acetyl-gamma-glutamyl-phosphate reductase [Spirochaeta thermophila DSM 6192] (345 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601422|ref|NP_147960.1| N-acetyl-gamma-aminoadipyl-phosphat... 164 3e-42 gi|14601206|ref|NP_147739.1| aspartate-semialdehyde dehydrogenas... 71 3e-14 >gi|14601422|ref|NP_147960.1| N-acetyl-gamma-aminoadipyl-phosphate reductase/N-acetyl-gamma-glutamyl-phosphate reductase [Aeropyrum pernix K1] Length = 355 Score = 164 bits (415), Expect = 3e-42 Identities = 122/351 (34%), Positives = 173/351 (49%), Gaps = 19/351 (5%) Query: 1 MRIAVLGATGYTGMVLMRLLSRHPRVSEIVPVSSSKADSPVAEVDRGLGGAAYTRLSLTD 60 +R +LGA+G TG L+R+L+ HP V S A PV L G YT L Sbjct: 5 VRAGILGASGMTGGELLRILASHPGVEVEWATSREYAGKPVHTAHPHLRGF-YTGL---- 59 Query: 61 GRYVSLEEAEALSPEVVFSCLPHLASAQACA-TFVGKALVIDLSADFRLKDPHLFKATYG 119 +Y S+++ + +VVF+ LPH A A + V+DLSAD+RL+D L+ YG Sbjct: 60 -KYTSIDKIDIGEVDVVFNALPHGVGASIVAEAYENGVRVVDLSADYRLRDQSLYPKLYG 118 Query: 120 GEHPAPHLLPRAVYGLAEWNHEKIAQADLVANPGCYPTATXXXXXXXVKEGLVRDTV--T 177 +HP P LL A+Y L E EK+ A L A PGC TA V ++ V Sbjct: 119 FKHPRPDLLEEAIYALPEIYGEKLRGARLAAVPGCNATAAILAAAPLVASKIIDMDVGII 178 Query: 178 VNALSGISGAGRKLADTYLFTERTENMTPYLPGRSHRHLPEMEQEVGAVSSR-VRLLFTP 236 V+ + S AG K + + R + PY P HRH E Q + + R +RL P Sbjct: 179 VDVKAASSEAGSKPSRHSIHPLREGSARPYTPW-GHRHAAEAVQVLRDLVGRGIRLSLVP 237 Query: 237 HLVPLKQGMLVTTVCTLTREVSDEELRACYQAYYGSRPWVRI--IHPSL----PETRWVR 290 H V + +G+L + L + E Y ++Y VR+ + P L P+ + V Sbjct: 238 HAVSMTRGVLASAHALLRDNIGFSEAVRAYASFYKDSQIVRVKPMAPGLPVDPPDVKNVI 297 Query: 291 GTNRCDVSW--KREGGHLLLFSAVDNLVKGASGQAVQNMNIRLGFPETEGL 339 G+ +V + + E G + F+A+DNLV+GA+GQAV MN LGF E EGL Sbjct: 298 GSMFAEVGFAVEEESGRITGFAAIDNLVRGAAGQAVYAMNAMLGFDEWEGL 348 >gi|14601206|ref|NP_147739.1| aspartate-semialdehyde dehydrogenase [Aeropyrum pernix K1] Length = 349 Score = 71.2 bits (173), Expect = 3e-14 Identities = 99/353 (28%), Positives = 145/353 (41%), Gaps = 46/353 (13%) Query: 1 MRIAVLGATGYTGMVLMRLLSRHPRVSEIVPVSSS--KADSPVAE-VDRGLGGAAYTRLS 57 MR AVLGA+G G V +RLL HP E+ V+SS KA AE +D L G L Sbjct: 1 MRAAVLGASGLVGQVFLRLLEGHP-YFEVAAVASSPGKAGLDAAEAIDWILPGGPPGYL- 58 Query: 58 LTDGRYVSLEEAEAL---SPEVVFSCLPHLASAQACATFVGKAL-VIDLSADFRLKDPHL 113 +G +S E AL E+VFS LP A+A+ + V S++ RL DP + Sbjct: 59 --EGMRMSRPEPGALRAEGVELVFSALPSQAAAELEPALAREGFEVFSNSSNMRL-DPDI 115 Query: 114 FKATYGGEHPAPHLLPRAVYGLAEWNHEKIAQADLVANPGCYPTATXXXXXXXVKEGLVR 173 GE HL LA+ E+ + +V NP C TA + + Sbjct: 116 --PLVNGEVNPGHL------ALAKAQRERGWRGVVVKNPNC-TTAILTLALKPIVDAAGL 166 Query: 174 DTVTVNALSGISGAGRKLADTYLFTERTENMTPYLPGRSHRHLPEMEQEVGAV------S 227 V V + ISGAGR+ Y +N+ P++PG + E + +G++ Sbjct: 167 REVHVATMQAISGAGRRGVPGYGI---VDNIIPHIPGEEGKVEAESRKILGSLRGGRLEP 223 Query: 228 SRVRLLFTPHLVPLKQGMLVTTVCTLTREVSDEELRACYQAYYGSRPWVRIIHPSLPETR 287 + + T VP+ +G L R + E ++Y G + + R Sbjct: 224 AAFSVAATTTRVPVLEGHLEVVYLKTARPMEPGEAVEALESYRGIPQELGLPTAPPKPLR 283 Query: 288 WVRGTNRCDVSWKR----------------EGGHLLLFSAVDNLVKGASGQAV 324 +RG +R R EGG L + NLV+GA+G A+ Sbjct: 284 VLRGEDRPQPRLDRAAGGGMTVSVGRVEAKEGGWLRMVVLGHNLVRGAAGAAL 336 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 355,640 Number of Sequences: 1700 Number of extensions: 15171 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 3 length of query: 345 length of database: 492,079 effective HSP length: 78 effective length of query: 267 effective length of database: 359,479 effective search space: 95980893 effective search space used: 95980893 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719680|ref|YP_003875212.1| acetylglutamate kinase [Spirochaeta thermophila DSM 6192] (259 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431465|ref|NP_147959.2| acetylglutamate kinase [Aeropyrum ... 57 6e-10 >gi|118431465|ref|NP_147959.2| acetylglutamate kinase [Aeropyrum pernix K1] Length = 270 Score = 56.6 bits (135), Expect = 6e-10 Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 34/269 (12%) Query: 10 VVKIGGRAVEDEASLHRFLEELSGFLRXXXXXXXXXXXXAEVSRISRLLGIEPVF---RD 66 VVKIGG + L R +E++ R V SR +G+EP + Sbjct: 8 VVKIGGSIA---SRLERVADEIAVLAREGLRLVVVHGGGKVVDEYSRRMGVEPRYVLHPS 64 Query: 67 GLR--ITRPEEIPILEMVLAGRMNKSLVRAAHAAGIRAVGLSGADG----------PILV 114 G+R T EE+ + MV+AG + S+ + G++ + L+G DG ++V Sbjct: 65 GVRSRYTSWEELEVYVMVMAGLLATSISSELASRGLKVLSLTGLDGLSVEARRRERIVIV 124 Query: 115 GE----AISDGTRTGRVVSTDPSLLSLLMAAGYVPVLASTTMDSSGE---GLNINXXXXX 167 E G TG++ D + ++ V + + G+ LN++ Sbjct: 125 NERGRPQAIPGGYTGKIERVDSMFVGSMLQQVDVILYSPVAYGREGDRVVALNVDGDQMA 184 Query: 168 XXXXXXXXXXXXIFLSDIPGILSGGEVLSSLTPHEA-EAAIAHGVIQGGMIPKVRSSLKA 226 + ++D+PG++ G V+ + EA E A GV GM K+ + KA Sbjct: 185 ASLSAALKAPLAL-VTDVPGVILDGRVVDRIRVSEAREIAAKAGV---GMNRKILMAAKA 240 Query: 227 LGAGVGHIVIGQYTGEGDLRRLLEGKTGT 255 + G + I G+ ++ L+ G+ GT Sbjct: 241 VSEGSPYAAI----GDPPIQSLINGEKGT 265 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.137 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 254,564 Number of Sequences: 1700 Number of extensions: 10671 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 1 length of query: 259 length of database: 492,079 effective HSP length: 75 effective length of query: 184 effective length of database: 364,579 effective search space: 67082536 effective search space used: 67082536 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719681|ref|YP_003875213.1| acetylornithine aminotransferase [Spirochaeta thermophila DSM 6192] (399 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600726|ref|NP_147247.1| 4-aminobutyrate aminotransferase [A... 172 1e-44 gi|14601424|ref|NP_147962.1| acetyl-lysine aminotransferase/acet... 155 2e-39 gi|118431820|ref|NP_148523.2| glutamate-1-semialdehyde aminotran... 79 3e-16 gi|118431743|ref|NP_148406.2| glutamate-1-semialdehyde aminotran... 73 1e-14 >gi|14600726|ref|NP_147247.1| 4-aminobutyrate aminotransferase [Aeropyrum pernix K1] Length = 452 Score = 172 bits (437), Expect = 1e-44 Identities = 129/412 (31%), Positives = 184/412 (44%), Gaps = 42/412 (10%) Query: 22 LVLERGEGVYLYDIAGNRYLDFTAGIAVNALGYGDPEISRIMAEQAEKLIHVSNL-FSAM 80 LV++RG G + D+ GNRY+DF AGIAV +G+ P + + Q E+ +H S F Sbjct: 38 LVVKRGYGAVVEDVDGNRYIDFNAGIAVLNVGHNHPRVVEAVKRQLERFLHYSLTDFYYE 97 Query: 81 PTLTLAERLCAS---GGFAAAHLCNSGTEANEXXXXXXXXXXXXXXGEHAVRFLCFTHGF 137 ++ AERL S G A NSG E+ E + F GF Sbjct: 98 EAVSAAERLARSVPISGGAKTFFTNSGAESIEASIKVVRAFFRGTRPY----IISFLGGF 153 Query: 138 HGRTMGSLSVTPT-PAYQEKFLPLVPGVVSAPYNDV--------------EALEALLDE- 181 HGRT G++S + + P ++ +F PLVPG + APY D EA + +++ Sbjct: 154 HGRTYGAMSASASKPVHRARFYPLVPGFIHAPYPDPYRCPFPGLEGEACGEAAVSYIEDY 213 Query: 182 ---------RYAAVIVEPVQGEGGLEVMSREFAEVLNRLCRKYDVLLIADEVQTGLGRTG 232 AA + EP+QGEGG V F L +L RK+ +LLIADEVQTG RTG Sbjct: 214 IFSKLVDPGEVAAFLFEPIQGEGGYVVPPDSFLPSLQKLARKHGILLIADEVQTGFARTG 273 Query: 233 YLYGSEAVGLEPDIIXXXXXXXXXXXXXXXXIPERVNNLLSVGDHGSTFGGGPLACAVGL 292 ++ E G+EPD++ V + L G H +TFGG P+A A Sbjct: 274 RMFAVEHWGVEPDVMALAKAMGGGLPLGAAVGRSEVMS-LPRGSHANTFGGNPVALAAFN 332 Query: 293 HVWETVSRPEFLAEVREKGEFLARKLEAMVETFPFV----XXXXXXXXXXXXXXXXXVPV 348 V + + + GE + L E V P Sbjct: 333 AVMDVIEGERLWERSQRLGEKALKILGEAAEELSIVGHVRGKGLMIGVELVRDENTREPH 392 Query: 349 KEVIA----RAREKGLLVLRSGRNVVRLAPPLVVSREELEEGCAILEAIFAE 396 KE +A R+ ++GLLV+ +G + VR+APPL + E + G IL + E Sbjct: 393 KEALAWVLDRSFKRGLLVIGAGVSAVRIAPPLTIEEELFDRGLEILVEVLRE 444 >gi|14601424|ref|NP_147962.1| acetyl-lysine aminotransferase/acetylornithine aminotransferase [Aeropyrum pernix K1] Length = 388 Score = 155 bits (391), Expect = 2e-39 Identities = 119/375 (31%), Positives = 168/375 (44%), Gaps = 16/375 (4%) Query: 15 RQYGTEFLVLERGEGVYLYDIAGNRYLDFTAGIAVNALGYGDPEISRIMAEQAEKLIHVS 74 R YG L + +G Y++D +G +YLD AG LG+ +P I + QA +L+ S Sbjct: 9 RFYGYRGLRIVKGSMQYVWDDSGRKYLDCHAGHGAAFLGHSNPAIVEAVVRQARELVAAS 68 Query: 75 NLFSAMPTLTLAERLCASGGFAAAH-----LCNSGTEANEXXXXXXXXXXXXXXGEHAVR 129 + FS T +L E L A N+GTEA E G+ + Sbjct: 69 SSFS---TPSLEEALTEFSRIAPPWAEEIVFLNTGTEAVEAALKAAWLAT----GKRGI- 120 Query: 130 FLCFTHGFHGRTMGSLSVTPTPAYQEKFLPLVPGVVSAPYNDVEALEALLDERYAAVIVE 189 + + FHGRT+ SLSVT P Y+ + +P++ +P D +E L+ E AA+IVE Sbjct: 121 -VALKNSFHGRTLASLSVTWNPRYR-RGVPVLDTRFLSPSTDPGEVEKLVPEDTAAIIVE 178 Query: 190 PVQGEGGLEVMSREFAEVLNRLCRKYDVLLIADEVQTGLGRTGYLYGSEAVGLEPDIIXX 249 P+QGEGGL + E A+ L + LLI DE+QTG GRTG ++ E++G+EPDI+ Sbjct: 179 PIQGEGGLTKIYAELAKALREAADRVGALLIFDEIQTGFGRTGRVWAHESLGVEPDIMTA 238 Query: 250 XXXXXXXXXXXXXXIPERVNNLLSVGDHGSTFGGGPLACAVGLHVWETVSRPEFLAEVRE 309 E V L+ G HGST PL+ A + + R Sbjct: 239 GKSIAGGLPASAVLSREGVLATLASGRHGSTHAANPLSMAAVAAASRFLREEGVPDKARA 298 Query: 310 KGEFLARKLEAMVETFPFVXXXXXXXXXXXXXXXXXVPVKEVIARAREKGLLVLRSGRNV 369 G L L +E V P + + +L LRSG V Sbjct: 299 AGALLEGLLRDRIEGLRLVRGVRGEGLMLGVELRLD-PGPVLRCLQESERVLALRSGATV 357 Query: 370 VRLAPPLVVSREELE 384 VRL PP +SRE+ E Sbjct: 358 VRLLPPYSISREDAE 372 >gi|118431820|ref|NP_148523.2| glutamate-1-semialdehyde aminotransferase [Aeropyrum pernix K1] Length = 429 Score = 78.6 bits (192), Expect = 3e-16 Identities = 90/310 (29%), Positives = 119/310 (38%), Gaps = 33/310 (10%) Query: 24 LERGEGVYLYDIAGNRYLDFTAGIAVNALGYGDPEISRIMAEQAEKLIHVSNLFSAM--P 81 ++RGEG YLY + G R +D LG+ P + E E+ + L+ A Sbjct: 37 VKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRV----LEAVEEALARGWLYGAPGEA 92 Query: 82 TLTLAERLCA---SGGFAAAHLCNSGTEANEXXXXXXXXXXXXXXGEHAVRFLCFTHGFH 138 + LAE++ GG NSGTEA + ++F HG H Sbjct: 93 EVLLAEKILGYVKRGGMI--RFVNSGTEATMTAIRLARGYTGR---DLILKFDGCYHGSH 147 Query: 139 GRTMGSLSVTPTPAYQEKFLPLVPGVVSA--------PYNDVEALEALLDE---RYAAVI 187 + V A +P GV A PYNDVEALE + E R A VI Sbjct: 148 DAVL----VAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVI 203 Query: 188 VEPVQGEGGLEVMSREFAEVLNRLCRKYDVLLIADEVQTGLGRTGYLYGSEAVGLEPDII 247 VEPV G+ REF L RL R+ LLI DEV TG R G +E DII Sbjct: 204 VEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDII 262 Query: 248 XXXXXXXXXXXXXXXXIPERVNNLLSVGD---HGSTFGGGPLACAVGLHVWETVSRPEFL 304 V +LL+ + TF P+ A GL + + Sbjct: 263 VLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVY 322 Query: 305 AEVREKGEFL 314 + RE + L Sbjct: 323 SVSREAAKAL 332 >gi|118431743|ref|NP_148406.2| glutamate-1-semialdehyde aminotransferase [Aeropyrum pernix K1] Length = 430 Score = 72.8 bits (177), Expect = 1e-14 Identities = 84/321 (26%), Positives = 134/321 (41%), Gaps = 24/321 (7%) Query: 17 YGTEFLVLERGEGVYLYDIAGNRYLDFTAGIAVNALGYGDPEISRIMAEQAEKLI-HVSN 75 + E L++ +G + D G Y+DF ALG+ D +++ ++EQ +L+ H + Sbjct: 30 HSIEPLIVSWAKGSRIRDYRGREYIDFHMAFGAVALGHNDDDVAARVSEQLNRLVLHGAG 89 Query: 76 LFSAMPTLTLAERLCASGG-FAAAHLCNSGTEANEXXXXXXXXXXXXXXGEHAVRFLCFT 134 + A + A+ L + NSG+EA + V+F Sbjct: 90 VSDA--EIEFAKMLIRKFPMYDKVLFTNSGSEA---VMMAMRLARAYTGRDVVVKFDGNY 144 Query: 135 HGFHGRTMGSLSVTPTPAYQEKFLPLVPGVVSA--------PYNDVEALEALLD---ERY 183 HG+H ++ ++ PA + K + GV SA PYNDV+ALE + +R Sbjct: 145 HGWHDYSIYNIK---NPASKGKTVES-KGVPSATASTVEVLPYNDVDALEDYAERFGDRV 200 Query: 184 AAVIVEPVQGEGGLEVMSREFAEVLNRLCRKYDVLLIADEVQTGLGRTGYLYGSEAVGLE 243 AA I+EPV G+ + F E L +LC + LLI DE+ T + R + G+ Sbjct: 201 AAYILEPVAHSMGVIPAEKGFVERLRKLCDTHGSLLIFDEIITFI-RASDRGMQDYFGVR 259 Query: 244 PDIIXXXXXXXXXXXXXXXXIPERVNNLLSVGDHGS-TFGGGPLACAVGLHVWETVSRPE 302 D+ + V LL+ G S T+ G PL+ A G+ E Sbjct: 260 ADLTTVGKAIANGMPVAAVLGGDNVMELLARGVVSSGTYSGHPLSMAAGVATLEKAEDVG 319 Query: 303 FLAEVREKGEFLARKLEAMVE 323 +R + E LA L + E Sbjct: 320 LTRALRSRAEALAGILRDISE 340 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 373,399 Number of Sequences: 1700 Number of extensions: 15618 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 4 length of query: 399 length of database: 492,079 effective HSP length: 79 effective length of query: 320 effective length of database: 357,779 effective search space: 114489280 effective search space used: 114489280 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719682|ref|YP_003875214.1| argininosuccinate synthase [Spirochaeta thermophila DSM 6192] (421 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 443,488 Number of Sequences: 1700 Number of extensions: 20112 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 0 length of query: 421 length of database: 492,079 effective HSP length: 79 effective length of query: 342 effective length of database: 357,779 effective search space: 122360418 effective search space used: 122360418 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719683|ref|YP_003875215.1| glucose-6-phosphate isomerase [Spirochaeta thermophila DSM 6192] (531 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 563,517 Number of Sequences: 1700 Number of extensions: 26337 Number of successful extensions: 86 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86 Number of HSP's gapped (non-prelim): 0 length of query: 531 length of database: 492,079 effective HSP length: 81 effective length of query: 450 effective length of database: 354,379 effective search space: 159470550 effective search space used: 159470550 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719684|ref|YP_003875216.1| enolase [Spirochaeta thermophila DSM 6192] (402 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602076|ref|NP_148623.1| enolase [Aeropyrum pernix K1] 363 e-102 >gi|14602076|ref|NP_148623.1| enolase [Aeropyrum pernix K1] Length = 432 Score = 363 bits (931), Expect = e-102 Identities = 188/393 (47%), Positives = 260/393 (66%), Gaps = 8/393 (2%) Query: 1 MGRAAVPSGASTGVHEAVELRDGDKKRYMGKGVLKAVENVNNIIAPEIEGLDALDQVDID 60 +G PSGAS G EAVELRDG K + GKGV +AV +N ++AP +EG+DA Q ID Sbjct: 36 LGWGIAPSGASRGEREAVELRDGGGK-WRGKGVSRAVSLLNTVVAPRLEGVDARRQAQID 94 Query: 61 RTLIELDGTENKGKLGANAILGVSMAVARAAADFLGIPLFRYLGAYKANVLPVPMANILN 120 R LIELDGT NK +LG N +S+AV+RAAA + LF+YLG A LP+P+ N++N Sbjct: 95 RLLIELDGTPNKSRLGGNTTTALSIAVSRAAAAQARLELFQYLGGAGARRLPIPLLNVIN 154 Query: 121 GGAHADNSVDFQEFMVMPVGAPSFKEGLRMITEVFHTLKGILKEN--GYSTTVGDEGGFA 178 GG HA N +DFQEFM++P G SF E +R E + LK +LK+ + VGDEGGFA Sbjct: 155 GGVHAGNELDFQEFMIIPYGFESFTEAMRAAVETYGELKSLLKDRYGASAVNVGDEGGFA 214 Query: 179 PNLKSNEEAVELILKSIEKAGYTPGDDVMIALDPATSELYDPEKKKYVLKKSTGQELTSE 238 P ++S EEA++ ++ ++EKAGY PG ++ + +D A S+LY +Y ++ G+ L+ E Sbjct: 215 PPMRSAEEALKTLVDAVEKAGYQPGSEIALGIDAAASQLYS--NGRYSVE---GKSLSRE 269 Query: 239 QMADLWESWVKKYPIISIEDGMAEDDWEGWKILTDRIGDRVQLVGDDLFVTNSTRLAQGI 298 ++ L++ V++YPI+ +ED +EDD+EG+K D + +VGDDL VTN R+ + Sbjct: 270 ELLSLYQRLVEQYPIVYLEDPFSEDDYEGFKAAVDALSTETIIVGDDLLVTNPQRVKEAS 329 Query: 299 EKGVANAILIKVNQIGTLTETFEAVEMAKTAGYTAIVSHRSGETEDNFIADLVVALGTGQ 358 +L+KVNQ+GTLTE EA++ A+ G IVSHRSG+TED FIADL VA Sbjct: 330 ALKAVTGLLVKVNQVGTLTEALEAIQAARDRGIVHIVSHRSGDTEDTFIADLAVATEALM 389 Query: 359 IKTGSLSRSDRLSKYNQLLRIEELLGDTAEYPG 391 IKTG+ +R +R SKYN+LL IE +LG +AEY G Sbjct: 390 IKTGAPARGERTSKYNRLLEIENILGYSAEYAG 422 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 409,796 Number of Sequences: 1700 Number of extensions: 18015 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 1 length of query: 402 length of database: 492,079 effective HSP length: 79 effective length of query: 323 effective length of database: 357,779 effective search space: 115562617 effective search space used: 115562617 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719685|ref|YP_003875217.1| acylphosphatase [Spirochaeta thermophila DSM 6192] (90 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431524|ref|NP_148044.2| acylphosphatase [Aeropyrum pernix K1] 52 3e-09 >gi|118431524|ref|NP_148044.2| acylphosphatase [Aeropyrum pernix K1] Length = 101 Score = 52.0 bits (123), Expect = 3e-09 Identities = 35/86 (40%), Positives = 45/86 (52%), Gaps = 5/86 (5%) Query: 8 VEGRVQGVGFRYACLQKARALGLVGWVRNTPDG-AVEVYXXXXXXXXXXXXRWLHKGPLY 66 V G VQGV FR + ++A LGL GWVRN PDG +VE W +GP Sbjct: 18 VRGVVQGVFFRASMREEALRLGLSGWVRNLPDGESVEAVVEGRGDAVERIICWCLRGPPA 77 Query: 67 AQV--LKVDIHPMEPTGHHHEFMIRY 90 A+V L+V++ P + G F IRY Sbjct: 78 ARVRELRVELEPYK--GEFRGFEIRY 101 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.143 0.478 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,710 Number of Sequences: 1700 Number of extensions: 2745 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 1 length of query: 90 length of database: 492,079 effective HSP length: 59 effective length of query: 31 effective length of database: 391,779 effective search space: 12145149 effective search space used: 12145149 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719686|ref|YP_003875218.1| hypothetical protein STHERM_c20100 [Spirochaeta thermophila DSM 6192] (119 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.151 0.473 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 127,880 Number of Sequences: 1700 Number of extensions: 5297 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 119 length of database: 492,079 effective HSP length: 66 effective length of query: 53 effective length of database: 379,879 effective search space: 20133587 effective search space used: 20133587 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719687|ref|YP_003875219.1| DNA-binding response regulator [Spirochaeta thermophila DSM 6192] (199 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 193,207 Number of Sequences: 1700 Number of extensions: 7875 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 199 length of database: 492,079 effective HSP length: 72 effective length of query: 127 effective length of database: 369,679 effective search space: 46949233 effective search space used: 46949233 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719688|ref|YP_003875220.1| thioesterase superfamily protein [Spirochaeta thermophila DSM 6192] (164 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.143 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 199,259 Number of Sequences: 1700 Number of extensions: 9163 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 164 length of database: 492,079 effective HSP length: 70 effective length of query: 94 effective length of database: 373,079 effective search space: 35069426 effective search space used: 35069426 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719689|ref|YP_003875221.1| hypothetical protein STHERM_c20130 [Spirochaeta thermophila DSM 6192] (154 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 119,350 Number of Sequences: 1700 Number of extensions: 3601 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 154 length of database: 492,079 effective HSP length: 70 effective length of query: 84 effective length of database: 373,079 effective search space: 31338636 effective search space used: 31338636 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719690|ref|YP_003875222.1| hypothetical protein STHERM_c20140 [Spirochaeta thermophila DSM 6192] (277 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431940|ref|NP_148720.2| molybdopterin oxidoreductase, iron... 55 1e-09 gi|118430995|ref|NP_147145.2| ferredoxin [Aeropyrum pernix K1] 46 9e-07 >gi|118431940|ref|NP_148720.2| molybdopterin oxidoreductase, iron-sulfur binding subunit [Aeropyrum pernix K1] Length = 233 Score = 55.5 bits (132), Expect = 1e-09 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 10/81 (12%) Query: 5 IITIDEDLCTGCGECIPNCPEGA------LQIIDGKARLISDLFCDGLGACIGHCPVGAI 58 I+ +D+DLC GCG CI NCP GA + D + ++ D L AC+ CP GA Sbjct: 129 IVLVDDDLCIGCGACIQNCPYGARFYNPIKGVADKCTFCVHRIYSDMLPACVEACPTGAR 188 Query: 59 SFEEREAEPYDERAVIANIVR 79 F E DE + ++ ++R Sbjct: 189 VF----GELADEESEVSKLIR 205 >gi|118430995|ref|NP_147145.2| ferredoxin [Aeropyrum pernix K1] Length = 110 Score = 46.2 bits (108), Expect = 9e-07 Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 6 ITIDEDLCTGCGECIPNCPEGALQIIDG-KARLISDLFCDGLGACIGHCPVGAI-SFEER 63 + ID+D C CG CI CP AL+ + KARLI + C +CI CPV I EE Sbjct: 10 VAIDQDTCISCGACIEVCPYDALEFDENMKARLIWEK-CQDDFSCIESCPVNCIYKVEEA 68 Query: 64 EAEPYDERA 72 E E+A Sbjct: 69 PEELKTEKA 77 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 260,204 Number of Sequences: 1700 Number of extensions: 10881 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 4 length of query: 277 length of database: 492,079 effective HSP length: 76 effective length of query: 201 effective length of database: 362,879 effective search space: 72938679 effective search space used: 72938679 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719691|ref|YP_003875223.1| hydroxylamine reductase [Spirochaeta thermophila DSM 6192] (550 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 554,693 Number of Sequences: 1700 Number of extensions: 25726 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 0 length of query: 550 length of database: 492,079 effective HSP length: 81 effective length of query: 469 effective length of database: 354,379 effective search space: 166203751 effective search space used: 166203751 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719692|ref|YP_003875224.1| hypothetical protein STHERM_c20160 [Spirochaeta thermophila DSM 6192] (130 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 131,414 Number of Sequences: 1700 Number of extensions: 5911 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 130 length of database: 492,079 effective HSP length: 67 effective length of query: 63 effective length of database: 378,179 effective search space: 23825277 effective search space used: 23825277 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719693|ref|YP_003875225.1| hypothetical protein STHERM_c20170 [Spirochaeta thermophila DSM 6192] (83 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,766 Number of Sequences: 1700 Number of extensions: 3538 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 83 length of database: 492,079 effective HSP length: 53 effective length of query: 30 effective length of database: 401,979 effective search space: 12059370 effective search space used: 12059370 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719694|ref|YP_003875226.1| hypothetical protein STHERM_c20180 [Spirochaeta thermophila DSM 6192] (171 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 196,020 Number of Sequences: 1700 Number of extensions: 8354 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 171 length of database: 492,079 effective HSP length: 71 effective length of query: 100 effective length of database: 371,379 effective search space: 37137900 effective search space used: 37137900 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719695|ref|YP_003875227.1| RCC1 repeats protein [Spirochaeta thermophila DSM 6192] (385 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.136 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 466,939 Number of Sequences: 1700 Number of extensions: 22986 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 0 length of query: 385 length of database: 492,079 effective HSP length: 78 effective length of query: 307 effective length of database: 359,479 effective search space: 110360053 effective search space used: 110360053 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719696|ref|YP_003875228.1| hypothetical protein STHERM_c20200 [Spirochaeta thermophila DSM 6192] (3536 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.136 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,246,677 Number of Sequences: 1700 Number of extensions: 141718 Number of successful extensions: 346 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 346 Number of HSP's gapped (non-prelim): 0 length of query: 3536 length of database: 492,079 effective HSP length: 95 effective length of query: 3441 effective length of database: 330,579 effective search space: 1137522339 effective search space used: 1137522339 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 101 (43.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719697|ref|YP_003875229.1| hypothetical protein STHERM_c20210 [Spirochaeta thermophila DSM 6192] (70 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.139 0.523 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,721 Number of Sequences: 1700 Number of extensions: 211 Number of successful extensions: 0 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 70 length of database: 492,079 effective HSP length: 41 effective length of query: 29 effective length of database: 422,379 effective search space: 12248991 effective search space used: 12248991 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719698|ref|YP_003875230.1| hypothetical protein STHERM_c20220 [Spirochaeta thermophila DSM 6192] (244 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 208,398 Number of Sequences: 1700 Number of extensions: 7037 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 244 length of database: 492,079 effective HSP length: 74 effective length of query: 170 effective length of database: 366,279 effective search space: 62267430 effective search space used: 62267430 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719699|ref|YP_003875231.1| hypothetical protein STHERM_c20230 [Spirochaeta thermophila DSM 6192] (165 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 135,358 Number of Sequences: 1700 Number of extensions: 5195 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 165 length of database: 492,079 effective HSP length: 70 effective length of query: 95 effective length of database: 373,079 effective search space: 35442505 effective search space used: 35442505 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719700|ref|YP_003875232.1| hypothetical protein STHERM_c20240 [Spirochaeta thermophila DSM 6192] (204 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 166,660 Number of Sequences: 1700 Number of extensions: 5531 Number of successful extensions: 19 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 204 length of database: 492,079 effective HSP length: 73 effective length of query: 131 effective length of database: 367,979 effective search space: 48205249 effective search space used: 48205249 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719701|ref|YP_003875233.1| hypothetical protein STHERM_c20250 [Spirochaeta thermophila DSM 6192] (449 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.134 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 325,210 Number of Sequences: 1700 Number of extensions: 11026 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 449 length of database: 492,079 effective HSP length: 80 effective length of query: 369 effective length of database: 356,079 effective search space: 131393151 effective search space used: 131393151 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719702|ref|YP_003875234.1| hypothetical protein STHERM_c20260 [Spirochaeta thermophila DSM 6192] (514 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.132 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 537,605 Number of Sequences: 1700 Number of extensions: 24269 Number of successful extensions: 38 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 0 length of query: 514 length of database: 492,079 effective HSP length: 81 effective length of query: 433 effective length of database: 354,379 effective search space: 153446107 effective search space used: 153446107 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719703|ref|YP_003875235.1| hypothetical protein STHERM_c20270 [Spirochaeta thermophila DSM 6192] (513 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 544,157 Number of Sequences: 1700 Number of extensions: 24171 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 513 length of database: 492,079 effective HSP length: 81 effective length of query: 432 effective length of database: 354,379 effective search space: 153091728 effective search space used: 153091728 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719704|ref|YP_003875236.1| hypothetical protein STHERM_c20280 [Spirochaeta thermophila DSM 6192] (981 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 857,463 Number of Sequences: 1700 Number of extensions: 36755 Number of successful extensions: 101 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101 Number of HSP's gapped (non-prelim): 0 length of query: 981 length of database: 492,079 effective HSP length: 86 effective length of query: 895 effective length of database: 345,879 effective search space: 309561705 effective search space used: 309561705 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719705|ref|YP_003875237.1| hypothetical protein STHERM_c20290 [Spirochaeta thermophila DSM 6192] (984 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 812,182 Number of Sequences: 1700 Number of extensions: 31439 Number of successful extensions: 96 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96 Number of HSP's gapped (non-prelim): 0 length of query: 984 length of database: 492,079 effective HSP length: 86 effective length of query: 898 effective length of database: 345,879 effective search space: 310599342 effective search space used: 310599342 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719706|ref|YP_003875238.1| hypothetical protein STHERM_c20300 [Spirochaeta thermophila DSM 6192] (475 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 475,769 Number of Sequences: 1700 Number of extensions: 21163 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 0 length of query: 475 length of database: 492,079 effective HSP length: 80 effective length of query: 395 effective length of database: 356,079 effective search space: 140651205 effective search space used: 140651205 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719707|ref|YP_003875239.1| hypothetical protein STHERM_c20310 [Spirochaeta thermophila DSM 6192] (181 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431544|ref|NP_148076.2| hypothetical protein APE_1648.1 [A... 89 9e-20 >gi|118431544|ref|NP_148076.2| hypothetical protein APE_1648.1 [Aeropyrum pernix K1] Length = 189 Score = 88.6 bits (218), Expect = 9e-20 Identities = 64/175 (36%), Positives = 93/175 (53%), Gaps = 15/175 (8%) Query: 5 TYRDIVIETRQGDIASQPDLEAIVNAANAMLMPGGGVAGAIHRAAGPGLAEECRKYAPIK 64 T D V+ GD+ ++ EA+VN AN++++ GGG AGA+ RA G + EE + AP+ Sbjct: 5 TLGDRVLAVSMGDL-TKVRAEAVVNPANSLMIMGGGAAGALKRAGGSVIEEEAMRKAPVP 63 Query: 65 PGEAVITGGHNLPNRYVIHTLGPVY---GKDRPEADLLSRCYENSLRLCEQHRIESVGFP 121 GEAVIT G +LP R+VIH P G P + Y +LRL + IESV P Sbjct: 64 VGEAVITSGGSLPARFVIH--APTMEEPGMRIPLVNAFKASYA-ALRLASEAGIESVAMP 120 Query: 122 AISTGVFGYPMREAAEVAFATIKSVIERGLTYPKRIVFV-----LYRSQDQALHD 171 A+ GV G + E A A + + I RG +P+ I+ V YR ++ + + Sbjct: 121 AMGAGVGGLSVAEVARE--AAMAASILRG-KWPRYIILVARGEEAYRGMEKGVRE 172 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 195,090 Number of Sequences: 1700 Number of extensions: 8639 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 1 length of query: 181 length of database: 492,079 effective HSP length: 71 effective length of query: 110 effective length of database: 371,379 effective search space: 40851690 effective search space used: 40851690 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719708|ref|YP_003875240.1| NIF3-like protein 1 [Spirochaeta thermophila DSM 6192] (110 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 120,981 Number of Sequences: 1700 Number of extensions: 4902 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 110 length of database: 492,079 effective HSP length: 65 effective length of query: 45 effective length of database: 381,579 effective search space: 17171055 effective search space used: 17171055 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719709|ref|YP_003875241.1| Nod factor export ATP-binding protein I [Spirochaeta thermophila DSM 6192] (304 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 191 3e-50 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 155 1e-39 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 132 1e-32 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 122 1e-29 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 121 2e-29 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 118 2e-28 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 117 4e-28 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 113 5e-27 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 112 9e-27 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 111 3e-26 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 107 3e-25 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 105 1e-24 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 103 5e-24 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 102 9e-24 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 101 3e-23 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 101 3e-23 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 100 5e-23 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 100 6e-23 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 100 6e-23 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 99 1e-22 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 96 9e-22 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 94 4e-21 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 94 6e-21 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 89 1e-19 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 87 7e-19 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 84 4e-18 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 83 1e-17 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 82 2e-17 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 79 1e-16 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 78 2e-16 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 78 3e-16 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 75 3e-15 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 74 3e-15 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 70 5e-14 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 69 2e-13 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 69 2e-13 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 68 2e-13 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 57 8e-10 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 53 8e-09 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 49 1e-07 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 191 bits (484), Expect = 3e-50 Identities = 121/310 (39%), Positives = 177/310 (57%), Gaps = 14/310 (4%) Query: 2 ETIVRVEHCHKTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPE 61 E +V E K YG FRA+ +SF RGE +LLGPNGAGKTT IK+L R E Sbjct: 4 EAMVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKML-STLLRPTSGE 62 Query: 62 TRVEVFGLDPEVDELAIKQRTGVVQQENNLDDELNVVQNLKIFARFYRMKPSRARTRIEE 121 + + + E +++ G+V Q+ DDE++ N+ I AR Y + S AR R E Sbjct: 63 AWIAGYSIVREPGN--VRRVIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEARERTRE 120 Query: 122 LLEFMELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRI 181 +L++++L E + V SGGM+R+L IA +L++ P++LFLDEPT GLD R+ +W I Sbjct: 121 VLDYLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYI 180 Query: 182 RALTRQGVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVEK-HIEPHVVEVLIP 240 L R VT+LLTTHYMEEA ++DR+ I+D G + EG P EL + E +E+ P Sbjct: 181 EDLKRSAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEELKARVKGETVYIELKDP 240 Query: 241 SYTLPSGDSLRVEHSEERTLI---YAPSREKLEALTAEL-------PAGSYFIRPSTLED 290 YT P +L+ + E +++ A ++ + L EL P + I +TLED Sbjct: 241 EYTEPLVLALKEKLGLEPSVVEGKVAVRVDRADTLLPELARALNGFPVKAISITRATLED 300 Query: 291 LFLKITGRRL 300 +F+++TGR L Sbjct: 301 VFIELTGRTL 310 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 155 bits (392), Expect = 1e-39 Identities = 113/303 (37%), Positives = 155/303 (51%), Gaps = 29/303 (9%) Query: 16 TFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRVEVFGLDPEVDE 75 T RAL + GRG +LLGPNGAGKTT++KIL D V G D + Sbjct: 25 TIRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPD---SGWARVAGFDVVREA 81 Query: 76 LAIKQRTGVVQQ-ENNLDDELNVVQNLKIFARFYRMKPSRARTRIEELLEFMELSEKRDQ 134 ++ R GVV E L L+ NL F++ Y + P A+ R++ELLE + L E Sbjct: 82 NNVRSRIGVVLGGERALYWRLSGWDNLWFFSQLYGIPPREAKRRVKELLEIVGLEEWAHV 141 Query: 135 PVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRALTRQGVTVLLT 194 V+ S GMK+RL IAR L+N PE+L LDEPT GLDP+ + + IR + R+G TVLLT Sbjct: 142 RVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVLLT 201 Query: 195 THYMEEAYHIADRIIIMDHGTSLLEGNPRELVEKHIEPHVVEVLIPS------------- 241 THYM EA ++DR+ I+ G + EG P +L V+E+ + Sbjct: 202 THYMVEAEELSDRVAIISKGRIVAEGPPEDLKSLVGGESVIELKVMGGDRVSMLLERLGG 261 Query: 242 --YTLPSGDSLRVEHSEERTLIYAPSREKLEALTAEL-----PAGSYFIRPSTLEDLFLK 294 ++ D RV R L+ P +EAL AEL +R +LED+F+K Sbjct: 262 RVISVVERDGARV----FRVLVSEPD-SFIEALLAELTRINASIRGLDVRSPSLEDVFIK 316 Query: 295 ITG 297 + G Sbjct: 317 LAG 319 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 132 bits (332), Expect = 1e-32 Identities = 85/210 (40%), Positives = 119/210 (56%), Gaps = 6/210 (2%) Query: 19 ALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRVEVFGLDPEVDELAI 78 AL +SFS GE + LGPNGAGKTT ++IL DP V G D + + Sbjct: 27 ALKGVSFSVYEGEIYSFLGPNGAGKTTTVRIL--STLLDPDGG-EARVAGFDVVKERWEV 83 Query: 79 KQRTGVVQQ-ENNLDDELNVVQNLKIFARFYRMKPSRARTRIEELLEFMELSEK--RDQP 135 ++R GV+ E +L +NL F R Y + ++RI+E+L+ + L++ D+P Sbjct: 84 RKRIGVMLSVERGFYWKLTGRENLYYFGRIYGIPQGELKSRIKEVLDLVGLTDLGGADKP 143 Query: 136 VKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRALTRQGVTVLLTT 195 + +S GMK RL +AR LL PE+L LDEPT GLDP + I IR+L +G T+ +TT Sbjct: 144 FEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSLASEGRTIFITT 203 Query: 196 HYMEEAYHIADRIIIMDHGTSLLEGNPREL 225 H M EA I+DR+ I+ G +EG P EL Sbjct: 204 HNMVEAEMISDRVGIIIGGRIAMEGTPDEL 233 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 122 bits (306), Expect = 1e-29 Identities = 81/229 (35%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 1 METIVRVEHCHKTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHP 60 M+T++ K Y L + GRGE V L+GPNGAGKTT+IK+ G ARRD Sbjct: 1 MDTVLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRD--- 57 Query: 61 ETRVEVFGLDPEVDELAIKQRTGVVQQENNLDDELNVVQNLKIFARFYRMKPSRARTRIE 120 RV + GLDP + A ++ GVV + NL + VV+ L+ A PS R++ Sbjct: 58 GGRVLLNGLDPWREPRA-REGVGVVFERPNLPSSMPVVEFLESAAAIIGSSPS----RVD 112 Query: 121 ELLEFMELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDR 180 + L + LS G+K+R IA ALL +P L DEPT+ LDP R+ + Sbjct: 113 WAIRAAGLEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRL 172 Query: 181 IRALTRQ-GVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVEK 228 + L R+ G+++L+++H + E +A RI ++ G EG+P +L + Sbjct: 173 LARLNREHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDLFRR 221 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 121 bits (304), Expect = 2e-29 Identities = 96/300 (32%), Positives = 149/300 (49%), Gaps = 17/300 (5%) Query: 1 METIVRVEHCHKTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHP 60 M ++ VE K YG+ AL +SFS GE LGPNGAGKTT I++L G +R Sbjct: 1 MGVVIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPT--- 57 Query: 61 ETRVEVFGLDP-EVDELAIKQRTGVVQQENNLDDELNVVQNLKIFARFYRMKPSRARTRI 119 VFG++ +++R G V E V ++ + R+ +R + Sbjct: 58 SGSARVFGVELYNPGASGVRRRVGYVPGEFEF---YGGVSGGRMLDYWCRLVGGCSRGVV 114 Query: 120 EELLEFMELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWD 179 ELLE L +R V S GMK+ L + A ++P+L+ +DEPTTGLDP R + D Sbjct: 115 RELLEAFPLPLER--AVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLD 172 Query: 180 RIRALTRQGVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVEKH---IEPHVVE 236 +R+ R+GVTV ++H + E +ADR+ ++ G + + L+ K ++ V + Sbjct: 173 FVRSKAREGVTVFFSSHVLSEVQRVADRVGLLRSGVLVALEDVSSLLRKSGKVVKARVSK 232 Query: 237 VLIPSYTLPSGDSLRVEHSEERTLIYAPSREKLEA-LTAELPAG--SYFIRPSTLEDLFL 293 L P + D +RV S + S + LE+ L L AG +R +TLE++F+ Sbjct: 233 NLSPDRL--AVDGVRVIRSNGELELVVTSGKALESVLRMLLDAGLEDLEVRDATLEEVFM 290 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 118 bits (296), Expect = 2e-28 Identities = 79/236 (33%), Positives = 124/236 (52%), Gaps = 12/236 (5%) Query: 5 VRVEHCHKTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYG--KARRDPHPET 62 VR+++ H +YG AL +SFS A+LGP+G GKTTM+K++ G K RR Sbjct: 6 VRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFG 65 Query: 63 RVEVFGLDPEVDELAIKQRTGVVQQENNLDDELNVVQNLKIFARFYRMKPSRARTRIEEL 122 V+ GL PE ++ G V Q+ L + V N+ R R ++E Sbjct: 66 GVDYTGLPPE------RRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWA 119 Query: 123 LEFMELSEKRD---QPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWD 179 LE + L+ R+ + V LSGG ++R+ +ARA+ +P +L LDEP + LD ++RQ + Sbjct: 120 LETVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLA 179 Query: 180 RIRALTRQ-GVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVEKHIEPHV 234 ++ L R+ G T++ TH EA +AD ++IM G + G P E+ + +V Sbjct: 180 ELKRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEVYTRPANVYV 235 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 117 bits (293), Expect = 4e-28 Identities = 79/233 (33%), Positives = 121/233 (51%), Gaps = 7/233 (3%) Query: 1 METIVRVEHCHKTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHP 60 M I+ V +K +G AL +SFS RGE V L+GPNGAGKTT+ I+ G D Sbjct: 1 MTIILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPD--- 57 Query: 61 ETRVEVFGLDPEVDELAIKQRTGVVQQENNLDD--ELNVVQNLKIFARFYRMKPSRARTR 118 RV G+D + R G+ + + L V+ N+ + A AR R Sbjct: 58 RGRVIYKGVDITGWPAYRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARER 117 Query: 119 IEELLEFMELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDP-QVRQLI 177 E ++ + L+ K D K L+ K+RL +ARAL QPELL LDE GL P +V L+ Sbjct: 118 AMEAIDMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLV 177 Query: 178 WDRIRALTRQGVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVEKHI 230 + + ++++G+T+++ H M + A+R+I++ G + EG PRE+ + Sbjct: 178 YTLLE-ISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVASNKL 229 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 113 bits (283), Expect = 5e-27 Identities = 73/230 (31%), Positives = 116/230 (50%), Gaps = 5/230 (2%) Query: 1 METIVRVEHCHKTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHP 60 M V K +G A+ +SFS G GE ++GPNG+GKTT+++++ G R Sbjct: 1 MGCTVEARGLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGS 60 Query: 61 ETRVEVFGLDPEVDELA-IKQRTGVVQQENNLDDELNVVQNLKIFARFYRMKPSRARTRI 119 V V G D D + G Q+ + + + + + + P AR Sbjct: 61 ---VRVCGYDVWGDGWREARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREA 117 Query: 120 EELLEFMELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWD 179 +LE + + + V LSGG +R L IA AL + PE++ LDEP +GLD + R+ +W Sbjct: 118 RRVLEMLGFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWA 177 Query: 180 RIRALTRQGVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVEKH 229 +R + G TVL ++H +EA +DR++IM G G PREL++++ Sbjct: 178 SLRKAFK-GRTVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPRELIQRY 226 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 112 bits (281), Expect = 9e-27 Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 5/225 (2%) Query: 5 VRVEHCHKTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRV 64 +R+E K +G AL +S + GE LLGP+G GKTT ++++ G D E RV Sbjct: 4 IRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPD---EGRV 60 Query: 65 EVFGLDPEVDELAIKQRTGVVQQENNLDDELNVVQNLKIFARFYRMKPSRARTRIEELLE 124 + D + + ++ T +V Q L + V N+ + ++ S R+ E Sbjct: 61 YIGSRDVTMLK-PYERNTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVRWAAE 119 Query: 125 FMELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRI-RA 183 +E+ D+ LSGG ++R+ +ARA++ +PE+L +DEP + LD +R + + I R Sbjct: 120 LLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRL 179 Query: 184 LTRQGVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVEK 228 R GVT++ TH EEA I+ R+ +M+ G G P E+ EK Sbjct: 180 QKRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVYEK 224 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 111 bits (277), Expect = 3e-26 Identities = 75/216 (34%), Positives = 116/216 (53%), Gaps = 14/216 (6%) Query: 20 LTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRVEVFGLDPEVDELA-I 78 L +S S GE L G NGAGKTT +++L G RD V G+DP + Sbjct: 30 LRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRD---SGEARVLGVDPWGGGFERV 86 Query: 79 KQRTGVVQQENNLDDELNVVQNLKIFARFYRMKPSRARTRIEELLE---FMELSEKRDQP 135 K G + ++ ++ + L ++N+ +AR Y +EEL+E F + D Sbjct: 87 KGEVGYLPEDASVYERLTGMENILFYARLYS-----GWRDVEELVENAVFYSGLSREDLA 141 Query: 136 VKA--LSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRALTRQGVTVLL 193 +A S GMKRRL++ L+++P L+ LDEPT+G+DP I +R L+R+G +L+ Sbjct: 142 RRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSREGRAILV 201 Query: 194 TTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVEKH 229 TTH + A IADR+ I+ G+++ G P LVE++ Sbjct: 202 TTHDLALAEEIADRVTIIHGGSTVASGPPYRLVEEY 237 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 107 bits (268), Expect = 3e-25 Identities = 80/246 (32%), Positives = 120/246 (48%), Gaps = 8/246 (3%) Query: 5 VRVEHCHKTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRV 64 VR+E K +G AL + GE V LLGP+G GKTT ++I+ G R D RV Sbjct: 4 VRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAG---RV 60 Query: 65 EVFGLDPEVDELAIKQRT-GVVQQENNLDDELNVVQNLKIFARFYRMKPSRARTRIEELL 123 G D V L K R +V Q L + V N+ + ++ R+ Sbjct: 61 YFDGRD--VTGLPPKDRNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEIVRRVRWAA 118 Query: 124 EFMELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRA 183 E +E+ D+ LSGG ++R+ +ARA++ +PE+L +DEP + LD +R + I+ Sbjct: 119 ELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKK 178 Query: 184 LTRQ-GVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVEKHIEPHVVEVL-IPS 241 L R+ GVT++ TH EA I DRI++M+ G G P ++ + V + P Sbjct: 179 LQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDVYHRPANTFVATFIGSPQ 238 Query: 242 YTLPSG 247 L SG Sbjct: 239 MNLFSG 244 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 105 bits (263), Expect = 1e-24 Identities = 83/303 (27%), Positives = 146/303 (48%), Gaps = 27/303 (8%) Query: 12 KTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRVEVFGLDP 71 K +G A ++ F+ G + +LGPNGAGKTT++K + G + + V G++P Sbjct: 12 KRFGQRYAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAG---EILVEGVNP 67 Query: 72 EVDELA-IKQRTGVVQQENNLDDELNVVQNLKIFARFYRMKPSRARTRIEELLEFMELSE 130 + R G V + + L+ AR AR R E LE + L+ Sbjct: 68 RSPGFEKLLPRIGYVPELPVVPLWTTPCILLETLARLEGYTSVEARVRAREALEVVGLAG 127 Query: 131 KRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRALTRQGVT 190 + + P+ LS G ++R+++A+A + + ELL LDEP +GLDP+ + + +R + R+G T Sbjct: 128 ECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAREGAT 187 Query: 191 VLLTTHYMEEAYHIADRIIIM----------DHGTSLLEGNPRELVEKHIEPHVVEVL-- 238 V++++H + E IA ++++ + + L G PR ++ VEVL Sbjct: 188 VIVSSHILRELEDIATHVLVLKTDQLFYGSIEELRAWLSGTPRIILSVAEPERAVEVLRR 247 Query: 239 --IPSYTLPSGDSL--RVEHSEERTLIYAPSREKLEALTAELPAGSYFIRPSTLEDLFLK 294 +YT+ G L VE +++ P+R L + Y + ++LE+ +LK Sbjct: 248 GGFNAYTINKGGQLVVAVEGADD------PARVLSLLLAENIEISEYRVEKASLEEAYLK 301 Query: 295 ITG 297 + G Sbjct: 302 LVG 304 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 103 bits (257), Expect = 5e-24 Identities = 64/230 (27%), Positives = 118/230 (51%), Gaps = 12/230 (5%) Query: 4 IVRVEHCHKTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETR 63 I+++E YG + L D+S RG ++GPNGAGK+T++K ++G + Sbjct: 5 IIKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTT-----VYK 59 Query: 64 VEVFGLDPEVDELAIKQRTGV----VQQENNLDDELNVVQNLKIFARFYRMKPSRARTRI 119 V + +V + R + + Q N+ EL V +NL++ Y + R R+ Sbjct: 60 GRVLFENTDVTHMPPHDRAKIGMTFIFQLENIFRELTVYENLRLAG--YDLPEDVFRDRL 117 Query: 120 EELLE-FMELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIW 178 EE+ F L E+ Q LSGG ++ L +A ++ +P++ +DEPT GL P++ + + Sbjct: 118 EEVFSMFPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVL 177 Query: 179 DRIRALTRQGVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVEK 228 +R L ++G TV+L ++ + I D+ +++ +G +G EL+ + Sbjct: 178 SYVRILNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDGPAEELLAR 227 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 102 bits (255), Expect = 9e-24 Identities = 82/234 (35%), Positives = 123/234 (52%), Gaps = 15/234 (6%) Query: 1 METIVRVEHCHKTYGTF-RALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPH 59 M ++ V + Y F + +LS S +G L+GPNGAGKTT++K + G + + Sbjct: 1 MGPLLNVSNVEIMYHPFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERG 60 Query: 60 PETR--VEVFGLD---PEVDELAIKQRTGV--VQQENNLDDELNVVQNLKIFARFYRMKP 112 TR +++ G D E DE+A R GV V + + EL +NL A Y Sbjct: 61 RVTRGSIQLEGEDITNREPDEIA---RRGVIYVMEGRRIFKELTTEENLVSVA--YAAGA 115 Query: 113 SRARTRIEELLEFMELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQ 172 SR R L F L E+ + LSGG ++ L IA ALL +P+LL LDEP+ GL P+ Sbjct: 116 SRDDIR-SVLSYFPRLKERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPK 174 Query: 173 VRQLIWDRIRALTR-QGVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPREL 225 + I+ I+ L R +G+T+LL +A I+D ++++G +LEG+ EL Sbjct: 175 ITSQIYATIKMLHREEGLTILLAEQNARKALEISDYGYVIENGRIVLEGSAEEL 228 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 101 bits (251), Expect = 3e-23 Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 7/226 (3%) Query: 5 VRVEHCHKTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRV 64 V++E K +G A+ D++ E V++LGP+G+GKTT++ ++ G + +R Sbjct: 4 VKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGI-----YKPSRG 58 Query: 65 EVFGLDPEVDELAIKQRT-GVVQQENNLDDELNVVQNLKIFARFYRMKPSRARTRIEELL 123 ++ D +V +L +R G+V Q L + V +N+ R + ++ + Sbjct: 59 RIYFNDVDVTDLPPNKRNIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVA 118 Query: 124 EFMELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRA 183 + + + D+ LSGG ++R+ +ARAL+ +PE+L LDEP + LD +R I ++ Sbjct: 119 KLLGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKK 178 Query: 184 LTRQ-GVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVEK 228 L ++ G+T + TH EA +ADRI I+ G G P ++ K Sbjct: 179 LQKELGITAIYVTHDQSEALAMADRIAIIASGVIQQVGKPWDVYYK 224 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 101 bits (251), Expect = 3e-23 Identities = 75/249 (30%), Positives = 119/249 (47%), Gaps = 12/249 (4%) Query: 5 VRVEHCHKTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRV 64 V E K G L D+S + RG ++GPNGAGKTT+ + L G R D RV Sbjct: 9 VEAEGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRAD---RGRV 65 Query: 65 EVFGLDPEVDELAIKQRTGVVQQENNLDDELNVVQNLKIFARFYRMKPSRARTRIEELLE 124 + G E ++ +R + ++ + + L+++A Y ++ +EE Sbjct: 66 ALLGEPVERAGGSLFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLEGY--LEEASR 123 Query: 125 FMELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDP----QVRQLIWDR 180 L + + V++ S GM+RRL++A L +P L LDEPT GLDP +R+L+ + Sbjct: 124 LSGLGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEY 183 Query: 181 IRALTRQGVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVEKHIEPHVVEVLIP 240 R GVTVLL++H M E + I ++ G + G+P E V + + E + Sbjct: 184 SE---RHGVTVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGEAVRRTGASSLEEAYVA 240 Query: 241 SYTLPSGDS 249 T G+S Sbjct: 241 LVTGGGGES 249 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 100 bits (249), Expect = 5e-23 Identities = 77/227 (33%), Positives = 115/227 (50%), Gaps = 6/227 (2%) Query: 2 ETIVRVEHCHKTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYG--KARRDPH 59 E ++ V+ YG F+AL +S +GE VALLG NGAGKTT + + G K R Sbjct: 4 EPLLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSI 63 Query: 60 PETRVEVFGLDPEVDELAIKQRTGVVQQENNLDDELNVVQNLKIFARFYRMKPSRARTRI 119 ++ GL P +++ V + + L V +NL++ A R K + Sbjct: 64 IWQGRDITGL-PAFKR--VEEGISHVPEGRGIFPRLTVYENLRVAASTRRAKEHFQDSLE 120 Query: 120 EELLEFMELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQV-RQLIW 178 + F L +R Q LSGG ++ L IARAL+ +P LL +DEP+ GL P++ R +I+ Sbjct: 121 QVYTIFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIY 180 Query: 179 DRIRALTRQGVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPREL 225 R GVT+LL + + +ADR +M+ G +LEG EL Sbjct: 181 LASRLREELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDEL 227 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 100 bits (248), Expect = 6e-23 Identities = 77/267 (28%), Positives = 129/267 (48%), Gaps = 10/267 (3%) Query: 18 RALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRVEVFGLDPEVDEL- 76 +AL ++ F+ GE ALLG NGAGKTT+++ILYG+ + T E++ +V Sbjct: 27 KALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIK-----PTMGEIYVWGRKVSWRG 81 Query: 77 ---AIKQRTGVVQQENNLDDELNVVQNLKIFARFYRMKPSRARTRIEELLEFMELSEKRD 133 AI+ +V Q+ L + + V +N+ I+ + S AR R E E + L Sbjct: 82 PWDAIRNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRTLETAERLGLEIDLA 141 Query: 134 QPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRALTRQGVTVLL 193 + V L G ++R+ I +AL ++L LDEPT+ L P + ++ +R L GV+V+ Sbjct: 142 KTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLRLLKDMGVSVVY 201 Query: 194 TTHYMEEAYHIADRIIIMDHG-TSLLEGNPRELVEKHIEPHVVEVLIPSYTLPSGDSLRV 252 TH + E +ADR+ ++ G S + + E+ + +V L P P G R Sbjct: 202 ITHKLGEVVRVADRVTVLRRGRVSAVIEDVGRTSEEELARLMVGTLPPPTPRPPGKVGRE 261 Query: 253 EHSEERTLIYAPSREKLEALTAELPAG 279 S + E++ ++ E+ G Sbjct: 262 LLSVRGVSVVVDGVERVREVSLEVREG 288 Score = 57.0 bits (136), Expect = 6e-10 Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 8/205 (3%) Query: 22 DLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRVEVFGLDPEVDELAIKQR 81 ++S GE V + G G G+ ++ + G RR V+ ++ +D Sbjct: 280 EVSLEVREGEIVGIAGVAGNGQEELVDAIIG-LRRPVRGSIEVQGRRIEGSLDFYRAGGG 338 Query: 82 TGVVQQENNLDDELNVVQNLKIFARFYRMKPSRARTRIEELLE-----FMELSEKRDQPV 136 + L + +V +N+ R+R+E+L F ++ PV Sbjct: 339 YIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRRSRLEDLFRRLVERFRLVARSPWTPV 398 Query: 137 KALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRALTRQGVTVLLTTH 196 LSGG ++++++ +L +LL PT GLD + + + L RQG +LL + Sbjct: 399 GRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTSFVRNLLSELARQGAGILLVST 458 Query: 197 YMEEAYHIADRIIIMDHG--TSLLE 219 ++E ++DRI +M G T +LE Sbjct: 459 DLDEILELSDRIYVMSGGRVTGVLE 483 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 100 bits (248), Expect = 6e-23 Identities = 68/234 (29%), Positives = 117/234 (50%), Gaps = 27/234 (11%) Query: 14 YGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYG--KARRDPHPETRVEVFGLDP 71 +G AL ++S RGE + ++GPNGAGKT+++ ++ G K +R ++ GL P Sbjct: 11 FGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDITGLKP 70 Query: 72 EVDELAIKQRTGVVQQENNLDDELNVVQNLKIFAR-------------FYRMK--PSRAR 116 RT Q + L + V++N+ + +R K AR Sbjct: 71 HQRITLGLSRTF---QHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWEVEAR 127 Query: 117 TRIEELLEFMELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQL 176 R E +++ ++L E R P+ AL G+++++ +A AL PE++ +DEP GL + ++ Sbjct: 128 ERAEHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEKE- 186 Query: 177 IWDRIRALTRQG----VTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELV 226 D +RA+ T++L H ME + DR+++MD+G + EG P E V Sbjct: 187 --DIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHEAV 238 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 99.4 bits (246), Expect = 1e-22 Identities = 71/246 (28%), Positives = 123/246 (50%), Gaps = 20/246 (8%) Query: 2 ETIVRVEHCHKTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPE 61 + I+RVE K +G AL ++ RG+ L+GPNG+GKTT++ ++ G + D Sbjct: 4 DIILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGG-- 61 Query: 62 TRV-----EVFGLDP-EVDELAIKQRTGVVQQENNLDDELNVV-------QNLKIFA--- 105 RV ++ G+ P E+ +L + + + + NL NV+ +N+ + Sbjct: 62 -RVLFKGRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLAR 120 Query: 106 RFYRMKPSRARTRIEELLEFMELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEP 165 R + RA R E+L ++ L D+ LSGG + L IARA++ E++ +DEP Sbjct: 121 RLWLGFEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEP 180 Query: 166 TTGLDPQVRQLIWDRIRALTRQ-GVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRE 224 G++P++ I +RI+ L R+ G+T L+ H + DR+ M G + G P E Sbjct: 181 AAGVNPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDE 240 Query: 225 LVEKHI 230 ++ + Sbjct: 241 VLNNPV 246 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 96.3 bits (238), Expect = 9e-22 Identities = 66/235 (28%), Positives = 120/235 (51%), Gaps = 14/235 (5%) Query: 1 METIVRVEHCHKTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHP 60 M ++ V +Y + L + S GE + ++GP+G+GK+T++K + R P Sbjct: 1 MARLLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAI----PRLVEP 56 Query: 61 ETRVEVF-GLDPEVDELA------IKQRTGVVQQENNLDDELNVVQNLKI-FARFYRMKP 112 ++ VF G+D V L+ ++++ G + Q +L + V++N+ + + Sbjct: 57 DSGSIVFRGVD--VTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSR 114 Query: 113 SRARTRIEELLEFMELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQ 172 A R + L + + + + LSGG ++R +ARAL +P++L LDEPT+ LDP+ Sbjct: 115 RDAEERAVKYLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPE 174 Query: 173 VRQLIWDRIRALTRQGVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVE 227 R + + + + G +++ TH + A +ADR+ M+ G EG P ELVE Sbjct: 175 SRADVLEALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSELVE 229 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 94.0 bits (232), Expect = 4e-21 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 9/226 (3%) Query: 5 VRVEHCHKTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRV 64 +R+E K +G A+ + S GE LLGP+G GKTT ++++ G D E R+ Sbjct: 4 IRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPD---EGRI 60 Query: 65 EVFGLDPEVDELAIKQRTGVVQQENNLDDELNVVQNLKIFARFYR----MKPSRARTRIE 120 + G D + + +V Q L ++V N+ R + R R+ Sbjct: 61 LIDGEDVTFKDPK-DRNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVI 119 Query: 121 ELLEFMELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDR 180 E+ + + + + D+ LSGG ++R+ +ARAL+ +P++ +DEP + LD +R + Sbjct: 120 EVAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAE 179 Query: 181 IRALTRQ-GVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPREL 225 ++ L + +T + TH EA +ADRI +M+ G + G P E+ Sbjct: 180 LKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEV 225 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 93.6 bits (231), Expect = 6e-21 Identities = 64/219 (29%), Positives = 116/219 (52%), Gaps = 14/219 (6%) Query: 20 LTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRVEVFGLDPEV---DEL 76 L +SF A G A++GP+G+GK+T+I+++ P EV+ + V D Sbjct: 21 LKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVMKEDPY 80 Query: 77 AIKQRTGVVQQENNLDDELNVVQNLKIFARFYRMKPSRARTRIEELLEFM--------EL 128 I++ TG+V QE N + + +N+ I + + + ++ + ++E++E+ E+ Sbjct: 81 NIRRYTGMVFQEPNPFPHMTIYENVAIGPKLHGL--AKNKKELDEIVEWALKMAHLWDEV 138 Query: 129 SEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRALTRQG 188 ++ LSGG ++RL +ARAL +P +L LDEPT +DP I I ++ Sbjct: 139 KDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKEE 198 Query: 189 V-TVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELV 226 + TV++ TH ++A I+D+I+ + G + G +ELV Sbjct: 199 MATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELV 237 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 89.0 bits (219), Expect = 1e-19 Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 21/206 (10%) Query: 19 ALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRVEVFGLD------PE 72 AL ++S S RGE +A++GP+G+GKTT++ I+ G R + RV V G + E Sbjct: 29 ALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAG---RVIVDGFEVSSAGGEE 85 Query: 73 VDELAIKQRTGVVQQENNLDDELNVVQNLKIFARFYRMKPSRARTRIEELLEFMELSEKR 132 + + +R G V Q++NL L ++N+ + + R R +ELL + L K Sbjct: 86 LRRFRL-ERVGYVFQQHNLIPTLTALENILLPMA---LAGKANRLRGQELLRRVGLGGKE 141 Query: 133 DQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRALTRQ----G 188 + + LSGG ++RL +A AL N P ++ DEPT LD + I +R L + G Sbjct: 142 RRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERI---VRILLEEAHSRG 198 Query: 189 VTVLLTTHYMEEAYHIADRIIIMDHG 214 TV+LTTH A +ADR+ +++ G Sbjct: 199 KTVVLTTHDPRVA-RMADRVAVIEDG 223 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 86.7 bits (213), Expect = 7e-19 Identities = 79/276 (28%), Positives = 125/276 (45%), Gaps = 24/276 (8%) Query: 2 ETIVRVEHCHKTYGTF----RALTDLSFSAGRGECVALLGPNGAGKTT----MIKILY-- 51 + I+ VE+ + T+ +A+ D+SF RGE L+G G GK+ + +++Y Sbjct: 7 DPIIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPP 66 Query: 52 -----GKARRDPHPETRVEVFGLDP-EVDELAIKQRTGVVQQENNLDDELNVV-----QN 100 GK P P RV++ LD E+ + ++ + Q + D L + + Sbjct: 67 GRIVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGET 126 Query: 101 LKIFARFYRMKPSRARTRIEELLEFMELSEKRDQPVK-ALSGGMKRRLVIARALLNQPEL 159 + R ++ R M EKR + LSGGMK+R VI +L N+P+L Sbjct: 127 MLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKL 186 Query: 160 LFLDEPTTGLDPQVRQLIWDRIRALTRQ-GVTVLLTTHYMEEAYHIADRIIIMDHGTSLL 218 L DEPTT LD ++ I D + L R+ G+T+LL TH + DR+ +M G + Sbjct: 187 LIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVE 246 Query: 219 EGNPRELVEKHIEPHVVEVLIPSYTLPSGDSLRVEH 254 E EL + P+ LI + P +EH Sbjct: 247 EAPVDELFSNPLHPY-TRALIRAVPNPLAKIENLEH 281 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 84.0 bits (206), Expect = 4e-18 Identities = 67/230 (29%), Positives = 107/230 (46%), Gaps = 7/230 (3%) Query: 15 GTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYG--KARRDPHPETRVEVFGLDPE 72 G AL ++ S G ALLG NGAGKTT++K + G K R+ V+ + L P+ Sbjct: 16 GGVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKG---RILVDGYELRPK 72 Query: 73 VDELAIKQRTGVVQQENNLDDELNVVQNLKIFARFYRMKPS--RARTRIEELLEFMELSE 130 +++ + Q + + ++L + K +ART + E E + L+ Sbjct: 73 GPGDSLRSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAEASEALGLNI 132 Query: 131 KRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRALTRQGVT 190 D+ + + ++RL + +AL + LDEPTT L P+ + + L G Sbjct: 133 DPDRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAASGAA 192 Query: 191 VLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVEKHIEPHVVEVLIP 240 VLL TH + EA ADR++I+ G + EG P E+ + EVL P Sbjct: 193 VLLVTHRIGEAMEHADRLVILRKGVKVYEGPPPSSTEEVAKLMFGEVLAP 242 Score = 43.9 bits (102), Expect = 5e-06 Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 14/196 (7%) Query: 29 RGECVALLGPNGAGKTTMIKILYGKARRDPHPETRVEVFGLDPEVDELAIKQRTGV-VQQ 87 +GE V + G G G+ + +++ G R P + R+ + G+D ++R G+ V Sbjct: 279 QGEVVGVAGVAGNGQEELFEVIVGL--RKP-AKGRILIAGVDVTRAPPLARRRLGLGVIP 335 Query: 88 ENNLDDEL--------NVVQNLKIFARFYRMKPSRARTRIEELLEFMELSEKRD-QPVKA 138 E L L N+ ++ + + EE++ M + Q V Sbjct: 336 EERLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGIKAVSPRQMVDE 395 Query: 139 LSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRALTRQGVTVLLTTHYM 198 LSGG +RLV+AR L +P LL P GLD + +Q + + +R + +G VL+ + Sbjct: 396 LSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRMSSERG-GVLVIDEDL 454 Query: 199 EEAYHIADRIIIMDHG 214 + ++++I + G Sbjct: 455 DFLLRVSNKIYVASGG 470 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 82.8 bits (203), Expect = 1e-17 Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 8/229 (3%) Query: 18 RALTDLSFSAGRGECVALLGPNGAGKTTMIKILYG-KARRDPHPETRVEVFGLDPEVDEL 76 RA+ + GE +A++G +G GKTT+ K + G + D R E+ + Sbjct: 36 RAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARDR 95 Query: 77 AIKQRTGVVQQE--NNLDDELNVVQNLKIFARFYRM-KPSRARTRIEELLEFMELSEKRD 133 ++++ +V Q+ +LD + V + + + + AR R E+LE + L+ R+ Sbjct: 96 RLRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETVGLTPGRE 155 Query: 134 ---QPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRALTRQ-GV 189 + LSGG ++R+ IAR L+ +PE++ DEP + +D +R I D I R+ G Sbjct: 156 FYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTGA 215 Query: 190 TVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVEKHIEPHVVEVL 238 T++L TH + A +ADRI +M G + G PR ++E P+ ++ Sbjct: 216 TIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVIENPRHPYTAALV 264 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 82.0 bits (201), Expect = 2e-17 Identities = 70/244 (28%), Positives = 118/244 (48%), Gaps = 28/244 (11%) Query: 18 RALTDLSFSAGRGECVALLGPNGAGKTT-------MIKILYGKARRDPHPET--RVEVFG 68 +A+ +SFS RGE L+G +G GKTT ++K G+ P E +E G Sbjct: 48 KAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERRG 107 Query: 69 L----DPEVDELAIKQRT--------GVVQQE--NNLDDELNVVQNLKIFARFYRMKPSR 114 + D VD LA+ +R +V Q+ +L+ + + L+ + + +R Sbjct: 108 VKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNAR 167 Query: 115 AR----TRIEELLEFMELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLD 170 R R+ E ++ S+ D+ LSGG ++R+ IARA + P L+ DEP + LD Sbjct: 168 EREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSMLD 227 Query: 171 PQVRQLIWDRIRALTRQ-GVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVEKH 229 +R I + + + G ++L TH + A +I DRI +M G + G+ R ++E+ Sbjct: 228 VSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDARRIIERP 287 Query: 230 IEPH 233 I P+ Sbjct: 288 IHPY 291 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 79.0 bits (193), Expect = 1e-16 Identities = 66/235 (28%), Positives = 120/235 (51%), Gaps = 24/235 (10%) Query: 12 KTY-----GTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPET---- 62 KTY G +A+ +SF+ RGE + + G +G+GK+T+ + G P P Sbjct: 12 KTYFYTLRGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLV---PPPGRIVGG 68 Query: 63 RVEVFGLD-PEVDELAIKQRTGVVQQENNLDDELNVV-------QNLKIFARFYR-MKPS 113 R+ + G+D + E ++++ + +NV+ + ++ + +R + Sbjct: 69 RIMIDGMDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRH 128 Query: 114 RARTRIEELLEFMELSEK-RDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQ 172 AR R+ ELLE + L D+ LSGG K+R+VIA AL +P+++ DEPTT LD Sbjct: 129 EARQRVYELLESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVV 188 Query: 173 VRQLIWDRIRALT-RQGVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELV 226 V+ I + ++ L + ++++L TH + +A+ ++IM +G + E P + V Sbjct: 189 VQAQILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIM-YGGKIAEYGPSDAV 242 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 78.2 bits (191), Expect = 2e-16 Identities = 69/288 (23%), Positives = 139/288 (48%), Gaps = 43/288 (14%) Query: 12 KTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKAR---------------- 55 K G +A+ +S S +GE + ++G +G+GKTT+ K + G R Sbjct: 22 KVIGYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELE 81 Query: 56 ----------------RDPHPETRVEVFGLDPEVDELA----IKQRTGVVQQE--NNLDD 93 R+ R + DP + + +++ +VQQ+ ++L+ Sbjct: 82 EAVSIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNP 141 Query: 94 ELNVVQNLKIFARFYRMKPSR--ARTRIEELLEFMELSEK-RDQPVKALSGGMKRRLVIA 150 + V + + R + ++ S + R+ E+LE + L ++ D+ LSGG ++R+ IA Sbjct: 142 RMKVGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIA 201 Query: 151 RALLNQPELLFLDEPTTGLDPQVRQLIWDRIRALTRQ-GVTVLLTTHYMEEAYHIADRII 209 RAL P++L LDEPT+ LD ++ I +R L ++ G+T LL TH + +++ ++ Sbjct: 202 RALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVV 261 Query: 210 IMDHGTSLLEGNPRELVEKHIEPHVVEVLIPSYTLPSGDSLRVEHSEE 257 +M G ++E P+ ++ + ++L+ + +P S R++ ++ Sbjct: 262 VMYSG-KIMESAPKHILFTNPLHPYTKLLLSAVPIPDPRSRRIKEFKD 308 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 77.8 bits (190), Expect = 3e-16 Identities = 71/252 (28%), Positives = 118/252 (46%), Gaps = 13/252 (5%) Query: 9 HCHKTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILY------GKARRDPHPET 62 H + G RA+ +S S +GE ++++G +G+GK+T+ + G+ + Sbjct: 12 HYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRILYS 71 Query: 63 RVEVFGLDPEVDELAIKQRTGVVQQENN--LDDELNVVQNL--KIFARFYRMKPSRARTR 118 V++ L E + G+V Q+ LD V + + S A + Sbjct: 72 GVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLASSGSEAESM 131 Query: 119 IEELLEFMELSEKRDQPVK-ALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLI 177 + LE + + R LSGG ++R+ IA A+ +P++L DEPTT LD V+ I Sbjct: 132 AGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKI 191 Query: 178 WDRIRALTRQ-GVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVEKHIEPHVVE 236 D ++ L + G+TV+L TH + A +DRI +M G + G ++V I P+ E Sbjct: 192 MDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDVVSNPIHPY-TE 250 Query: 237 VLIPSYTLPSGD 248 +LI S P D Sbjct: 251 MLIKSVPDPWED 262 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 74.7 bits (182), Expect = 3e-15 Identities = 69/226 (30%), Positives = 105/226 (46%), Gaps = 13/226 (5%) Query: 5 VRVEHCHKTYGTFR-ALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETR 63 VR+E Y T L +SFS G VALLGPNG+GKTT++++L G + R Sbjct: 6 VRLEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPS---RGR 62 Query: 64 VEVFGLDPEVDELAIKQRTGVVQQENNLDDELNVVQNLKIFARFYRMKPSRARTRIEELL 123 VEV G P +++ G +D L V+ ++ + R EE+L Sbjct: 63 VEVCGSPPG----RVRRMLGYAPASPEVDPRLKAVEVALLYRYGVSEGVAWGRRDWEEVL 118 Query: 124 EF---MELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDR 180 M + E + LS G +R +++A L +P L LDEP + LD + + Sbjct: 119 AALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLV 178 Query: 181 IRALTRQGVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELV 226 +R+L R T++ TTH A AD +I++ G +G P +V Sbjct: 179 LRSL-RGRATIVYTTHDPLAAM-AADSVIMLREGLLHAQGPPEAVV 222 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 74.3 bits (181), Expect = 3e-15 Identities = 63/219 (28%), Positives = 100/219 (45%), Gaps = 19/219 (8%) Query: 1 METIVRVEHCHKTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHP 60 M ++R+E+ K G L +S + G GE V + G NG+GKTT++++ G A Sbjct: 1 MAALLRLENVWKMLGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAE----- 55 Query: 61 ETRVEVFGLDPEVDELAIKQRTGVVQQENNLDDELNVVQNLKIFARFYRMK----PSRAR 116 +R V P + G V + +L V +N++ F+ + P A Sbjct: 56 PSRGRVSWGCPRGPRGCV----GYVGHTPMVYGDLTVWENVEFFSSLHGGSLGDYPLAA- 110 Query: 117 TRIEELLEFMELSEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQL 176 E + L + LS G +RRL + RALL +P LL LDE TGLD + Sbjct: 111 ----EAWRLLGLEKYGSHLASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEA 166 Query: 177 IWDRIRALTRQGVTVLLTTHYMEEAY-HIADRIIIMDHG 214 + +R +G+ +L+TT +E Y +A R+ + G Sbjct: 167 LSRLLRLALGEGLALLMTTPLLEPRYLGLASRVYTLQDG 205 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 70.5 bits (171), Expect = 5e-14 Identities = 62/238 (26%), Positives = 120/238 (50%), Gaps = 16/238 (6%) Query: 18 RALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRVEVFGLDPEVDELA 77 +A+ +++ RG+ + L+G +G+GKTT +++ R + R+ G+D V +L Sbjct: 50 KAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVIL---RLEEPTGGRIFFDGID--VMKLR 104 Query: 78 ------IKQRTGVVQQE--NNLDDELNVVQNLKIFARFYRMKPSRARTRIEELLEFMELS 129 ++R ++ Q+ +L+ + + + + +K + I LL + L+ Sbjct: 105 GRGLKEFRRRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLLYQVGLN 164 Query: 130 EKR-DQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRALTRQ- 187 E + SGG ++R+ IAR L +PE + LDEPT+ LD V+ I + ++ L R+ Sbjct: 165 ETHLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKY 224 Query: 188 GVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVEKHIEPHVVEVLIPSYTLP 245 +T L +H + +++D I +M G + G E+ EK + P+ +VL+ S +P Sbjct: 225 SLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEVFEKPLHPY-TKVLLESIPVP 281 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 68.6 bits (166), Expect = 2e-13 Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 24/197 (12%) Query: 30 GECVALLGPNGAGKTTMIKILYGKARRDPHPETRVEVFGLDPEVDELAIKQRTGVVQQ-- 87 G+ V LLG NG GKTT ++IL G+ + + RVE G +PE DE+ + R +Q Sbjct: 106 GQVVGLLGRNGTGKTTALRILAGELKPNLG---RVE--GGEPEWDEILKRFRGSELQTYF 160 Query: 88 ENNLDDELNVVQNLKIFARFYRMKPSRARTRIEELLE-------FMELSEKR------DQ 134 +D +L V ++ + + P R + R+ +LL+ +EL+E+ D+ Sbjct: 161 RKLVDGKLRVAHKIQ----YVELVPRRLKGRVRDLLKRADERGVALELAEQVGLDKVFDR 216 Query: 135 PVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRALTRQGVTVLLT 194 V+ LSGG ++++I L + DEP++ LD + R + I R G V++ Sbjct: 217 DVRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAARPGAYVMVV 276 Query: 195 THYMEEAYHIADRIIIM 211 H + +++D + I+ Sbjct: 277 EHDLAVLDYVSDLVHIL 293 Score = 58.2 bits (139), Expect = 3e-10 Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 14/183 (7%) Query: 30 GECVALLGPNGAGKTTMIKILYGKARRDPHPETRVEVFGLDPEVDELAIKQRTGVVQQEN 89 GE + + GPNG GKTT ++ L G + VE + P V++L + + + E+ Sbjct: 383 GEVIGVAGPNGIGKTTFVRTLAGALKP-------VEG-AVYPYVEDLRVSYKPQYISPES 434 Query: 90 NLDDELNVVQNLKIFARFYRMKPSRARTRIEELLEFMELSEKRDQPVKALSGGMKRRLVI 149 D V Q LK S EL++ M L + ++ V+ LSGG +++ + Sbjct: 435 LPD--ATVEQVLKAANPAILAPGSWLNL---ELVKRMRLDKLLERRVRTLSGGELQKVAV 489 Query: 150 ARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRALTR-QGVTVLLTTHYMEEAYHIADRI 208 A AL + ++ LDEP+ LD + R + IR + + L+ H + +++DRI Sbjct: 490 AAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALVVEHDLMILDYVSDRI 549 Query: 209 IIM 211 +++ Sbjct: 550 MLV 552 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 68.6 bits (166), Expect = 2e-13 Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 44/253 (17%) Query: 15 GTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRVEVFGLDPEVD 74 G AL + +GE +A++G +G GK+T+ + + R+ E Sbjct: 20 GVVNALDGVELDVYQGEILAIVGESGCGKSTLARSI-----------ARILPSNAVIEKG 68 Query: 75 ELAIKQRTG-VVQQENNLDDELNVVQNLKIFARFYRMKPSRA------------------ 115 + + +G V +DEL ++ KI + ++ PS A Sbjct: 69 SIILNLGSGNTVDLVRLSEDELVKIRG-KIVSMIFQ-DPSAALSPVHKVKKQVTDHVSGE 126 Query: 116 RTRIEELLEFMELSEKRDQPVK---------ALSGGMKRRLVIARALLNQPELLFLDEPT 166 + R+E++ + E+ +K P LSGGMK+R+VIA +L+ +P ++ DEPT Sbjct: 127 KRRVEKIAQ--EILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPT 184 Query: 167 TGLDPQVRQLIWDRIRALTRQ-GVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPREL 225 T LD V+ I + L + T++L TH + A IADRI +M G + + L Sbjct: 185 TALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVVEVADVFSL 244 Query: 226 VEKHIEPHVVEVL 238 E+ + P+ +L Sbjct: 245 FERPLHPYTKGLL 257 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 68.2 bits (165), Expect = 2e-13 Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 8/228 (3%) Query: 5 VRVEHCHKTYGTFRALTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRV 64 VRVE Y L+ ++ V ++GPNGAGKTT +K + G + RV Sbjct: 3 VRVEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKP---ARGRV 59 Query: 65 EVFGLDPEVDELAIKQRTGVVQQENNLDDELNVVQNLKIFARFYRMKP-SRARTRIEELL 123 + G + + + G V Q N +L+ + + R++ +RAR R E+L Sbjct: 60 FLDGFEATGRPEMVGRYAGYVPQ-NPSAPKLSPMTVREFVETSLRLRGVTRARERAVEVL 118 Query: 124 EFMEL-SEKRDQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIR 182 + + E + + LS GM +R+ IARA+ P++L +DEP +DP R I I Sbjct: 119 HTLGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIA 178 Query: 183 ALTRQGVTVLLTTHYMEEAYHIADRIIIMDHGTSLLEGNPRELVEKHI 230 L R+ + VL+T+H D I++++ + G P E+ + + Sbjct: 179 GLARERL-VLMTSHDPSLLLGHTDIIVVINRDL-IASGPPEEVYREDV 224 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 56.6 bits (135), Expect = 8e-10 Identities = 55/227 (24%), Positives = 107/227 (47%), Gaps = 22/227 (9%) Query: 20 LTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRVEVFGLDPEVDELAIK 79 L + F GE A++GPNG+GK+++ ++ G R+ + ++ + EL + Sbjct: 18 LNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMG---REIYEVVEGDILLDGESIKELPPE 74 Query: 80 QRT--GVVQQENNLDDELNVVQNLKIFARFYRM-------KPSRARTRIEELLEFM-ELS 129 +R G+ + + V + I A + KP+ + ++ + E+ +L Sbjct: 75 ERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKI-VKRMYEYATKLG 133 Query: 130 EKRD----QPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRALT 185 R+ + SGG K+R + +A++ P+++ LDEP +GLD +++ + I+ L Sbjct: 134 LDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGLKIVAEFIKQLR 193 Query: 186 RQGVTVLLTTHYMEEAYHI-ADRIIIMDHGTSLLEGN---PRELVEK 228 G V+L THY + DR+ ++ G+ L G R++ EK Sbjct: 194 DSGRGVMLITHYARLLNFVEPDRVTVLYRGSVLARGGAELARQVEEK 240 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 53.1 bits (126), Expect = 8e-09 Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 15/209 (7%) Query: 20 LTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRVEVFGLDPEVDELAIK 79 L +S A RG L GP G GK+T++++ G A TR+ L EV+ + Sbjct: 20 LRGVSLEAPRG-ITLLAGPTGGGKSTILRVAAGLA-------TRIYGGYLRGEVEA---R 68 Query: 80 QRTGVVQQENNLDD-ELNVVQNLKIFARFYRMKPSRARTRIEELLEFMELSEKRDQPVKA 138 + +V Q+ +L L + L+ + P AR L E + + + D+ V Sbjct: 69 GKPVLVPQDYDLFILSLTPREELEYCYEASGLPPWEARREAVRLAEELGIEDLLDRRVSK 128 Query: 139 LSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRALTRQGVTVLLTTHYM 198 LS G ++R+ IA AL E+L +DEP DP + + +R L +GV V H + Sbjct: 129 LSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVESLIRLLRRLDVEGVVV--AEHRV 186 Query: 199 EEAYHIADRIIIMDHGTSLLEGNPRELVE 227 A + ++ G + G P E VE Sbjct: 187 HYLLPAASSVYLVYDGRAKQLG-PGEAVE 214 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 49.3 bits (116), Expect = 1e-07 Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 27/218 (12%) Query: 20 LTDLSFSAGRGECVALLGPNGAGKTTMIKILYGKARRDPHPETRVEVFGLDPEVDELAIK 79 L D++ + G A++G +GAGKTT+++++ GKA G+ E + Sbjct: 456 LKDVNITVNPGSVAAVVGASGAGKTTLLRMILGKA------------LGIGGE----GYR 499 Query: 80 QRTGVVQQENN------LDDELNVVQNLKIFARFYRMKPSRARTRIEELLEFMELSEKR- 132 +GVV+ N L EL + K +E +L + L + Sbjct: 500 PDSGVVKIPTNTKAAALLPGELEPSFGGETLLEHVASKLGDPGAAVE-VLSSVGLGDAIF 558 Query: 133 -DQPVKALSGGMKRRLVIARALLNQPELLFLDEPTTGLDPQVRQLIWDRIRALTR-QGVT 190 LS G K R +A L +P LL +DE LDP + I ++ L R +G+T Sbjct: 559 FRASFGELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLTARRIARKLGKLARSKGIT 618 Query: 191 VLLTTHYMEEAYHI-ADRIIIMDHGTSLLEGNPRELVE 227 ++++T+ E + D +I++ +G++ E R L E Sbjct: 619 LIVSTNRPEILDALQPDTVILVGYGSAFQEEPGRVLRE 656 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 308,645 Number of Sequences: 1700 Number of extensions: 14007 Number of successful extensions: 176 Number of sequences better than 1.0e-04: 40 Number of HSP's better than 0.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 50 length of query: 304 length of database: 492,079 effective HSP length: 76 effective length of query: 228 effective length of database: 362,879 effective search space: 82736412 effective search space used: 82736412 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719710|ref|YP_003875242.1| ABC-type Nod factor export system, permease [Spirochaeta thermophila DSM 6192] (262 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602155|ref|NP_148703.1| ABC transporter permease [Aeropyrum... 45 1e-06 gi|14602112|ref|NP_148660.1| ABC transporter permease [Aeropyrum... 41 3e-05 >gi|14602155|ref|NP_148703.1| ABC transporter permease [Aeropyrum pernix K1] Length = 283 Score = 45.4 bits (106), Expect = 1e-06 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 7/106 (6%) Query: 148 IIAPLVGFLTASMFATIAFIITSIVDNLEQXXXXXXXXXXXXXXLSGVVFPIEQLPSWLK 207 ++ L+ +S+F +AF IT + E S +FPI+ +P+WLK Sbjct: 172 LVLMLMSLGLSSLFTGMAFNIT----HQEVLFALANLINLPLMFSSSALFPIDLMPNWLK 227 Query: 208 PVAEVFPLTHPVRLLRTYSMGDMGLTQLWDLVYCVAL---IAAAGW 250 VA+V P+TH L+R Y +G + + Y L + AAG+ Sbjct: 228 TVAQVNPITHAADLVRYYLVGKPLEDPVMSIAYLAVLTLFLLAAGY 273 >gi|14602112|ref|NP_148660.1| ABC transporter permease [Aeropyrum pernix K1] Length = 268 Score = 41.2 bits (95), Expect = 3e-05 Identities = 24/85 (28%), Positives = 44/85 (51%) Query: 164 IAFIITSIVDNLEQXXXXXXXXXXXXXXLSGVVFPIEQLPSWLKPVAEVFPLTHPVRLLR 223 + ++ I+ NL++ LSG++FP+E LPS L AE+ PLT + +R Sbjct: 159 MGLLLGGIIVNLKEPHAFNVMLTPFLMLLSGMMFPVEVLPSPLDTAAELIPLTLTLEAVR 218 Query: 224 TYSMGDMGLTQLWDLVYCVALIAAA 248 + + G++ + L+ +A+ A A Sbjct: 219 SLLLKGGGISSVEGLLIKLAIEAVA 243 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.143 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 220,824 Number of Sequences: 1700 Number of extensions: 7710 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 2 length of query: 262 length of database: 492,079 effective HSP length: 75 effective length of query: 187 effective length of database: 364,579 effective search space: 68176273 effective search space used: 68176273 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719711|ref|YP_003875243.1| hypothetical protein STHERM_c20350 [Spirochaeta thermophila DSM 6192] (234 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.142 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 224,949 Number of Sequences: 1700 Number of extensions: 9469 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 234 length of database: 492,079 effective HSP length: 74 effective length of query: 160 effective length of database: 366,279 effective search space: 58604640 effective search space used: 58604640 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719712|ref|YP_003875244.1| protein PASTA domain-containing protein [Spirochaeta thermophila DSM 6192] (309 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.139 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 335,978 Number of Sequences: 1700 Number of extensions: 15368 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 309 length of database: 492,079 effective HSP length: 77 effective length of query: 232 effective length of database: 361,179 effective search space: 83793528 effective search space used: 83793528 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719713|ref|YP_003875245.1| methionyl-tRNA formyltransferase [Spirochaeta thermophila DSM 6192] (299 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 325,211 Number of Sequences: 1700 Number of extensions: 15377 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 0 length of query: 299 length of database: 492,079 effective HSP length: 76 effective length of query: 223 effective length of database: 362,879 effective search space: 80922017 effective search space used: 80922017 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719714|ref|YP_003875246.1| peptide deformylase [Spirochaeta thermophila DSM 6192] (163 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 168,832 Number of Sequences: 1700 Number of extensions: 7261 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 163 length of database: 492,079 effective HSP length: 70 effective length of query: 93 effective length of database: 373,079 effective search space: 34696347 effective search space used: 34696347 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719715|ref|YP_003875247.1| hypothetical protein STHERM_c20400 [Spirochaeta thermophila DSM 6192] (239 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.134 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 238,604 Number of Sequences: 1700 Number of extensions: 9817 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 239 length of database: 492,079 effective HSP length: 74 effective length of query: 165 effective length of database: 366,279 effective search space: 60436035 effective search space used: 60436035 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719716|ref|YP_003875248.1| transporter [Spirochaeta thermophila DSM 6192] (330 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 342,591 Number of Sequences: 1700 Number of extensions: 15004 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 0 length of query: 330 length of database: 492,079 effective HSP length: 77 effective length of query: 253 effective length of database: 361,179 effective search space: 91378287 effective search space used: 91378287 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719717|ref|YP_003875249.1| transporter [Spirochaeta thermophila DSM 6192] (630 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.144 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 520,484 Number of Sequences: 1700 Number of extensions: 19997 Number of successful extensions: 63 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63 Number of HSP's gapped (non-prelim): 0 length of query: 630 length of database: 492,079 effective HSP length: 82 effective length of query: 548 effective length of database: 352,679 effective search space: 193268092 effective search space used: 193268092 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719718|ref|YP_003875250.1| follicular variant translocation protein 1 precursor [Spirochaeta thermophila DSM 6192] (272 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum... 84 3e-18 gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] 60 5e-11 >gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum pernix K1] Length = 250 Score = 84.3 bits (207), Expect = 3e-18 Identities = 61/191 (31%), Positives = 90/191 (47%), Gaps = 3/191 (1%) Query: 5 ENRWVYITGGSSGIGKACACLFAGEGAHIVLIARNQERLARAQEEVAAACRTSNQEVLTL 64 E + +TGGS GIG+A FA EG +V+ +++ LA E A R + E T+ Sbjct: 2 ETTYALVTGGSRGIGRATVLRFAREGWSVVIAYKSRADLAEKTAEEAR--RLGSPEAYTV 59 Query: 65 PLDVSQGARIRETLGEWMREHPGPDVLITSAGVAYPNYFERIPDEWFERTIDTNLKGTWY 124 +DV + E P +VL+ +AGV E +E T+ NL G + Sbjct: 60 RVDVGDPDSVTEMSSRVGELIPHLNVLVNAAGVLQLGGIEETSISEWEETLRVNLTGVYL 119 Query: 125 TVHSLYPAMKQRGSGYIVMVSSMAGYIG-VFGYTAYSASKFGIIGFASCLRSEAELHGIT 183 L P +++ IV V+S+AG G V AYSASK G+IG L + +GI Sbjct: 120 VTKLLLPLLRKAKWASIVNVASIAGETGNVVAGVAYSASKAGVIGLTKRLAVQLAGYGIR 179 Query: 184 VSVLCPPDTDT 194 V+ + P +T Sbjct: 180 VNAVAPSFVET 190 >gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] Length = 260 Score = 60.5 bits (145), Expect = 5e-11 Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 3/185 (1%) Query: 5 ENRWVYITGGSSGIGKACACLFAGEGAHIVLIARNQERLARAQEEVAAACRTSNQEVLTL 64 + + +T GSSG+G A A A GA ++L +RN+E+L A +A+ S +V + Sbjct: 6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASL--VSGAQVDIV 63 Query: 65 PLDVSQGARIRETLGEWMREHPGPDVLITSAGVAYPNYFERIPDEWFERTIDTNLKGTWY 124 D+ + I + L E R+ G D+L+ S G P F + E ++ + + + Sbjct: 64 AGDIREPGDI-DRLFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVW 122 Query: 125 TVHSLYPAMKQRGSGYIVMVSSMAGYIGVFGYTAYSASKFGIIGFASCLRSEAELHGITV 184 M ++G G +V + S+ + + +IG L E HG+TV Sbjct: 123 VGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHGVTV 182 Query: 185 SVLCP 189 + + P Sbjct: 183 NAVLP 187 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.136 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 270,888 Number of Sequences: 1700 Number of extensions: 11209 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 2 length of query: 272 length of database: 492,079 effective HSP length: 75 effective length of query: 197 effective length of database: 364,579 effective search space: 71822063 effective search space used: 71822063 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719719|ref|YP_003875251.1| 8-amino-7-oxononanoate synthase [Spirochaeta thermophila DSM 6192] (404 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 401,909 Number of Sequences: 1700 Number of extensions: 17711 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 0 length of query: 404 length of database: 492,079 effective HSP length: 79 effective length of query: 325 effective length of database: 357,779 effective search space: 116278175 effective search space used: 116278175 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719720|ref|YP_003875252.1| chorismate mutase [Spirochaeta thermophila DSM 6192] (254 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 260,184 Number of Sequences: 1700 Number of extensions: 11621 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 254 length of database: 492,079 effective HSP length: 75 effective length of query: 179 effective length of database: 364,579 effective search space: 65259641 effective search space used: 65259641 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719721|ref|YP_003875253.1| nudix hydrolase 3 [Spirochaeta thermophila DSM 6192] (174 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 182,763 Number of Sequences: 1700 Number of extensions: 6987 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 174 length of database: 492,079 effective HSP length: 71 effective length of query: 103 effective length of database: 371,379 effective search space: 38252037 effective search space used: 38252037 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719722|ref|YP_003875254.1| hypothetical protein STHERM_c20470 [Spirochaeta thermophila DSM 6192] (678 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 618,507 Number of Sequences: 1700 Number of extensions: 27006 Number of successful extensions: 121 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 121 Number of HSP's gapped (non-prelim): 0 length of query: 678 length of database: 492,079 effective HSP length: 83 effective length of query: 595 effective length of database: 350,979 effective search space: 208832505 effective search space used: 208832505 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719723|ref|YP_003875255.1| hypothetical protein STHERM_c20480 [Spirochaeta thermophila DSM 6192] (254 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 272,713 Number of Sequences: 1700 Number of extensions: 12654 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 254 length of database: 492,079 effective HSP length: 75 effective length of query: 179 effective length of database: 364,579 effective search space: 65259641 effective search space used: 65259641 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719724|ref|YP_003875256.1| hypothetical protein STHERM_c20490 [Spirochaeta thermophila DSM 6192] (408 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601780|ref|NP_148321.1| GTP-binding protein HflX [Aeropyrum... 115 3e-27 gi|14601219|ref|NP_147752.1| translation-associated GTPase [Aero... 45 3e-06 >gi|14601780|ref|NP_148321.1| GTP-binding protein HflX [Aeropyrum pernix K1] Length = 372 Score = 115 bits (287), Expect = 3e-27 Identities = 89/312 (28%), Positives = 144/312 (46%), Gaps = 20/312 (6%) Query: 60 GQAEVVAREARMRGIELVVFDEDLTPAQQRNWEHLVKSRVMDRTEVIIEIFSRHARTKQA 119 G + + EAR G E +++ DL P+ + V+DR +I+EIF+ HA +++A Sbjct: 48 GLLDAIKDEARSSGAEALIYYGDLQPSSKFTVMRETGLNVVDRVMLILEIFALHASSREA 107 Query: 120 QLQTEKARLEYLLPRLRG--AWSHLDXXXXXXXXXXXXXXXXIELDRRMILSXXXXXXXX 177 LQ E AR+++ +P R S + + RR ++ Sbjct: 108 LLQIEAARIKHEIPLAREFVRRSKMGEYPGFLGPGMYAADQYLRHLRRRLVKIRRELDKM 167 Query: 178 XXXXXXHQTTTRSRRLEAGIPRVSLVGYTNAGKSSLFTRLTGQAVRIQDRPFVTLDTTTR 237 + + S R ++G+ +VS+VGY +AGK+SLF LTG+ + F TL Sbjct: 168 RST----RESRLSSRAKSGLKQVSIVGYASAGKTSLFNLLTGEDRPVGPEYFTTLQPKHS 223 Query: 238 TCLIPGWGRVVVSDTVGFIQHLPHTLVDAFHATLEEVRDAHLLLEVVDLSSP--NLLLHL 295 G V+ +DTVGFI+ +P +V+AFHATL EV+ + ++ V+D + P ++ L Sbjct: 224 RITWGGVEGVLAADTVGFIRDVPPEIVEAFHATLAEVKHSDAIVFVIDAAEPPSDIEEKL 283 Query: 296 STTEEVLTEIGAHHIPRIRVYNKADRXXXXXXXXXXXXXE------------ILVSAKTG 343 + L IGA P + NK D E I +SAKTG Sbjct: 284 HAGIDTLARIGALSAPMVIAANKIDALQPPEIGERIALIEREASILPHSPPVIPISAKTG 343 Query: 344 EGIEGLLSLIVR 355 G++ L+ I++ Sbjct: 344 YGVDRLVRSIIK 355 >gi|14601219|ref|NP_147752.1| translation-associated GTPase [Aeropyrum pernix K1] Length = 410 Score = 45.1 bits (105), Expect = 3e-06 Identities = 39/121 (32%), Positives = 53/121 (43%), Gaps = 29/121 (23%) Query: 193 LEAGIPRVSLVGYTNAGKSSLFTRLTGQAVRIQDRPFVTLDTT----------------- 235 +EAG + LVG TN GKS+ F T V+I++RPFVT++ Sbjct: 1 MEAGSIVLGLVGKTNVGKSTFFAAATEVPVKIENRPFVTIEPNVGVGYARKRCAHVELGL 60 Query: 236 -----TRTCLIPGWGRVVVS--DTVGFI--QHLPHTLVDAFHATLEEVRDAHLLLEVVDL 286 + I GW + V D G + H L + F L++VR A LL VVD Sbjct: 61 PRCDPVNSLCIEGWRFIPVKLLDVAGLVPGAHRGRGLGNRF---LDDVRKADALLLVVDA 117 Query: 287 S 287 S Sbjct: 118 S 118 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 337,305 Number of Sequences: 1700 Number of extensions: 12716 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 3 length of query: 408 length of database: 492,079 effective HSP length: 79 effective length of query: 329 effective length of database: 357,779 effective search space: 117709291 effective search space used: 117709291 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719725|ref|YP_003875257.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Spirochaeta thermophila DSM 6192] (352 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.138 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 358,209 Number of Sequences: 1700 Number of extensions: 15601 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 352 length of database: 492,079 effective HSP length: 78 effective length of query: 274 effective length of database: 359,479 effective search space: 98497246 effective search space used: 98497246 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719726|ref|YP_003875258.1| L-ribulose-5-phosphate 4-epimerase [Spirochaeta thermophila DSM 6192] (234 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431546|ref|NP_148080.2| aldolase class II protein [Aeropyr... 53 8e-09 >gi|118431546|ref|NP_148080.2| aldolase class II protein [Aeropyrum pernix K1] Length = 199 Score = 52.8 bits (125), Expect = 8e-09 Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 15/193 (7%) Query: 10 EVWKANLLLSEHKLALFTWGNVSGYDPDAGVVAIKPSGVPYDALTPEDIVVVSLEGEKVW 69 +V +A L E L GNVS G+V + P+ V L+ D+ V+ L+G V Sbjct: 16 DVAEALKTLYERGLVQAMGGNVSALHN--GLVYLSPTRVFRGRLSWMDVAVMRLDGSVVR 73 Query: 70 GSLKPSSDTPTHLVLYREFPGLRGVTHTHAPFSVSWAQAGEDVPLYGTTHADHCVGPVPC 129 G +PSS+ H+ +YR G+ V H H P + G + A+ VG V Sbjct: 74 G--RPSSEWRMHIAIYRRLDGIAAVVHAHPPALLGADSTGLRLNPSLLMEAEATVGCVAG 131 Query: 130 TPYLSEGEVQEAYEEETGRLIVRTFKARGVQPLHTPMVLVAGHGPFTWGSSPEESVRHAV 189 P + G E + +A G + ++ HG G S E++ A Sbjct: 132 VPRVKPG------TWELAEAVATALEASGCR-----AAVLRNHGVVAVGRSLWEALDMAE 180 Query: 190 ILEEICKMALWTR 202 +E++ +++L+ R Sbjct: 181 AVEDLARISLYQR 193 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.134 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 287,512 Number of Sequences: 1700 Number of extensions: 13764 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 1 length of query: 234 length of database: 492,079 effective HSP length: 74 effective length of query: 160 effective length of database: 366,279 effective search space: 58604640 effective search space used: 58604640 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719727|ref|YP_003875259.1| L-arabinose isomerase [Spirochaeta thermophila DSM 6192] (501 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 567,603 Number of Sequences: 1700 Number of extensions: 27457 Number of successful extensions: 72 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72 Number of HSP's gapped (non-prelim): 0 length of query: 501 length of database: 492,079 effective HSP length: 81 effective length of query: 420 effective length of database: 354,379 effective search space: 148839180 effective search space used: 148839180 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719728|ref|YP_003875260.1| ribulokinase [Spirochaeta thermophila DSM 6192] (564 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 595,610 Number of Sequences: 1700 Number of extensions: 27802 Number of successful extensions: 75 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75 Number of HSP's gapped (non-prelim): 0 length of query: 564 length of database: 492,079 effective HSP length: 82 effective length of query: 482 effective length of database: 352,679 effective search space: 169991278 effective search space used: 169991278 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719729|ref|YP_003875261.1| ribose import ATP-binding protein RbsA [Spirochaeta thermophila DSM 6192] (504 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 281 3e-77 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 213 7e-57 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 137 6e-34 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 123 9e-30 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 120 1e-28 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 116 1e-27 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 116 1e-27 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 113 9e-27 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 108 4e-25 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 107 5e-25 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 107 9e-25 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 104 4e-24 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 103 1e-23 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 101 5e-23 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 99 2e-22 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 99 2e-22 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 98 5e-22 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 95 5e-21 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 95 5e-21 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 90 1e-19 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 90 1e-19 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 89 2e-19 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 89 2e-19 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 86 2e-18 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 86 2e-18 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 84 6e-18 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 83 2e-17 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 82 2e-17 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 81 5e-17 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 78 6e-16 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 76 2e-15 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 73 1e-14 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 73 2e-14 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 71 5e-14 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 71 5e-14 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 69 3e-13 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 68 6e-13 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 67 1e-12 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 61 6e-11 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 281 bits (718), Expect = 3e-77 Identities = 188/486 (38%), Positives = 270/486 (55%), Gaps = 26/486 (5%) Query: 6 VSLRGIKKSFP-GVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILW 64 V++RGI K +P GV+AL VD + GEV LLGENGAGK+TLM+IL G P GEI Sbjct: 13 VAMRGIVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYV 72 Query: 65 EGRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDYRKMREEARG 124 GR V ++ +DA R GI++++Q+F L + +V +N+ + L L + R Sbjct: 73 WGRKVSWRGPWDAIRNGIAMVYQQFRLVESMTVEENIAI---YLSSLGLGRSEARRRTLE 129 Query: 125 IFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLFQVI 184 L ++I L + V +L + +Q VEI KAL +VLI+DEPTS LT E KLF + Sbjct: 130 TAERLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTL 189 Query: 185 RDLKEQGISVIFISHKLEEVLAITDRVVVLRDG------ERVGETPTREATEESLVRLMV 238 R LK+ G+SV++I+HKL EV+ + DRV VLR G E VG T +EE L RLMV Sbjct: 190 RLLKDMGVSVVYITHKLGEVVRVADRVTVLRRGRVSAVIEDVGRT-----SEEELARLMV 244 Query: 239 GRELSDFFSHRRKKPQXXXXXXXXGLS----GPPYIEDVGFTLRRGEILGVAGLIGAGRT 294 G + R G+S G + +V +R GEI+G+AG+ G G+ Sbjct: 245 GTLPPP--TPRPPGKVGRELLSVRGVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQE 302 Query: 295 ETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSRGLVYLSEDRKNKSLILEMSVRENMS 354 E +IG RP G+I + G R+E D G Y++ DR K L ++ SV EN++ Sbjct: 303 ELVDAIIGLRRPVRGSIEVQGRRIE--GSLDFYRAGGGYIAGDR-GKVLAMDYSVAENIA 359 Query: 355 ISVLDRLSEFLHVINRKKEDELCRRYIDLLQVKTSGPSQRVKNLSGGNQQKVVIARCLAA 414 L + R + ++L RR ++ ++ P V LSGGNQQKV++ + Sbjct: 360 FLYYTASKTLL--LRRSRLEDLFRRLVERFRLVARSPWTPVGRLSGGNQQKVIVGSEVLR 417 Query: 415 EPLILILDEPTRGIDVNAKAEVHRIITELADNGVSIMLISSELPEILALSDRVLVMHEGR 474 +L+ PT+G+D+ + V +++ELA G I+L+S++L EIL LSDR+ VM GR Sbjct: 418 GFKLLVAVNPTQGLDIATTSFVRNLLSELARQGAGILLVSTDLDEILELSDRIYVMSGGR 477 Query: 475 VRGVLE 480 V GVLE Sbjct: 478 VTGVLE 483 Score = 105 bits (261), Expect = 3e-24 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 10/225 (4%) Query: 266 GPPYIEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPAD 325 G +++V FTLR GE+ + G GAG+T +L G ++PT G I + G +V P D Sbjct: 25 GVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYVWGRKVSWRGPWD 84 Query: 326 AVSRGLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDLLQ 385 A+ G+ + + + L+ M+V EN++I L L R+ + R +++ Sbjct: 85 AIRNGIAMVYQQFR---LVESMTVEENIAI-YLSSLGLGRSEARRRTLETAERLGLEIDL 140 Query: 386 VKTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITELAD 445 KT V +L G +Q+V I + L+ +LILDEPT + ++ + L D Sbjct: 141 AKT------VADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLRLLKD 194 Query: 446 NGVSIMLISSELPEILALSDRVLVMHEGRVRGVLENDGSLSQEDI 490 GVS++ I+ +L E++ ++DRV V+ GRV V+E+ G S+E++ Sbjct: 195 MGVSVVYITHKLGEVVRVADRVTVLRRGRVSAVIEDVGRTSEEEL 239 Score = 90.1 bits (222), Expect = 1e-19 Identities = 68/241 (28%), Positives = 116/241 (48%), Gaps = 6/241 (2%) Query: 1 MSRPVVSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEG 60 + R ++S+RG+ GV+ ++ V LE+ GE+VG+ G G G+ L+ + G+ P G Sbjct: 258 VGRELLSVRGVSVVVDGVERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRG 317 Query: 61 EILWEGRPVQFQSVFDAQRQGISIIFQEFN--LCPNTSVLDNL-FLGREVSRGLFLDYRK 117 I +GR ++ D R G I + L + SV +N+ FL S+ L L + Sbjct: 318 SIEVQGRRIE--GSLDFYRAGGGYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRRSR 375 Query: 118 MREEARGIFSYLDVDIPLD-RPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKE 176 + + R + + PVG LS QQ V + +L ++L+ PT L Sbjct: 376 LEDLFRRLVERFRLVARSPWTPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIAT 435 Query: 177 IAKLFQVIRDLKEQGISVIFISHKLEEVLAITDRVVVLRDGERVGETPTREATEESLVRL 236 + + ++ +L QG ++ +S L+E+L ++DR+ V+ G G +AT E L L Sbjct: 436 TSFVRNLLSELARQGAGILLVSTDLDEILELSDRIYVMSGGRVTGVLERSQATPEKLGVL 495 Query: 237 M 237 M Sbjct: 496 M 496 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 213 bits (543), Expect = 7e-57 Identities = 142/469 (30%), Positives = 245/469 (52%), Gaps = 19/469 (4%) Query: 17 GVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILWEGRPVQFQSVFD 76 GV ALKGV G V LLGENGAGK+TL+K + GV P +G IL +G ++ + D Sbjct: 17 GVHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPKGPGD 76 Query: 77 AQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDYRKMREEARGIFSYLDVDIPLD 136 + R GI + Q + P ++L + V+ G R+ R L ++I D Sbjct: 77 SLRSGIYMASQNPPVYPGIKAYEDLAVTLMVA-GRKAGLRQARTMLAEASEALGLNIDPD 135 Query: 137 RPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLFQVIRDLKEQGISVIF 196 R +GE+ + +Q +E+ KAL + R +++DEPT+ LT +E A++ + L G +V+ Sbjct: 136 RYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAASGAAVLL 195 Query: 197 ISHKLEEVLAITDRVVVLRDGERVGETPTREATEESLVRLMVGRELSDFFSHRRKKPQXX 256 ++H++ E + DR+V+LR G +V E P +TEE + +LM G L+ ++P+ Sbjct: 196 VTHRIGEAMEHADRLVILRKGVKVYEGPPPSSTEE-VAKLMFGEVLAP------REPKTF 248 Query: 257 XXXXXXG--------LSGPPYIEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTA 308 G +S PP + +R+GE++GVAG+ G G+ E +++G +P Sbjct: 249 TAATSTGRPVLSVDRVSLPPRLRMARLEVRQGEVVGVAGVAGNGQEELFEVIVGLRKPAK 308 Query: 309 GTIRLNGERVEIPSPADAVSRGLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVI 368 G I + G V P GL + E+R +L+ S+ N+++S+ F ++ Sbjct: 309 GRILIAGVDVTRAPPLARRRLGLGVIPEERLGHALVPGESIAFNIALSIHTARDGF--IV 366 Query: 369 NRKKEDELCRRYIDLLQVKTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGI 428 + + ++L I + +K P Q V LSGGN Q++V+AR L +P +L+ P G+ Sbjct: 367 DWRYYEKLAEEMIRDMGIKAVSPRQMVDELSGGNMQRLVLARELWLKPRLLVAMNPAAGL 426 Query: 429 DVNAKAEVHRIITELADNGVSIMLISSELPEILALSDRVLVMHEGRVRG 477 D+ + V ++ ++ G +++I +L +L +S+++ V G V+G Sbjct: 427 DLEGQQAVAEMMRMSSERG-GVLVIDEDLDFLLRVSNKIYVASGGIVKG 474 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 137 bits (345), Expect = 6e-34 Identities = 73/230 (31%), Positives = 128/230 (55%), Gaps = 3/230 (1%) Query: 5 VVSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILW 64 ++ +R + K F G++ALKGV + GE VGL+G NGAGK+TL I+SG+Y PD G +++ Sbjct: 4 ILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIY 63 Query: 65 EGRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDYRKMREEARG 124 +G + + R GI+ FQ N +VL+N+ +G + D R+ RE A Sbjct: 64 KGVDITGWPAYRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTN---DIREARERAME 120 Query: 125 IFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLFQVI 184 + + D +L++ ++ +E+A+AL + +L++DE + L +E+ L + Sbjct: 121 AIDMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTL 180 Query: 185 RDLKEQGISVIFISHKLEEVLAITDRVVVLRDGERVGETPTREATEESLV 234 ++ ++GI++I + H + V+ +RV+VL GE++ E RE LV Sbjct: 181 LEISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVASNKLV 230 Score = 62.0 bits (149), Expect = 3e-11 Identities = 46/204 (22%), Positives = 99/204 (48%), Gaps = 10/204 (4%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSR 329 ++ V F++RRGE +G+ G GAG+T ++ G P G + G + + A R Sbjct: 20 LKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYKGVDI---TGWPAYRR 76 Query: 330 GLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDLLQVKTS 389 ++ + + ++V N+ + L R ++ R E ID++ + Sbjct: 77 SRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAMEA------IDMVGL-AG 129 Query: 390 GPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITELADNGVS 449 K+L+ ++++ +AR LA +P +L+LDE G+ ++ + E++ G++ Sbjct: 130 KEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLEISKRGIT 189 Query: 450 IMLISSELPEILALSDRVLVMHEG 473 I+++ + ++ ++RV+V+H G Sbjct: 190 IIMVEHVMRAVMNFAERVIVLHFG 213 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 123 bits (309), Expect = 9e-30 Identities = 75/214 (35%), Positives = 123/214 (57%), Gaps = 7/214 (3%) Query: 6 VSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILWE 65 V L GI K F ALKG+DLEI GE V LLG +G GK+T ++I++G+ PD G + ++ Sbjct: 4 VRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFD 63 Query: 66 GRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDYRKMREEARGI 125 GR V + + + ++++FQ + L P+ V DN+ ++ + L ++ R Sbjct: 64 GRDV---TGLPPKDRNVAMVFQSYALWPHMRVFDNIAFPLKIKK---LPRDEIVRRVRWA 117 Query: 126 FSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLFQVIR 185 L++D LDR +LS QQ V +A+A++ + VL+MDEP S L K+ I+ Sbjct: 118 AELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIK 177 Query: 186 DLKEQ-GISVIFISHKLEEVLAITDRVVVLRDGE 218 L+ + G+++I+++H E + I DR+VV+ GE Sbjct: 178 KLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGE 211 Score = 73.6 bits (179), Expect = 1e-14 Identities = 56/213 (26%), Positives = 106/213 (49%), Gaps = 20/213 (9%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSR 329 ++ + ++ GE + + G G G+T T ++ G RP AG + +G V P D + Sbjct: 19 LKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFDGRDVTGLPPKDR-NV 77 Query: 330 GLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRY---IDLLQV 386 +V+ S +L M V +N++ + I + DE+ RR +LL++ Sbjct: 78 AMVFQSY-----ALWPHMRVFDNIAFPLK---------IKKLPRDEIVRRVRWAAELLEI 123 Query: 387 KTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITELADN 446 + LSGG QQ+V +AR + EP +L++DEP +D + ++ I +L Sbjct: 124 DHL-LDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKLQRR 182 Query: 447 -GVSIMLISSELPEILALSDRVLVMHEGRVRGV 478 GV+++ ++ + E + + DR++VM+ G ++ V Sbjct: 183 LGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQV 215 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 120 bits (300), Expect = 1e-28 Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 13/234 (5%) Query: 15 FPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILWEGRPVQFQSV 74 F GV AL V +E+ GE++G++G NGAGK++L+ +++GVY P G + ++GR + Sbjct: 11 FGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDITGLKP 70 Query: 75 FDAQRQGISIIFQEFNLCPNTSVLDNLFLG-REVSRGLFLDYR-----------KMREEA 122 G+S FQ L + +VL+N+ + +RG L+ + RE A Sbjct: 71 HQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWEVEARERA 130 Query: 123 RGIFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLFQ 182 + LD+ P+G L +Q+ V++A AL V++MDEP + L+++E + + Sbjct: 131 EHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEKEDIVR 190 Query: 183 VIRDLKE-QGISVIFISHKLEEVLAITDRVVVLRDGERVGETPTREATEESLVR 235 I + E +++ I H +E V + DRVVV+ G+ + E P EA + VR Sbjct: 191 AIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHEAVADERVR 244 Score = 80.9 bits (198), Expect = 7e-17 Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 14/220 (6%) Query: 266 GPPYIEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPAD 325 G +++V +RRGEILG+ G GAG+T ++ G +P G + G + P Sbjct: 13 GVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDITGLKPHQ 72 Query: 326 AVSRGLVYLSEDRKNKSLILEMSVRENMSI--------SVLDR-LSEFLHVINRKKEDEL 376 ++ G LS ++ L M+V EN+ + S+L++ L F + E Sbjct: 73 RITLG---LSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWEVEARER 129 Query: 377 CRRYIDLLQVKTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEV 436 IDLL + S + L G Q+KV +A LA P ++++DEP G+ K ++ Sbjct: 130 AEHVIDLLDLHEHRHSP-IGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEKEDI 188 Query: 437 HRIITELADN-GVSIMLISSELPEILALSDRVLVMHEGRV 475 R I E ++ +++LI ++ + + DRV+VM G+V Sbjct: 189 VRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKV 228 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 116 bits (291), Expect = 1e-27 Identities = 79/229 (34%), Positives = 128/229 (55%), Gaps = 16/229 (6%) Query: 6 VSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILWE 65 + L G+ K F V A+ VDL I GE LLG +G GK+T +++++G+ PDEG IL + Sbjct: 4 IRLEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILID 63 Query: 66 GRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSR---GLFLDYRKMREEA 122 G V F+ D + + ++++FQ + L P+ SV DN+ + R GL D +R Sbjct: 64 GEDVTFK---DPKDRNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKD--DIRRRV 118 Query: 123 RGIFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTE----KEIA 178 + L ++ LDR G+LS QQ V +A+AL+ + +V +MDEP S L A Sbjct: 119 IEVAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRA 178 Query: 179 KLFQVIRDLKEQGISVIFISHKLEEVLAITDRVVVLRDGERVGETPTRE 227 +L ++ +DLK I+ ++++H E +++ DR+ V+ G RV + T E Sbjct: 179 ELKKLQKDLK---ITTVYVTHDQAEAMSMADRIAVMNKG-RVVQVGTPE 223 Score = 80.5 bits (197), Expect = 9e-17 Identities = 56/209 (26%), Positives = 108/209 (51%), Gaps = 14/209 (6%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSR 329 ++ V +++ GE + G G G+T T L+ G P G I ++GE V P D + Sbjct: 19 VDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILIDGEDVTFKDPKDR-NV 77 Query: 330 GLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDLLQVKTS 389 +V+ +N +L MSV +N++ ++ R E +D++ RR I++ ++ Sbjct: 78 AMVF-----QNYALYPHMSVFDNIAFTLHLRRKEM-----GLTKDDIRRRVIEVAKLLRI 127 Query: 390 GP--SQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITEL-ADN 446 ++ LSGG QQ+V +AR L P + ++DEP +D + + + +L D Sbjct: 128 EDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELKKLQKDL 187 Query: 447 GVSIMLISSELPEILALSDRVLVMHEGRV 475 ++ + ++ + E ++++DR+ VM++GRV Sbjct: 188 KITTVYVTHDQAEAMSMADRIAVMNKGRV 216 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 116 bits (290), Expect = 1e-27 Identities = 74/243 (30%), Positives = 130/243 (53%), Gaps = 14/243 (5%) Query: 5 VVSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILW 64 ++ + ++K F G+ AL V+LEI G+V L+G NG+GK+TL+ ++SG Y PD G +L+ Sbjct: 6 ILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLF 65 Query: 65 EGRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGRE----------VSRGLFLD 114 +GR + S + + G+ FQ N +VL+N+ + ++R L+L Sbjct: 66 KGRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWLG 125 Query: 115 YRKMREEARG--IFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSAL 172 + K R AR I ++ +D DR GELS +++EIA+A++ ++IMDEP + + Sbjct: 126 FEK-RAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGV 184 Query: 173 TEKEIAKLFQVIRDL-KEQGISVIFISHKLEEVLAITDRVVVLRDGERVGETPTREATEE 231 + + + I+ L +E+GI+ + I H++ V DRV + G+ + E Sbjct: 185 NPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEVLNN 244 Query: 232 SLV 234 +V Sbjct: 245 PVV 247 Score = 56.2 bits (134), Expect = 2e-09 Identities = 53/237 (22%), Positives = 102/237 (43%), Gaps = 13/237 (5%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSR 329 ++ V + RG++ + G G+G+T ++ G +P G + G + SP + Sbjct: 22 LDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLFKGRDITGMSPHEISKL 81 Query: 330 GLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKK------EDELCRRYIDL 383 GLV + K ++V EN+ ++ D E +++ + E R ++ Sbjct: 82 GLVRTFQIPKP---FTNLTVLENV-LTAADSPGENVYLAGLARRLWLGFEKRAAARAFEI 137 Query: 384 LQVKTSGP--SQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIIT 441 L +R LSGG + + IAR + ++I+DEP G++ + I Sbjct: 138 LGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVNPRLAGSIMERIK 197 Query: 442 ELA-DNGVSIMLISSELPEILALSDRVLVMHEGRVRGVLENDGSLSQEDIMNTILRG 497 LA + G++ ++I + + DRV M G+V + D L+ ++ + L G Sbjct: 198 YLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEVLNNPVVLESYLGG 254 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 113 bits (283), Expect = 9e-27 Identities = 76/240 (31%), Positives = 126/240 (52%), Gaps = 12/240 (5%) Query: 6 VSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILWE 65 + L + K F AL V L I GE+ LLG +G GK+T +++++G PDEG + Sbjct: 4 IRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIG 63 Query: 66 GRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDYRKMREEARGI 125 R V ++ + +++FQ + L P+ V DN+ G ++ + L ++ R Sbjct: 64 SRDVTMLKPYE---RNTAMVFQNYALWPHMRVFDNIAYGLKLRK---LPRSEIVRRVRWA 117 Query: 126 FSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKL-FQVI 184 L++D LDR +LS QQ V +A+A++ + VL+MDEP S L K+ +++ Sbjct: 118 AELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIV 177 Query: 185 RDLKEQGISVIFISHKLEEVLAITDRVVVLRDG--ERVGETPTR--EATEESLVRLMVGR 240 R K G+++++++H EE L+I+ RV V+ G E+VG TP E V +GR Sbjct: 178 RLQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVG-TPMEVYEKPATYFVATFIGR 236 Score = 77.0 bits (188), Expect = 1e-15 Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 14/210 (6%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSR 329 ++ V + GEI + G G G+T T ++ G P G + + V + P + + Sbjct: 19 LDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIGSRDVTMLKPYER-NT 77 Query: 330 GLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDLLQVKTS 389 +V+ +N +L M V +N++ + R ++ R + +++ + Sbjct: 78 AMVF-----QNYALWPHMRVFDNIAYGLKLRKLPRSEIVRRVR---WAAELLEIDHLLDR 129 Query: 390 GPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITELADN-GV 448 P Q LSGG QQ+V +AR + EP +L++DEP +D + + ++ I L GV Sbjct: 130 YPHQ----LSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQKRLGV 185 Query: 449 SIMLISSELPEILALSDRVLVMHEGRVRGV 478 +I+ ++ + E L++S RV VM+ GRV V Sbjct: 186 TIVYVTHDQEEALSISHRVAVMNRGRVEQV 215 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 108 bits (269), Expect = 4e-25 Identities = 68/220 (30%), Positives = 120/220 (54%), Gaps = 9/220 (4%) Query: 6 VSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILWE 65 V L G+ K F V A++ V+L I E V +LG +G+GK+TL+ +++G+Y P G I + Sbjct: 4 VKLEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFN 63 Query: 66 GRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDYRKMREEARGI 125 V + ++ I ++FQ + L P+ +V +N+ + ++E+ + Sbjct: 64 DVDV---TDLPPNKRNIGLVFQNYALYPHMTVYENIAFPLRLRN---FGEPAIKEKVLSV 117 Query: 126 FSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLFQVIR 185 L ++ LDR +LS QQ V +A+AL+ + VL++DEP S L K+ ++ Sbjct: 118 AKLLGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELK 177 Query: 186 DL-KEQGISVIFISHKLEEVLAITDRVVVLRDG--ERVGE 222 L KE GI+ I+++H E LA+ DR+ ++ G ++VG+ Sbjct: 178 KLQKELGITAIYVTHDQSEALAMADRIAIIASGVIQQVGK 217 Score = 76.3 bits (186), Expect = 2e-15 Identities = 59/213 (27%), Positives = 109/213 (51%), Gaps = 20/213 (9%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSR 329 + DV + E + + G G+G+T L+ G +P+ G I N V P + + Sbjct: 19 VRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFNDVDVT-DLPPNKRNI 77 Query: 330 GLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDLLQVKTS 389 GLV+ +N +L M+V EN++ + RL F ++K + + + + + Sbjct: 78 GLVF-----QNYALYPHMTVYENIAFPL--RLRNFGEPAIKEKVLSVAK-LLGIEGLLDR 129 Query: 390 GPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGID----VNAKAEVHRIITELAD 445 P+Q LSGG QQ+V +AR L EP +L+LDEP +D + ++E+ ++ EL Sbjct: 130 YPAQ----LSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQKEL-- 183 Query: 446 NGVSIMLISSELPEILALSDRVLVMHEGRVRGV 478 G++ + ++ + E LA++DR+ ++ G ++ V Sbjct: 184 -GITAIYVTHDQSEALAMADRIAIIASGVIQQV 215 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 107 bits (268), Expect = 5e-25 Identities = 70/228 (30%), Positives = 117/228 (51%), Gaps = 4/228 (1%) Query: 1 MSRPVVSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEG 60 M+ P++ ++ I + QAL GV L ++ GE+V LLG NGAGK+T + +SG+ P G Sbjct: 2 MAEPLLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNG 61 Query: 61 EILWEGRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDYRKMRE 120 I+W+GR + F +GIS + + + P +V +NL + R ++ E Sbjct: 62 SIIWQGRDITGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRVAASTRRAK-EHFQDSLE 120 Query: 121 EARGIFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKL 180 + IF L + G LS QQM+ IA+AL+ + +L+MDEP+ L K + Sbjct: 121 QVYTIFPILKA--RRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDV 178 Query: 181 FQVIRDLKEQ-GISVIFISHKLEEVLAITDRVVVLRDGERVGETPTRE 227 + L+E+ G++++ + + L + DR V+ G V E + E Sbjct: 179 IYLASRLREELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDE 226 Score = 81.3 bits (199), Expect = 5e-17 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 13/205 (6%) Query: 274 GFTLR--RGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSRGL 331 G +LR +GEI+ + G GAG+T T L + G ++P G+I G + V G+ Sbjct: 24 GVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIWQGRDITGLPAFKRVEEGI 83 Query: 332 VYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDLLQVKTSGP 391 ++ E R + ++V EN+ ++ R ++ +D L + Y + + + Sbjct: 84 SHVPEGR---GIFPRLTVYENLRVAASTRRAK------EHFQDSLEQVYT-IFPILKARR 133 Query: 392 SQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITELADN-GVSI 450 SQ LSGG QQ + IAR L P++L++DEP+ G+ +V + + L + GV+I Sbjct: 134 SQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLASRLREELGVTI 193 Query: 451 MLISSELPEILALSDRVLVMHEGRV 475 +L+ + L ++DR VM GR+ Sbjct: 194 LLVEQNVGLSLKVADRGYVMETGRI 218 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 107 bits (266), Expect = 9e-25 Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 4/230 (1%) Query: 5 VVSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILW 64 ++ +RG+ S+ G + LKGVD+ + GE + ++G +G+GKSTL+K + + PD G I++ Sbjct: 4 LLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVF 63 Query: 65 EGRPVQFQSVFDAQ--RQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDYRKMREEA 122 G V S + R+ I + Q ++L P+ +VL N+ E + GL R E A Sbjct: 64 RGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGL--SRRDAEERA 121 Query: 123 RGIFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLFQ 182 S L ++ R LS QQ +A+AL M+ +L++DEPTSAL + A + + Sbjct: 122 VKYLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLE 181 Query: 183 VIRDLKEQGISVIFISHKLEEVLAITDRVVVLRDGERVGETPTREATEES 232 + + G ++I ++H+ + + + DR+ + DG E E E S Sbjct: 182 ALFRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSELVEGS 231 Score = 82.4 bits (202), Expect = 2e-17 Identities = 61/214 (28%), Positives = 110/214 (51%), Gaps = 11/214 (5%) Query: 265 SGPPYIEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPA 324 SG ++ V +L GE L + G G+G++ + V P +G+I G V S + Sbjct: 15 SGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVFRGVDVTRLSGS 74 Query: 325 DA--VSRGLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYID 382 V R + YL + + SL M+V N++ + L ++R+ +E +Y+ Sbjct: 75 QLRMVRRKIGYLPQ---SYSLFPHMTVLRNITYPLEKALG-----LSRRDAEERAVKYLS 126 Query: 383 LLQVKTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITE 442 +L ++ + LSGG QQ+ +AR LA EP IL+LDEPT +D ++A+V + Sbjct: 127 MLGIEDLAHRHPAR-LSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEALFR 185 Query: 443 LADNGVSIMLISSELPEILALSDRVLVMHEGRVR 476 +A G ++++++ E + ++DR+ M +G V+ Sbjct: 186 VATLGKAMIVVTHEADFAVKVADRMAFMEDGIVK 219 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 104 bits (260), Expect = 4e-24 Identities = 141/525 (26%), Positives = 221/525 (42%), Gaps = 83/525 (15%) Query: 17 GVQALKGVDLEI-HPGEVVGLLGENGAGKSTLMKILSGVYAPDEG----------EILWE 65 GV K L I G+VVGLLG NG GK+T ++IL+G P+ G EIL Sbjct: 91 GVNGFKLFRLPIPREGQVVGLLGRNGTGKTTALRILAGELKPNLGRVEGGEPEWDEILKR 150 Query: 66 GRPVQFQSVFDAQRQG---ISIIFQEFNLCPNT---SVLDNLFLGREVSRGLFLDYRKMR 119 R + Q+ F G ++ Q L P V D L R RG+ L+ + Sbjct: 151 FRGSELQTYFRKLVDGKLRVAHKIQYVELVPRRLKGRVRD--LLKRADERGVALELAEQ- 207 Query: 120 EEARGIFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAK 179 + +D DR V +LS Q + I L V I DEP+S L +E + Sbjct: 208 ---------VGLDKVFDRDVRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMR 258 Query: 180 LFQVIRDLKEQGISVIFISHKLEEVLAITDRVVVLRDGE--RVGETPTREATEESLVRLM 237 + ++I G V+ + H L + ++D V +L GE G +T E + + Sbjct: 259 MARLIAGAARPGAYVMVVEHDLAVLDYVSDLVHILY-GEPGAYGIVSKPYSTREGINVFL 317 Query: 238 VGRELSDFFSHRR-----KKP------------QXXXXXXXXGLSGPPYIEDVGFTLRRG 280 G ++ R+ +KP + G +G D GFTL G Sbjct: 318 QGYLPAENIRLRKEPILFRKPAPEAQPAAPGGGRQASRRRIVGWTGLRVALD-GFTLTSG 376 Query: 281 E-------ILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSRGLVY 333 E ++GVAG G G+T L GA++P G + E + VS Y Sbjct: 377 EGALYGGEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYVEDLR-------VSYKPQY 429 Query: 334 LSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDLLQVKTSGPSQ 393 +S + + + ++ N +I L ++ R + D+L R Sbjct: 430 ISPESLPDATVEQVLKAANPAILAPGSWLN-LELVKRMRLDKLLER-------------- 474 Query: 394 RVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITELAD-NGVSIML 452 RV+ LSGG QKV +A LA E + +LDEP+ +DV + V R I + + + ++ Sbjct: 475 RVRTLSGGELQKVAVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALV 534 Query: 453 ISSELPEILALSDRV-LVMHEGRVRGVLENDGSLSQEDIMNTILR 496 + +L + +SDR+ LV E VRG +++ + + MN +L+ Sbjct: 535 VEHDLMILDYVSDRIMLVTGEPGVRGHVDDPRPVKEG--MNLLLQ 577 Score = 56.2 bits (134), Expect = 2e-09 Identities = 50/215 (23%), Positives = 101/215 (46%), Gaps = 21/215 (9%) Query: 3 RPVVSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEI 62 R +V G++ + G G + ++ GEV+G+ G NG GK+T ++ L+G P EG + Sbjct: 356 RRIVGWTGLRVALDGFTLTSG-EGALYGGEVIGVAGPNGIGKTTFVRTLAGALKPVEGAV 414 Query: 63 --LWEGRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDYRKMRE 120 E V ++ + + ++ N ++L + G +L+ ++ Sbjct: 415 YPYVEDLRVSYKPQYISPESLPDATVEQVLKAANPAIL---------APGSWLNLELVKR 465 Query: 121 EARGIFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKL 180 + +D L+R V LS Q V +A AL + V ++DEP++ L +E + Sbjct: 466 --------MRLDKLLERRVRTLSGGELQKVAVAAALAREADVYLLDEPSAYLDVEERVGV 517 Query: 181 FQVIRDLKE-QGISVIFISHKLEEVLAITDRVVVL 214 + IR + E + + + + H L + ++DR++++ Sbjct: 518 ARAIRRIVETREAAALVVEHDLMILDYVSDRIMLV 552 Score = 52.8 bits (125), Expect = 2e-08 Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 14/225 (6%) Query: 278 RRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSRGLVYLSED 337 R G+++G+ G G G+T +L G ++P G R+ G E RG + Sbjct: 104 REGQVVGLLGRNGTGKTTALRILAGELKPNLG--RVEGGEPEWDEILKRF-RGSELQTYF 160 Query: 338 RKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDLLQVKTSGPSQ---- 393 RK +++ +R I ++ + L R R + L + G + Sbjct: 161 RK----LVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGVALELAEQVGLDKVFDR 216 Query: 394 RVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITELADNGVSIMLI 453 V+ LSGG QK++I L+ + + I DEP+ +D+ + + R+I A G +M++ Sbjct: 217 DVRQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAARPGAYVMVV 276 Query: 454 SSELPEILALSDRVLVMH-EGRVRGVLENDGSLSQEDIMNTILRG 497 +L + +SD V +++ E G++ S + +N L+G Sbjct: 277 EHDLAVLDYVSDLVHILYGEPGAYGIVSK--PYSTREGINVFLQG 319 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 103 bits (256), Expect = 1e-23 Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 5/226 (2%) Query: 2 SRPVVSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGE 61 S +V + K + G +A+ GV I GE+ LLG NGAGK+T +K+LS + P GE Sbjct: 3 SEAMVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGE 62 Query: 62 ILWEGRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDYRKMREE 121 G + + R+ I ++ Q+ S DN+++ +R L + RE Sbjct: 63 AWIAGYSIVREP--GNVRRVIGLVPQDLTADDEMSGWDNVYIQ---ARLYGLPSSEARER 117 Query: 122 ARGIFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLF 181 R + YLD+ R V S +++ +EIA +L+ +VL +DEPT L L+ Sbjct: 118 TREVLDYLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLW 177 Query: 182 QVIRDLKEQGISVIFISHKLEEVLAITDRVVVLRDGERVGETPTRE 227 + I DLK ++++ +H +EE ++DRV ++ G V E E Sbjct: 178 RYIEDLKRSAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEE 223 Score = 89.0 bits (219), Expect = 2e-19 Identities = 64/206 (31%), Positives = 107/206 (51%), Gaps = 12/206 (5%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSR 329 ++ V F + RGE+ + G GAG+T T +L +RPT+G + G + + P + V R Sbjct: 22 VDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGEAWIAGYSI-VREPGN-VRR 79 Query: 330 GLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDLLQVKTS 389 + + +D EMS +N+ I L+ + + E R +D L + + Sbjct: 80 VIGLVPQDLTADD---EMSGWDNVYIQAR------LYGLPSSEARERTREVLDYLDLMEA 130 Query: 390 GPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITELADNGVS 449 +RV SGG ++K+ IA L P +L LDEPT G+DV+++ + R I +L + V+ Sbjct: 131 A-HRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRYIEDLKRSAVT 189 Query: 450 IMLISSELPEILALSDRVLVMHEGRV 475 I+L + + E LSDRV ++ GR+ Sbjct: 190 ILLTTHYMEEAEMLSDRVAIIDRGRI 215 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 101 bits (251), Expect = 5e-23 Identities = 76/245 (31%), Positives = 118/245 (48%), Gaps = 19/245 (7%) Query: 5 VVSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILW 64 V+ + G+ K + V+AL+GV + GEV G LG NGAGK+T +++L G P G Sbjct: 4 VIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARV 63 Query: 65 EGRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDY--RKMREEA 122 G + +R+ + + EF F G VS G LDY R + + Sbjct: 64 FGVELYNPGASGVRRR-VGYVPGEFE-----------FYGG-VSGGRMLDYWCRLVGGCS 110 Query: 123 RGIFSYL--DVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKL 180 RG+ L +PL+R VG S ++QM+ + A + +++MDEPT+ L ++ Sbjct: 111 RGVVRELLEAFPLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRV 170 Query: 181 FQVIRDLKEQGISVIFISHKLEEVLAITDRVVVLRDGERVGETPTREATEES--LVRLMV 238 +R +G++V F SH L EV + DRV +LR G V +S +V+ V Sbjct: 171 LDFVRSKAREGVTVFFSSHVLSEVQRVADRVGLLRSGVLVALEDVSSLLRKSGKVVKARV 230 Query: 239 GRELS 243 + LS Sbjct: 231 SKNLS 235 Score = 68.9 bits (167), Expect = 3e-13 Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 23/219 (10%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSP-ADAVS 328 + V F++ GE+ G G GAG+T T +L+G RPT+G+ R+ G VE+ +P A V Sbjct: 20 LRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARVFG--VELYNPGASGVR 77 Query: 329 RGLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYI--DLLQV 386 R + Y+ + + +S L + ++ C R + +LL+ Sbjct: 78 RRVGYVPGEFEFYG-----------GVSGGRMLDYWCRLVGG------CSRGVVRELLEA 120 Query: 387 KTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITELADN 446 + V S G +Q + + + EP ++++DEPT G+D A+ V + A Sbjct: 121 FPLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDFVRSKARE 180 Query: 447 GVSIMLISSELPEILALSDRVLVMHEGRVRGVLENDGSL 485 GV++ S L E+ ++DRV ++ G V LE+ SL Sbjct: 181 GVTVFFSSHVLSEVQRVADRVGLLRSG-VLVALEDVSSL 218 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 99.4 bits (246), Expect = 2e-22 Identities = 68/237 (28%), Positives = 121/237 (51%), Gaps = 7/237 (2%) Query: 5 VVSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILW 64 ++ L + + +Q L V LEI G + ++G NGAGKSTL+K + G +G +L+ Sbjct: 5 IIKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLF 64 Query: 65 EGRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFL-GREVSRGLFLDYRKMREEAR 123 E V D + G++ IFQ N+ +V +NL L G ++ +F R EE Sbjct: 65 ENTDVTHMPPHDRAKIGMTFIFQLENIFRELTVYENLRLAGYDLPEDVF---RDRLEEVF 121 Query: 124 GIFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLFQV 183 +F L L + G LS +QM+ +A ++ K +V ++DEPT+ L+ K ++ Sbjct: 122 SMFPRLKE--RLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSY 179 Query: 184 IRDLKEQGISVIFISHKLEEVLAITDRVVVLRDGERVGETPTRE-ATEESLVRLMVG 239 +R L ++G +V+ + ++ L I D+ V++ +G + P E + L ++ +G Sbjct: 180 VRILNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDGPAEELLARKDLAKMYLG 236 Score = 62.0 bits (149), Expect = 3e-11 Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 27/212 (12%) Query: 272 DVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSRGL 331 DV + RG I + G GAG++ + G G + V P D G+ Sbjct: 23 DVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLFENTDVTHMPPHDRAKIGM 82 Query: 332 VYLSEDRKNKSLILEMSVRENMSIS--------VLDRLSEFLHVINRKKEDELCRRYIDL 383 ++ + +++ E++V EN+ ++ DRL E + R KE Sbjct: 83 TFIFQ---LENIFRELTVYENLRLAGYDLPEDVFRDRLEEVFSMFPRLKERL-------- 131 Query: 384 LQVKTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITEL 443 Q+ LSGG +Q + +A + +P + ++DEPT G+ EV + L Sbjct: 132 --------GQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVRIL 183 Query: 444 ADNGVSIMLISSELPEILALSDRVLVMHEGRV 475 G +++L+ + L + D+ +++ GR+ Sbjct: 184 NKEGYTVVLVEQNVKASLEIGDKGVLVVNGRI 215 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 99.0 bits (245), Expect = 2e-22 Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 21/224 (9%) Query: 5 VVSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILW 64 V+ RG+ K + G L VDLE+ GE VGL+G NGAGK+TL+K+ G+ D G +L Sbjct: 4 VLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLL 63 Query: 65 EGRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNL-----FLGREVSRGLFLDYRKMR 119 G + R+G+ ++F+ NL + V++ L +G SR +D+ Sbjct: 64 NGLDPWRE---PRAREGVGVVFERPNLPSSMPVVEFLESAAAIIGSSPSR---VDW---A 114 Query: 120 EEARGIFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAK 179 A G+ + P +LS L+Q IA ALL + R L+ DEPTS L E + Sbjct: 115 IRAAGLEGHEWKTFP------QLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERRE 168 Query: 180 LFQVIRDL-KEQGISVIFISHKLEEVLAITDRVVVLRDGERVGE 222 + +++ L +E G+S++ SH + E+L + R+ VL G E Sbjct: 169 VLRLLARLNREHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAE 212 Score = 65.5 bits (158), Expect = 3e-12 Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 20/212 (9%) Query: 266 GPPYIEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNG-ERVEIPSPA 324 G P ++ V + RGE +G+ G GAG+T + +G R G + LNG + P Sbjct: 16 GQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLLNGLDPWREPRAR 75 Query: 325 DAVSRGLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDLL 384 + V G+V+ + + ++E L+ + + + + + ++ Sbjct: 76 EGV--GVVFERPNLPSSMPVVEF----------LESAAAIIGSSPSRVDWAIRAAGLEGH 123 Query: 385 QVKTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITEL- 443 + KT LS G +Q+ IA L EP L+ DEPT +D + EV R++ L Sbjct: 124 EWKT------FPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLN 177 Query: 444 ADNGVSIMLISSELPEILALSDRVLVMHEGRV 475 ++G+S+++ S + E+L ++ R+ V+ GR+ Sbjct: 178 REHGLSLLVSSHVIVELLRVATRIYVLAGGRL 209 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 97.8 bits (242), Expect = 5e-22 Identities = 69/215 (32%), Positives = 121/215 (56%), Gaps = 15/215 (6%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRP----TAGTIRLNGERVEIPSPAD 325 ++ V FTLRRGE+LG+AG G+G++ A ++G V P G I ++G +++ S ++ Sbjct: 25 VDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDG--MDVTSMSE 82 Query: 326 AVSRGLVYLSEDRKNKSLILEMSVRENMSISVLDR-LSEFLHVINRKKEDELCRRYIDLL 384 A R V K S++ + ++ + + R + E L + E +R +LL Sbjct: 83 AELRRKVRW----KKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELL 138 Query: 385 Q---VKTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIIT 441 + + S + LSGG +Q+VVIA LA EP I+I DEPT +DV +A++ ++ Sbjct: 139 ESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLK 198 Query: 442 ELA-DNGVSIMLISSELPEILALSDRVLVMHEGRV 475 +LA + +SI+LI+ +L I L++ V++M+ G++ Sbjct: 199 KLAWEKNLSIILITHDLSVIAELAETVMIMYGGKI 233 Score = 81.6 bits (200), Expect = 4e-17 Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 26/227 (11%) Query: 7 SLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPD----EGEI 62 +LRGI V+A+ GV + GEV+G+ GE+G+GKSTL + G+ P G I Sbjct: 17 TLRGI------VKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRI 70 Query: 63 LWEGRPVQFQSVFDAQR----QGISIIFQEFNLCPNTSVLDNLF-LGREVSRGLFLDYRK 117 + +G V S + +R + +S++FQ +VL ++ +GR++ L + Sbjct: 71 MIDGMDVTSMSEAELRRKVRWKKVSMVFQ-----GAMNVLTPVYTVGRQIEEVLQIHRGV 125 Query: 118 MREEARGIFSYLDVDIPLDRPVG-----ELSVALQQMVEIAKALLMKVRVLIMDEPTSAL 172 R EAR L + L R + ELS +Q V IA AL ++ ++I DEPT+AL Sbjct: 126 GRHEARQRVYELLESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTAL 185 Query: 173 TEKEIAKLFQVIRDLK-EQGISVIFISHKLEEVLAITDRVVVLRDGE 218 A++ +++ L E+ +S+I I+H L + + + V+++ G+ Sbjct: 186 DVVVQAQILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGK 232 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 94.7 bits (234), Expect = 5e-21 Identities = 65/231 (28%), Positives = 117/231 (50%), Gaps = 5/231 (2%) Query: 6 VSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILWE 65 V L + S+ V+AL+GV + +LG +G GK+T++K+++G+ P G + + Sbjct: 6 VRLDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFG 65 Query: 66 GRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDYRKMREEARGI 125 G V + + +R+ + +FQ+ L P+ +V DN+ G + R+ E A Sbjct: 66 G--VDYTGL-PPERRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQVEWALET 122 Query: 126 FSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLFQVIR 185 + R V LS QQ V +A+A+ + VL++DEP S L K +L ++ Sbjct: 123 VGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELK 182 Query: 186 DLKEQ-GISVIFISHKLEEVLAITDRVVVLRDGERVGE-TPTREATEESLV 234 L+ + G ++I+++H E + + D +V++RDG V TP+ T + V Sbjct: 183 RLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEVYTRPANV 233 Score = 67.8 bits (164), Expect = 6e-13 Identities = 56/211 (26%), Positives = 104/211 (49%), Gaps = 19/211 (9%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPS-PADAVS 328 + V F+ I V G G G+T ++ G ++P G + G V+ P + S Sbjct: 21 LRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFGG--VDYTGLPPERRS 78 Query: 329 RGLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDLLQVKT 388 G V+ ++ +L M+V +N++ + R V +++ E + L + Sbjct: 79 VGFVF-----QDLALFPHMTVYDNVAFGLRARGFSGGEV---RRQVEWALETVGLTPPRE 130 Query: 389 SGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAK----AEVHRIITELA 444 +RV LSGG QQ+V +AR +A EP +L+LDEP +D + AE+ R+ +L Sbjct: 131 F-MGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQRKL- 188 Query: 445 DNGVSIMLISSELPEILALSDRVLVMHEGRV 475 G +++ ++ + E + L+D +++M +GR+ Sbjct: 189 --GSTMIYVTHDQWEAMELADTLVIMRDGRI 217 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 94.7 bits (234), Expect = 5e-21 Identities = 72/240 (30%), Positives = 119/240 (49%), Gaps = 35/240 (14%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLN---GERVEIPSPADA 326 ++ V +L++GEILGV G G+G+T A +IG RP G + ++ GE E S +A Sbjct: 30 VDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGELEEAVSIYEA 89 Query: 327 VSRGLVYLSEDRKNKSLILEM---------------------------SVRENMSISVLD 359 + RG ED K I++ S+ M + + Sbjct: 90 LKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSLNPRMKVGEII 149 Query: 360 RLSEFLHVINRKKEDELCRRYIDLLQVKTSGPSQRVK---NLSGGNQQKVVIARCLAAEP 416 +H I + E + RR I++L+ G + LSGG +Q+V IAR LA P Sbjct: 150 GEPVRVHGIEKSSEG-VKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVAIARALALNP 208 Query: 417 LILILDEPTRGIDVNAKAEVHRIITEL-ADNGVSIMLISSELPEILALSDRVLVMHEGRV 475 IL+LDEPT +DV+ +A++ R++ EL G++ +LI+ ++ + +S V+VM+ G++ Sbjct: 209 KILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSSVVVMYSGKI 268 Score = 79.7 bits (195), Expect = 2e-16 Identities = 63/261 (24%), Positives = 125/261 (47%), Gaps = 54/261 (20%) Query: 11 IKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILWE---GR 67 +KK V+A+ GV L + GE++G++GE+G+GK+TL K + G++ P G + + G Sbjct: 20 LKKVIGYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGE 79 Query: 68 PVQFQSVFDAQRQGISIIFQEFNLCPNT-SVLDNLFLGREVSRGLFLDYRKMREEARGI- 125 + S+++A ++G ++ ++ D ++ R +Y+K R + + + Sbjct: 80 LEEAVSIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRS-------NYKKFRRKVQMVQ 132 Query: 126 ---FSYLDVDIPLDRPVGE--------------------------------------LSV 144 +S L+ + + +GE LS Sbjct: 133 QDPYSSLNPRMKVGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSG 192 Query: 145 ALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLFQVIRDL-KEQGISVIFISHKLEE 203 +Q V IA+AL + ++L++DEPTSAL A++ +++R+L K+ G++ + I+H + Sbjct: 193 GQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISV 252 Query: 204 VLAITDRVVVLRDGERVGETP 224 V ++ VVV+ G+ + P Sbjct: 253 VRYMSSSVVVMYSGKIMESAP 273 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 90.1 bits (222), Expect = 1e-19 Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 8/225 (3%) Query: 18 VQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILWEGRPVQFQSVFDA 77 ++AL GVDL++ G + LLG NGAGK+TL+KILS + PD G G V ++ Sbjct: 26 IRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANNVR 85 Query: 78 QRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDYRKMREEARGIFSYLDVDIPLDR 137 R G+ ++ E L S DNL+ S+ + R+ + + + + ++ Sbjct: 86 SRIGV-VLGGERALYWRLSGWDNLWF---FSQLYGIPPREAKRRVKELLEIVGLEEWAHV 141 Query: 138 PVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLFQVIRDLKEQGISVIFI 197 V S ++Q + IA+ L+ VL++DEPT L K ++ +IR + +G +V+ Sbjct: 142 RVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVLLT 201 Query: 198 SHKLEEVLAITDRVVVLRDGERVGETPTREATE----ESLVRLMV 238 +H + E ++DRV ++ G V E P + ES++ L V Sbjct: 202 THYMVEAEELSDRVAIISKGRIVAEGPPEDLKSLVGGESVIELKV 246 Score = 72.8 bits (177), Expect = 2e-14 Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 15/208 (7%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSR 329 ++ V + RG + + G GAG+T +L + P +G R+ G V + + SR Sbjct: 29 LDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDV-VREANNVRSR 87 Query: 330 GLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDLLQVK-- 387 V L +R +L +S +N+ S+ + R+ + RR +LL++ Sbjct: 88 IGVVLGGER---ALYWRLSGWDNLWF-----FSQLYGIPPREAK----RRVKELLEIVGL 135 Query: 388 TSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITELADNG 447 RV+N S G +Q++ IAR L +P +L+LDEPT G+D A EV II + G Sbjct: 136 EEWAHVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREG 195 Query: 448 VSIMLISSELPEILALSDRVLVMHEGRV 475 +++L + + E LSDRV ++ +GR+ Sbjct: 196 RTVLLTTHYMVEAEELSDRVAIISKGRI 223 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 90.1 bits (222), Expect = 1e-19 Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 12/210 (5%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSR 329 + +V ++ RGE+L + G G+G+T ++ G RP AG + ++G V + Sbjct: 30 LREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGEELRRF 89 Query: 330 GLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDLLQVKTS 389 L + + +LI ++ EN+ + + NR + EL RR V Sbjct: 90 RLERVGYVFQQHNLIPTLTALENILLPMA-----LAGKANRLRGQELLRR------VGLG 138 Query: 390 GPSQRV-KNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITELADNGV 448 G +R + LSGG QQ++ +A LA +P I++ DEPT +D+ + RI+ E A + Sbjct: 139 GKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERIVRILLEEAHSRG 198 Query: 449 SIMLISSELPEILALSDRVLVMHEGRVRGV 478 +++++ P + ++DRV V+ +GR+RGV Sbjct: 199 KTVVLTTHDPRVARMADRVAVIEDGRLRGV 228 Score = 81.6 bits (200), Expect = 4e-17 Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 26/243 (10%) Query: 18 VQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILWEGRPVQFQSVFDA 77 + AL+ V L + GEV+ ++G +G+GK+TL+ I++GV P+ G ++ +G V + Sbjct: 27 IVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVIVDGFEVSSAGGEEL 86 Query: 78 QR---QGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDYRKMREEARGIFSYLDVDIP 134 +R + + +FQ+ NL P + L+N+ L + L + R + + + + Sbjct: 87 RRFRLERVGYVFQQHNLIPTLTALENILL------PMALAGKANRLRGQELLRRVGLGGK 140 Query: 135 LDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLFQVIRDLKEQ---- 190 R ELS QQ + +A AL +++ DEPT E +IA +++R L E+ Sbjct: 141 ERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTG---ELDIATGERIVRILLEEAHSR 197 Query: 191 GISVIFISHKLEEVLAITDRVVVLRDGER---------VGETPTREATEESLVRLMVGRE 241 G +V+ +H V + DRV V+ DG G T E E V ++ R Sbjct: 198 GKTVVLTTHD-PRVARMADRVAVIEDGRLRGVYSPSRIAGATGFGEVEAEKAVEAVMRRI 256 Query: 242 LSD 244 L D Sbjct: 257 LDD 259 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 89.0 bits (219), Expect = 2e-19 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 18/244 (7%) Query: 1 MSRPVVSLRGIKKSFPG-------VQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSG 53 M+ ++ RG+ K F V+ALKGV ++ GE+ LG NGAGK+T ++ILS Sbjct: 1 MAGAMIEARGLVKRFVSGRIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILST 60 Query: 54 VYAPDEGEILWEGRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGR--EVSRGL 111 + PD GE G V + +R G+ + + T + + GR + +G Sbjct: 61 LLDPDGGEARVAGFDVVKERWEVRKRIGVMLSVERGFYWKLTGRENLYYFGRIYGIPQG- 119 Query: 112 FLDYRKMREEARGIFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSA 171 + + +E + D+ D+P E+S+ ++ + +A+ LL VLI+DEPT Sbjct: 120 --ELKSRIKEVLDLVGLTDLG-GADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLG 176 Query: 172 LTEKEIAKLFQVIRDLKEQGISVIFISHKLEEVLAITDRVVVLRDGERVGETPTREATEE 231 L + VIR L +G ++ +H + E I+DRV ++ +G E T + Sbjct: 177 LDPASARTIRGVIRSLASEGRTIFITTHNMVEAEMISDRVGII-----IGGRIAMEGTPD 231 Query: 232 SLVR 235 L R Sbjct: 232 ELKR 235 Score = 67.4 bits (163), Expect = 8e-13 Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 17/210 (8%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSR 329 ++ V F++ GEI G GAG+T T +L + P G R+ G V + + R Sbjct: 28 LKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAGFDV-VKERWEVRKR 86 Query: 330 GLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDLLQV--- 386 V LS +R +++ REN+ + I + EL R ++L + Sbjct: 87 IGVMLSVER---GFYWKLTGRENLY---------YFGRIYGIPQGELKSRIKEVLDLVGL 134 Query: 387 -KTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITELAD 445 G + + +S G + ++ +AR L +P +LILDEPT G+D + + +I LA Sbjct: 135 TDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSLAS 194 Query: 446 NGVSIMLISSELPEILALSDRVLVMHEGRV 475 G +I + + + E +SDRV ++ GR+ Sbjct: 195 EGRTIFITTHNMVEAEMISDRVGIIIGGRI 224 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 89.0 bits (219), Expect = 2e-19 Identities = 61/232 (26%), Positives = 121/232 (52%), Gaps = 12/232 (5%) Query: 6 VSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVY-----APDEG 60 V + G+ LKG+ + PG V ++G +G+GKSTL+++++ + A EG Sbjct: 6 VRVSGLNVWITDKHILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEG 65 Query: 61 EILWEGRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDYRKMRE 120 E+ V + ++ +R ++FQE N P+ ++ +N+ +G ++ GL + +++ E Sbjct: 66 EVWINNMNVMKEDPYNIRRY-TGMVFQEPNPFPHMTIYENVAIGPKL-HGLAKNKKELDE 123 Query: 121 EARGIFSYL----DVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKE 176 +V L +LS +Q + +A+AL +K RVL++DEPT+ + Sbjct: 124 IVEWALKMAHLWDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVS 183 Query: 177 IAKLFQ-VIRDLKEQGISVIFISHKLEEVLAITDRVVVLRDGERVGETPTRE 227 K+ Q ++ KE+ +VI ++H ++ I+D+++ L +G + PT+E Sbjct: 184 TVKIEQSIVEYAKEEMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKE 235 Score = 62.8 bits (151), Expect = 2e-11 Identities = 57/219 (26%), Positives = 105/219 (47%), Gaps = 25/219 (11%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALL------LIGAVRPTAGTIRLNGERVEIPSP 323 ++ + F + G + + G G+G++ + LI R G + +N V P Sbjct: 21 LKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGAR-VEGEVWINNMNVMKEDP 79 Query: 324 ADAVS-RGLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVI--NRKKEDELCR-- 378 + G+V+ + + M++ EN++I LH + N+K+ DE+ Sbjct: 80 YNIRRYTGMVF-----QEPNPFPHMTIYENVAIGPK------LHGLAKNKKELDEIVEWA 128 Query: 379 -RYIDLLQVKTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVH 437 + L S LSGG +Q++ +AR LA +P +L+LDEPT ID + ++ Sbjct: 129 LKMAHLWDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIE 188 Query: 438 RIITELADNGVSIMLISSELPEILA-LSDRVLVMHEGRV 475 + I E A ++ ++I + P+ A +SD++L ++EGRV Sbjct: 189 QSIVEYAKEEMATVIIVTHTPQQAARISDQILFLYEGRV 227 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 86.3 bits (212), Expect = 2e-18 Identities = 69/245 (28%), Positives = 121/245 (49%), Gaps = 31/245 (12%) Query: 5 VVSLRGIKKSFPG---------------VQALKGVDLEIHPGEVVGLLGENGAGKSTLMK 49 +VS+RG+K +P V+A+ GVDL I GEV+ ++GE+G GK+TL K Sbjct: 7 IVSIRGLKVHYPVYYSLLKRILGRPDAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLGK 66 Query: 50 ILSGVYAPDEGEILWEGRPVQFQSVFDAQR--QGISIIFQEFNLCPNTSVLDNLFLGREV 107 + G+ P +G I + G + + +R + + ++FQ+ P S+ + +G +V Sbjct: 67 AIVGIEEPSDGAIYYRGELLTPHRLARDRRLRRKLQMVFQD----PYKSLDPLMPVGDQV 122 Query: 108 SRGLFLDYRKMREEARGIFSYLDVDIPLD-------RPVGELSVALQQMVEIAKALLMKV 160 + L + EEAR + + L R +LS +Q V IA+ L+++ Sbjct: 123 AEPLVIHGLARGEEARRRAVEMLETVGLTPGREFYWRKPHQLSGGQRQRVAIARTLVLEP 182 Query: 161 RVLIMDEPTSALTEKEIAKLFQVIRDL-KEQGISVIFISHKLEEVLAITDRVVVLRDGE- 218 V++ DEP S + A + +I D + G +++ I+H + A+ DR+ V+ G+ Sbjct: 183 EVIVADEPVSMIDVSMRASILDLIMDYHRRTGATIVLITHDIAVARAVADRIAVMYLGKI 242 Query: 219 -RVGE 222 VGE Sbjct: 243 VEVGE 247 Score = 84.7 bits (208), Expect = 5e-18 Identities = 62/228 (27%), Positives = 112/228 (49%), Gaps = 27/228 (11%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSR 329 ++ V +R GE+L + G G G+T ++G P+ G I GE + Sbjct: 38 VDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHR------- 90 Query: 330 GLVYLSEDRKNKSLILEMSVRENMSISVL----DRLSEFLHVINRKKEDELCRRYIDLLQ 385 L+ DR+ + + + S+ L D+++E L + + +E RR +++L+ Sbjct: 91 ----LARDRRLRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLE 146 Query: 386 VKTSGPSQ-----RVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRII 440 P + + LSGG +Q+V IAR L EP +++ DEP IDV+ +A + +I Sbjct: 147 TVGLTPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLI 206 Query: 441 TEL-ADNGVSIMLISSELPEILALSDRVLVMHEGRV------RGVLEN 481 + G +I+LI+ ++ A++DR+ VM+ G++ R V+EN Sbjct: 207 MDYHRRTGATIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVIEN 254 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 85.9 bits (211), Expect = 2e-18 Identities = 62/251 (24%), Positives = 123/251 (49%), Gaps = 23/251 (9%) Query: 4 PVVSLRGIKKSF-PGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPD---- 58 P++++ ++ + P + +K + L + G + L+G NGAGK+TL+K +SGV + Sbjct: 3 PLLNVSNVEIMYHPFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRV 62 Query: 59 -EGEILWEGRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDYRK 117 G I EG + + + R+G+ + + + + +NL + Sbjct: 63 TRGSIQLEGEDITNREPDEIARRGVIYVMEGRRIFKELTTEENLV-------SVAYAAGA 115 Query: 118 MREEARGIFSYLD-VDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKE 176 R++ R + SY + L G LS QQM+ IA ALL + ++L++DEP+ L K Sbjct: 116 SRDDIRSVLSYFPRLKERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKI 175 Query: 177 IAKLFQVIRDL-KEQGISVIFISHKLEEVLAITDRVVVLRDGERVGETPTREATEESLVR 235 ++++ I+ L +E+G++++ + L I+D V+ +G R E S Sbjct: 176 TSQIYATIKMLHREEGLTILLAEQNARKALEISDYGYVIENG--------RIVLEGSAEE 227 Query: 236 LMVGRELSDFF 246 L + +++++F+ Sbjct: 228 LRLDKDVAEFY 238 Score = 78.2 bits (191), Expect = 4e-16 Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 19/212 (8%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAV-----RPTAGTIRLNGERVEIPSPA 324 I+++ ++ +G I + G GAG+T + G + R T G+I+L GE + P Sbjct: 21 IKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNREPD 80 Query: 325 DAVSRGLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDLL 384 + RG++Y+ E R+ + E++ EN+ +SV + ++D R + Sbjct: 81 EIARRGVIYVMEGRR---IFKELTTEENL-VSVA-------YAAGASRDD--IRSVLSYF 127 Query: 385 QVKTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITEL- 443 ++ NLSGG QQ + IA L P +L+LDEP+ G+ ++++ I L Sbjct: 128 PRLKERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLH 187 Query: 444 ADNGVSIMLISSELPEILALSDRVLVMHEGRV 475 + G++I+L + L +SD V+ GR+ Sbjct: 188 REEGLTILLAEQNARKALEISDYGYVIENGRI 219 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 84.3 bits (207), Expect = 6e-18 Identities = 68/226 (30%), Positives = 104/226 (46%), Gaps = 13/226 (5%) Query: 6 VSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILWE 65 V RG++K F G A+ GV + GE ++G NG+GK+TL++++SGV P G + Sbjct: 5 VEARGLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSV--- 61 Query: 66 GRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGRE----VSRGLFLDYRKMREE 121 R + D R+ +I P + G E V L L R E Sbjct: 62 -RVCGYDVWGDGWREARGLI----GFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARRE 116 Query: 122 ARGIFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLF 181 AR + L + L R V LS ++ + IA AL V+++DEP S L + L+ Sbjct: 117 ARRVLEMLGFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLW 176 Query: 182 QVIRDLKEQGISVIFISHKLEEVLAITDRVVVLRDGERVGETPTRE 227 +R +G +V+F SH +E A +DRV+++ G RE Sbjct: 177 ASLRK-AFKGRTVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPRE 221 Score = 71.2 bits (173), Expect = 5e-14 Identities = 61/210 (29%), Positives = 109/210 (51%), Gaps = 12/210 (5%) Query: 266 GPPYIEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPAD 325 G + V F++ GE + G G+G+T ++ G +RP+ G++R+ G V + Sbjct: 16 GRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVCGYDVWGDGWRE 75 Query: 326 AVSRGLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDLLQ 385 A RGL+ + ++ + M+ E I+V+ L + R++ RR +++L Sbjct: 76 A--RGLIGFAP--QDPPMARRMTGAEY--ITVVGGLLGLSPGVARRE----ARRVLEMLG 125 Query: 386 VKTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITELAD 445 + + V LSGG ++ + IA LA+ P +++LDEP G+DV A+ + + + A Sbjct: 126 FEDV-LGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASLRK-AF 183 Query: 446 NGVSIMLISSELPEILALSDRVLVMHEGRV 475 G +++ S + E A SDRVL+MH GR+ Sbjct: 184 KGRTVLFSSHDPQEAEAESDRVLIMHRGRL 213 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 82.8 bits (203), Expect = 2e-17 Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 13/241 (5%) Query: 8 LRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILWEGR 67 L G+ KS G L+GV L + GE+ L G NGAGK+T +++L G+ + D GE G Sbjct: 17 LCGVAKSVKGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGV 76 Query: 68 PVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDN-LFLGREVSRGLFLDYRKMREEARGIF 126 + F+ + + + ++ ++ + ++N LF R L+ +R + E Sbjct: 77 D-PWGGGFERVKGEVGYLPEDASVYERLTGMENILFYAR-----LYSGWRDVEELVENAV 130 Query: 127 SYLDVDIP-LDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLFQVIR 185 Y + L R G S +++ + + L+ K R++++DEPTS + ++ +++R Sbjct: 131 FYSGLSREDLARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILR 190 Query: 186 DLKEQGISVIFISHKLEEVLAITDRVVVLRDGERVGETPTREATEESLVRLMVGRELSDF 245 L +G +++ +H L I DRV ++ G V P EE G L D Sbjct: 191 GLSREGRAILVTTHDLALAEEIADRVTIIHGGSTVASGPPYRLVEE-----YCGETLEDA 245 Query: 246 F 246 F Sbjct: 246 F 246 Score = 67.0 bits (162), Expect = 1e-12 Identities = 52/217 (23%), Positives = 103/217 (47%), Gaps = 25/217 (11%) Query: 264 LSGPPYIEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSP 323 + G P + V +++ GEI +AGL GAG+T + +L+G + +G R+ G Sbjct: 24 VKGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVD-PWGGG 82 Query: 324 ADAVSRGLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVI-------NRKKEDEL 376 + V + YL ED SV +RL+ +++ + +EL Sbjct: 83 FERVKGEVGYLPEDA-----------------SVYERLTGMENILFYARLYSGWRDVEEL 125 Query: 377 CRRYIDLLQVKTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEV 436 + + ++R S G ++++++ L ++P +++LDEPT G+D A + Sbjct: 126 VENAVFYSGLSREDLARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRI 185 Query: 437 HRIITELADNGVSIMLISSELPEILALSDRVLVMHEG 473 +I+ L+ G +I++ + +L ++DRV ++H G Sbjct: 186 KKILRGLSREGRAILVTTHDLALAEEIADRVTIIHGG 222 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 82.4 bits (202), Expect = 2e-17 Identities = 68/240 (28%), Positives = 128/240 (53%), Gaps = 24/240 (10%) Query: 1 MSRPVVSLRGIKKSFPG----VQALKGVDLEIHPGEVVGLLGENGAGKSTL----MKILS 52 MS V+S+R + ++ V AL GV+L+++ GE++ ++GE+G GKSTL +IL Sbjct: 1 MSEIVLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILP 60 Query: 53 GVYAPDEGEI---LWEGRPVQF-----QSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLG 104 ++G I L G V + + + +S+IFQ+ P+ ++ + Sbjct: 61 SNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQD----PSAALSPVHKVK 116 Query: 105 REVSRGLFLDYRKMREEARGIFSYLDVDIP---LDRPVGELSVALQQMVEIAKALLMKVR 161 ++V+ + + R++ + A+ I L + P L++ ELS ++Q + IA +L+ + R Sbjct: 117 KQVTDHVSGEKRRVEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPR 176 Query: 162 VLIMDEPTSALTEKEIAKLFQVIRDLKEQ-GISVIFISHKLEEVLAITDRVVVLRDGERV 220 ++I DEPT+AL A++ +++ L+E+ ++I I+H L I DR+ V+ G V Sbjct: 177 IIIADEPTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVV 236 Score = 68.2 bits (165), Expect = 5e-13 Identities = 60/216 (27%), Positives = 109/216 (50%), Gaps = 15/216 (6%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSR 329 ++ V + +GEIL + G G G++ T I + P+ I + + S Sbjct: 25 LDGVELDVYQGEILAIVGESGCGKS-TLARSIARILPSNAVIEKGSIILNLGSGNTV--- 80 Query: 330 GLVYLSEDR--KNKSLILEMSVRE-NMSISVLDRLSEFL--HVINRKKEDELCRRYIDLL 384 LV LSED K + I+ M ++ + ++S + ++ + + HV K+ E + I L Sbjct: 81 DLVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDHVSGEKRRVEKIAQEI-LK 139 Query: 385 QVKTSGPSQRVKN----LSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRII 440 ++ P ++ LSGG +Q++VIA L P I+I DEPT +DV +A++ +++ Sbjct: 140 KLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKML 199 Query: 441 TELADN-GVSIMLISSELPEILALSDRVLVMHEGRV 475 + L + +I+LI+ L ++DR+ VM+ G V Sbjct: 200 SRLREELETTIILITHNLAVAAEIADRIAVMYAGHV 235 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 81.3 bits (199), Expect = 5e-17 Identities = 59/214 (27%), Positives = 108/214 (50%), Gaps = 17/214 (7%) Query: 264 LSGPPYIEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSP 323 L G ++DV T+ RG + GV G GAG+T L+G R G + L GE VE Sbjct: 18 LGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALLGEPVE--RA 75 Query: 324 ADAVSRGLVYLSEDRKN-KSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYID 382 ++ R + YL ED + +++ +R SI ++ L +L +R Sbjct: 76 GGSLFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLEGYLEEASR------------ 123 Query: 383 LLQVKTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITE 442 L +RV++ S G ++++++A LA +P + +LDEPT G+D + R++ E Sbjct: 124 -LSGLGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKE 182 Query: 443 LAD-NGVSIMLISSELPEILALSDRVLVMHEGRV 475 ++ +GV+++L S + E+ ++ + ++ GR+ Sbjct: 183 YSERHGVTVLLSSHNMYEVESVCSEITMISSGRI 216 Score = 77.0 bits (188), Expect = 1e-15 Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 24/250 (9%) Query: 3 RPVVSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEI 62 +P V G+ K G LK V L + G V G++G NGAGK+TL + L G+Y D G + Sbjct: 6 QPAVEAEGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRV 65 Query: 63 LWEGRPVQFQSVFDAQRQGISIIFQEFNLC----PNTSVLDNLFLGREVSRGLFLDYRKM 118 G PV +R G S+ + L P ++ + FL S D Sbjct: 66 ALLGEPV--------ERAGGSLFRRVAYLPEDGEPYRNMTGHEFLRLYASIYGVEDLEGY 117 Query: 119 REEARGIFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIA 178 EEA + + L V S +++ + +A L +K + ++DEPT+ L Sbjct: 118 LEEASRLSG---LGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSV 174 Query: 179 KLFQVIRDLKEQ-GISVIFISHKLEEVLAITDRVVVLRDGERV-----GETPTR---EAT 229 + +++++ E+ G++V+ SH + EV ++ + ++ G V GE R + Sbjct: 175 GIRRLLKEYSERHGVTVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGEAVRRTGASSL 234 Query: 230 EESLVRLMVG 239 EE+ V L+ G Sbjct: 235 EEAYVALVTG 244 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 77.8 bits (190), Expect = 6e-16 Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 13/214 (6%) Query: 6 VSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILWE 65 V+ + K F A + V+ G ++G+LG NGAGK+TL+K + G+ P GEIL E Sbjct: 5 VNASALSKRFGQRYAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVE 63 Query: 66 GRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLD----NLFLGREVSRGLFLDYRKMREE 121 G + + G + P V+ L ++R + R Sbjct: 64 G--------VNPRSPGFEKLLPRIGYVPELPVVPLWTTPCILLETLARLEGYTSVEARVR 115 Query: 122 ARGIFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLF 181 AR + + + P+G+LS ++ V +A+A + + +L++DEP S L + + ++ Sbjct: 116 AREALEVVGLAGECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVR 175 Query: 182 QVIRDLKEQGISVIFISHKLEEVLAITDRVVVLR 215 +++R + +G +VI SH L E+ I V+VL+ Sbjct: 176 ELLRTVAREGATVIVSSHILRELEDIATHVLVLK 209 Score = 61.2 bits (147), Expect = 6e-11 Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 14/200 (7%) Query: 272 DVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSRGL 331 +V FT G ILGV G GAG+T ++G V+P+AG I + G P + R + Sbjct: 22 NVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVEGVNPRSPGFEKLLPR-I 79 Query: 332 VYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDLLQVKTSGP 391 Y+ E ++ + + + L RL + V R + E L V +G Sbjct: 80 GYVPE-----LPVVPLWTTPCILLETLARLEGYTSVEARVRAREA------LEVVGLAGE 128 Query: 392 SQR-VKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITELADNGVSI 450 + + LS G +++V++A+ E +L+LDEP G+D V ++ +A G ++ Sbjct: 129 CETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAREGATV 188 Query: 451 MLISSELPEILALSDRVLVM 470 ++ S L E+ ++ VLV+ Sbjct: 189 IVSSHILRELEDIATHVLVL 208 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 76.3 bits (186), Expect = 2e-15 Identities = 70/253 (27%), Positives = 126/253 (49%), Gaps = 22/253 (8%) Query: 18 VQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDE----GEILWEGRPVQFQS 73 V+A+ GV L ++ GE + ++GE+G+GKSTL + + P G IL+ G + + Sbjct: 20 VRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVGGRILYSGVDLLSLA 79 Query: 74 VFDAQR---QGISIIFQEFNLCPNTSVLDNL-FLGREVSRGLF---LDYRKMREEARGIF 126 + +R + I ++FQ+ T+ LD +G +++ L L E+ Sbjct: 80 GEELRRYRGREIGMVFQD-----PTAYLDPYRTVGSQIAESLLEHGLASSGSEAESMAGD 134 Query: 127 SYLDVDIPLDRPV---GELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLFQV 183 + V IP DR +LS +Q V IA A+ ++ ++LI DEPT+AL AK+ + Sbjct: 135 ALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKIMDL 194 Query: 184 IRDLKEQ-GISVIFISHKLEEVLAITDRVVVLRDGERVGETPTREATEESL--VRLMVGR 240 ++ L+E+ G++V+ ++H + +DR+ V+ GE V P + + M+ + Sbjct: 195 MKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDVVSNPIHPYTEMLIK 254 Query: 241 ELSDFFSHRRKKP 253 + D + R KP Sbjct: 255 SVPDPWEDREVKP 267 Score = 69.3 bits (168), Expect = 2e-13 Identities = 52/213 (24%), Positives = 105/213 (49%), Gaps = 11/213 (5%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSR 329 ++ V ++ +GE + + G G+G++ AL + + P R+ G R+ + S D +S Sbjct: 23 VDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPG---RIVGGRI-LYSGVDLLSL 78 Query: 330 GLVYLSEDRKNK-SLILE-----MSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDL 383 L R + ++ + + + + + L E + + + + ++L Sbjct: 79 AGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGLASSGSEAESMAGDALEL 138 Query: 384 LQVKTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITEL 443 + + S LSGG +Q+V IA +A EP ILI DEPT +DV +A++ ++ +L Sbjct: 139 VGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTALDVVVQAKIMDLMKKL 198 Query: 444 -ADNGVSIMLISSELPEILALSDRVLVMHEGRV 475 + G+++ML++ ++ SDR+ VM+ G + Sbjct: 199 QEERGLTVMLVTHDIGLAAEYSDRIAVMYAGEL 231 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 73.2 bits (178), Expect = 1e-14 Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 18/220 (8%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSR 329 IEDV F + RGE + G G G++ T+ L + P + G+ P P V Sbjct: 29 IEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGRIVE--GKIYYYPEPGRRVD- 85 Query: 330 GLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINR--------KKEDELCRRYI 381 ++ L E + E++ + LD L + + + E RR + Sbjct: 86 -IMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETMLAHGRVRSLREGVRRAV 144 Query: 382 DLLQ-VKTSGPSQRVKN----LSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEV 436 +L+ V P +RVK+ LSGG +Q+ VI L+ P +LI DEPT +DV +A++ Sbjct: 145 GVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLIADEPTTALDVTIQAQI 204 Query: 437 HRIITEL-ADNGVSIMLISSELPEILALSDRVLVMHEGRV 475 ++T+L ++G++++LI+ L + DRV VM+ G + Sbjct: 205 MDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNI 244 Score = 71.2 bits (173), Expect = 5e-14 Identities = 73/250 (29%), Positives = 119/250 (47%), Gaps = 31/250 (12%) Query: 4 PVVSLRGIKKSFPG----VQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPD- 58 P++ + +K F V+A++ V I GE L+GE G GKS + L+ + P Sbjct: 8 PIIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPG 67 Query: 59 ---EGEILW---EGRPVQFQSVFDAQR-----QGISIIFQEFNLCPNTSVLDNLF-LGRE 106 EG+I + GR V S+ + + + I+ IFQ+ ++ LD L+ +G + Sbjct: 68 RIVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQD-----PSAALDPLYTIGYQ 122 Query: 107 VSRGLFLD--YRKMREEAR---GIFSYLDVDIPLDRPVG---ELSVALQQMVEIAKALLM 158 V + R +RE R G+ + + P R ELS ++Q I +L Sbjct: 123 VGETMLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSN 182 Query: 159 KVRVLIMDEPTSALTEKEIAKLFQVIRDLK-EQGISVIFISHKLEEVLAITDRVVVLRDG 217 + ++LI DEPT+AL A++ ++ LK E G++++ I+H L V DRV V+ G Sbjct: 183 RPKLLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAG 242 Query: 218 ERVGETPTRE 227 V E P E Sbjct: 243 NIVEEAPVDE 252 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 72.8 bits (177), Expect = 2e-14 Identities = 67/246 (27%), Positives = 123/246 (50%), Gaps = 22/246 (8%) Query: 5 VVSLRGIKKSFPG---------VQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVY 55 +V G+KK FP V+A+ V + I G+ +GL+GE+G+GK+T +++ + Sbjct: 27 LVETVGLKKYFPVKSLFFTRAYVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLE 86 Query: 56 APDEGEILWEGRPV---QFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLF 112 P G I ++G V + + + + +R+ IIFQ+ P S+ + ++ + Sbjct: 87 EPTGGRIFFDGIDVMKLRGRGLKEFRRRA-QIIFQD----PYGSLNPRKTIFNLIAEPIK 141 Query: 113 LDYRKMREEARGIFSYLDV----DIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEP 168 + K+ + I S L + L R E S +Q + IA+ L +K +++DEP Sbjct: 142 VHGIKVGDLQEYIVSLLYQVGLNETHLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEP 201 Query: 169 TSALTEKEIAKLFQVIRDL-KEQGISVIFISHKLEEVLAITDRVVVLRDGERVGETPTRE 227 TSAL A++ +++DL ++ ++ +FISH L V ++D + V+ G+ V E Sbjct: 202 TSALDVSVQAQILNLLKDLQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEE 261 Query: 228 ATEESL 233 E+ L Sbjct: 262 VFEKPL 267 Score = 69.3 bits (168), Expect = 2e-13 Identities = 56/212 (26%), Positives = 104/212 (49%), Gaps = 16/212 (7%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSR 329 +++V + RG+ LG+ G G+G+T +++ PT G I +G V R Sbjct: 52 VDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDV-----MKLRGR 106 Query: 330 GLVYLSEDRKNKSLILEMSVRE-NMSISVLDRLSEFLHVINRKKEDELCRRYIDLLQVKT 388 G L E R+ +I + N ++ + ++E + V K D + YI L + Sbjct: 107 G---LKEFRRRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVGD--LQEYIVSLLYQV 161 Query: 389 SGPSQRV----KNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITELA 444 + SGG +Q++ IAR LA +P ++LDEPT +DV+ +A++ ++ +L Sbjct: 162 GLNETHLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQ 221 Query: 445 DN-GVSIMLISSELPEILALSDRVLVMHEGRV 475 ++ + IS +L + +SD + VM+ G++ Sbjct: 222 RKYSLTYLFISHDLGVVRYMSDYIAVMYLGKI 253 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 71.2 bits (173), Expect = 5e-14 Identities = 54/228 (23%), Positives = 108/228 (47%), Gaps = 25/228 (10%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPADAVSR 329 ++ V F++ RGE+ + G G G+T T ++ V+ T G + ++ + + R Sbjct: 50 VDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLE---ELERR 106 Query: 330 GLVYLSED---------RKNKSLILEM---------SVRENMSISVLDRLSEFLHVI-NR 370 G+ L + RK K L E+ S+ +I + +H I N Sbjct: 107 GVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGNA 166 Query: 371 KKEDELCRRYIDLLQVKTSGP--SQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGI 428 ++ +E+ R ++ +++ + + LSGG +Q+V IAR P +++ DEP + Sbjct: 167 REREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSML 226 Query: 429 DVNAKAEVHRIITELADN-GVSIMLISSELPEILALSDRVLVMHEGRV 475 DV+ +AE+ ++ + G S++ I+ +L + DR+ VM+ G++ Sbjct: 227 DVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKI 274 Score = 58.9 bits (141), Expect = 3e-10 Identities = 59/247 (23%), Positives = 106/247 (42%), Gaps = 36/247 (14%) Query: 18 VQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILWEGRPVQFQSV--- 74 V+A+ GV I GEV L+GE+G GK+T K + + G + ++ + + + Sbjct: 47 VKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERR 106 Query: 75 -------------------FDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFL-D 114 F R+ + I++Q+ P S+ + R + L + Sbjct: 107 GVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQD----PYGSLNPRFTIKRILEDPLLIHS 162 Query: 115 YRKMREEARGIFSYLDV-------DIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDE 167 RE + L+ D +DR +LS +Q V IA+A ++ +++ DE Sbjct: 163 IGNAREREEMVARMLEAVKLTPASDF-MDRYPHQLSGGQRQRVAIARAFILNPSLVVADE 221 Query: 168 PTSALTEKEIAKLFQVIRDLKEQ-GISVIFISHKLEEVLAITDRVVVLRDGERVGETPTR 226 P S L A++ +++ +E+ G S++FI+H L I DR+ V+ G+ V R Sbjct: 222 PVSMLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDAR 281 Query: 227 EATEESL 233 E + Sbjct: 282 RIIERPI 288 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 71.2 bits (173), Expect = 5e-14 Identities = 61/240 (25%), Positives = 115/240 (47%), Gaps = 10/240 (4%) Query: 6 VSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILWE 65 V + + ++ G L GV+LE +V ++G NGAGK+T +K + G+ P G + + Sbjct: 3 VRVEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLD 62 Query: 66 GRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFL-DYRKMREEARG 124 G F++ + G + N P+ L + + V L L + RE A Sbjct: 63 G----FEATGRPEMVGRYAGYVPQN--PSAPKLSPMTVREFVETSLRLRGVTRARERAVE 116 Query: 125 IFSYLDV-DIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLFQV 183 + L + L+ + ELS+ + Q V IA+A+ ++L+MDEP +++ ++ ++ Sbjct: 117 VLHTLGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARI 176 Query: 184 IRDLKEQGISVIFISHKLEEVLAITDRVVVLRDGERVGETPTREATEESLVRLMVGRELS 243 I L + + V+ SH +L TD +VV+ + + + P E E ++R + G ++ Sbjct: 177 IAGLARERL-VLMTSHDPSLLLGHTDIIVVI-NRDLIASGPPEEVYREDVLRRVYGESVA 234 Score = 67.4 bits (163), Expect = 8e-13 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 13/206 (6%) Query: 265 SGPPYIEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPA 324 +G P + V R ++ + G GAG+T ++G ++P G + L+G E Sbjct: 13 NGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLDG--FEATGRP 70 Query: 325 DAVSRGLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYIDLL 384 + V R Y+ ++ L M+VRE + S+ L + R +E + + L Sbjct: 71 EMVGRYAGYVPQNPSAPKLS-PMTVREFVETSLR------LRGVTRARERAV--EVLHTL 121 Query: 385 QVKTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIITELA 444 ++ R+ LS G Q+V IAR +A +P +L++DEP +D + E+ RII LA Sbjct: 122 GIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAGLA 181 Query: 445 DNGVSIMLISSELPEILALSDRVLVM 470 ++L++S P +L ++V+ Sbjct: 182 RE--RLVLMTSHDPSLLLGHTDIIVV 205 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 68.9 bits (167), Expect = 3e-13 Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 11/214 (5%) Query: 6 VSLRGIKKSF-PGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILW 64 V L G++ + L+GV + PG +V LLG NG+GK+TL+++L+G+ P G + Sbjct: 6 VRLEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEV 65 Query: 65 EGRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGR-EVSRGLFLDYRKMREEAR 123 G P R+ + + P ++ L R VS G+ R+ EE Sbjct: 66 CGSPP------GRVRRMLGYAPASPEVDPRLKAVEVALLYRYGVSEGVAWG-RRDWEEVL 118 Query: 124 GIFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLFQV 183 + V R GELS +++V +A L + + ++DEP S L + ++ V Sbjct: 119 AALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLV 178 Query: 184 IRDLKEQGISVIFISHKLEEVLAITDRVVVLRDG 217 +R L+ + ++++ +H +A D V++LR+G Sbjct: 179 LRSLRGRA-TIVYTTHDPLAAMA-ADSVIMLREG 210 Score = 58.2 bits (139), Expect = 5e-10 Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 29/216 (13%) Query: 265 SGPPYIEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSPA 324 + PP + V F+L G ++ + G G+G+T LL G ++P+ G + + G SP Sbjct: 17 TSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEVCG------SPP 70 Query: 325 DAVSRGLVYL----SEDRKNKSLILEMSVRENMSISVL---DRLSEFLHVINRKKEDELC 377 V R L Y D + K++ + + R +S V E L + EL Sbjct: 71 GRVRRMLGYAPASPEVDPRLKAVEVALLYRYGVSEGVAWGRRDWEEVLAALGEMGVGELA 130 Query: 378 RRYIDLLQVKTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVH 437 R R LS G ++ V++A LA P + +LDEP +DV+ V Sbjct: 131 WR--------------RWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVT 176 Query: 438 RIITELADNGVSIMLISSELPEILALSDRVLVMHEG 473 ++ L G + ++ ++ P +D V+++ EG Sbjct: 177 LVLRSL--RGRATIVYTTHDPLAAMAADSVIMLREG 210 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 67.8 bits (164), Expect = 6e-13 Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 13/214 (6%) Query: 5 VVSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPDEGEILW 64 ++ L + K G L+GV L + PGE V + G NG+GK+TL+++ +G+ P G + W Sbjct: 4 LLRLENVWKMLGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRVSW 63 Query: 65 EGRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDYRKMREEARG 124 G P R + + + + +V +N+ + G DY E R Sbjct: 64 -GCP-------RGPRGCVGYVGHTPMVYGDLTVWENVEFFSSLHGGSLGDYPLAAEAWR- 114 Query: 125 IFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIAKLFQVI 184 L ++ +LS ++ +++ +ALL + R+L++DE + L + L +++ Sbjct: 115 ---LLGLEKYGSHLASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLL 171 Query: 185 RDLKEQGISVIFISHKLE-EVLAITDRVVVLRDG 217 R +G++++ + LE L + RV L+DG Sbjct: 172 RLALGEGLALLMTTPLLEPRYLGLASRVYTLQDG 205 Score = 47.4 bits (111), Expect = 8e-07 Identities = 52/213 (24%), Positives = 90/213 (42%), Gaps = 24/213 (11%) Query: 264 LSGPPYIEDVGFTLRRGEILGVAGLIGAGRTETALLLIGAVRPTAGTIRLNGERVEIPSP 323 L G + V L GE + V+G G+G+T L G P+ G + R P Sbjct: 14 LGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRVSWGCPR----GP 69 Query: 324 ADAVSRGLVYLSEDRKNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDE--LCRRYI 381 V Y+ + +++V EN+ EF ++ + L Sbjct: 70 RGCVG----YVGH---TPMVYGDLTVWENV---------EFFSSLHGGSLGDYPLAAEAW 113 Query: 382 DLLQVKTSGPSQRVKNLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRIIT 441 LL ++ G S LS G ++++ + R L EP +L+LDE G+D A + R++ Sbjct: 114 RLLGLEKYG-SHLASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLLR 172 Query: 442 ELADNGVSIMLISSEL-PEILALSDRVLVMHEG 473 G+++++ + L P L L+ RV + +G Sbjct: 173 LALGEGLALLMTTPLLEPRYLGLASRVYTLQDG 205 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 67.0 bits (162), Expect = 1e-12 Identities = 68/232 (29%), Positives = 104/232 (44%), Gaps = 26/232 (11%) Query: 5 VVSLRGIKKSFPGVQ-ALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSGVYAPD----- 58 VV LR + +PG L+GV LE P + L G G GKST++++ +G+ Sbjct: 3 VVRLRDVWYRYPGGGWVLRGVSLEA-PRGITLLAGPTGGGKSTILRVAAGLATRIYGGYL 61 Query: 59 EGEILWEGRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDYRKM 118 GE+ G+PV +D ++ +E C S L RE R + Sbjct: 62 RGEVEARGKPVLVPQDYDLFILSLTPR-EELEYCYEASGLPPWEARREAVR--------L 112 Query: 119 REEARGIFSYLDVDIPLDRPVGELSVALQQMVEIAKALLMKVRVLIMDEPTSALTEKEIA 178 EE L ++ LDR V +LS +Q V IA AL + VL+MDEP + + Sbjct: 113 AEE-------LGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVE 165 Query: 179 KLFQVIRDLKEQGISVIFISHKLEEVLAITDRVVVLRDGERVGETPTREATE 230 L +++R L +G V+ H++ +L V ++ DG R + EA E Sbjct: 166 SLIRLLRRLDVEG--VVVAEHRVHYLLPAASSVYLVYDG-RAKQLGPGEAVE 214 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 61.2 bits (147), Expect = 6e-11 Identities = 61/245 (24%), Positives = 115/245 (46%), Gaps = 16/245 (6%) Query: 6 VSLRGIKKSFPGVQALKGVDLEIHPGEVVGLLGENGAGKSTLMKILSG--VYAPDEGEIL 63 + ++G+ L VD ++ GEV ++G NG+GKS+L ++ G +Y EG+IL Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 64 WEGRPVQFQSVFDAQRQGISIIFQEFNLCPNTSVLDNLFLGREVSRGLFLDYRKMREE-- 121 +G ++ + +GI + Q+ P L +L + R D K + Sbjct: 63 LDGESIKELPPEERALKGIFMAQQDPPQIPGVR-LSSLIIAFVNKRLGAQDLSKPADPKI 121 Query: 122 ARGIFSYLDVDIPLDRPV--GELSVAL----QQMVEIAKALLMKVRVLIMDEPTSALTEK 175 + ++ Y + LDR + E++V ++ E+ +A++ +++I+DEP S L Sbjct: 122 VKRMYEYA-TKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDID 180 Query: 176 EIAKLFQVIRDLKEQGISVIFISHKLEEVLAI-TDRVVVLRDGE---RVGETPTREATEE 231 + + + I+ L++ G V+ I+H + + DRV VL G R G R+ E+ Sbjct: 181 GLKIVAEFIKQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGSVLARGGAELARQVEEK 240 Query: 232 SLVRL 236 +L Sbjct: 241 GYAQL 245 Score = 59.7 bits (143), Expect = 2e-10 Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 18/216 (8%) Query: 270 IEDVGFTLRRGEILGVAGLIGAGRTETALLLIG--AVRPTAGTIRLNGERVEIPSPADAV 327 + V F L+ GE+ V G G+G++ +++G G I L+GE ++ P + Sbjct: 18 LNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDILLDGESIKELPPEERA 77 Query: 328 SRGLVYLSEDR------KNKSLILEMSVRENMSISVLDRLSEFLHVINRKKEDELCRRYI 381 +G+ +D + SLI+ V + + L + ++ ++ R E Y Sbjct: 78 LKGIFMAQQDPPQIPGVRLSSLIIAF-VNKRLGAQDLSKPAD-PKIVKRMYE------YA 129 Query: 382 DLLQVKTSGPSQRVK-NLSGGNQQKVVIARCLAAEPLILILDEPTRGIDVNAKAEVHRII 440 L + ++ V SGG +++ + + + +P I+ILDEP G+D++ V I Sbjct: 130 TKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGLKIVAEFI 189 Query: 441 TELADNGVSIMLISSELPEI-LALSDRVLVMHEGRV 475 +L D+G +MLI+ + DRV V++ G V Sbjct: 190 KQLRDSGRGVMLITHYARLLNFVEPDRVTVLYRGSV 225 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 496,945 Number of Sequences: 1700 Number of extensions: 22924 Number of successful extensions: 316 Number of sequences better than 1.0e-04: 39 Number of HSP's better than 0.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115 Number of HSP's gapped (non-prelim): 93 length of query: 504 length of database: 492,079 effective HSP length: 81 effective length of query: 423 effective length of database: 354,379 effective search space: 149902317 effective search space used: 149902317 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719730|ref|YP_003875262.1| transporter [Spirochaeta thermophila DSM 6192] (323 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.143 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 230,715 Number of Sequences: 1700 Number of extensions: 8087 Number of successful extensions: 27 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 0 length of query: 323 length of database: 492,079 effective HSP length: 77 effective length of query: 246 effective length of database: 361,179 effective search space: 88850034 effective search space used: 88850034 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719731|ref|YP_003875263.1| ribose ABC transporter [Spirochaeta thermophila DSM 6192] (318 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 269,094 Number of Sequences: 1700 Number of extensions: 10718 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 318 length of database: 492,079 effective HSP length: 77 effective length of query: 241 effective length of database: 361,179 effective search space: 87044139 effective search space used: 87044139 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719732|ref|YP_003875264.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (376 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 414,496 Number of Sequences: 1700 Number of extensions: 19917 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 376 length of database: 492,079 effective HSP length: 78 effective length of query: 298 effective length of database: 359,479 effective search space: 107124742 effective search space used: 107124742 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719733|ref|YP_003875265.1| hypothetical protein STHERM_c20580 [Spirochaeta thermophila DSM 6192] (758 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.140 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 969,898 Number of Sequences: 1700 Number of extensions: 52200 Number of successful extensions: 143 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 143 Number of HSP's gapped (non-prelim): 0 length of query: 758 length of database: 492,079 effective HSP length: 84 effective length of query: 674 effective length of database: 349,279 effective search space: 235414046 effective search space used: 235414046 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719734|ref|YP_003875266.1| oxidoreductase FAD/NAD(P)-binding domain-containing protein [Spirochaeta thermophila DSM 6192] (264 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 278,475 Number of Sequences: 1700 Number of extensions: 11915 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 264 length of database: 492,079 effective HSP length: 75 effective length of query: 189 effective length of database: 364,579 effective search space: 68905431 effective search space used: 68905431 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719735|ref|YP_003875267.1| dihydroorotate dehydrogenase [Spirochaeta thermophila DSM 6192] (303 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430958|ref|NP_147090.2| dihydroorotate dehydrogenase 1B [A... 152 1e-38 >gi|118430958|ref|NP_147090.2| dihydroorotate dehydrogenase 1B [Aeropyrum pernix K1] Length = 306 Score = 152 bits (383), Expect = 1e-38 Identities = 95/295 (32%), Positives = 138/295 (46%), Gaps = 3/295 (1%) Query: 2 DLSVKIGGKALPNPVGAASGTIGYGSEYEALVDYRTLGALYTKAITREPREGNPIPRIVE 61 +LS+ I G L PVG ASG +G+ LV+ G K++T +PR+G P P + Sbjct: 6 ELSISIAGLRLQRPVGNASGILGWEPREARLVEEGGGGFFVAKSVTYQPRKGYPQPHLYP 65 Query: 62 TTAGLLNSIGLANVGMERFVTEKWPYLKTLPCPVIGNIAGSDPEEYAEVVSFLEAHTDLW 121 G++N++GLAN G ++ PVI +IAG P E+ E+ S LE + Sbjct: 66 VAGGIVNAVGLANPGFREASKMLAQTVEEASIPVIASIAGGAPGEWVEMASTLE-EAGVS 124 Query: 122 GYEINISCPNVKKGGITIGTDPXXXXXXXXXXXXXXXKPLIVKLTPNVTXXXXXXXXXXX 181 E+N+SCP+ GG+ +G DP P+I KL + Sbjct: 125 AVELNLSCPHFAGGGLELGQDPAAVASVVSAVASTLRIPVIAKLGYS-DRLVDAASKALE 183 Query: 182 XXXXXLSCINTVVGMAIDIRKKRPVIPQKTAGLSGPAIKPIGXXXXXXXXXXXXXXXXXX 241 L+ IN++ M ID+ K+PV+ + GLSG I PI Sbjct: 184 AGARGLTLINSMRAMKIDVYAKKPVLGNRVGGLSGKPIHPIAVRAVYEVYGETRADIFAA 243 Query: 242 XXXMEPEDAIEYLLAGATAVQVGTA-LFVDPRTPSRILKGITSYMAQEGFTSLED 295 EDA+E+ LAGA AVQVG A + + P I++G+ Y+ EGF SL+D Sbjct: 244 GGVESWEDAVEFYLAGAKAVQVGAAFITIGPHVLRSIVEGVRRYLWVEGFRSLQD 298 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.137 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 274,102 Number of Sequences: 1700 Number of extensions: 10598 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 1 length of query: 303 length of database: 492,079 effective HSP length: 76 effective length of query: 227 effective length of database: 362,879 effective search space: 82373533 effective search space used: 82373533 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719736|ref|YP_003875268.1| endonuclease III [Spirochaeta thermophila DSM 6192] (238 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431238|ref|NP_147565.2| U/G and T/G mismatch-specific DNA ... 96 8e-22 gi|118430904|ref|NP_147001.2| endonuclease III [Aeropyrum pernix... 84 3e-18 >gi|118431238|ref|NP_147565.2| U/G and T/G mismatch-specific DNA glycosylase [Aeropyrum pernix K1] Length = 223 Score = 95.9 bits (237), Expect = 8e-22 Identities = 65/212 (30%), Positives = 106/212 (50%), Gaps = 17/212 (8%) Query: 4 RRKRFE--RLYGILEEEYPDTSSFISFAEPFQLLVGVILSAQSTDRQVNLILPELFARFP 61 RR+ E R+YG + + +T A+P+ +LV L ++T RQV + E R+P Sbjct: 13 RRRLIEWYRVYGDKDLPWRNT------ADPWAILVAAFLLRKTTARQVVRVYEEFLRRYP 66 Query: 62 TPGDLAEAPVEEIEALVRSVGFFRMKARNIKETARLVHERWGGRVPERMEDLLLLPGVGR 121 P LA A +E+ L+R +G +A+++ E A+ + R+GGR+P E L LPGVG Sbjct: 67 NPKALASAREDEVRELIRPLGIEHQRAKHLIELAKHIEARYGGRIPCSKEKLKELPGVGD 126 Query: 122 KSANVIRGTIYGRPAIIVDTHFGRVVRRLGLTEEHSPERIERDLASW------IP--PEK 173 A+ + G P ++D + R++ R+ L + + +R D W +P P+ Sbjct: 127 YIASEVLLAACGSPEPLLDRNMIRILERV-LGVKSAKKRPHTDPKMWSTARRIVPKDPDM 185 Query: 174 QYPFSMRVNRHGRAVCTARRPACASCRLAPFC 205 F+ + R +CTAR+P C C L C Sbjct: 186 AKEFNYGMLDLARKICTARKPLCTECPLNDIC 217 >gi|118430904|ref|NP_147001.2| endonuclease III [Aeropyrum pernix K1] Length = 229 Score = 84.0 bits (206), Expect = 3e-18 Identities = 65/201 (32%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 18 EYPDTSSFISFAEPFQLLVGVILSAQSTDRQVNLILPELFARFP---TPGDLAEAPVEEI 74 EY ++ + PF +L V+LS + D+ N I L R TP + EA +++ Sbjct: 29 EYVALVAYETDGNPFAVLAAVVLSQNTNDK--NSIRAYLKLRQTIGVTPEAILEASYDDL 86 Query: 75 EALVRSVGFFRMKARNIKETARLVHERWGGR------VPERM-EDLLLLPGVGRKSANVI 127 +R G R KA +K A V RWGG PE + E L+ + G+G K+A+V Sbjct: 87 VEAIREAGLPRQKASALKALAEAV-VRWGGENYLLKAPPEELREKLMSIRGIGPKTADVF 145 Query: 128 RGTIYGRPAII-VDTHFGRVVRRLGLTEEHSP-ERIERDLASWIPPEKQYPFSMRVNRHG 185 + P + VDTH RV RR GL E + + I + L ++ P + G Sbjct: 146 LSLVRKAPGVFAVDTHAARVARRWGLVGEKAGYDEISKALYNYFGPGNSEEAHRLIIALG 205 Query: 186 RAVCTARRPACASCRLAPFCP 206 R C ARRP C C L CP Sbjct: 206 RTYCKARRPRCRECPLRSVCP 226 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.139 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 245,584 Number of Sequences: 1700 Number of extensions: 10512 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 2 length of query: 238 length of database: 492,079 effective HSP length: 74 effective length of query: 164 effective length of database: 366,279 effective search space: 60069756 effective search space used: 60069756 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719737|ref|YP_003875269.1| cellulase, glycosyl hydrolase family 5, TPS linker, domain X [Spirochaeta thermophila DSM 6192] (541 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.137 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 551,153 Number of Sequences: 1700 Number of extensions: 24673 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 0 length of query: 541 length of database: 492,079 effective HSP length: 81 effective length of query: 460 effective length of database: 354,379 effective search space: 163014340 effective search space used: 163014340 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719738|ref|YP_003875270.1| glycoside hydrolase family 9, CBM3, linker, domain X [Spirochaeta thermophila DSM 6192] (805 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 801,645 Number of Sequences: 1700 Number of extensions: 34869 Number of successful extensions: 68 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 0 length of query: 805 length of database: 492,079 effective HSP length: 84 effective length of query: 721 effective length of database: 349,279 effective search space: 251830159 effective search space used: 251830159 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719739|ref|YP_003875271.1| glycoside hydrolase family 9, CBM3, linker, domain X [Spirochaeta thermophila DSM 6192] (762 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 834,113 Number of Sequences: 1700 Number of extensions: 38315 Number of successful extensions: 70 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 0 length of query: 762 length of database: 492,079 effective HSP length: 84 effective length of query: 678 effective length of database: 349,279 effective search space: 236811162 effective search space used: 236811162 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719740|ref|YP_003875272.1| glycosyl hydrolase family 12, linker, domain X [Spirochaeta thermophila DSM 6192] (438 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 408,560 Number of Sequences: 1700 Number of extensions: 17015 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 438 length of database: 492,079 effective HSP length: 80 effective length of query: 358 effective length of database: 356,079 effective search space: 127476282 effective search space used: 127476282 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719741|ref|YP_003875273.1| fumarate hydratase class II [Spirochaeta thermophila DSM 6192] (459 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431603|ref|NP_148185.2| fumarate hydratase [Aeropyrum pern... 257 5e-70 >gi|118431603|ref|NP_148185.2| fumarate hydratase [Aeropyrum pernix K1] Length = 444 Score = 257 bits (656), Expect = 5e-70 Identities = 152/438 (34%), Positives = 230/438 (52%), Gaps = 8/438 (1%) Query: 22 GAQTQRSLENFPIGEESFPPLFXXXXXXXXXXXXXXNQALGVLEPPLAGAISKACDEIIQ 81 G +R++ F FP N LG+L+ A AI +A E+ + Sbjct: 2 GKYVERAVRVFLNTGTRFPERIVWAIGMVKYSAAKANMELGLLDEKRASAIMQAALEVAE 61 Query: 82 GKWEDQFPLKVWQTGSGTQTNMNLNEVIANRANEILGAPRGSKTPVHPNDHVNRSQSSND 141 GK D+ + V+QTGSGT NMN+NEVIA RA+EI G VHPNDHVN SQSSND Sbjct: 62 GKHSDKIVVDVFQTGSGTGLNMNVNEVIAERASEIAGVD------VHPNDHVNMSQSSND 115 Query: 142 TFPAAMHLSTLMALNEQLYPALDALLTTLSQKVEAFKEVVKVGRTHLQDAVPLTLGQEFS 201 P A+ L+ A+ +L P+L+ ++ +L + VVK GRTHL+DA+P+T GQE Sbjct: 116 VIPTAIRLAAASAVLSELVPSLETIINSLGSAEAKYARVVKPGRTHLRDALPVTFGQEMG 175 Query: 202 GYLHQVRSARXXXXXXXXXXXXXXXGGTAVGTGLNAPEGFAEKACAYLREQTHLLVRPAR 261 + GGTAVGTG+NA + +A + L E+T + V+PA Sbjct: 176 AFKDAFSKDLAMVREALEAVLEVPLGGTAVGTGINAHPEYPRRAVSILAEKTGIPVKPAA 235 Query: 262 NRYALIAAHDIFXXXXXXXXXXXXXXYKLASDIRLMGSGPRCGIGELILPANEPGSSIMP 321 +R+ + ++L+ D+RLM SGP GI E+ +P PGSS+MP Sbjct: 236 SRFRAMRLVTDLAMLTAAVRSVAIDLWRLSQDLRLMYSGPFTGIAEVEIPQEVPGSSMMP 295 Query: 322 GKVNPTQAEALTMVCFQVMGLSQAVTFACSQGHLELNTYKPLIIHDILLSIRLLSEAMES 381 GKVNP EA + L ++ A G EL+ PL + + +++EA+ Sbjct: 296 GKVNPVTLEAAMQAASYAIALDSSLVQASLLGEFELSMGLPLAGYAAVRQAEIVAEALRK 355 Query: 382 FRIRCLEGVRPDTRRIQEYLEKTLMLVTVLTPHIGYERAAQVAKKAYEEGKTLRQAAREL 441 + V P R++E E++ L+T++ P IGYE+AA+V++ Y EG+++R+A + + Sbjct: 356 TAGLVIGRVEPRVERMRELAERSQALITLVAPIIGYEKAAEVSRMLY-EGRSIREALKAV 414 Query: 442 GYLTEEEFDRLVDPKGMV 459 G L +E ++L+D + +V Sbjct: 415 G-LGDEAIEKLLDLEKLV 431 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 393,246 Number of Sequences: 1700 Number of extensions: 14061 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 1 length of query: 459 length of database: 492,079 effective HSP length: 80 effective length of query: 379 effective length of database: 356,079 effective search space: 134953941 effective search space used: 134953941 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719742|ref|YP_003875274.1| transposase of ISLsa3, OrfA [Spirochaeta thermophila DSM 6192] (158 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 151,637 Number of Sequences: 1700 Number of extensions: 5862 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 158 length of database: 492,079 effective HSP length: 70 effective length of query: 88 effective length of database: 373,079 effective search space: 32830952 effective search space used: 32830952 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719743|ref|YP_003875275.1| transposase of ISLsa3, OrfB [Spirochaeta thermophila DSM 6192] (272 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.135 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 269,667 Number of Sequences: 1700 Number of extensions: 11097 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 272 length of database: 492,079 effective HSP length: 75 effective length of query: 197 effective length of database: 364,579 effective search space: 71822063 effective search space used: 71822063 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719744|ref|YP_003875276.1| hypothetical protein STHERM_c20710 [Spirochaeta thermophila DSM 6192] (135 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 143,130 Number of Sequences: 1700 Number of extensions: 5965 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 135 length of database: 492,079 effective HSP length: 68 effective length of query: 67 effective length of database: 376,479 effective search space: 25224093 effective search space used: 25224093 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719745|ref|YP_003875277.1| hypothetical protein STHERM_c20720 [Spirochaeta thermophila DSM 6192] (241 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 201,627 Number of Sequences: 1700 Number of extensions: 7305 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 241 length of database: 492,079 effective HSP length: 74 effective length of query: 167 effective length of database: 366,279 effective search space: 61168593 effective search space used: 61168593 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719746|ref|YP_003875278.1| hypothetical protein STHERM_c20730 [Spirochaeta thermophila DSM 6192] (574 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 485,113 Number of Sequences: 1700 Number of extensions: 18894 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 574 length of database: 492,079 effective HSP length: 82 effective length of query: 492 effective length of database: 352,679 effective search space: 173518068 effective search space used: 173518068 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719747|ref|YP_003875279.1| aconitate hydratase [Spirochaeta thermophila DSM 6192] (871 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431535|ref|NP_148060.2| aconitate hydratase [Aeropyrum per... 809 0.0 >gi|118431535|ref|NP_148060.2| aconitate hydratase [Aeropyrum pernix K1] Length = 903 Score = 809 bits (2090), Expect = 0.0 Identities = 445/856 (51%), Positives = 551/856 (64%), Gaps = 18/856 (2%) Query: 30 MPYSMRVLLENVARGVALGRVEEEMAARVGAWQGYVGT-EVAYFPARVLMQDFTGVPAVV 88 +PYS+RVLLENV R V +E V W Y G +V + P RV+MQDFTGVPAVV Sbjct: 42 LPYSIRVLLENVVRHYDGFVVRDEDVEAVARWSEYAGRKDVPFHPVRVVMQDFTGVPAVV 101 Query: 89 DLAVMRDAVAEKGGDPSRVTPQIPVDLVVDHSVQLDFWARRDALERNVEKEYERNGERYR 148 DLA MRDA+ + GGDPS+V P IPVDL++DHS+Q+D++ +A N+++EYERN ERY+ Sbjct: 102 DLAAMRDAMKQFGGDPSKVNPLIPVDLIIDHSIQVDYYGTAEAFRLNLKREYERNRERYQ 161 Query: 149 LLKWAGRSMANFRVVPPNSGICHQINVEYLAQVVREEVRDGMVLWYPDSLVGTDSHTTMX 208 LLKWA ++ +NFRVVPP GI HQ+N+EYLA+VV R+G + +PDSL+GTDSHTTM Sbjct: 162 LLKWAQKAFSNFRVVPPGKGIIHQVNLEYLARVVWLSRRNGTLYAHPDSLLGTDSHTTMI 221 Query: 209 XXXXXXXXXXXXIEAEAVMLGEAYVMPLPEVVGVRLVGRMPEGVTATDVVLTLTHLLRKK 268 IEAEAV+LG+ Y M LPEVVGVRLVG + EGVT TD+VL +T LRKK Sbjct: 222 NGLGVFGWGVGGIEAEAVILGQPYYMLLPEVVGVRLVGELREGVTTTDLVLYITEKLRKK 281 Query: 269 GVVGKFVEYFGPALSQLSVPDRVTIANMAPEYGATMGFFPVDERTVAFLRMTGXXX-XXX 327 VVGKFVEYFG + +LSVPDR TIANMAPEYGATMGFFPVDE T+ +LR TG Sbjct: 282 NVVGKFVEYFGEGVKKLSVPDRATIANMAPEYGATMGFFPVDEATLEYLRGTGRPEWLVQ 341 Query: 328 XXXXYLKEVGLWY---DPSVEPVYSDVLELDLSTVEPTLAGPYRPQDXXXXXXXXXXXXX 384 Y KE GLWY DP EP YSDV+E+DLS VEP+++GP P+D Sbjct: 342 LVERYTKETGLWYSLEDP--EPRYSDVVEIDLSDVEPSISGPSHPEDRIPLREAKERVRK 399 Query: 385 XXXXXXXXX----XXXXXXXXXXXXXXPHGAVAIASITSCTNTSNPAVMLGAGLVARRAV 440 G+V A++TSCTNTSNP+VM+ A L+AR AV Sbjct: 400 IIMEYLEKKGRGPAIVELKLGDEEVHLTDGSVVYAALTSCTNTSNPSVMIAAALLARNAV 459 Query: 441 ERGMRVPRWVKTSLAPGSRVVVDYLARAGVLGALEELGFSVAAFGCATCIGNSGPLPAAL 500 ++G+R WVKTS APGSRVV +Y R G++ LE LGF + +GC CIGNSGPL + Sbjct: 460 KKGLRTRPWVKTSNAPGSRVVPEYWNRLGLMPYLEALGFHITGYGCTVCIGNSGPLRPEI 519 Query: 501 ERAADE-GLLLASVASGNRNFEARIHQKVRFNILASPIYVVLYALAGSVMKDLSREPVGK 559 E A E L +A+V SGNRNF RIH R N LASP VV YALAG V D +EPVG Sbjct: 520 EEAIREHDLWVATVLSGNRNFSGRIHPLARGNFLASPPLVVAYALAGRVDIDFEKEPVGY 579 Query: 560 DREGRDVFLHELLPSPEEIARLVEEVVIGEDFERRYAGIFEGDERWRGLEGGEGILFSWD 619 D G V+L +L PS E+ +E+ + + F +Y I +GD+ W L+ EG L+SWD Sbjct: 580 DPNGNPVYLRDLWPSQREVREAIEKALDPQLFVEKYKDIDKGDKFWEELKAPEGELYSWD 639 Query: 620 EASTYIRKPPFFE---LEGLPER-IERARVLGFFGDSVTTDHISPAGAIPPDYPAGRYLQ 675 STYIRKPP+F+ LE P R I ARVL + D +TDHISPAG I PD AG+YL Sbjct: 640 PKSTYIRKPPYFDNMPLEPQPPRDIRGARVLVWAPDRTSTDHISPAGRISPDSKAGQYLI 699 Query: 676 ELGVRPEEFNSYGSRRGNHEVMMRGTFANIRLKNRLTPDVPGGYTLLFPERTQSFIYDAA 735 E GV P + N+ GSRRGNHEVMMR TF N R +N+L PD GG+T+ +P ++DAA Sbjct: 700 EQGVPPSQLNTCGSRRGNHEVMMRCTFDNPRFRNKLVPDREGGWTIFWPTGEVMHVFDAA 759 Query: 736 MEYRRRGVPLVVLGGREYGTGSSRDWAAKGTRLLGVRAVLARSFERIHRSNLVGMGVLPL 795 M+YR GVPL+VL G++YG GSSRDWAAKG LLGV+AV+A S+ERIHRSNLVGMGVLPL Sbjct: 760 MKYREMGVPLIVLAGKQYGVGSSRDWAAKGPALLGVKAVIAESYERIHRSNLVGMGVLPL 819 Query: 796 CFPEGKSX--XXXXXXXXXXXXXXXXXXXPRKRCLVRAERDGREVARFEAEAQVFSQVEV 853 F G++ P K VRA + V F+ +A++ + +EV Sbjct: 820 EFMPGENAEKLGLDGSEEYDIIGIEEGLSPGKILTVRARKSDGRVIEFKVKARLDTPIEV 879 Query: 854 AYLAAGGLLPYVLGKL 869 Y GG+L YVL KL Sbjct: 880 EYYKHGGILQYVLRKL 895 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 892,720 Number of Sequences: 1700 Number of extensions: 43417 Number of successful extensions: 149 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 141 Number of HSP's gapped (non-prelim): 2 length of query: 871 length of database: 492,079 effective HSP length: 85 effective length of query: 786 effective length of database: 347,579 effective search space: 273197094 effective search space used: 273197094 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719748|ref|YP_003875280.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (473 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 462,200 Number of Sequences: 1700 Number of extensions: 20181 Number of successful extensions: 87 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87 Number of HSP's gapped (non-prelim): 0 length of query: 473 length of database: 492,079 effective HSP length: 80 effective length of query: 393 effective length of database: 356,079 effective search space: 139939047 effective search space used: 139939047 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719749|ref|YP_003875281.1| hypothetical protein STHERM_c20770 [Spirochaeta thermophila DSM 6192] (395 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430899|ref|NP_146994.2| hypothetical protein APE_0141.1 [A... 120 4e-29 >gi|118430899|ref|NP_146994.2| hypothetical protein APE_0141.1 [Aeropyrum pernix K1] Length = 400 Score = 120 bits (302), Expect = 4e-29 Identities = 107/377 (28%), Positives = 166/377 (44%), Gaps = 19/377 (5%) Query: 30 RTEGDPAPGDIVTLRSEEGHYLGIGTHEGGN-IAVRILSFDEEEIDASFWHXXXXXXXXX 88 R G GD+V + G + G E +AVRI+ + + + Sbjct: 28 RGTGGLISGDLVEVIDRNGSEIACGLWEENTPVAVRIIHWGKCLERSPEEALERALEAAY 87 Query: 89 XXXXXXTDSPETTAYRLVHXXXXXXXXXXXXXXXXVVVFQTHSIGVHRHRESIVEALRTL 148 + E +YRL++ V V Q+ S + RH I +A+R Sbjct: 88 KARVRSKWAVEFDSYRLINSDGDRLSGLIADVYKDVAVVQSSSPAIDRHISYISQAIRKF 147 Query: 149 YGHHLKAVYDKS--RATLPPSYEMENGYLYRNGDLSLPWEIREHGLRFLVDWEEGQKTGF 206 G + VY+KS R+ L E +L + I E RF+VD E GQKTGF Sbjct: 148 TG--VTHVYEKSVQRSRLDIGLEPRRRWLMGRRKEVV---IEEGQARFIVDVERGQKTGF 202 Query: 207 YLDQRDNRALVARLA-EGRRVLNGFSYTGGFTLNALAGGAVHVTSVDRSDKALTLLERNL 265 +LDQR NR +AR+A G VL+ FSYTGGF ++AL GA ++ A+ LL +NL Sbjct: 203 FLDQRVNRLELARVAGPGDSVLDVFSYTGGFGIHALLSGASKAVFIEEDAHAVKLLRKNL 262 Query: 266 ALNDLPSGRHTSICAEVLPYLK--EHGHEYDLIILDPPAFAKH--VQHRHKAIIAYKHLN 321 LN + + + + ++ E +D++ +DPPAF + + + + AYK Sbjct: 263 RLNGIQENKALILNTSIWKAIQAGEPRESFDIVTVDPPAFIQKPGQEAKKRGFRAYKSSY 322 Query: 322 KHALRTVRPGGIMITFSCSQVVELPHFVGAVRAAAIDVGRRVTIIGTLH-QPPDHPVNIY 380 AL I+ SCS + F+ V A + + I+G + PDH +Y Sbjct: 323 LFALERAAGNSIVYLSSCSYFLSREEFITLVTEVASALEKEYRILGDVRGASPDH---VY 379 Query: 381 QPES--EYLKGLVLYVE 395 + E YLKG ++++ Sbjct: 380 RGEEYLSYLKGAFIHID 396 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 387,252 Number of Sequences: 1700 Number of extensions: 16553 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 1 length of query: 395 length of database: 492,079 effective HSP length: 79 effective length of query: 316 effective length of database: 357,779 effective search space: 113058164 effective search space used: 113058164 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719750|ref|YP_003875282.1| 2-isopropylmalate synthase [Spirochaeta thermophila DSM 6192] (553 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 550,210 Number of Sequences: 1700 Number of extensions: 24675 Number of successful extensions: 76 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76 Number of HSP's gapped (non-prelim): 0 length of query: 553 length of database: 492,079 effective HSP length: 81 effective length of query: 472 effective length of database: 354,379 effective search space: 167266888 effective search space used: 167266888 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719751|ref|YP_003875283.1| hypothetical protein STHERM_c20790 [Spirochaeta thermophila DSM 6192] (262 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.134 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 255,492 Number of Sequences: 1700 Number of extensions: 10609 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 0 length of query: 262 length of database: 492,079 effective HSP length: 75 effective length of query: 187 effective length of database: 364,579 effective search space: 68176273 effective search space used: 68176273 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719752|ref|YP_003875284.1| hypothetical protein STHERM_c20800 [Spirochaeta thermophila DSM 6192] (178 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.140 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 170,182 Number of Sequences: 1700 Number of extensions: 7343 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 178 length of database: 492,079 effective HSP length: 71 effective length of query: 107 effective length of database: 371,379 effective search space: 39737553 effective search space used: 39737553 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719753|ref|YP_003875285.1| hypothetical protein STHERM_c20810 [Spirochaeta thermophila DSM 6192] (591 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.129 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 409,566 Number of Sequences: 1700 Number of extensions: 14187 Number of successful extensions: 71 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71 Number of HSP's gapped (non-prelim): 0 length of query: 591 length of database: 492,079 effective HSP length: 82 effective length of query: 509 effective length of database: 352,679 effective search space: 179513611 effective search space used: 179513611 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719754|ref|YP_003875286.1| hypothetical protein STHERM_c20820 [Spirochaeta thermophila DSM 6192] (209 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601629|ref|NP_148169.1| 2'-5' RNA ligase [Aeropyrum pernix K1] 46 6e-07 >gi|14601629|ref|NP_148169.1| 2'-5' RNA ligase [Aeropyrum pernix K1] Length = 176 Score = 46.2 bits (108), Expect = 6e-07 Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 4/150 (2%) Query: 51 RPLKPENLHITLAFLGDTPEEEVPHLSRLLMDLPLPSRLVLTAGRPLALPSLSRISVLTL 110 + ++ EN HITL F+G+ E + L + + G A P R V+ + Sbjct: 20 KTVEDENFHITLRFIGEVSEPVAAEIGERLASIRFERFRIELRGLG-AFPRPDRPRVVWV 78 Query: 111 KVGNPGGGLEDLASSLREALLDTGHSFDPKPFKAHLTLAYLHRSLSPGEREEAREIILSL 170 VG G L + + L G S + + F H+TLA R +++ + Sbjct: 79 GVGGGAGELRRIRDEVERILTSMGFSPEKQEFHPHVTLA---RIKGARNLPALVKLLREM 135 Query: 171 PPFRFGRFSPESITLMQSTLTPAGSIFTPL 200 G SI L QS LT G I+ L Sbjct: 136 GDVEVGSVEVSSIRLKQSILTRQGPIYKTL 165 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 231,730 Number of Sequences: 1700 Number of extensions: 10475 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 1 length of query: 209 length of database: 492,079 effective HSP length: 73 effective length of query: 136 effective length of database: 367,979 effective search space: 50045144 effective search space used: 50045144 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719755|ref|YP_003875287.1| MutT/nudix family protein [Spirochaeta thermophila DSM 6192] (192 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431472|ref|NP_147971.2| ADP-ribose pyrophosphatase [Aeropy... 54 3e-09 >gi|118431472|ref|NP_147971.2| ADP-ribose pyrophosphatase [Aeropyrum pernix K1] Length = 180 Score = 53.5 bits (127), Expect = 3e-09 Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 2/109 (1%) Query: 48 PDWVNVVPLVRDPQGRECFLMVWQYRHGIGDLCLEFPGGVIDRGEQPXXXXXXXXXXXTG 107 PD V V+PLV + G ++V Q+R IG LE P G + GE P G Sbjct: 33 PDSVAVLPLV-EKDGEWHVVLVRQFRPSIGKWTLEAPAGTLKEGETPEAAAARELEEEAG 91 Query: 108 YRAGTLVLLGRIRPNPAFLDNWTYTFLATDLTLEGAQRLDEHEHIDPVL 156 +A LV +G +P + + + FLA L +G +EHE I+ V+ Sbjct: 92 LKAKALVRVGGGHVSPGYSTEYIHLFLAYSLE-KGEMSPEEHEVIEGVV 139 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 204,044 Number of Sequences: 1700 Number of extensions: 8428 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 1 length of query: 192 length of database: 492,079 effective HSP length: 72 effective length of query: 120 effective length of database: 369,679 effective search space: 44361480 effective search space used: 44361480 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719756|ref|YP_003875288.1| L-lysine 2,3-aminomutase [Spirochaeta thermophila DSM 6192] (324 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 313,694 Number of Sequences: 1700 Number of extensions: 12687 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 324 length of database: 492,079 effective HSP length: 77 effective length of query: 247 effective length of database: 361,179 effective search space: 89211213 effective search space used: 89211213 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719757|ref|YP_003875289.1| hypothetical protein STHERM_c20850 [Spirochaeta thermophila DSM 6192] (158 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.146 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 193,306 Number of Sequences: 1700 Number of extensions: 9430 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 158 length of database: 492,079 effective HSP length: 70 effective length of query: 88 effective length of database: 373,079 effective search space: 32830952 effective search space used: 32830952 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719758|ref|YP_003875290.1| hypothetical protein STHERM_c20860 [Spirochaeta thermophila DSM 6192] (317 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601541|ref|NP_148081.1| oxidoreductase [Aeropyrum pernix K1] 112 1e-26 gi|14601748|ref|NP_148289.1| oxidoreductase [Aeropyrum pernix K1] 110 4e-26 gi|118431478|ref|NP_147979.2| hypothetical protein APE_1495.1 [A... 72 2e-14 >gi|14601541|ref|NP_148081.1| oxidoreductase [Aeropyrum pernix K1] Length = 335 Score = 112 bits (280), Expect = 1e-26 Identities = 97/314 (30%), Positives = 146/314 (46%), Gaps = 32/314 (10%) Query: 5 RLGNSDMEITRIGLGAWAIGGSWRWGWGPQDERDSIAT-IHKALDMGINWIDTAPAYGLG 63 RLG + ++R+GLG W G S WG G D +A + A++ GIN +DTA YG+G Sbjct: 6 RLGRTGPRVSRVGLGLWQFG-SPMWG-GKALSADVLARGLSIAVEEGINLLDTAEVYGMG 63 Query: 64 VSEEVIGKALKERSDRP--YIFTKCGIIWDEAGNARQYISRKTILKEIDESLQRLKVDVI 121 SE ++G+ALK + R I +K AG+ I+K RL Sbjct: 64 SSERMLGEALKRLNAREDFVIVSKVAGFRSTAGD---------IVKGARGIAGRLS-SAP 113 Query: 122 DLYQIHWPTP-DDRIEEAWETLAELKEKGKVRYIGVSNFSVAQMERA----ARIAPITSL 176 D+ HWP P R+ L + +G Y G SN+ + A R+ P+ Sbjct: 114 DVILHHWPPPVYSRLCSVVRGLEQAVNEGLASYYGFSNYGEDLLGDALSCTRRLEPVAD- 172 Query: 177 QPPYSLLRREIEKEILPYCAEHGIGVIVYSPMGSGLLTGKMTRERIARLPDDDWRRNSDE 236 Q Y+L R E+ ++P +HG+ I +SP+ G L G A+ D +R ++ Sbjct: 173 QILYNLAYRTPEQRLIPLLHQHGMTPIAWSPLAKGALAGFKGEPTRAQAGDPVFRTALED 232 Query: 237 FNEPRLSRNLALVEILKEIAERHGCTPGEVAIAWVLRHPAVTGAIVGMRRPDQVDGVIHA 296 L E+L+ +A R G + VA+AWV AV IVG RRP++V A Sbjct: 233 ---------TGLQEVLESVARRLGASKASVALAWVAYKGAV--PIVGWRRPERVREAAAA 281 Query: 297 PEVSLDEDDISRLE 310 + L E+D++ L+ Sbjct: 282 ARLKLSEEDVALLD 295 >gi|14601748|ref|NP_148289.1| oxidoreductase [Aeropyrum pernix K1] Length = 272 Score = 110 bits (276), Expect = 4e-26 Identities = 89/312 (28%), Positives = 140/312 (44%), Gaps = 57/312 (18%) Query: 6 LGNSDMEITRIGLGAWAIGGSWRWGWGPQDERDSIATIHKALDMGINWIDTAPAYGLGVS 65 +G + ++ +GLG WAI +D ++ + A++ GIN IDTA YG G + Sbjct: 14 IGKTKERLSAVGLGTWAI----------RDYSSALESYVYAIERGINHIDTAEMYGAGEA 63 Query: 66 EEVIGKALKERS-DRPYIFTKCGIIWDEAGNARQYISRKTILKEIDESLQRLKVDVIDLY 124 E +GK L+ DR Y+ TK ++ +K S +R+ V +D+ Sbjct: 64 ERFVGKVLRSVGRDRVYVVTKLYPF--------RFRDPDEAVKAARASAERMGVSYVDII 115 Query: 125 QIHWPTPDDRIEEAWETLAELKEKGKVRYIGVSNFSVAQMER---AARIAPITSLQPPYS 181 IHWP P I++ ++L + E G RYIGVSNFS Q+E A + I Q YS Sbjct: 116 LIHWPDPQTPIKDQVKSLEAIAEAGLARYIGVSNFSKEQLEEALTATKKHEIVVNQVKYS 175 Query: 182 LLRREIEKEILPYCAEHGIGVIVYSPMGSGLLTGKMTRERIARLPDDDWRRNSDEFNEPR 241 +L R E E++P E I + YSP+ G Sbjct: 176 VLDRRAE-ELIPLAVEKSILLEAYSPLERG------------------------------ 204 Query: 242 LSRNLALVEILKEIAERHGCTPGEVAIAWVLRHPAVTGAIVGMRRPDQVDGVIHAPEVSL 301 ++A V +L +I ++G TP +VA+ +++ P AI R + VD ++ + L Sbjct: 205 ---HVAEVRLLAKIGRQYGKTPVQVALNFIVSRPNFI-AIPKAERREHVDEILGSLGWRL 260 Query: 302 DEDDISRLERFL 313 +DI +E L Sbjct: 261 KPEDIELIEEKL 272 >gi|118431478|ref|NP_147979.2| hypothetical protein APE_1495.1 [Aeropyrum pernix K1] Length = 326 Score = 72.0 bits (175), Expect = 2e-14 Identities = 68/299 (22%), Positives = 135/299 (45%), Gaps = 16/299 (5%) Query: 8 NSDMEITRIGLGAWAIGGSWRWGWGPQDERDSIATIHKALDMGINWIDTAPAYGLGVSEE 67 ++ M +++ G +++ G + G + +++A + A +G+ DTA YG G+ E Sbjct: 4 STKMPASKLAYGVYSLTGMY----GSVEPGEALAILRFARSLGVEHFDTADVYGNGLGER 59 Query: 68 VIGKALKERSDRPYIFTKCGIIWDEAGNARQYISRKTILKEIDESLQRLKVDVIDLYQIH 127 ++G+A ++ TK G + G + R+ + K + SL+RL V+ +DL IH Sbjct: 60 LLGEAF-PGGRGVFVATKVGYDFYSGGRPVRRYDREYLEKALRRSLERLGVESVDLLYIH 118 Query: 128 WPTPDD-RIEEAWETLAELKEKGKVRYIGVS---NFSVAQME-RAARIAPITSLQPPYSL 182 P + R E + L+ + +G + G++ VA+ A + + ++Q Y++ Sbjct: 119 NPPLEVLRGGEIYRFLSWARREGLIGMGGIALGPETDVAEEALEAVSHSEVEAVQFVYNM 178 Query: 183 LRREIEKEILPYCAEHGIGVIVYSPMGSGLLTGKMTRERIARLPDDDWRRNSDEFNEPRL 242 L +E I + E G+ + P G+L +T +L D R + Sbjct: 179 LEQEPGYTIAAWARERGVAAVARVPHAGGVLDESITPSEAEKLSDHRSLRRRGWYRWA-- 236 Query: 243 SRNLALVEILKEIAERHGCTPGEVAIAWVLRHPAVTGAIVGMRRPDQVDGVIHAPEVSL 301 + +K + E TPG+ AIA++L V ++ R +++ + +PE +L Sbjct: 237 ---FRVYGRMKPLLEGLPGTPGQKAIAFILSSAPVDSVVLIARSRERLVEYV-SPESTL 291 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 354,204 Number of Sequences: 1700 Number of extensions: 16731 Number of successful extensions: 75 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 64 Number of HSP's gapped (non-prelim): 3 length of query: 317 length of database: 492,079 effective HSP length: 77 effective length of query: 240 effective length of database: 361,179 effective search space: 86682960 effective search space used: 86682960 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719759|ref|YP_003875291.1| hypothetical protein STHERM_c20870 [Spirochaeta thermophila DSM 6192] (600 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 551,552 Number of Sequences: 1700 Number of extensions: 23041 Number of successful extensions: 70 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 0 length of query: 600 length of database: 492,079 effective HSP length: 82 effective length of query: 518 effective length of database: 352,679 effective search space: 182687722 effective search space used: 182687722 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719760|ref|YP_003875292.1| GTP-dependent nucleic acid-binding protein EngD [Spirochaeta thermophila DSM 6192] (369 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601219|ref|NP_147752.1| translation-associated GTPase [Aero... 83 1e-17 gi|118431703|ref|NP_148347.2| GTP-binding protein [Aeropyrum per... 49 2e-07 >gi|14601219|ref|NP_147752.1| translation-associated GTPase [Aeropyrum pernix K1] Length = 410 Score = 82.8 bits (203), Expect = 1e-17 Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 15/140 (10%) Query: 6 GIVGLPNVGKSTIFSALTAAPAEAANYPFCTIDPNVGI---------VEVPDPRLYRIAE 56 G+VG NVGKST F+A T P + N PF TI+PNVG+ VE+ PR + Sbjct: 9 GLVGKTNVGKSTFFAAATEVPVKIENRPFVTIEPNVGVGYARKRCAHVELGLPRCDPVNS 68 Query: 57 I-IHPRKVVPAAMEFVDIAGLVKGASKGEGLGNQFLANIRQVGIIAHVVRC--FEDPDVA 113 + I + +P ++ +D+AGLV GA +G GLGN+FL ++R+ + VV DP+ Sbjct: 69 LCIEGWRFIP--VKLLDVAGLVPGAHRGRGLGNRFLDDVRKADALLLVVDASGSTDPEGV 126 Query: 114 HVS-GKVDPAEDIATITTEL 132 V G DP E++ + E+ Sbjct: 127 PVKPGSYDPVEEVGLMLGEI 146 >gi|118431703|ref|NP_148347.2| GTP-binding protein [Aeropyrum pernix K1] Length = 389 Score = 48.9 bits (115), Expect = 2e-07 Identities = 87/380 (22%), Positives = 139/380 (36%), Gaps = 96/380 (25%) Query: 7 IVGLPNVGKSTIFSALTAAPAEAANYPFCTIDPNVGIVEVPDPRLYRIAEIIHPRKVVPA 66 ++G PN GKS+I +ALT A E A+YPF T P G++ D Sbjct: 86 LIGPPNSGKSSILAALTNAKPEVADYPFTTRMPRAGMLPYED-----------------I 128 Query: 67 AMEFVDIAGLVKGASKGEGLGNQFLANIRQVGIIAHVVRCFEDPD-VAHVSGKVDPAEDI 125 + VD L+ G+ G + N+ L R I +V +DP+ V + V ED Sbjct: 129 QFQIVDTPPLLPGS--GSSVNNRVLGLARNADAII-LVFSLDDPNLVETIDAVVREVEDR 185 Query: 126 ATITTELCLADLETVEKRLARLEKQRKSHDRIQAKQAEEAIPLLQRVGSRLSEGVPVRAQ 185 + T + LAR+ K R + G R+ EG P R Sbjct: 186 GIVITR---------RRGLARIMKSR------------------EVTGVRI-EG-PGRLT 216 Query: 186 GIEKEELERLSDLFLLTAKKQIYVCNVDEEGIHTENDYVKAVRDIAENEGAAVVVLCGKL 245 ++++ RL + + I+ Y++ + + E A + L K Sbjct: 217 DATEDDVRRL----------------LSQYRIYNAIVYIEGDVSLDDVESAVYINLVRKP 260 Query: 246 EAEIAMLEDPEERRAFLEDA--GLSEPALNVLIRAAFHTLGL--------------RTFF 289 I D R E A L E ++ ++ +A GL R + Sbjct: 261 ALAILNKADLPGAREAAEPAVKRLGEIGIDTIVASALRGDGLGEIAPRLFRMLDIVRVYT 320 Query: 290 TAGEKEARAWP--FPEGITAQEAAGLIHTDFMKGFVRAEVYRCDDLFELGSEQKIREAGR 347 KE P G T + A IH D ++ F A V+ + ++ G Sbjct: 321 KQPNKEPDKDPLVLHRGSTVMDVAKHIHKDLVRRFKYARVW----------GKSVKYPG- 369 Query: 348 LRLEGRDYIVQDGDVVYFRV 367 + G +++V+DGD+V V Sbjct: 370 -QRVGPEHVVEDGDIVEIHV 388 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 372,001 Number of Sequences: 1700 Number of extensions: 17135 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 4 length of query: 369 length of database: 492,079 effective HSP length: 78 effective length of query: 291 effective length of database: 359,479 effective search space: 104608389 effective search space used: 104608389 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719761|ref|YP_003875293.1| hypothetical protein STHERM_c20890 [Spirochaeta thermophila DSM 6192] (175 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.140 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 182,844 Number of Sequences: 1700 Number of extensions: 7565 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 175 length of database: 492,079 effective HSP length: 71 effective length of query: 104 effective length of database: 371,379 effective search space: 38623416 effective search space used: 38623416 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719762|ref|YP_003875294.1| 3-isopropylmalate dehydratase large subunit [Spirochaeta thermophila DSM 6192] (428 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431535|ref|NP_148060.2| aconitate hydratase [Aeropyrum per... 84 9e-18 >gi|118431535|ref|NP_148060.2| aconitate hydratase [Aeropyrum pernix K1] Length = 903 Score = 83.6 bits (205), Expect = 9e-18 Identities = 80/296 (27%), Positives = 126/296 (42%), Gaps = 55/296 (18%) Query: 155 PRTIKVEITGRLKPGVFAKDVILSIIHRLGVNGATDRIIEFAGPVVEDFSMESRMTLCNM 214 P + V + G L+ GV D++L I +L + +E+ G V+ S+ R T+ NM Sbjct: 250 PEVVGVRLVGELREGVTTTDLVLYITEKLRKKNVVGKFVEYFGEGVKKLSVPDRATIANM 309 Query: 215 AVEAGATSGICYPDMVTVEYLWPFIEDEYPNK--EAALEDFGRWRPDEDAE--YEEVIVH 270 A E GAT G D T+EYL E+ + E ++ G W ED E Y +V+ Sbjct: 310 APEYGATMGFFPVDEATLEYLRGTGRPEWLVQLVERYTKETGLWYSLEDPEPRYSDVVEI 369 Query: 271 DVSDLEPLVTYGYKPDLVKPVREME----------------GTRVDQVYIG--------- 305 D+SD+EP ++ P+ P+RE + G + ++ +G Sbjct: 370 DLSDVEPSISGPSHPEDRIPLREAKERVRKIIMEYLEKKGRGPAIVELKLGDEEVHLTDG 429 Query: 306 --------SCTNGRIEDLRIAAQIL------KGKKIADHVRGIVSPASPGAYAQAFKEGL 351 SCTN + IAA +L KG + V+ +P S + GL Sbjct: 430 SVVYAALTSCTNTSNPSVMIAAALLARNAVKKGLRTRPWVKTSNAPGSRVVPEYWNRLGL 489 Query: 352 LEIFMEAGFCVTNPTCGACLGMSNGVLAP--------GEVCASTT---NRNFNGRM 396 + GF +T C C+G ++G L P ++ +T NRNF+GR+ Sbjct: 490 MPYLEALGFHITGYGCTVCIG-NSGPLRPEIEEAIREHDLWVATVLSGNRNFSGRI 544 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 439,916 Number of Sequences: 1700 Number of extensions: 19793 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 2 length of query: 428 length of database: 492,079 effective HSP length: 79 effective length of query: 349 effective length of database: 357,779 effective search space: 124864871 effective search space used: 124864871 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719763|ref|YP_003875295.1| hypothetical protein STHERM_c20910 [Spirochaeta thermophila DSM 6192] (372 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.136 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 361,868 Number of Sequences: 1700 Number of extensions: 14779 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 372 length of database: 492,079 effective HSP length: 78 effective length of query: 294 effective length of database: 359,479 effective search space: 105686826 effective search space used: 105686826 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719764|ref|YP_003875296.1| hypothetical protein STHERM_c20920 [Spirochaeta thermophila DSM 6192] (110 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.485 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106,230 Number of Sequences: 1700 Number of extensions: 3778 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 110 length of database: 492,079 effective HSP length: 65 effective length of query: 45 effective length of database: 381,579 effective search space: 17171055 effective search space used: 17171055 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719765|ref|YP_003875297.1| hypothetical protein STHERM_c20930 [Spirochaeta thermophila DSM 6192] (100 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.146 0.461 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,529 Number of Sequences: 1700 Number of extensions: 3787 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 100 length of database: 492,079 effective HSP length: 64 effective length of query: 36 effective length of database: 383,279 effective search space: 13798044 effective search space used: 13798044 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719766|ref|YP_003875298.1| hypothetical protein STHERM_c20940 [Spirochaeta thermophila DSM 6192] (266 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 252,950 Number of Sequences: 1700 Number of extensions: 10927 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 266 length of database: 492,079 effective HSP length: 75 effective length of query: 191 effective length of database: 364,579 effective search space: 69634589 effective search space used: 69634589 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719767|ref|YP_003875299.1| hypothetical protein STHERM_c20950 [Spirochaeta thermophila DSM 6192] (648 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aero... 50 2e-07 gi|118431124|ref|NP_147358.2| surface layer protein [Aeropyrum p... 45 5e-06 gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad5... 44 9e-06 gi|14601261|ref|NP_147796.1| surface layer protein [Aeropyrum pe... 43 2e-05 >gi|14601572|ref|NP_148112.1| hypothetical protein APE_1708 [Aeropyrum pernix K1] Length = 791 Score = 49.7 bits (117), Expect = 2e-07 Identities = 69/335 (20%), Positives = 133/335 (39%), Gaps = 41/335 (12%) Query: 320 QITRTIESIRDLVARLDANLDATSSA----ISSIVDRIHSVV---SQIQTQARNIAESSA 372 ++T I +L+ L+ +SA + I+D +++ S + +AR++ + Sbjct: 405 ELTEVEIEIGELMEELETLQQKAASANQGEVQEILDEAGALIDRASSLLAEARSLLDEGR 464 Query: 373 AIEQMNASVQHVASLAE-DRRARTAD-LLSVIHDGGEK----VSTTNEVISSIHRXXXXX 426 E Q A+L + D + TA+ +L V+ + E+ + E ++ Sbjct: 465 IAEAKEKIAQAEAALEKADSKLDTAEAILEVVEEYAERAREAIEEAEEALAKAE-AKLQL 523 Query: 427 XXXXXXXXTVAEQTNLLS-----MNAAIESAHAGEAGRGFAVVAEEIRKLAESTGEHADR 481 V E N L + AA E+ G G V+AEE +AE E A++ Sbjct: 524 AAQLSGSEAVEEALNRLEEAKEKLEAAKEAYSNGRYGEAI-VLAEEAASIAEEAKELAEK 582 Query: 482 I----SQSLSRITDRIQQALRASDESHHAFENIRRDVSQFATALDEIAASMTELSRASSS 537 +++S + +++++ L + E+I + +EI A++ E+ Sbjct: 583 AIEAAQEAVSEVLNQVEELLDRVKDLQEEIEDIAEKAREAGVLTEEIQAAIDEVL---GK 639 Query: 538 ILSATQTINEITTRVREGAED-MMQRAGEIRDAAEGSRNISLEVRKGVEEIERGTKEILQ 596 + A + E + +EG D Q+ GE RD E + ++ ++R VE+ Sbjct: 640 LDQARSLLEEADSLAKEGDIDGARQKLGEARDVIEEAVSMVRDIRSMVEQ---------- 689 Query: 597 AVTVISDLAQEARSRMTGLRHTVDTFTLEESQADS 631 I DL E R + LR E + ++ Sbjct: 690 ---AIGDLIDELRRLIEELREKAAELNTEAAMLEA 721 Score = 45.1 bits (105), Expect = 5e-06 Identities = 62/293 (21%), Positives = 120/293 (40%), Gaps = 33/293 (11%) Query: 322 TRTIESIRDLVARLDANLDATSSAISSIVDRIHSVVSQIQTQARNIAESSAAIEQMNASV 381 T T E+ A + A L I +++ + ++ Q + + N E +++ A + Sbjct: 389 TTTREAEETEAAEVLAELTEVEIEIGELMEELETL--QQKAASANQGEVQEILDEAGALI 446 Query: 382 QHVASLAEDRRARTADLLSVIHDGGEKVSTTNEVISSIHRXXXXXXXXXXXXXTVAEQTN 441 +SL + R S++ +G +++ E I+ + E Sbjct: 447 DRASSLLAEAR-------SLLDEG--RIAEAKEKIAQAEAALEKADSKLDTAEAILEVVE 497 Query: 442 LLSMNA--AIESAHAGEAGRGFAVVAEEIRKLAESTGEHADRISQSLSRITDRIQQALRA 499 + A AIE EA A +++ A+ +G S+++ +R+++A Sbjct: 498 EYAERAREAIE-----EAEEALAKAEAKLQLAAQLSG------SEAVEEALNRLEEAKEK 546 Query: 500 SDESHHAFENIRRDVSQFATALDEIAASMTELSR--ASSSILSATQTINEITTRVREGAE 557 + + A+ N R A L E AAS+ E ++ A +I +A + ++E+ +V E + Sbjct: 547 LEAAKEAYSNGRYGE---AIVLAEEAASIAEEAKELAEKAIEAAQEAVSEVLNQVEELLD 603 Query: 558 DMMQRAGEIRDAAEGSRNISLEVRKGVEEIERGTKEILQAVTVISDLAQEARS 610 + EI D AE +R + EEI+ E+L + L +EA S Sbjct: 604 RVKDLQEEIEDIAEKAREAGVLT----EEIQAAIDEVLGKLDQARSLLEEADS 652 >gi|118431124|ref|NP_147358.2| surface layer protein [Aeropyrum pernix K1] Length = 1550 Score = 45.1 bits (105), Expect = 5e-06 Identities = 78/437 (17%), Positives = 170/437 (38%), Gaps = 88/437 (20%) Query: 134 LIDLPDIPETYKRGILQIQNYLYTIPDPPGIALLRITQAWDQVKITINTAEEFVA---QR 190 ++DL + E GI ++++ + I D L I D ++ T+ E VA Sbjct: 1166 IVDLSSVEE----GISEVKSIVLAIQDD----LTVIDTKLDSIEATVTEINEGVAILQTD 1217 Query: 191 IGRLVDEIERQVEVITTVSQWVXXXXXXXXXXXXXXXXXXXXRSLASRILRIETAMNRIR 250 +G L ++ E++ + + ++ + I + I+ Sbjct: 1218 LGNLQASVDELTELLQQTGEEITMKLD----------------EISGDLAEISNGVATIQ 1261 Query: 251 NRDLTSLHELADR---SLTASKDELAHLASHISTVLQTIRDFLLSVREASRNVEELKDXX 307 D+ ++ EL D +LT + ++A + + T+L +++D V +++ V + + Sbjct: 1262 G-DVATILELLDAMNATLTTIQGDVAEIKTTAGTILVSVQDLQTIVADSTDAVIKAVE-- 1318 Query: 308 XXXXXXXXXXXNQITRTIESIRDLVARLDANLDATSSAISSIVDRIHSVVSQIQTQARNI 367 + + ++ + ++ LD LDA +A+S V + +++ + ++ Sbjct: 1319 -----------DNVALVLDGQQLILESLDT-LDAKITAVSDGVAEVQTILGDVSVSLEDL 1366 Query: 368 AESSAAIEQMNA-SVQHVASLAEDRRARTADLLSVIHDGGEKVSTTNEVISSIHRXXXXX 426 E++A IE++ + Q +A++ TAD+ ST ++I S Sbjct: 1367 VEANATIEEVVVENNQLLATITTSMGTLTADM-----------STLKDLIES-------- 1407 Query: 427 XXXXXXXXTVAEQTNLLSMNAAIESAHAGEAGRGFAVVAEEIRKLAESTGEHADRISQSL 486 V E + +S A +A A + A V ++ K+ + I +L Sbjct: 1408 -GVNVKLDQVLEDLSTISDQNAQLAAQAEAIAQTLAAVQDDTAKITD--------IQSTL 1458 Query: 487 SRITDRIQQALRASDESHHAFENIRRDVSQFATALDEIAASMTELSRASSSILSATQTIN 546 + + + ++++D S ++ LD+ + +S S+ SA I Sbjct: 1459 ASVAGDV--------------ASVKQDTSTISSKLDDANGKLDSISSKVDSVSSAVADIQ 1504 Query: 547 EITTRVREGAEDMMQRA 563 E +V + AE RA Sbjct: 1505 EQLGQVGDTAESASGRA 1521 >gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1] Length = 919 Score = 44.3 bits (103), Expect = 9e-06 Identities = 79/415 (19%), Positives = 160/415 (38%), Gaps = 43/415 (10%) Query: 233 RSLASRILRIETAMNRIRNRDLTSLHELADRSLTASKDELAHLASHISTV--LQTIRDFL 290 ++L S I ++ET + N +TS+ L L + S IS++ L+ R L Sbjct: 250 KALQSEIGKLETMEEMLVN--VTSMIRSERSKLDTINTRLRYAESKISSIDDLEKRRAEL 307 Query: 291 LSVREASRNVEELKDXXXXXXXXXXXXXNQITRTIESIRDLVARLDAN--LDATSSAISS 348 + + V EL +++ R +E IRD V +L+ + L SA Sbjct: 308 RAKASLAHEVAEL--------ARLQSRLDKLGRDLEMIRDAVEKLEVSRRLKEIESARRE 359 Query: 349 IVDRIHSVVSQIQTQARNIAESSAAIEQMNASVQHVASLAEDRRARTA-----------D 397 +R+ S I+ + R + + + V ++ + + R++ Sbjct: 360 AENRLLEARSSIKEEQRRYTLLDYRVTRGRSIVTNIRRVLSECRSKDLCGSEKPESVLER 419 Query: 398 LLSVIHDGGEKVSTTNEVISSIHRXXXXXXXXXXXXXTVAEQTNLLSMNAAIESAHAGEA 457 L +VI+D K ++ S++ A + A Sbjct: 420 LDAVINDLESKARALDQEASALEAEARRLVQALSMLEESGGSARCPVCGAELPPGRAEAI 479 Query: 458 GRGFAVVAEEIRKLAESTGEHADRISQSLSRITDRIQQALRASDESHHAFENIR------ 511 R + AE +RK A+ A++ SR+ D+ ++ + E +R Sbjct: 480 ARHYRHEAERLRKAAKEKAAEAEKARAEASRLQDKRRRIELLLSRLNQLEEGLRELGFQT 539 Query: 512 -RDVSQFATALDEIAASMTELSRASSSILSATQTINEITTRVREG---AEDMMQRAG-EI 566 D+++ L + + EL + +S+ + ++ +RE A +++QR G + Sbjct: 540 PEDLAKAEQKLRMLRERLEELRKLENSLEEKVRNLSREEVALREAKTRALEVLQRLGIKE 599 Query: 567 RDAAEGSRNISLEVRKGVEEI------ERGTKEILQAVTVISDLAQEARSRMTGL 615 +A E + +S E +K +E + + T+ + A + DL ++AR + G+ Sbjct: 600 EEAREKLKTLSSESKK-LERMLVSKAEDLATRLGITAYRSLDDLLEKAREALEGV 653 >gi|14601261|ref|NP_147796.1| surface layer protein [Aeropyrum pernix K1] Length = 533 Score = 43.1 bits (100), Expect = 2e-05 Identities = 47/263 (17%), Positives = 98/263 (37%), Gaps = 19/263 (7%) Query: 272 LAHLASHISTVLQTIRDFLLSVREASRNVEELKDXXXXXXXXXXXXXNQITRTIESIRDL 331 +A L +S V Q + D L++ V +L+ + + + ++ D Sbjct: 239 VAPLEERLSLVEQAVEDLGLALDSLEERVGDLE----FAVEDLTLQLSSLDSRVGALEDR 294 Query: 332 VARLDANLDATSSAISSIVDRIHSVVSQIQTQARNIAESSAAIEQMNASVQHVASLAEDR 391 VA ++ L+A ++ + + ++ Q+Q A ++ S+ +E + A V V EDR Sbjct: 295 VADIEGRLEAVEGSLEDLSGAVDAMSQQLQALAEDLESLSSRVEDLEARVGSV----EDR 350 Query: 392 RARTADLLSVIHDGGEKVSTTNEVISS-IHRXXXXXXXXXXXXXTVAEQTNLLSMNAAIE 450 ++ + + + + + T E +S+ + VA L A Sbjct: 351 LSQAEEDIDSLTTSLDSLRTELEDLSTRLAEAQASLEDLNTRLDQVASTLQQLQQRLATA 410 Query: 451 SAHAGEAGRGFAVVAEEIRKLAESTGEHADRISQSLSRIT----------DRIQQALRAS 500 A + E+ L +S E R+ Q S + +++ QA + Sbjct: 411 EESLQALTEDLASLQAEVETLQQSIVEIDRRLGQLRSTVDAVRLEVESLGEKLVQAEEKN 470 Query: 501 DESHHAFENIRRDVSQFATALDE 523 + E+ + + + T LDE Sbjct: 471 QRQDASIEDFQSQIQELRTQLDE 493 Score = 41.2 bits (95), Expect = 8e-05 Identities = 33/163 (20%), Positives = 70/163 (42%), Gaps = 16/163 (9%) Query: 234 SLASRILRIETAMNRIRNRDLTSLHELADRSLTASKDELAHLASHISTVLQTIRDFLLSV 293 SL R+ +E A+ DLT D + A +D +A + + V ++ D +V Sbjct: 262 SLEERVGDLEFAVE-----DLTLQLSSLDSRVGALEDRVADIEGRLEAVEGSLEDLSGAV 316 Query: 294 REASRNVEELKDXXXXXXXXXXXXXNQITRTIESIRDLVARLDANLDATSSAISSIVDRI 353 S+ ++ L + ++ +E + V ++ L I S+ + Sbjct: 317 DAMSQQLQALAEDL-----------ESLSSRVEDLEARVGSVEDRLSQAEEDIDSLTTSL 365 Query: 354 HSVVSQIQTQARNIAESSAAIEQMNASVQHVASLAEDRRARTA 396 S+ ++++ + +AE+ A++E +N + VAS + + R A Sbjct: 366 DSLRTELEDLSTRLAEAQASLEDLNTRLDQVASTLQQLQQRLA 408 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.127 0.332 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 428,685 Number of Sequences: 1700 Number of extensions: 14871 Number of successful extensions: 95 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 80 Number of HSP's gapped (non-prelim): 11 length of query: 648 length of database: 492,079 effective HSP length: 83 effective length of query: 565 effective length of database: 350,979 effective search space: 198303135 effective search space used: 198303135 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719768|ref|YP_003875300.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (641 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.140 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 613,845 Number of Sequences: 1700 Number of extensions: 27154 Number of successful extensions: 108 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108 Number of HSP's gapped (non-prelim): 0 length of query: 641 length of database: 492,079 effective HSP length: 83 effective length of query: 558 effective length of database: 350,979 effective search space: 195846282 effective search space used: 195846282 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719769|ref|YP_003875301.1| transporter [Spirochaeta thermophila DSM 6192] (427 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601866|ref|NP_148407.1| hypothetical protein APE_2133 [Aero... 58 5e-10 gi|118431920|ref|NP_148683.2| TRAP transporter membrane-spanning... 52 4e-08 >gi|14601866|ref|NP_148407.1| hypothetical protein APE_2133 [Aeropyrum pernix K1] Length = 731 Score = 57.8 bits (138), Expect = 5e-10 Identities = 56/227 (24%), Positives = 96/227 (42%), Gaps = 17/227 (7%) Query: 42 ITKMMSSTQSF---PLLAVPFFVLA----GNLMNVSGITDRLMRYASVLAGHLRGGLAHV 94 +T +S Q F PL + ++V + ++ G+ + + L G GG A V Sbjct: 199 VTAFISQNQGFLGVPLTVMVYYVFIFLFFSSFLDKLGVGKYITDLMTALFGRKPGGPAKV 258 Query: 95 SIVLSTLMGGISGXXXXXXXXXXRILGPTMLDKGYAKGYSAAVIGLSSLIVATIPPGIG- 153 ++V S +MG ISG P M G+ + A+ ++S +PP +G Sbjct: 259 AVVSSAMMGTISGSSVANTLTTGTFTIPAMKRAGFPPEVAGAIEPVASTGGQLMPPIMGA 318 Query: 154 --LILFGYIGEVSIGRLFAAGIVPGIL--MALFMMVTASIVARRRGYQPERPHPPSFGEV 209 I+ ++G + G + A ++P IL ++++ V RR P+ PP + Sbjct: 319 AAFIMAEFVG-IPYGMVVIAALLPAILYFYSIYVFVDKESKKRRLKGLPDSELPPLRPLL 377 Query: 210 VRSTWENIYALIFPLLLIVGIRFGIFTPSEAGAFAVVYAFLVGRFVY 256 VR Y L PL+LI +R AG A V +++ +Y Sbjct: 378 VRL----YYLLPIPLILIGLLRLAPHHAVMAGILATVAVYVIDTILY 420 >gi|118431920|ref|NP_148683.2| TRAP transporter membrane-spanning component [Aeropyrum pernix K1] Length = 600 Score = 51.6 bits (122), Expect = 4e-08 Identities = 81/397 (20%), Positives = 152/397 (38%), Gaps = 34/397 (8%) Query: 43 TKMMSSTQSFPLLAVPFFVLAGNLMNVSGITDRLMRYASVLAGHLRGGLAHVSIVLSTLM 102 T + L + F+L ++ G D ++R G L ++V S ++ Sbjct: 168 TGVFEKLPQLALTLIGAFMLFISIAQAFGAVDSVIRLVIGALGSRPRLLPQAAVVGSMVI 227 Query: 103 GGISGXXXXXXXXXXRILGPTMLDKGYAKGYSAAVIGLSSLIVATIPPGIGL---ILFGY 159 +SG I P M G +AA+ SS+ +PP +G+ ++ Y Sbjct: 228 AMVSGSGAANAASTGSITIPLMKKAGMPPVKAAAIETASSIGGQLMPPIMGISAFVMADY 287 Query: 160 IGEVSIGRLFAAGIVPGILMALFMMVTASIVARRRGYQPERPHPPSFG--EVVRSTWENI 217 +G VS + A G P ++ + + A +A + +G EV ++T ++ Sbjct: 288 LG-VSYFDVVARGWAPALIYYI-GLAAAVYLASKAFLSGTAALNIGYGRLEVYKAT--SL 343 Query: 218 YALIFPLLLIVGIRFGIFTPSEAGAFAVVYA--FLVGRFVYKELSWTKFL---------- 265 A I L++++G R E A+A + + L+ E S K L Sbjct: 344 MASILLLIILMGAR------REYPAYAALQSSILLLALLAAAEASRGKSLHEVAGRILAR 397 Query: 266 --EALRQTAIDTGVIMLIIMCAGILGYVITVTRIPQSIALFLTGV-TSNPTXXXXXXXXX 322 E L+ + I +++ G++ ++T+T IP + L V N Sbjct: 398 LAETLKIFSGFVADITILLAALGVMTGLMTITGIPTRVGFLLLEVGAGNKILLVMLAFVF 457 Query: 323 XXXAGMFMEPTVNTLLLTPIFLPIMKSVGVDP--VHFGILMMTMVTLGSMTPPVGVVLYT 380 G+ + P V +L + P M G +P VHF ++ + + ++PP V Sbjct: 458 GYLVGLGLPPVVTYILTVVVIGPYMLQAGFNPWAVHFYAFLLGV--MSELSPPTSVTAAV 515 Query: 381 VCAILDVPTEDYIKDSIPFVVAVILELLLLTFFPSIV 417 I + + +SI F + + + + P +V Sbjct: 516 TSRIAGAGFVETMIESIKFAMPLFTVMAGVLLEPGLV 552 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.146 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 403,356 Number of Sequences: 1700 Number of extensions: 18008 Number of successful extensions: 91 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 87 Number of HSP's gapped (non-prelim): 3 length of query: 427 length of database: 492,079 effective HSP length: 79 effective length of query: 348 effective length of database: 357,779 effective search space: 124507092 effective search space used: 124507092 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719770|ref|YP_003875302.1| transporter [Spirochaeta thermophila DSM 6192] (155 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.141 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 117,510 Number of Sequences: 1700 Number of extensions: 3512 Number of successful extensions: 8 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 155 length of database: 492,079 effective HSP length: 70 effective length of query: 85 effective length of database: 373,079 effective search space: 31711715 effective search space used: 31711715 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719771|ref|YP_003875303.1| TRAP dicarboxylate transporter subunit DctP [Spirochaeta thermophila DSM 6192] (330 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 342,712 Number of Sequences: 1700 Number of extensions: 15295 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 330 length of database: 492,079 effective HSP length: 77 effective length of query: 253 effective length of database: 361,179 effective search space: 91378287 effective search space used: 91378287 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719772|ref|YP_003875304.1| hypothetical protein STHERM_c21000 [Spirochaeta thermophila DSM 6192] (644 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601261|ref|NP_147796.1| surface layer protein [Aeropyrum pe... 43 2e-05 gi|118431124|ref|NP_147358.2| surface layer protein [Aeropyrum p... 41 8e-05 >gi|14601261|ref|NP_147796.1| surface layer protein [Aeropyrum pernix K1] Length = 533 Score = 43.1 bits (100), Expect = 2e-05 Identities = 52/299 (17%), Positives = 110/299 (36%), Gaps = 28/299 (9%) Query: 272 LAHLASHISTVLQTIRDFLLSVREASRNVEELKDVXXXXXXXXXXXXXXITRTIESIRDL 331 +A L +S V Q + D L++ V +L+ + + ++ D Sbjct: 239 VAPLEERLSLVEQAVEDLGLALDSLEERVGDLE----FAVEDLTLQLSSLDSRVGALEDR 294 Query: 332 VTRLDANLDATTSAISSIVDRIHSVVSQIQTQARNIAESSSAIEQMNASVQHVASLAEDR 391 V ++ L+A ++ + + ++ Q+Q A ++ SS +E + A V V EDR Sbjct: 295 VADIEGRLEAVEGSLEDLSGAVDAMSQQLQALAEDLESLSSRVEDLEARVGSV----EDR 350 Query: 392 RARTADLLSVIHDGGEKVSTTNEVISS-IHRXXXXXXXXXXXXXTVAEQTNLLSMNAAIE 450 ++ + + + + + T E +S+ + VA L A Sbjct: 351 LSQAEEDIDSLTTSLDSLRTELEDLSTRLAEAQASLEDLNTRLDQVASTLQQLQQRLATA 410 Query: 451 SAHAGEAGRGFAVVAEEIRKLAESTGEHADRISQSLSRIT----------DRIQQALRAS 500 A + E+ L +S E R+ Q S + +++ QA + Sbjct: 411 EESLQALTEDLASLQAEVETLQQSIVEIDRRLGQLRSTVDAVRLEVESLGEKLVQAEEKN 470 Query: 501 DESHHAFENIRRDVSQFATALDE---------IAASMTELSRASSSILSATQTISSITQ 550 + E+ + + + T LDE AS ++ A +S+++ ++I + Sbjct: 471 QRQDASIEDFQSQIQELRTQLDEKTREAQQTASTASRWSMAAAGASLIALAAAAAAIAR 529 >gi|118431124|ref|NP_147358.2| surface layer protein [Aeropyrum pernix K1] Length = 1550 Score = 41.2 bits (95), Expect = 8e-05 Identities = 57/320 (17%), Positives = 128/320 (40%), Gaps = 29/320 (9%) Query: 253 DLTSLHELADRSLTASKDELAHLASHISTVLQTIRDFLLSVREASRNVEELKDVXXXXXX 312 +LT L + +T DE++ + IS + TI+ + ++ E ++ + Sbjct: 1227 ELTELLQQTGEEITMKLDEISGDLAEISNGVATIQGDVATILEL---LDAMNATLTTIQG 1283 Query: 313 XXXXXXXXITRTIESIRDLVTRLDANLDATTSAISSIVDRIHSVVSQIQTQARNIAESSS 372 + S++DL T + D+T + I ++ D + V+ Q ++ + Sbjct: 1284 DVAEIKTTAGTILVSVQDLQTIV---ADSTDAVIKAVEDNVALVLDGQQLILESLDTLDA 1340 Query: 373 AIEQMNASVQHVASLAEDRRARTADLLSVIHDGGEKVSTTNEVISSIHRXXXXXXXXXXX 432 I ++ V V ++ D DL+ E V N+++++I Sbjct: 1341 KITAVSDGVAEVQTILGDVSVSLEDLVEANATIEEVVVENNQLLATITTSMGTLTADMST 1400 Query: 433 XXTVAEQTNLLSMNAAIESAHAGEAGRGFAVVAEEIRKL---AESTGEHADRISQSLSRI 489 + E + ++ +E + ++++ +L AE+ + + ++I Sbjct: 1401 LKDLIESGVNVKLDQVLED---------LSTISDQNAQLAAQAEAIAQTLAAVQDDTAKI 1451 Query: 490 TDRIQQALR--ASDESHHAFENIRRDVSQFATALDEIAASMTELSRASSSILSATQTISS 547 TD IQ L A D + ++++D S ++ LD+ + +S S+ SA ++ Sbjct: 1452 TD-IQSTLASVAGDVA-----SVKQDTSTISSKLDDANGKLDSISSKVDSVSSA---VAD 1502 Query: 548 ITQKIEEGAETMLQQSGTIQ 567 I +++ + +T SG Q Sbjct: 1503 IQEQLGQVGDTAESASGRAQ 1522 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.125 0.327 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 392,751 Number of Sequences: 1700 Number of extensions: 11678 Number of successful extensions: 70 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 70 Number of HSP's gapped (non-prelim): 8 length of query: 644 length of database: 492,079 effective HSP length: 83 effective length of query: 561 effective length of database: 350,979 effective search space: 196899219 effective search space used: 196899219 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719773|ref|YP_003875305.1| hypothetical protein STHERM_c21010 [Spirochaeta thermophila DSM 6192] (108 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 125,299 Number of Sequences: 1700 Number of extensions: 4907 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 108 length of database: 492,079 effective HSP length: 65 effective length of query: 43 effective length of database: 381,579 effective search space: 16407897 effective search space used: 16407897 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719774|ref|YP_003875306.1| cellodextrin-phosphorylase [Spirochaeta thermophila DSM 6192] (808 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 900,873 Number of Sequences: 1700 Number of extensions: 42755 Number of successful extensions: 111 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111 Number of HSP's gapped (non-prelim): 0 length of query: 808 length of database: 492,079 effective HSP length: 84 effective length of query: 724 effective length of database: 349,279 effective search space: 252877996 effective search space used: 252877996 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719775|ref|YP_003875307.1| beta-glucosidase A [Spirochaeta thermophila DSM 6192] (446 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 540,113 Number of Sequences: 1700 Number of extensions: 27117 Number of successful extensions: 58 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 0 length of query: 446 length of database: 492,079 effective HSP length: 80 effective length of query: 366 effective length of database: 356,079 effective search space: 130324914 effective search space used: 130324914 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719776|ref|YP_003875308.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (302 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.140 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 307,710 Number of Sequences: 1700 Number of extensions: 13905 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 302 length of database: 492,079 effective HSP length: 76 effective length of query: 226 effective length of database: 362,879 effective search space: 82010654 effective search space used: 82010654 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719777|ref|YP_003875309.1| quinolinate synthetase A 1 [Spirochaeta thermophila DSM 6192] (359 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 340,263 Number of Sequences: 1700 Number of extensions: 14761 Number of successful extensions: 34 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 0 length of query: 359 length of database: 492,079 effective HSP length: 78 effective length of query: 281 effective length of database: 359,479 effective search space: 101013599 effective search space used: 101013599 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719778|ref|YP_003875310.1| transporter [Spirochaeta thermophila DSM 6192] (266 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 61 3e-11 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 59 2e-10 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 53 9e-09 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 53 9e-09 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 51 3e-08 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 50 5e-08 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 50 5e-08 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 49 1e-07 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 49 2e-07 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 47 4e-07 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 47 5e-07 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 45 1e-06 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 45 2e-06 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 44 3e-06 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 44 3e-06 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 44 6e-06 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 42 1e-05 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 42 1e-05 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 41 4e-05 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 41 4e-05 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 40 6e-05 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 40 8e-05 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 40 8e-05 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 61.2 bits (147), Expect = 3e-11 Identities = 56/230 (24%), Positives = 85/230 (36%), Gaps = 7/230 (3%) Query: 7 VLRCEGVGASLGDRRVLDAVGVWVKRGEVVGVLGPNGAGKSTXXXXXXXXXXXXXXXXXX 66 +L G+ S +VL V V + GE + ++GP+G+GKST Sbjct: 4 LLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVF 63 Query: 67 XXXXXRRLSQKE---IARRVGYXXXXXXXXXXXXXXXXXRMGRWPHLGRLQPEGERDARA 123 RLS + + R++GY LG + + E RA Sbjct: 64 RGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAEE--RA 121 Query: 124 VREAMXXXXXXXXXXXXXXXXXXXXXXXXXLARAFAQEPAVLLLDEPTSHLDPGFACXXX 183 V+ + LARA A EP +LLLDEPTS LDP Sbjct: 122 VKY-LSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVL 180 Query: 184 XXXXXXXXXXXXXALATFHDINLALLYADRLVCLKEGRVLASGTPEDVAD 233 + T H+ + A+ ADR+ +++G V G P ++ + Sbjct: 181 EALFRVATLGKAMIVVT-HEADFAVKVADRMAFMEDGIVKEEGKPSELVE 229 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 58.5 bits (140), Expect = 2e-10 Identities = 55/215 (25%), Positives = 79/215 (36%), Gaps = 13/215 (6%) Query: 21 RVLDAVGVWVKRGEVVGVLGPNGAGKSTXXXXXXXXXXXXXXXXXXXXXXXRRLSQKEIA 80 R LD V + V RG + +LGPNGAGK+T R++ ++ Sbjct: 27 RALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWA--------RVAGFDVV 78 Query: 81 RRVGYXXXXXXXXXXXXXXXXXRMGRWPHL---GRLQPEGERDA-RAVREAMXXXXXXXX 136 R R+ W +L +L R+A R V+E + Sbjct: 79 REANNVRSRIGVVLGGERALYWRLSGWDNLWFFSQLYGIPPREAKRRVKELLEIVGLEEW 138 Query: 137 XXXXXXXXXXXXXXXXXLARAFAQEPAVLLLDEPTSHLDPGFACXXXXXXXXXXXXXXXX 196 +AR +P VLLLDEPT LDP A Sbjct: 139 AHVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPK-AAREVRSIIRRIVREGRT 197 Query: 197 ALATFHDINLALLYADRLVCLKEGRVLASGTPEDV 231 L T H + A +DR+ + +GR++A G PED+ Sbjct: 198 VLLTTHYMVEAEELSDRVAIISKGRIVAEGPPEDL 232 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 52.8 bits (125), Expect = 9e-09 Identities = 53/233 (22%), Positives = 80/233 (34%), Gaps = 14/233 (6%) Query: 3 QDEVVLRCEGVGASLGDRRVLDAVGVWVKRGEVVGVLGPNGAGKSTXXXXXXXXXXXXXX 62 + E ++ E + G R +D V + RGE+ +LGPNGAGK+T Sbjct: 2 ESEAMVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSG 61 Query: 63 XXXXXXXXXRRLSQKEIARRVGYXXXXXXXXXXXXXXXXXRMGRWPHL---GRLQPEGER 119 R + R +G M W ++ RL Sbjct: 62 EAWIAGYSIVR-EPGNVRRVIGLVPQDLTADD--------EMSGWDNVYIQARLYGLPSS 112 Query: 120 DARA-VREAMXXXXXXXXXXXXXXXXXXXXXXXXXLARAFAQEPAVLLLDEPTSHLDPGF 178 +AR RE + +A + P VL LDEPT LD Sbjct: 113 EARERTREVLDYLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDV-H 171 Query: 179 ACXXXXXXXXXXXXXXXXALATFHDINLALLYADRLVCLKEGRVLASGTPEDV 231 + L T H + A + +DR+ + GR++A GTPE++ Sbjct: 172 SRRSLWRYIEDLKRSAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEEL 224 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 52.8 bits (125), Expect = 9e-09 Identities = 31/78 (39%), Positives = 39/78 (50%) Query: 154 LARAFAQEPAVLLLDEPTSHLDPGFACXXXXXXXXXXXXXXXXALATFHDINLALLYADR 213 LARA A EP VLLLDEP SHLD + HD A+ AD Sbjct: 149 LARAIAYEPPVLLLDEPLSHLDFKIRQRLLAELKRLQRKLGSTMIYVTHDQWEAMELADT 208 Query: 214 LVCLKEGRVLASGTPEDV 231 LV +++GR++ GTP +V Sbjct: 209 LVIMRDGRIVQHGTPSEV 226 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 51.2 bits (121), Expect = 3e-08 Identities = 51/222 (22%), Positives = 75/222 (33%), Gaps = 9/222 (4%) Query: 8 LRCEGVGASLGDRRVLDAVGVWVKRGEVVGVLGPNGAGKSTXXXXXXXXXXXXXXXXXXX 67 + EGV LG R VL V + V RG V GV+GPNGAGK+T Sbjct: 9 VEAEGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALL 68 Query: 68 XXXXRRLSQKEIARRVGYXXXXXXXXXXXXXXXXXRMGRWPHLGRLQPEGERDARA-VRE 126 R + + RRV Y R+ G D + E Sbjct: 69 GEPVER-AGGSLFRRVAYLPEDGEPYRNMTGHEFLRL-------YASIYGVEDLEGYLEE 120 Query: 127 AMXXXXXXXXXXXXXXXXXXXXXXXXXLARAFAQEPAVLLLDEPTSHLDPGFACXXXXXX 186 A +A A +P++ +LDEPT+ LDP ++ Sbjct: 121 ASRLSGLGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLL 180 Query: 187 XXXXXXXXXXALATFHDINLALLYADRLVCLKEGRVLASGTP 228 L + H++ + + GR++ SG+P Sbjct: 181 KEYSERHGVTVLLSSHNMYEVESVCSEITMISSGRIVYSGSP 222 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 50.4 bits (119), Expect = 5e-08 Identities = 55/235 (23%), Positives = 75/235 (31%), Gaps = 28/235 (11%) Query: 8 LRCEGVGASLGDRRVLDAVGVWVKRGEVVGVLGPNGAGKSTXXXXXXXXXXXXXXXXXXX 67 +R EG+ G L + + +K GE V +LGP+G GK+T Sbjct: 4 VRLEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFD 63 Query: 68 XXXXRRLSQKEIARRVGYXXXXXXXXXXXXXXXXXRMGRWPHLG-----------RLQPE 116 L K+ R V WPH+ + P Sbjct: 64 GRDVTGLPPKD--RNVAMVFQSYAL--------------WPHMRVFDNIAFPLKIKKLPR 107 Query: 117 GERDARAVREAMXXXXXXXXXXXXXXXXXXXXXXXXXLARAFAQEPAVLLLDEPTSHLDP 176 E R VR A +ARA EP VLL+DEP S+LD Sbjct: 108 DEI-VRRVRWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDA 166 Query: 177 GFACXXXXXXXXXXXXXXXXALATFHDINLALLYADRLVCLKEGRVLASGTPEDV 231 + HD A++ DR+V + G + GTP DV Sbjct: 167 ILRIKMRSEIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDV 221 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 50.4 bits (119), Expect = 5e-08 Identities = 59/237 (24%), Positives = 82/237 (34%), Gaps = 10/237 (4%) Query: 8 LRCEGVGASLGDRR-VLDAVGVWVKRGEVVGVLGPNGAGKSTXXXXXXXXXXXXXXXXXX 66 +R EGV A VL V + G +V +LGPNG+GK+T Sbjct: 6 VRLEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRVEV 65 Query: 67 XXXXXRRLSQKEIARRVGYXXXXXXXXXXXXXXXXXRMGRWPHLGRLQPEGERDARAVRE 126 R + R +GY + R+ + G RD V Sbjct: 66 CGSPPGR-----VRRMLGYAPASPEVDPRLKAVEVALLYRYG-VSEGVAWGRRDWEEVLA 119 Query: 127 AMXXXXXXXXXXXXXXXXXXXXXXXXXLARAFAQEPAVLLLDEPTSHLDPGFACXXXXXX 186 A+ LA A+ P + LLDEP S LD + Sbjct: 120 ALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLD--VSNMRRVTL 177 Query: 187 XXXXXXXXXXALATFHDINLALLYADRLVCLKEGRVLASGTPEDVADPALFRDLYGI 243 + T HD LA + AD ++ L+EG + A G PE V P ++YGI Sbjct: 178 VLRSLRGRATIVYTTHD-PLAAMAADSVIMLREGLLHAQGPPEAVVTPETIEEVYGI 233 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 48.9 bits (115), Expect = 1e-07 Identities = 56/242 (23%), Positives = 75/242 (30%), Gaps = 29/242 (11%) Query: 8 LRCEGVGASLGDRRVLDAVGVWVKRGEVVGVLGPNGAGKSTXXXXXXXXXXXXXXXXXXX 67 +R E V G+ LD V + + GE+ +LGP+G GK+T Sbjct: 4 IRLESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIG 63 Query: 68 XXXXRRLSQKEIARRVGYXXXXXXXXXXXXXXXXXRMGRWPHLG-----------RLQPE 116 L E WPH+ R P Sbjct: 64 SRDVTMLKPYE----------------RNTAMVFQNYALWPHMRVFDNIAYGLKLRKLPR 107 Query: 117 GERDARAVREAMXXXXXXXXXXXXXXXXXXXXXXXXXLARAFAQEPAVLLLDEPTSHLDP 176 E R VR A +ARA EP VLL+DEP S+LD Sbjct: 108 SEI-VRRVRWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDA 166 Query: 177 GFACXXXXXXXXXXXXXXXXALATFHDINLALLYADRLVCLKEGRVLASGTPEDVAD-PA 235 + HD AL + R+ + GRV GTP +V + PA Sbjct: 167 HLRLKMREEIVRLQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQVGTPMEVYEKPA 226 Query: 236 LF 237 + Sbjct: 227 TY 228 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 48.5 bits (114), Expect = 2e-07 Identities = 52/219 (23%), Positives = 82/219 (37%), Gaps = 14/219 (6%) Query: 20 RRVLDA---VGVWVKRGEVVGVLGPNGAGKSTXXXXXXXXXXXXXXXXXXXXXXXRRLSQ 76 RRV++A V V GE+ LGPNGAGK+T + + Sbjct: 22 RRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAGFDVVK-ER 80 Query: 77 KEIARRVGYXXXXXXXXXXXXXXXXXRMGRWPHLGRLQ--PEGERDARAVREAMXXXXXX 134 E+ +R+G + GR+ P+GE +R ++E + Sbjct: 81 WEVRKRIGVMLSVERGFYWKLTGRENLY----YFGRIYGIPQGELKSR-IKEVLDLVGLT 135 Query: 135 XXXXXXX--XXXXXXXXXXXXLARAFAQEPAVLLLDEPTSHLDPGFACXXXXXXXXXXXX 192 LAR ++P VL+LDEPT LDP A Sbjct: 136 DLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSLASE 195 Query: 193 XXXXALATFHDINLALLYADRLVCLKEGRVLASGTPEDV 231 + T H++ A + +DR+ + GR+ GTP+++ Sbjct: 196 GRTIFITT-HNMVEAEMISDRVGIIIGGRIAMEGTPDEL 233 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 47.4 bits (111), Expect = 4e-07 Identities = 27/78 (34%), Positives = 37/78 (47%) Query: 154 LARAFAQEPAVLLLDEPTSHLDPGFACXXXXXXXXXXXXXXXXALATFHDINLALLYADR 213 LARA + P V L+DEP S+LD + HD A+ ADR Sbjct: 148 LARALVRRPKVWLMDEPLSNLDALLRLAMRAELKKLQKDLKITTVYVTHDQAEAMSMADR 207 Query: 214 LVCLKEGRVLASGTPEDV 231 + + +GRV+ GTPE+V Sbjct: 208 IAVMNKGRVVQVGTPEEV 225 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 47.0 bits (110), Expect = 5e-07 Identities = 29/78 (37%), Positives = 36/78 (46%) Query: 154 LARAFAQEPAVLLLDEPTSHLDPGFACXXXXXXXXXXXXXXXXALATFHDINLALLYADR 213 LARA +EP VLLLDEP S+LD A+ HD + AL ADR Sbjct: 144 LARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKLQKELGITAIYVTHDQSEALAMADR 203 Query: 214 LVCLKEGRVLASGTPEDV 231 + + G + G P DV Sbjct: 204 IAIIASGVIQQVGKPWDV 221 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 45.4 bits (106), Expect = 1e-06 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%) Query: 154 LARAFAQEPAVLLLDEPTSHLDPGFACXXXXXXXXXXXXXXXXALATFHDINLALLYADR 213 +ARA A +P +L++DEP + +DP A L T HD +L L + D Sbjct: 145 IARAIAPDPKMLVMDEPLASVDP--AGRMEIARIIAGLARERLVLMTSHDPSLLLGHTDI 202 Query: 214 LVCLKEGRVLASGTPEDVADPALFRDLYGIEV 245 +V + ++ASG PE+V + R +YG V Sbjct: 203 IVVINRD-LIASGPPEEVYREDVLRRVYGESV 233 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 45.1 bits (105), Expect = 2e-06 Identities = 44/171 (25%), Positives = 56/171 (32%), Gaps = 9/171 (5%) Query: 6 VVLRCEGVGASLGDRRVLDAVGVWVKRGEVVGVLGPNGAGKSTXXXXXXXXXXXXXXXXX 65 VV+ EG+ G L V V GEV G LGPNGAGK+T Sbjct: 3 VVIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSAR 62 Query: 66 XXXXXXRRLSQKEIARRVGYXXXXXXXXXXXXXXXXXRMGRWPHLGRLQPEGERDARAVR 125 + RRVGY + W L G VR Sbjct: 63 VFGVELYNPGASGVRRRVGY--VPGEFEFYGGVSGGRMLDYWCRL-----VGGCSRGVVR 115 Query: 126 EAMXXXXXXXXXXXXXXXXXXXXXXXXXLARAFAQEPAVLLLDEPTSHLDP 176 E + L AF+ EP ++++DEPT+ LDP Sbjct: 116 ELL--EAFPLPLERAVGTYSRGMKQMLALVMAFSHEPDLVVMDEPTTGLDP 164 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 44.3 bits (103), Expect = 3e-06 Identities = 25/78 (32%), Positives = 35/78 (44%) Query: 154 LARAFAQEPAVLLLDEPTSHLDPGFACXXXXXXXXXXXXXXXXALATFHDINLALLYADR 213 +A A A EP +L+ DEPT+ LD + HDI LA Y+DR Sbjct: 163 IAAAVALEPKILIADEPTTALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDR 222 Query: 214 LVCLKEGRVLASGTPEDV 231 + + G ++ G EDV Sbjct: 223 IAVMYAGELVEIGPAEDV 240 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 44.3 bits (103), Expect = 3e-06 Identities = 25/78 (32%), Positives = 38/78 (48%) Query: 154 LARAFAQEPAVLLLDEPTSHLDPGFACXXXXXXXXXXXXXXXXALATFHDINLALLYADR 213 LARA A +P VLLLDEPT+++DP + H A +D+ Sbjct: 159 LARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKEEMATVIIVTHTPQQAARISDQ 218 Query: 214 LVCLKEGRVLASGTPEDV 231 ++ L EGRV+ G +++ Sbjct: 219 ILFLYEGRVIEYGPTKEL 236 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 43.5 bits (101), Expect = 6e-06 Identities = 22/44 (50%), Positives = 28/44 (63%) Query: 5 EVVLRCEGVGASLGDRRVLDAVGVWVKRGEVVGVLGPNGAGKST 48 + VL GV + VLD V + V RGE VG++GPNGAGK+T Sbjct: 2 DTVLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTT 45 Score = 41.6 bits (96), Expect = 2e-05 Identities = 27/78 (34%), Positives = 35/78 (44%) Query: 154 LARAFAQEPAVLLLDEPTSHLDPGFACXXXXXXXXXXXXXXXXALATFHDINLALLYADR 213 +A A EP L+ DEPTS+LDP L + H I L A R Sbjct: 141 IAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLNREHGLSLLVSSHVIVELLRVATR 200 Query: 214 LVCLKEGRVLASGTPEDV 231 + L GR+ A G+PED+ Sbjct: 201 IYVLAGGRLAAEGSPEDL 218 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 42.4 bits (98), Expect = 1e-05 Identities = 19/42 (45%), Positives = 28/42 (66%) Query: 7 VLRCEGVGASLGDRRVLDAVGVWVKRGEVVGVLGPNGAGKST 48 +L E + G LD V V V+RGE++G++GPNGAGK++ Sbjct: 1 MLWTENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTS 42 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 42.4 bits (98), Expect = 1e-05 Identities = 23/88 (26%), Positives = 41/88 (46%) Query: 154 LARAFAQEPAVLLLDEPTSHLDPGFACXXXXXXXXXXXXXXXXALATFHDINLALLYADR 213 +ARA + ++++DEP + ++P A L H I L Y DR Sbjct: 164 IARAIMKGAEMIIMDEPAAGVNPRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDR 223 Query: 214 LVCLKEGRVLASGTPEDVADPALFRDLY 241 + + G+V+ASG P++V + + + Y Sbjct: 224 VYAMSMGKVIASGKPDEVLNNPVVLESY 251 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 40.8 bits (94), Expect = 4e-05 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Query: 154 LARAFAQEPAVLLLDEPTSHLDPGFACXXXXXXXXXXXXXXXXALATFHDINLALLYADR 213 +ARA Q P +L++DEP+ L P A L ++ L+L ADR Sbjct: 150 IARALIQRPILLMMDEPSLGLAPKLARDVIYLASRLREELGVTILLVEQNVGLSLKVADR 209 Query: 214 LVCLKEGRVLASGTPEDVA-DPAL 236 ++ GR++ G +++A DP + Sbjct: 210 GYVMETGRIVLEGASDELALDPRI 233 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 40.8 bits (94), Expect = 4e-05 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 156 RAFAQEPAVLLLDEPTSHLDPGFACXXXXXXXXXXXXXXXXALATFHDINLALLYADRLV 215 +A A +LLDEPT+HL P A L T H I A+ +ADRLV Sbjct: 153 KALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAASGAAVLLVT-HRIGEAMEHADRLV 211 Query: 216 CLKEGRVLASGTP 228 L++G + G P Sbjct: 212 ILRKGVKVYEGPP 224 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 40.0 bits (92), Expect = 6e-05 Identities = 19/41 (46%), Positives = 29/41 (70%) Query: 8 LRCEGVGASLGDRRVLDAVGVWVKRGEVVGVLGPNGAGKST 48 L +G+ A +G++ VL+ V +K GEV V+GPNG+GKS+ Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSS 43 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 39.7 bits (91), Expect = 8e-05 Identities = 21/80 (26%), Positives = 33/80 (41%) Query: 154 LARAFAQEPAVLLLDEPTSHLDPGFACXXXXXXXXXXXXXXXXALATFHDINLALLYADR 213 +AR EP V++ DEP S +D + HDI +A ADR Sbjct: 174 IARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTGATIVLITHDIAVARAVADR 233 Query: 214 LVCLKEGRVLASGTPEDVAD 233 + + G+++ G P V + Sbjct: 234 IAVMYLGKIVEVGEPRSVIE 253 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 39.7 bits (91), Expect = 8e-05 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 161 EPAVLLLDEPTSHLDPGFACXXXXXXXXXXXXXXXXALATFHDINLALLYADRLVCLKEG 220 +P +++LDEPTS +DP A L T HD+ LA ADR+ + G Sbjct: 164 KPRLVVLDEPTSGVDP-IASNRIKKILRGLSREGRAILVTTHDLALAEEIADRVTIIHGG 222 Query: 221 RVLASGTP 228 +ASG P Sbjct: 223 STVASGPP 230 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.140 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 213,433 Number of Sequences: 1700 Number of extensions: 7198 Number of successful extensions: 132 Number of sequences better than 1.0e-04: 23 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 96 Number of HSP's gapped (non-prelim): 49 length of query: 266 length of database: 492,079 effective HSP length: 75 effective length of query: 191 effective length of database: 364,579 effective search space: 69634589 effective search space used: 69634589 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719779|ref|YP_003875311.1| transporter [Spirochaeta thermophila DSM 6192] (338 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431314|ref|NP_147689.2| ABC transporter permease [Aeropyru... 103 8e-24 >gi|118431314|ref|NP_147689.2| ABC transporter permease [Aeropyrum pernix K1] Length = 320 Score = 103 bits (256), Expect = 8e-24 Identities = 71/273 (26%), Positives = 106/273 (38%), Gaps = 5/273 (1%) Query: 66 RLPRXXXXXXXXXXXXXXXXXXXXXFRNPMADPYVLGVSAGGALGTATAVFVLPGEWLPL 125 RL R RNP+ DPY+LG+S G +L A A+ +L G PL Sbjct: 46 RLLRTSASIVVGASLAVSGASLQQALRNPLVDPYLLGISTGASL--AVALSLLLGLAGPL 103 Query: 126 SMMVGAFTGGXXXXXXVYGIAGSVRSTATETLLLSGIXXXXXXXXXXXXXXTFVRDRVGS 185 + A GG V A T + L++ G+ D++ Sbjct: 104 GIGSAALAGGLAAFLLVLATARLAGMTGSG-LIIVGVAYSYLFGSLTTLLVLSFPDKLTG 162 Query: 186 LVFWMMGSFSTADWDKXXXXXXXXXXXXXXXXPWVRDLDVLSMGDETAXXXXXXXXXXXX 245 ++W+ GS + D + L+ LS+G+E A Sbjct: 163 ALYWIFGSVAYVDRGILATAAGGLALATLYLAASSKALEALSLGEEAARGLGIGVERLRA 222 Query: 246 XXXXXXXXXXXXXXXXCGPVGFVGLVVPHMVRRLLGARHVRVFTGGLWLGGMVMVAADTL 305 GPVGF+GL P + R L AR + +G + +A+D L Sbjct: 223 GVATASLVAVAASVALAGPVGFIGLTAPWIARLLGAARFQHILVASAPMGAGLALASDIL 282 Query: 306 ARVVLSPSELPVGVVTALVGVPFFVY--LLRWR 336 AR + SP+ELP+ + +L+GVP VY + RWR Sbjct: 283 ARTLASPAELPLTPIASLIGVPILVYAAVERWR 315 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.144 0.469 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 306,676 Number of Sequences: 1700 Number of extensions: 11413 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 1 length of query: 338 length of database: 492,079 effective HSP length: 77 effective length of query: 261 effective length of database: 361,179 effective search space: 94267719 effective search space used: 94267719 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719780|ref|YP_003875312.1| hypothetical protein STHERM_c21080 [Spirochaeta thermophila DSM 6192] (295 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431313|ref|NP_147686.2| ABC transporter substrate-binding ... 123 5e-30 gi|118431555|ref|NP_148097.2| ABC transporter substrate-binding ... 88 2e-19 >gi|118431313|ref|NP_147686.2| ABC transporter substrate-binding protein [Aeropyrum pernix K1] Length = 490 Score = 123 bits (309), Expect = 5e-30 Identities = 94/291 (32%), Positives = 145/291 (49%), Gaps = 25/291 (8%) Query: 26 VRVTDSYGRQILLPEYPDRIVSLAPNITETLFALGKGDLVVGRTDYCDWPAEV-----AG 80 V V D G +++ E P+RIVS+AP+ TETL+ +G D VVG Y D+P E+ AG Sbjct: 165 VTVVDGTGTPVVILERPERIVSMAPSATETLYYVGALDRVVGVDQYSDFPPELNEAKEAG 224 Query: 81 -VPSVGTILQPNIERLVALEPDVVIASSHLSKEVDEK--LRKLGIPVAVFNYPESFEGTY 137 V +G P+IE +++LEPD+V+ + + + K L GIPV + S E Sbjct: 225 EVEVIGGYWNPSIEAILSLEPDLVVGVASVPNHIQVKKVLSAYGIPVILLP-DSSLEDVR 283 Query: 138 ETILQVARVVGAVQKAEDLIDGIEQVVLTVMSAVSGLPRPRVYYVISYGQFGDYTAGKGT 197 E+++ V + G V A + + + V + G+ V+ + G GT Sbjct: 284 ESMMIVGKATGEVVGAYEAVLKFDMAVAAAGLLLEGVEPVETAVVVWPNPL--FVVGGGT 341 Query: 198 FIDTLIQIAGGVNVASDVEGW-QYSAERLLEKDPDIIICSKYYN----TKQGFMKT---- 248 + +I++AGGVNV D +GW Q S E LLE DPD+II + T +GF++ Sbjct: 342 WEHEVIELAGGVNVYGDTQGWPQVSYESLLEADPDVIILMGGHGNSGVTVEGFIEALESQ 401 Query: 249 --PPYTQLTAVKEGRVFEI---DNNLVDRQGPRIGEGLMALARIIHPEAFE 294 ++ AV GR++ + N+ R PR + LA +I P AF+ Sbjct: 402 LGEAAWEIDAVASGRIYVLLDEYNDSFARPSPRTVLSIYVLAVLIQPSAFD 452 >gi|118431555|ref|NP_148097.2| ABC transporter substrate-binding protein [Aeropyrum pernix K1] Length = 274 Score = 88.2 bits (217), Expect = 2e-19 Identities = 68/205 (33%), Positives = 102/205 (49%), Gaps = 11/205 (5%) Query: 34 RQILLPEYPDRIVSLAPNITETLFALGKGDLVVGRTDYCDWPAEVAGVPSVGTILQPNIE 93 R++ +PE P RIVSL+P ITETL+ LG D + G + Y P + P VG+ + N++ Sbjct: 14 REVEVPETPRRIVSLSPAITETLYMLGLEDRIAGVSVYDHKPPKAREKPKVGSYYKVNMK 73 Query: 94 RLVALEPDVVIASSHLSKEVDEKLRKLGIPVAVFNYPESFEGTYETILQVARVVGAVQKA 153 L L PD+++ ++ + + E L + PV P S G + +QV V GA+++A Sbjct: 74 LLEQLNPDLILVTTGAQRRILEDLSR-RYPVYPIPLPVSVSGIIDQAVQVGIVTGALEEA 132 Query: 154 EDLIDGIEQVVLTVMSAVSGLPRP-RVYYVISYGQFGDYTAGKGTFIDTLIQIAG-GVNV 211 L E +L S + G R R+YY + G G TAG T+I +IAG Sbjct: 133 SRL----ETELLDKASKLRGAGRGLRIYYEVYLG--GPVTAGAHTYISDAFRIAGVETPF 186 Query: 212 ASDVEGWQYS--AERLLEKDPDIII 234 S+ W Y ER+ P I+ Sbjct: 187 MSERTTWIYQPPPERINRFKPQFIL 211 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 308,297 Number of Sequences: 1700 Number of extensions: 14104 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 3 length of query: 295 length of database: 492,079 effective HSP length: 76 effective length of query: 219 effective length of database: 362,879 effective search space: 79470501 effective search space used: 79470501 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719781|ref|YP_003875313.1| hypothetical protein STHERM_c21090 [Spirochaeta thermophila DSM 6192] (128 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.134 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 111,686 Number of Sequences: 1700 Number of extensions: 3786 Number of successful extensions: 6 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 128 length of database: 492,079 effective HSP length: 67 effective length of query: 61 effective length of database: 378,179 effective search space: 23068919 effective search space used: 23068919 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719782|ref|YP_003875314.1| hypothetical protein STHERM_c21100 [Spirochaeta thermophila DSM 6192] (78 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.142 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,602 Number of Sequences: 1700 Number of extensions: 3106 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 78 length of database: 492,079 effective HSP length: 48 effective length of query: 30 effective length of database: 410,479 effective search space: 12314370 effective search space used: 12314370 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719783|ref|YP_003875315.1| hypothetical protein STHERM_c21110 [Spirochaeta thermophila DSM 6192] (448 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.141 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 471,968 Number of Sequences: 1700 Number of extensions: 21868 Number of successful extensions: 67 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 0 length of query: 448 length of database: 492,079 effective HSP length: 80 effective length of query: 368 effective length of database: 356,079 effective search space: 131037072 effective search space used: 131037072 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719784|ref|YP_003875316.1| hypothetical protein STHERM_c21120 [Spirochaeta thermophila DSM 6192] (380 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 368,644 Number of Sequences: 1700 Number of extensions: 16126 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 0 length of query: 380 length of database: 492,079 effective HSP length: 78 effective length of query: 302 effective length of database: 359,479 effective search space: 108562658 effective search space used: 108562658 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719785|ref|YP_003875317.1| methyltransferase [Spirochaeta thermophila DSM 6192] (459 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.143 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 500,492 Number of Sequences: 1700 Number of extensions: 23388 Number of successful extensions: 88 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88 Number of HSP's gapped (non-prelim): 0 length of query: 459 length of database: 492,079 effective HSP length: 80 effective length of query: 379 effective length of database: 356,079 effective search space: 134953941 effective search space used: 134953941 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719786|ref|YP_003875318.1| signal transduction histidine kinase [Spirochaeta thermophila DSM 6192] (211 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 211,275 Number of Sequences: 1700 Number of extensions: 8712 Number of successful extensions: 24 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 0 length of query: 211 length of database: 492,079 effective HSP length: 73 effective length of query: 138 effective length of database: 367,979 effective search space: 50781102 effective search space used: 50781102 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719787|ref|YP_003875319.1| hypothetical protein STHERM_c21150 [Spirochaeta thermophila DSM 6192] (222 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 180,894 Number of Sequences: 1700 Number of extensions: 6125 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 222 length of database: 492,079 effective HSP length: 73 effective length of query: 149 effective length of database: 367,979 effective search space: 54828871 effective search space used: 54828871 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719788|ref|YP_003875320.1| 30S ribosomal protein S9 [Spirochaeta thermophila DSM 6192] (131 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601601|ref|NP_148141.1| 30S ribosomal protein S9 [Aeropyrum... 78 9e-17 >gi|14601601|ref|NP_148141.1| 30S ribosomal protein S9 [Aeropyrum pernix K1] Length = 157 Score = 77.8 bits (190), Expect = 9e-17 Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 24/153 (15%) Query: 1 MATINLAVATGRRKTSVARVFLREGDGTITINGKTLEEYFPREDHRIMVRQPLIVTGTEG 60 MA + ++TG+RK ++AR +R G G + ING LE Y P E RI + +PL++ G EG Sbjct: 7 MAVERIVISTGKRKRAIARAVIRPGRGRVWINGVPLEIY-PIEMARIKMMEPLLIAG-EG 64 Query: 61 KFSLY---ITVKGGGISGQAGAIRHGIARALSAY---DETNTPVLRANKFLTR------- 107 SL + V+GGG+ GQA A+R IAR L + +E++ + R ++R Sbjct: 65 VRSLVDIRVRVEGGGVMGQADAVRMAIARGLVEFFRCEESDDELCRMMDKISRDLRTAFL 124 Query: 108 ---------DPRMVERKKYGHKKARRSFQFSKR 131 DPR E +KY ARR +Q S R Sbjct: 125 EHDRTMLVGDPRRTEPEKYMRYSARRRWQKSYR 157 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 126,055 Number of Sequences: 1700 Number of extensions: 5238 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 1 length of query: 131 length of database: 492,079 effective HSP length: 68 effective length of query: 63 effective length of database: 376,479 effective search space: 23718177 effective search space used: 23718177 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719789|ref|YP_003875321.1| 50S ribosomal protein L13 [Spirochaeta thermophila DSM 6192] (141 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601600|ref|NP_148140.1| 50S ribosomal protein L13 [Aeropyru... 50 2e-08 >gi|14601600|ref|NP_148140.1| 50S ribosomal protein L13 [Aeropyrum pernix K1] Length = 155 Score = 50.4 bits (119), Expect = 2e-08 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 18/115 (15%) Query: 17 LIDAKGKTLGRLATQVAAILRGKHKPYYVPHQAVGDYVIIVNADKIVVSGNKETKKLYYR 76 ++D G +GRLA+ VA +L G V +VNA+KIV+SG+ YR Sbjct: 12 VVDGSGMIMGRLASVVAKLL------------LAGWRVNVVNAEKIVLSGDPRMVVESYR 59 Query: 77 HTGYPGGLKVATFSQVMEKHPTYP---LEKAIKGMLPKNRL-GRALFRRVKIYAG 127 T G+K + K P P + A++GMLPKN+ GR R+++Y G Sbjct: 60 TTVL--GVKSHFSHKWRPKRPRTPQRLFKHAVRGMLPKNKARGRRALARLRVYVG 112 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 147,359 Number of Sequences: 1700 Number of extensions: 6143 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 1 length of query: 141 length of database: 492,079 effective HSP length: 69 effective length of query: 72 effective length of database: 374,779 effective search space: 26984088 effective search space used: 26984088 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719790|ref|YP_003875322.1| hypothetical protein STHERM_c21180 [Spirochaeta thermophila DSM 6192] (76 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.136 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,013 Number of Sequences: 1700 Number of extensions: 717 Number of successful extensions: 1 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 76 length of database: 492,079 effective HSP length: 46 effective length of query: 30 effective length of database: 413,879 effective search space: 12416370 effective search space used: 12416370 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719791|ref|YP_003875323.1| hypothetical protein STHERM_c21190 [Spirochaeta thermophila DSM 6192] (113 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.140 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,665 Number of Sequences: 1700 Number of extensions: 2935 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 0 length of query: 113 length of database: 492,079 effective HSP length: 66 effective length of query: 47 effective length of database: 379,879 effective search space: 17854313 effective search space used: 17854313 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719792|ref|YP_003875324.1| hypothetical protein STHERM_c21200 [Spirochaeta thermophila DSM 6192] (281 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 252,690 Number of Sequences: 1700 Number of extensions: 9828 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 281 length of database: 492,079 effective HSP length: 76 effective length of query: 205 effective length of database: 362,879 effective search space: 74390195 effective search space used: 74390195 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719793|ref|YP_003875325.1| DNA helicase [Spirochaeta thermophila DSM 6192] (683 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 724,379 Number of Sequences: 1700 Number of extensions: 34192 Number of successful extensions: 100 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100 Number of HSP's gapped (non-prelim): 0 length of query: 683 length of database: 492,079 effective HSP length: 83 effective length of query: 600 effective length of database: 350,979 effective search space: 210587400 effective search space used: 210587400 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719794|ref|YP_003875326.1| hypothetical protein STHERM_c21220 [Spirochaeta thermophila DSM 6192] (122 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 120,304 Number of Sequences: 1700 Number of extensions: 5252 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 122 length of database: 492,079 effective HSP length: 67 effective length of query: 55 effective length of database: 378,179 effective search space: 20799845 effective search space used: 20799845 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719795|ref|YP_003875327.1| hypothetical protein STHERM_c21230 [Spirochaeta thermophila DSM 6192] (442 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431496|ref|NP_148004.2| MiaB-like protein [Aeropyrum perni... 137 5e-34 >gi|118431496|ref|NP_148004.2| MiaB-like protein [Aeropyrum pernix K1] Length = 450 Score = 137 bits (345), Expect = 5e-34 Identities = 120/438 (27%), Positives = 195/438 (44%), Gaps = 20/438 (4%) Query: 3 SFYLEPLGCAKNQVDAEVIISLLLDAGWELVEDPAEADLIVVNTCGFIRDAKEESLETAF 62 ++YLE GC+ ++ DA ++ S L +AG+ V P +AD+I+VNTC D ++ E Sbjct: 19 TYYLEVYGCSLSEFDALIMASRLEEAGYRRVARPEDADVILVNTCAVRLDTEQRIAERLE 78 Query: 63 LFRERFPDKRILLTGCLAQRYGRELGEEMEEVDGVLGNADLSAVVDAARQVMEGRRVVWT 122 R + PD++ ++ GCL + + + E +L + V+DA + GRR+V Sbjct: 79 KLRLQLPDRKYVVAGCLVKARPGLVARLVPEA-SLLAPQAVERVLDAVDALESGRRLV-V 136 Query: 123 PQARRPAHVRRKRLLSFPGSAYVKVAEGCDNRCSYCAIPLIRGRFWSRPEEEIVQEVKGL 182 RR +L V + EGC CS+C + R + S IV+ V+ Sbjct: 137 LDGRRDTR-SMPQLPITDAVVTVMIQEGCLGDCSFCITKVARRQVRSYSPRVIVERVREA 195 Query: 183 LGEGIREVNLVAQDLGSYGKERGG--SLFGLLERILE-LQGDFWVRLLYIHPDHFPWEIL 239 + +G RE+ L D+ YG + G +L L+ ILE ++GD+ +R+ + PD + Sbjct: 196 VEKGAREIRLTGTDVAVYGVDLPGKPNLADLVAAILEKVEGDYRIRVGMMTPDQVEPYLD 255 Query: 240 RLMG--QDRRLLPYVDLPFQHVSARLLRRMGRRGDAERYAELVHALRDSLPDVVVRSTFL 297 L+ +D R+ Y LP Q +L+ M R Y + ++ PD ++ + + Sbjct: 256 SLLDVYRDERVYKYFHLPVQSGDDEVLKIMKRNYTVSEYKAIHRRIKSRFPDAMIATDII 315 Query: 298 LGFPGEEEEDLDALARFLEEVRLDWAGFFVYSPEEGTPAEAWHREEGRKAGVRLERAERR 357 +G PGE E R +EE+R + YS T A + E V+ ER+ Sbjct: 316 VGHPGETWEAFWNTVRLVEELRFEKVHLAQYSLRPHTEAASM---EQVPDSVKKERSRIL 372 Query: 358 KEDLERLQEGITGERLERWVGRECEVLVEERIEGEDMALARSAFQAPEVDGLVVVHGEGL 417 + + + I G +VGR LV ER E R P +++ E Sbjct: 373 GKIVAEIGLEINGS----YVGRRVRALVTERSWREGSMTGRLDNYTP-----IILPYEER 423 Query: 418 EPGRVVRARVLKRNGIDL 435 GR V A V + DL Sbjct: 424 AMGRWVYAEVEEATFFDL 441 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 515,107 Number of Sequences: 1700 Number of extensions: 26588 Number of successful extensions: 108 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105 Number of HSP's gapped (non-prelim): 1 length of query: 442 length of database: 492,079 effective HSP length: 80 effective length of query: 362 effective length of database: 356,079 effective search space: 128900598 effective search space used: 128900598 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719796|ref|YP_003875328.1| transcriptional regulator, XRE family [Spirochaeta thermophila DSM 6192] (375 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 388,754 Number of Sequences: 1700 Number of extensions: 17787 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 0 length of query: 375 length of database: 492,079 effective HSP length: 78 effective length of query: 297 effective length of database: 359,479 effective search space: 106765263 effective search space used: 106765263 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719797|ref|YP_003875329.1| hypothetical protein STHERM_c21250 [Spirochaeta thermophila DSM 6192] (230 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 238,428 Number of Sequences: 1700 Number of extensions: 9618 Number of successful extensions: 27 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 0 length of query: 230 length of database: 492,079 effective HSP length: 74 effective length of query: 156 effective length of database: 366,279 effective search space: 57139524 effective search space used: 57139524 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719798|ref|YP_003875330.1| hypothetical protein STHERM_c21260 [Spirochaeta thermophila DSM 6192] (278 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 276,124 Number of Sequences: 1700 Number of extensions: 12812 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 278 length of database: 492,079 effective HSP length: 76 effective length of query: 202 effective length of database: 362,879 effective search space: 73301558 effective search space used: 73301558 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719799|ref|YP_003875331.1| hypothetical protein STHERM_c21270 [Spirochaeta thermophila DSM 6192] (230 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431022|ref|NP_147201.2| uridylate kinase [Aeropyrum pernix... 83 7e-18 >gi|118431022|ref|NP_147201.2| uridylate kinase [Aeropyrum pernix K1] Length = 225 Score = 82.8 bits (203), Expect = 7e-18 Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 14/232 (6%) Query: 3 KTIVMSLGGSIVAPDGVDAEFLSIFRHHITSFLEEHDXXXXXXXXXXXXPARRYQQAFRT 62 +++V+ + GS+V P +D +L+ R + ++ AR Y R Sbjct: 2 ESVVVKISGSLVHPPRLD--YLTRLRDVLWGLVD--GGFRVAVVVGGGGLARSYIDVLRR 57 Query: 63 ITGSDDHALLDWIGIAATRLNAELLRALFHPLCADPVVTD--PTAEIPFTGRILVASGWK 120 S+ ALLD +GI ++RLNA LL L +P + E+ TG I V+ G++ Sbjct: 58 AGVSE--ALLDEMGIESSRLNASLLAKLLYPRSQPYPLASLREVLEVFMTGLIPVSGGFQ 115 Query: 121 PGFSTDFDAVLLAERFGARTLLN-LSNIAMVYSDDPRTNPDATPLPRLSWKEFRAMV--G 177 PG ST+ A ++AE GARTLLN L + VYSD+P T P A L RL++++ ++ Sbjct: 116 PGQSTNAVAAVIAEALGARTLLNCLKGVEGVYSDEPST-PGARLLRRLTYRQLEDILVKV 174 Query: 178 DEWTPGKNVPFDPVAARKAHEGGLSVIIAAGKDIENLSAILEGRPFRGTVIE 229 G +D VA A GL ++ D N+ L+G +G+++E Sbjct: 175 SSQRAGSYTLWDMVALSVARRSGLRIVFFDCSDPANIWGALKGE--KGSIVE 224 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 230,536 Number of Sequences: 1700 Number of extensions: 9364 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 1 length of query: 230 length of database: 492,079 effective HSP length: 74 effective length of query: 156 effective length of database: 366,279 effective search space: 57139524 effective search space used: 57139524 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719800|ref|YP_003875332.1| radical SAM domain-containing protein [Spirochaeta thermophila DSM 6192] (351 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431498|ref|NP_148007.2| PflX-like protein [Aeropyrum perni... 70 6e-14 >gi|118431498|ref|NP_148007.2| PflX-like protein [Aeropyrum pernix K1] Length = 365 Score = 70.5 bits (171), Expect = 6e-14 Identities = 75/279 (26%), Positives = 114/279 (40%), Gaps = 28/279 (10%) Query: 39 CELCPXX-XXXXXXXXXGFCGEGVKMRLAACVYHRGEEPPLVXXXXXXXXXXXXXXXXXX 97 CELC G C ++ + + H GEE PLV Sbjct: 101 CELCERRCRVERAKSRRGACRLAWEVYVHSAFLHLGEEAPLVPSGTIFYGGCNFTCVFC- 159 Query: 98 XXQNHQISSGGVGWE------VSEDEFASLCLEFQEGGASCINLVTATHFIPSVVEGLSR 151 QN +S W+ V+ + E GA IN V +PS+ + Sbjct: 160 --QNWDVSQ----WKARDAHIVTPRRLGEIQDRLAEAGARNINHVGGDP-VPSLHVIVES 212 Query: 152 ARDQGLRLPVVWNSSGYEREESLELLFPHVSVFLPDLKTLDRGIAVDVFGSPDYPEVAER 211 + P +WNS+ Y E+L++L + ++LPDLK + A+ + P Y EV R Sbjct: 213 MKYASHLKPQLWNSNMYMTLEALDILVDLIDIWLPDLKFGNDRCAMRLSAVPRYWEVTTR 272 Query: 212 AVRAMIRRRPLVWDGDRLLQGVIVRHLVLPGALE-ATERVLAWWKEHAEGRAILSLMVQY 270 + GD +I+RHLV+PG +E T+ VL W E+ R ++++M QY Sbjct: 273 NILLAAEH------GD-----MIIRHLVMPGHVECCTKPVLRWIAENLGDRVLVNIMDQY 321 Query: 271 DPAGKATDTGASFPLPLTRRLTVREYEEVLRMLEEYEVD 309 P +P + RR + RE EE R E+ +D Sbjct: 322 HPDNLVLRMPHKWP-EIARRPSRREIEEAWRYAEQLGLD 359 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 352,627 Number of Sequences: 1700 Number of extensions: 15390 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 1 length of query: 351 length of database: 492,079 effective HSP length: 78 effective length of query: 273 effective length of database: 359,479 effective search space: 98137767 effective search space used: 98137767 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719801|ref|YP_003875333.1| hypothetical protein STHERM_c21280 [Spirochaeta thermophila DSM 6192] (323 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431768|ref|NP_148439.2| hypothetical protein APE_2177.1 [A... 84 4e-18 >gi|118431768|ref|NP_148439.2| hypothetical protein APE_2177.1 [Aeropyrum pernix K1] Length = 171 Score = 84.3 bits (207), Expect = 4e-18 Identities = 52/143 (36%), Positives = 73/143 (51%), Gaps = 17/143 (11%) Query: 170 RFVLDVHLGKLARLLRICGFDSLYERDAEDLDIVRRAHEERRIILTRDRAL--LMRKEVT 227 RF++D LG LA+ LR+ G+D+LY R D I+R A RII+TRDR L RK Sbjct: 13 RFIVDSMLGSLAKWLRLMGYDTLYSRTYSDWQILRIAKSSGRIIVTRDRWLHSKARKMGL 72 Query: 228 HGYCVRSDIPRTQLEEVIRRFHLERNVQP-FSRCPLCNTPLSPV--------------HP 272 + S +L E+ + L+ ++P SRCP+CN L PV Sbjct: 73 KSIYIESLSTEERLAELSAKAGLDLRLEPERSRCPICNGVLEPVDKEAVRDRVPEATYRV 132 Query: 273 AEAPVTCPSCGKTYWKGSHYRNL 295 + C CGK YW+G+H+RN+ Sbjct: 133 VDKFYVCTRCGKVYWEGAHWRNM 155 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 332,405 Number of Sequences: 1700 Number of extensions: 14915 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 1 length of query: 323 length of database: 492,079 effective HSP length: 77 effective length of query: 246 effective length of database: 361,179 effective search space: 88850034 effective search space used: 88850034 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719802|ref|YP_003875334.1| hypothetical protein STHERM_c21300 [Spirochaeta thermophila DSM 6192] (63 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.141 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,817 Number of Sequences: 1700 Number of extensions: 840 Number of successful extensions: 2 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 63 length of database: 492,079 effective HSP length: 35 effective length of query: 28 effective length of database: 432,579 effective search space: 12112212 effective search space used: 12112212 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719803|ref|YP_003875335.1| hypothetical protein STHERM_c21310 [Spirochaeta thermophila DSM 6192] (186 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 153,904 Number of Sequences: 1700 Number of extensions: 6180 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 186 length of database: 492,079 effective HSP length: 72 effective length of query: 114 effective length of database: 369,679 effective search space: 42143406 effective search space used: 42143406 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719804|ref|YP_003875336.1| hypothetical protein STHERM_c21330 [Spirochaeta thermophila DSM 6192] (617 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118430839|ref|NP_146900.2| amino acid transporter [Aeropyrum ... 74 1e-14 >gi|118430839|ref|NP_146900.2| amino acid transporter [Aeropyrum pernix K1] Length = 535 Score = 73.9 bits (180), Expect = 1e-14 Identities = 88/409 (21%), Positives = 162/409 (39%), Gaps = 28/409 (6%) Query: 1 MSLKKGLSTL---EVFSIATGAMISSGLFVLPSIIYREAGVXXXXXXXXXXXXXXPAVFS 57 MS +KG L EVFSI G MI G+F + AG +S Sbjct: 1 MSARKGTEKLGFWEVFSIGVGGMIGGGIFATLGLSLELAGAAAPLAFLLAGSVALITSYS 60 Query: 58 QLELSTAMPKAGGNYLAVERILGTAAGVVAGITNWLAISLKAGFALI------GIGTFMT 111 +LS+ P GG + R G V++G N I L A + ++ G++ Sbjct: 61 YAKLSSRYPSEGGTIEFIVRAYGD--NVISGGLN---IMLLASYIVMISLYAHAFGSYGA 115 Query: 112 LLFPHLTEQEIKLIAMGACIFFTLLNIVSVESSGKAQVIMVXXXXXXXXXXXXXXXRAMD 171 + + + + T++N++ SG+ ++ +V +D Sbjct: 116 SMINCCPREAYIALVVFVIAGLTVVNMLGAIMSGRVELGLVIFKLLVLILVAVVSMPLVD 175 Query: 172 FSNFVKAPAGDIHRILGAAGTVVISYGGITKVASIAEEVKDPGKNLVRGIMLSFWVTIAF 231 ++ I I+ + ++Y G VA+ A++V+D L +G+ S I Sbjct: 176 WNRLGVREWPSILSIVAGGMIIFLAYEGFELVANTAKDVRDT-TTLRKGLYASVVTVIIV 234 Query: 232 YALAVLVTQGLLSHE--ELTSTYTPISTAAGKLVGPVGVWLTGLSALLAFITTANAGIMT 289 Y L +V G L + + Y ++ ++G +G L +AL + + NA + Sbjct: 235 YVLIAIVAAGTLDPDTVRIARDYA-LAVLVEPVLGKIGFTLVVAAALASTSSAINATLYG 293 Query: 290 ASRNPLSMARDGLLPSFFGRVSGKTGTPIPSILTTSAVILAVVAGLSIENFAKVASLFML 349 ++R +A+ G P GR + +++ ++LA+ A S+E + S L Sbjct: 294 SARVSYIIAKYGEAPQLLGRHIWRGAYEGLLVISILGLLLALYA--SLEQISTAGSGGFL 351 Query: 350 FTYILTNLSVIVMRYAGLVNYRPTFRSPFFPVL-HIMSIVVYAILIVDM 397 + NL+ +R R T +P ++ I+++ AIL+ M Sbjct: 352 IIFAAVNLAAYKLR-------RETGANPLISLVGFILNLTSLAILVYQM 393 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 520,687 Number of Sequences: 1700 Number of extensions: 20527 Number of successful extensions: 101 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 100 Number of HSP's gapped (non-prelim): 1 length of query: 617 length of database: 492,079 effective HSP length: 82 effective length of query: 535 effective length of database: 352,679 effective search space: 188683265 effective search space used: 188683265 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719805|ref|YP_003875337.1| hypothetical protein STHERM_c21340 [Spirochaeta thermophila DSM 6192] (226 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 223,636 Number of Sequences: 1700 Number of extensions: 9329 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 226 length of database: 492,079 effective HSP length: 74 effective length of query: 152 effective length of database: 366,279 effective search space: 55674408 effective search space used: 55674408 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719806|ref|YP_003875338.1| deoxycytidine triphosphate deaminase [Spirochaeta thermophila DSM 6192] (175 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431001|ref|NP_147155.2| deoxycytidine triphosphate deamina... 45 8e-07 >gi|118431001|ref|NP_147155.2| deoxycytidine triphosphate deaminase [Aeropyrum pernix K1] Length = 178 Score = 45.4 bits (106), Expect = 8e-07 Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 11/178 (6%) Query: 1 MILSGKEIEKRLG-RDIFIEPFSERQLNPNSYNLRLHNELLVY--TTPVLDMRRP-NPTE 56 MILS ++I L D+ +EP S + N +LRL + + VLD R P +P E Sbjct: 1 MILSDRDIRALLAIGDLVVEPLSGDTVRENGLDLRLGRGFCRFKRSDRVLDPRAPGSPGE 60 Query: 57 RLVIXXXXXXXXX-XXXXXXXTVEYTRTYNLVPMLEG-RSSVGRLGLFIHVTAGFGDVGF 114 T EY R V L RS+ R G++I T D GF Sbjct: 61 FYECGEGDEIIVGPGEHMLLHTQEYIRLPGYVAGLVNLRSTWARTGIYIPATVV--DAGF 118 Query: 115 EGYWTLEMFCIQ-PIKIYPGVEICQIYYHTIEGD-YEPYRSRKYQKNTGIQPSLLYTE 170 EG T+E+ P+K+YPG + ++ PYR R YQ G++ L+ + Sbjct: 119 EGQLTIEVVGSGFPVKLYPGDRFLHLVLVKLQSPAMNPYRGR-YQGQRGVRLPKLFAK 175 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.143 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 178,931 Number of Sequences: 1700 Number of extensions: 7635 Number of successful extensions: 13 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 1 length of query: 175 length of database: 492,079 effective HSP length: 71 effective length of query: 104 effective length of database: 371,379 effective search space: 38623416 effective search space used: 38623416 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719807|ref|YP_003875339.1| hypothetical protein STHERM_c21360 [Spirochaeta thermophila DSM 6192] (532 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 448,436 Number of Sequences: 1700 Number of extensions: 17340 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 0 length of query: 532 length of database: 492,079 effective HSP length: 81 effective length of query: 451 effective length of database: 354,379 effective search space: 159824929 effective search space used: 159824929 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719808|ref|YP_003875340.1| pseudouridine synthase [Spirochaeta thermophila DSM 6192] (256 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 277,181 Number of Sequences: 1700 Number of extensions: 12179 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 256 length of database: 492,079 effective HSP length: 75 effective length of query: 181 effective length of database: 364,579 effective search space: 65988799 effective search space used: 65988799 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719809|ref|YP_003875341.1| hypothetical protein STHERM_c21380 [Spirochaeta thermophila DSM 6192] (135 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 137,783 Number of Sequences: 1700 Number of extensions: 5609 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 135 length of database: 492,079 effective HSP length: 68 effective length of query: 67 effective length of database: 376,479 effective search space: 25224093 effective search space used: 25224093 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719810|ref|YP_003875342.1| hypothetical protein STHERM_c21390 [Spirochaeta thermophila DSM 6192] (237 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.137 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 222,078 Number of Sequences: 1700 Number of extensions: 8584 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 0 length of query: 237 length of database: 492,079 effective HSP length: 74 effective length of query: 163 effective length of database: 366,279 effective search space: 59703477 effective search space used: 59703477 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719811|ref|YP_003875343.1| hypothetical protein STHERM_c21410 [Spirochaeta thermophila DSM 6192] (520 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 497,397 Number of Sequences: 1700 Number of extensions: 21385 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 0 length of query: 520 length of database: 492,079 effective HSP length: 81 effective length of query: 439 effective length of database: 354,379 effective search space: 155572381 effective search space used: 155572381 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719812|ref|YP_003875344.1| hypothetical protein STHERM_c21420 [Spirochaeta thermophila DSM 6192] (69 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.341 0.153 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,831 Number of Sequences: 1700 Number of extensions: 2338 Number of successful extensions: 10 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 69 length of database: 492,079 effective HSP length: 40 effective length of query: 29 effective length of database: 424,079 effective search space: 12298291 effective search space used: 12298291 T: 11 A: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719813|ref|YP_003875345.1| signal peptidase II [Spirochaeta thermophila DSM 6192] (178 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.145 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 156,606 Number of Sequences: 1700 Number of extensions: 5971 Number of successful extensions: 23 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 0 length of query: 178 length of database: 492,079 effective HSP length: 71 effective length of query: 107 effective length of database: 371,379 effective search space: 39737553 effective search space used: 39737553 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719814|ref|YP_003875346.1| hypothetical protein STHERM_c21440 [Spirochaeta thermophila DSM 6192] (254 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.141 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 246,112 Number of Sequences: 1700 Number of extensions: 10043 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 0 length of query: 254 length of database: 492,079 effective HSP length: 75 effective length of query: 179 effective length of database: 364,579 effective search space: 65259641 effective search space used: 65259641 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719815|ref|YP_003875347.1| hypothetical protein STHERM_c21450 [Spirochaeta thermophila DSM 6192] (365 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.140 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 416,834 Number of Sequences: 1700 Number of extensions: 20145 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 0 length of query: 365 length of database: 492,079 effective HSP length: 78 effective length of query: 287 effective length of database: 359,479 effective search space: 103170473 effective search space used: 103170473 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719816|ref|YP_003875348.1| hypothetical protein STHERM_c21460 [Spirochaeta thermophila DSM 6192] (224 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.143 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 256,897 Number of Sequences: 1700 Number of extensions: 11986 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 224 length of database: 492,079 effective HSP length: 74 effective length of query: 150 effective length of database: 366,279 effective search space: 54941850 effective search space used: 54941850 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719817|ref|YP_003875349.1| hypothetical protein STHERM_c21470 [Spirochaeta thermophila DSM 6192] (121 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.140 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 124,020 Number of Sequences: 1700 Number of extensions: 4815 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 121 length of database: 492,079 effective HSP length: 67 effective length of query: 54 effective length of database: 378,179 effective search space: 20421666 effective search space used: 20421666 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719818|ref|YP_003875350.1| HDIG domain-containing protein [Spirochaeta thermophila DSM 6192] (196 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 208,276 Number of Sequences: 1700 Number of extensions: 9001 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 196 length of database: 492,079 effective HSP length: 72 effective length of query: 124 effective length of database: 369,679 effective search space: 45840196 effective search space used: 45840196 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719819|ref|YP_003875351.1| hypothetical protein STHERM_c21490 [Spirochaeta thermophila DSM 6192] (250 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 224,148 Number of Sequences: 1700 Number of extensions: 9177 Number of successful extensions: 21 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 0 length of query: 250 length of database: 492,079 effective HSP length: 75 effective length of query: 175 effective length of database: 364,579 effective search space: 63801325 effective search space used: 63801325 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719820|ref|YP_003875352.1| integral membrane sensor signal transduction histidine kinase [Spirochaeta thermophila DSM 6192] (451 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 326,463 Number of Sequences: 1700 Number of extensions: 11240 Number of successful extensions: 50 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 0 length of query: 451 length of database: 492,079 effective HSP length: 80 effective length of query: 371 effective length of database: 356,079 effective search space: 132105309 effective search space used: 132105309 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719821|ref|YP_003875353.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (229 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.141 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 208,004 Number of Sequences: 1700 Number of extensions: 8119 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 229 length of database: 492,079 effective HSP length: 74 effective length of query: 155 effective length of database: 366,279 effective search space: 56773245 effective search space used: 56773245 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719822|ref|YP_003875354.1| hypothetical protein STHERM_c21520 [Spirochaeta thermophila DSM 6192] (150 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 156,248 Number of Sequences: 1700 Number of extensions: 6416 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 150 length of database: 492,079 effective HSP length: 69 effective length of query: 81 effective length of database: 374,779 effective search space: 30357099 effective search space used: 30357099 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719823|ref|YP_003875355.1| 3-oxoacyl-ACP synthase [Spirochaeta thermophila DSM 6192] (413 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 446,464 Number of Sequences: 1700 Number of extensions: 20979 Number of successful extensions: 73 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73 Number of HSP's gapped (non-prelim): 0 length of query: 413 length of database: 492,079 effective HSP length: 79 effective length of query: 334 effective length of database: 357,779 effective search space: 119498186 effective search space used: 119498186 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719824|ref|YP_003875356.1| 3-oxoacyl-ACP reductase [Spirochaeta thermophila DSM 6192] (247 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum... 133 5e-33 gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] 107 3e-25 >gi|118431905|ref|NP_148655.2| 3-oxoacyl-ACP reductase [Aeropyrum pernix K1] Length = 250 Score = 133 bits (334), Expect = 5e-33 Identities = 90/245 (36%), Positives = 137/245 (55%), Gaps = 11/245 (4%) Query: 8 ALVTGGSRGIGARIVRLFLQEGASVWFVDLNPSEHMEEFQSLAAERGTTVAYR-QCNVAD 66 ALVTGGSRGIG V F +EG SV + ++ E+ A G+ AY + +V D Sbjct: 6 ALVTGGSRGIGRATVLRFAREGWSVVIAYKSRADLAEKTAEEARRLGSPEAYTVRVDVGD 65 Query: 67 EEQVDKV---VGEILTESGGIDVLVNNAGITRDGLIFRMSIDDWESVLRVNLTSAFLFSR 123 + V ++ VGE++ ++VLVN AG+ + G I SI +WE LRVNLT +L ++ Sbjct: 66 PDSVTEMSSRVGELIPH---LNVLVNAAGVLQLGGIEETSISEWEETLRVNLTGVYLVTK 122 Query: 124 RIAHAMARQREGXXXXXXXXVGVHGNA-GQCNYSASKAGLLGLTKSLAQEVASRNVRVNA 182 + + + + G GN YSASKAG++GLTK LA ++A +RVNA Sbjct: 123 LLLPLLRKAKWASIVNVASIAGETGNVVAGVAYSASKAGVIGLTKRLAVQLAGYGIRVNA 182 Query: 183 IAPGFIDTPMTQKLPD--KVKDALLSRIPMGRLGQPEEVAKICLFLASDLASY-VTGQVI 239 +AP F++T MT+ D + ++ + S P+ + +PE+VA+ LFLA S +TG V+ Sbjct: 183 VAPSFVETDMTRSFLDTPEKRERIASLHPLKIILKPEDVAEAILFLADPRRSRGITGHVL 242 Query: 240 GVDGG 244 ++ G Sbjct: 243 SINAG 247 >gi|14601066|ref|NP_147592.1| dehydrogenase [Aeropyrum pernix K1] Length = 260 Score = 107 bits (267), Expect = 3e-25 Identities = 77/258 (29%), Positives = 127/258 (49%), Gaps = 21/258 (8%) Query: 3 LKDKKALVTGGSRGIGARIVRLFLQEGASVWFVDLNPSEHMEEFQSLAAERGTTVAYRQC 62 ++ K A+VT GS G+G + GA + S + E+ ++ A+ + V+ Q Sbjct: 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLF----SRNREKLEAAASRIASLVSGAQV 60 Query: 63 NVA-----DEEQVDKVVGEILTESGGIDVLVNNAGITRDGLIFRMSIDDWESVLRVNLTS 117 ++ + +D++ E + GG D+LV + G R G + ++DW+ R+ S Sbjct: 61 DIVAGDIREPGDIDRLF-EKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARS 119 Query: 118 AFLFSRRIAHAMARQREGXXXXXXXXVGVHGNAGQCNYSASKAGLLGLTKSLAQEVASRN 177 A RR A M + G + + + ++G+ ++LA E+A Sbjct: 120 AVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHG 179 Query: 178 VRVNAIAPGFIDTPMTQKLPDK--------VKDAL---LSRIPMGRLGQPEEVAKICLFL 226 V VNA+ P I T + L ++ V++AL SRIPMGR+G+PEE+A + FL Sbjct: 180 VTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIPMGRVGKPEELASVVAFL 239 Query: 227 ASDLASYVTGQVIGVDGG 244 AS+ AS++TG VI VDGG Sbjct: 240 ASEKASFITGAVIPVDGG 257 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 238,691 Number of Sequences: 1700 Number of extensions: 9577 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 2 length of query: 247 length of database: 492,079 effective HSP length: 75 effective length of query: 172 effective length of database: 364,579 effective search space: 62707588 effective search space used: 62707588 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719825|ref|YP_003875357.1| hypothetical protein STHERM_c21550 [Spirochaeta thermophila DSM 6192] (310 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 315,557 Number of Sequences: 1700 Number of extensions: 14147 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 0 length of query: 310 length of database: 492,079 effective HSP length: 77 effective length of query: 233 effective length of database: 361,179 effective search space: 84154707 effective search space used: 84154707 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719826|ref|YP_003875358.1| hypothetical protein STHERM_c21560 [Spirochaeta thermophila DSM 6192] (71 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.331 0.146 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,600 Number of Sequences: 1700 Number of extensions: 1339 Number of successful extensions: 4 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 71 length of database: 492,079 effective HSP length: 42 effective length of query: 29 effective length of database: 420,679 effective search space: 12199691 effective search space used: 12199691 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719827|ref|YP_003875359.1| pyruvate carboxylase, beta chain [Spirochaeta thermophila DSM 6192] (599 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 628,587 Number of Sequences: 1700 Number of extensions: 29907 Number of successful extensions: 96 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96 Number of HSP's gapped (non-prelim): 0 length of query: 599 length of database: 492,079 effective HSP length: 82 effective length of query: 517 effective length of database: 352,679 effective search space: 182335043 effective search space used: 182335043 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719828|ref|YP_003875360.1| oxaloacetate decarboxylase subunit beta [Spirochaeta thermophila DSM 6192] (408 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.143 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 371,967 Number of Sequences: 1700 Number of extensions: 16360 Number of successful extensions: 79 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79 Number of HSP's gapped (non-prelim): 0 length of query: 408 length of database: 492,079 effective HSP length: 79 effective length of query: 329 effective length of database: 357,779 effective search space: 117709291 effective search space used: 117709291 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719829|ref|YP_003875361.1| hypothetical protein STHERM_c21590 [Spirochaeta thermophila DSM 6192] (149 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 164,590 Number of Sequences: 1700 Number of extensions: 7202 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 149 length of database: 492,079 effective HSP length: 69 effective length of query: 80 effective length of database: 374,779 effective search space: 29982320 effective search space used: 29982320 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719830|ref|YP_003875362.1| phosphoenolpyruvate carboxykinase [Spirochaeta thermophila DSM 6192] (654 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 661,830 Number of Sequences: 1700 Number of extensions: 29938 Number of successful extensions: 107 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107 Number of HSP's gapped (non-prelim): 0 length of query: 654 length of database: 492,079 effective HSP length: 83 effective length of query: 571 effective length of database: 350,979 effective search space: 200409009 effective search space used: 200409009 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719831|ref|YP_003875363.1| 5,10-methylenetetrahydrofolate reductase [Spirochaeta thermophila DSM 6192] (294 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.141 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 299,372 Number of Sequences: 1700 Number of extensions: 12785 Number of successful extensions: 61 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61 Number of HSP's gapped (non-prelim): 0 length of query: 294 length of database: 492,079 effective HSP length: 76 effective length of query: 218 effective length of database: 362,879 effective search space: 79107622 effective search space used: 79107622 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719832|ref|YP_003875364.1| hypothetical protein STHERM_c21620 [Spirochaeta thermophila DSM 6192] (71 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.139 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,618 Number of Sequences: 1700 Number of extensions: 2239 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 71 length of database: 492,079 effective HSP length: 42 effective length of query: 29 effective length of database: 420,679 effective search space: 12199691 effective search space used: 12199691 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719833|ref|YP_003875365.1| xylose-proton symporter [Spirochaeta thermophila DSM 6192] (455 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.328 0.142 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 441,635 Number of Sequences: 1700 Number of extensions: 18636 Number of successful extensions: 71 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71 Number of HSP's gapped (non-prelim): 0 length of query: 455 length of database: 492,079 effective HSP length: 80 effective length of query: 375 effective length of database: 356,079 effective search space: 133529625 effective search space used: 133529625 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719834|ref|YP_003875366.1| hypothetical protein STHERM_c21640 [Spirochaeta thermophila DSM 6192] (425 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.140 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 417,340 Number of Sequences: 1700 Number of extensions: 18441 Number of successful extensions: 65 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65 Number of HSP's gapped (non-prelim): 0 length of query: 425 length of database: 492,079 effective HSP length: 79 effective length of query: 346 effective length of database: 357,779 effective search space: 123791534 effective search space used: 123791534 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719835|ref|YP_003875367.1| hypothetical protein STHERM_c21650 [Spirochaeta thermophila DSM 6192] (471 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.132 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 385,403 Number of Sequences: 1700 Number of extensions: 14146 Number of successful extensions: 46 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 0 length of query: 471 length of database: 492,079 effective HSP length: 80 effective length of query: 391 effective length of database: 356,079 effective search space: 139226889 effective search space used: 139226889 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719836|ref|YP_003875368.1| membrane fusion protein [Spirochaeta thermophila DSM 6192] (309 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.133 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 269,855 Number of Sequences: 1700 Number of extensions: 11045 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 309 length of database: 492,079 effective HSP length: 77 effective length of query: 232 effective length of database: 361,179 effective search space: 83793528 effective search space used: 83793528 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719837|ref|YP_003875369.1| acriflavine resistance protein [Spirochaeta thermophila DSM 6192] (1063 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 960,552 Number of Sequences: 1700 Number of extensions: 41854 Number of successful extensions: 173 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 173 Number of HSP's gapped (non-prelim): 0 length of query: 1063 length of database: 492,079 effective HSP length: 86 effective length of query: 977 effective length of database: 345,879 effective search space: 337923783 effective search space used: 337923783 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719838|ref|YP_003875370.1| hypothetical protein STHERM_c21680 [Spirochaeta thermophila DSM 6192] (96 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,264 Number of Sequences: 1700 Number of extensions: 3804 Number of successful extensions: 3 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 96 length of database: 492,079 effective HSP length: 63 effective length of query: 33 effective length of database: 384,979 effective search space: 12704307 effective search space used: 12704307 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719839|ref|YP_003875371.1| hypothetical protein STHERM_c21690 [Spirochaeta thermophila DSM 6192] (673 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.138 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 294,287 Number of Sequences: 1700 Number of extensions: 9992 Number of successful extensions: 49 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 0 length of query: 673 length of database: 492,079 effective HSP length: 83 effective length of query: 590 effective length of database: 350,979 effective search space: 207077610 effective search space used: 207077610 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719840|ref|YP_003875372.1| hypothetical protein STHERM_c21700 [Spirochaeta thermophila DSM 6192] (330 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 312,574 Number of Sequences: 1700 Number of extensions: 13755 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 0 length of query: 330 length of database: 492,079 effective HSP length: 77 effective length of query: 253 effective length of database: 361,179 effective search space: 91378287 effective search space used: 91378287 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719841|ref|YP_003875373.1| hypothetical protein STHERM_c21710 [Spirochaeta thermophila DSM 6192] (353 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14600803|ref|NP_147325.1| methyltransferase [Aeropyrum pernix... 119 1e-28 gi|14601660|ref|NP_148201.1| methyltransferase [Aeropyrum pernix... 44 6e-06 >gi|14600803|ref|NP_147325.1| methyltransferase [Aeropyrum pernix K1] Length = 354 Score = 119 bits (297), Expect = 1e-28 Identities = 99/361 (27%), Positives = 165/361 (45%), Gaps = 20/361 (5%) Query: 2 FILTTHPGLEDIVEAELTRTLTARGLPAGKRIRKPFGLKGNVLYHHPDPEDHAIPVLSSL 61 F+ T +PG ED+V E+ + + ++ + +G +++ + L Sbjct: 3 FLATCNPGTEDVVAREIVEEVDSA------KVEEVGEYRGRIVFRSSGEPWLVAEQIYGL 56 Query: 62 HSIYHIKRYHTHLEVPEGRDILGFI-QEALTTLSFPHLEEASSFRILSERVGD-HPFTHM 119 SI+ EV GR+ L + + A + + H+ ++F + ER+G+ H +T + Sbjct: 57 RSIHSASLLLAEAEVSPGREGLEEVWRAAYKSGAHLHIPYGATFAVRGERIGEGHSYTSV 116 Query: 120 DIERAAGEILHTT------YRCPVNLTSPEVTICVDLYDRHVLVGELLS--RPRFYTRYE 171 +I G+ + +R V L SP+V + ++ +G LL+ R R RY Sbjct: 117 EIASTVGDAVQRAAEESLGWRPMVRLNSPQVVLHAEVDIFTFRLGVLLTGERSRHRRRYR 176 Query: 172 KPYHPRVSLKPPLAYGLLHLSGIFNDPGPLLDPFCGAGTILLEAADLLPEGLPICGLDIS 231 HP +LK LAY +L L+G D +LDP CG GT+ +EAA L C +D++ Sbjct: 177 VYDHP-AALKASLAYVMLRLAGA-RDGDTILDPMCGGGTVAVEAALLFETSRVYC-VDLN 233 Query: 232 WRAFSGTARNLEAEGFERKVRLVLGDARRLSSYFPPESFQYIVTDPPFGVKLGRRLDFED 291 R G N E+ +V + DAR L +S IV++PP+G++LG +D Sbjct: 234 PRHTRGARLNAESARVGGRVEVYTWDARMLHELLGEDSVDRIVSNPPYGIRLGDPVDVRI 293 Query: 292 LFSAFLEEASLVLKPGGTMVFLTMHWRIISRLLGDREDLVVIHRRRVEESTLRPHMVVLR 351 L+ F+ A+ VL+ GG +T + + L + RRV L +VVL Sbjct: 294 LYREFMPSAARVLRSGGRAAIITAETKALV-AAARSSGLRMAGARRVRHGDLWVDIVVLE 352 Query: 352 K 352 K Sbjct: 353 K 353 >gi|14601660|ref|NP_148201.1| methyltransferase [Aeropyrum pernix K1] Length = 350 Score = 43.9 bits (102), Expect = 6e-06 Identities = 43/142 (30%), Positives = 59/142 (41%), Gaps = 6/142 (4%) Query: 172 KPYHPRVSLKPPLAYGLLHLSGIFNDPGPLLDPFCGAGTILLEAADLLPEGLPICGLDIS 231 +P+ L P L+ ++LS + G DPFCG G +EA LL CG D+ Sbjct: 173 RPFFKPGPLSPRLSRAFVNLSRLQRG-GSFADPFCGTGGFAIEAC-LLGASRIACG-DLD 229 Query: 232 WRAFSGTARNLEAEGFERKVRLVLGDARRLSSYFPPESFQYIVTDPPFGVKLGR-RLDFE 290 W G NL +A +L S I TDPP+G R+ + Sbjct: 230 WAMVRGGPLNLSRYCPPGIWFYSAWNAAKLP--LSSNSVDSIATDPPYGRSTTTGRMGYL 287 Query: 291 DLFSAFLEEASLVLKPGGTMVF 312 L AFL A VL+ G +V+ Sbjct: 288 SLTRAFLNTAVEVLRSEGWIVY 309 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.143 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 408,225 Number of Sequences: 1700 Number of extensions: 19676 Number of successful extensions: 67 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 63 Number of HSP's gapped (non-prelim): 2 length of query: 353 length of database: 492,079 effective HSP length: 78 effective length of query: 275 effective length of database: 359,479 effective search space: 98856725 effective search space used: 98856725 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719842|ref|YP_003875374.1| hypothetical protein STHERM_c21720 [Spirochaeta thermophila DSM 6192] (194 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 223,287 Number of Sequences: 1700 Number of extensions: 10312 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 194 length of database: 492,079 effective HSP length: 72 effective length of query: 122 effective length of database: 369,679 effective search space: 45100838 effective search space used: 45100838 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719843|ref|YP_003875375.1| rhomboid family protein [Spirochaeta thermophila DSM 6192] (213 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431630|ref|NP_148231.2| subfamily S26B peptidase [Aeropyru... 46 6e-07 >gi|118431630|ref|NP_148231.2| subfamily S26B peptidase [Aeropyrum pernix K1] Length = 253 Score = 46.2 bits (108), Expect = 6e-07 Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 25/171 (14%) Query: 43 MALNPLYLLKGGMVWQLVSYMFAHASFNHIXXXXXXXXXXXXQVEREMGSREFLLFYFFT 102 + + P Y++ G ++ + + MF H S+ HI +E +G +++ Y + Sbjct: 54 LGMIPAYVVAGERLYTVFTSMFLHGSWAHILGNMLYLYIFGDNIESILGRARYIILYIGS 113 Query: 103 GI-----------FAGLVSLLVYWLSGA--YGVFLLGASGVVYGVLLAFATFYPRARIFL 149 G+ F +L+ LS A + + +GASG + GVL A+A P +R+ + Sbjct: 114 GLGAVVFHIASIAFMPSEALINAALSSANPWMIPAVGASGAISGVLGAYALLIPFSRVRM 173 Query: 150 ---FGIFP----VPAPYLVIGYTAIELL-----AQFGAQDNVAHLTHLAGF 188 +G FP VPA + + +L+ + G +A H+ GF Sbjct: 174 LTFWGWFPLVLSVPASIFIGFWFVYQLVMGLATSVSGVSAGIAFWAHVGGF 224 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.334 0.150 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 213,101 Number of Sequences: 1700 Number of extensions: 9286 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 1 length of query: 213 length of database: 492,079 effective HSP length: 73 effective length of query: 140 effective length of database: 367,979 effective search space: 51517060 effective search space used: 51517060 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719844|ref|YP_003875376.1| hypothetical protein STHERM_c21740 [Spirochaeta thermophila DSM 6192] (223 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 221,875 Number of Sequences: 1700 Number of extensions: 9377 Number of successful extensions: 37 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 223 length of database: 492,079 effective HSP length: 74 effective length of query: 149 effective length of database: 366,279 effective search space: 54575571 effective search space used: 54575571 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719845|ref|YP_003875377.1| phenylalanyl-tRNA synthetase subunit alpha [Spirochaeta thermophila DSM 6192] (514 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431822|ref|NP_148525.2| phenylalanyl-tRNA synthetase subun... 238 3e-64 >gi|118431822|ref|NP_148525.2| phenylalanyl-tRNA synthetase subunit alpha [Aeropyrum pernix K1] Length = 488 Score = 238 bits (607), Expect = 3e-64 Identities = 158/468 (33%), Positives = 237/468 (50%), Gaps = 33/468 (7%) Query: 48 LLAKGLVEEHERATRTYYELTPLGEEYAERGTPEARIXXXXXXXXXXXXXXIASRLDLEQ 107 L KG+VE ER +Y LT G + ERG PE ++ R E Sbjct: 47 LAEKGVVEVEERVEE-HYVLTERGRDALERGLPEEKLVLFLAGRGGEASVEEVRRALGE- 104 Query: 108 KEVGTAFGQMKKDGLLAM-DEEKRVVIADPSATGRIEGVRNLIRKAXXXXXXXXXXXXXX 166 E G A GQ + GL+ + R+ + A I ++ L+ Sbjct: 105 -EAGIALGQAARKGLVVIAGGVVRLAVDQAEALKTITPLKKLLENVASGSKPTVGD---- 159 Query: 167 XXRTLVQTISRKRGAGSEPFKVVEREQVSYVLTREAADVAQELAKAGFTGEELGAVTPEM 226 L + +SR ++ RE ++ R + A+ LA+A E +T +M Sbjct: 160 --ELLREALSRG---------LIRREARRSIVLRLKVNPAEALARARV---EAAVLTRDM 205 Query: 227 LKTGAWKAKRFRPYNIQIPPKRLLIGRTNAYCDYLAWVKDKMVALGFEEFDGPLVETEFW 286 LK+G W+ RF+PYN++ P R+L R + +++ ++D + LGF E GPLVE E + Sbjct: 206 LKSGEWRRLRFKPYNVKAEPPRVLPARRHFLAEFIERLRDILRELGFREVRGPLVELELF 265 Query: 287 NSDALFMPQFHSARDIHDVYYIEEPQYAKEIP-EPYLSRVAATHEHGWETGSRGWEYTFD 345 N D LF Q H AR+IHD +I+ P+ + RVA+ HE RGW+Y + Sbjct: 266 NFDVLFQAQDHPAREIHDSLWIKSPRRGDLSGYSDLVERVASVHE-------RGWKYRWS 318 Query: 346 RTFTRRLILRSQGTVLSAKQLP-KAKVPGKYFGIVRCFRHDQVDATHLSDFYQTEGIVLG 404 R ILRSQ T +SA+ L + P ++F + + FR D V T L +F+Q +GI Sbjct: 319 PEVASRYILRSQTTAVSARILATRPNPPARFFTVGKVFRSDAVGPTRLPEFHQLDGIEGD 378 Query: 405 EEVNLRNLLGLLKMFAEEVAGATEVKYVPGYFPFTEPSVEVHIKHPVLGWFELGGSGIFR 464 E R+LLG L A + ++K+ P YFPFTEPSVE ++K P W EL G+G+FR Sbjct: 379 EGYTFRDLLGRLDEIASMLG--LKLKFKPAYFPFTEPSVEGYVKLPNGRWLELFGAGMFR 436 Query: 465 PEVTKPLGIEVPVLAWGLGIDRMALMHLGLNDLRDLFTYDIEAARLRR 512 PEV + +G++ PV AWG GI+R+A+ G++D+R L+T +++ R R Sbjct: 437 PEVLEAVGVDYPVGAWGFGIERLAMAFYGVSDIRKLYTRNVDEVREMR 484 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 527,283 Number of Sequences: 1700 Number of extensions: 23501 Number of successful extensions: 75 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 2 length of query: 514 length of database: 492,079 effective HSP length: 81 effective length of query: 433 effective length of database: 354,379 effective search space: 153446107 effective search space used: 153446107 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719846|ref|YP_003875378.1| phenylalanyl-tRNA synthetase subunit beta [Spirochaeta thermophila DSM 6192] (567 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601981|ref|NP_148526.1| phenylalanyl-tRNA synthetase subuni... 207 5e-55 >gi|14601981|ref|NP_148526.1| phenylalanyl-tRNA synthetase subunit beta [Aeropyrum pernix K1] Length = 548 Score = 207 bits (527), Expect = 5e-55 Identities = 176/567 (31%), Positives = 266/567 (46%), Gaps = 30/567 (5%) Query: 1 MPKIEISRDKFFDALGRRFSYPELEELLTVAKXXXXXXXXXXXXXKIELNDTNRPDLWSL 60 MP I + R++ G S ELEELL K ++E+N +RPD++ Sbjct: 1 MPVIRVRRERLESLTG--LSIGELEELLFRLKCEVEEPEEGVL--EVEVNP-DRPDMYIG 55 Query: 61 RGLVRQLRTYLGEPAPTYPFISRPNERKESGERTIEVDPGLREIRPYIAGFXXXXXXXXX 120 G+ R ++ G + + E + + + RPYIA Sbjct: 56 EGIARAVKGIAG--------VEEGWDPPELADTPLSLRVERVPQRPYIAAAVVYGVNVDE 107 Query: 121 XXXXXXIQTQEKLCWNFGQKRKAVAMGIYR-STLIRYPVQYKAADPDRTRFVPLSME-KE 178 IQ QEKL + G++R +A+G + + L V+Y+ D TR PL E Sbjct: 108 LFLEELIQFQEKLHDSLGRRRAKIAIGFHDLAKLPSASVEYRLMTLD-TRMKPLGYGGSE 166 Query: 179 LSLREILREHPKGQEFGWIVEHLPAYPFLTDARGEVLSFPPIINSARIGAVEVGDEELFV 238 +S RE L KG +G + ++PFL GEV++ PP+INS I VE G +LF+ Sbjct: 167 MSFREFLLADEKGSLYGGLATKDNSHPFLLSG-GEVIAAPPVINS-EITRVEPGTRDLFI 224 Query: 239 ELTGLDLKTILLACTIVACDMAD-EGFEILPVKVVYPYDTPMGRELTTPFAFQTVEHTTR 297 ++TG + + I+ +A+ EG + V++ + P +TP + Sbjct: 225 DVTGTSAELVAKTLDIIVASLAEREGARVGRVRL----EGPGAVWASTPLLSEAAAKLDP 280 Query: 298 SAVEKLLGLNFTSEEISQALTRMGVSHTIEGDTITIVPPVYRNDFLHPVDIAEDIMIGHG 357 V K LG++ T EE + L RM + + G + + P +R D L VD+ EDI I G Sbjct: 281 GTVSKALGVDLTPEEAALHLRRMRHNASPAGGLVNVRVPPFRVDILGEVDLVEDIAISIG 340 Query: 358 MDRFDPEMPRDFTVGRLSAAEERNRRVKMLMVGMGFQEMIFNYLGSRRDFIEKMRVSDED 417 + P P F G L R VK L+VG+GF E++ L S R +E S Sbjct: 341 YEALGPRWPGKFHGGSLRWETHVYRAVKDLLVGLGFTEVLQLVLTSPR-LVEAAGFSSM- 398 Query: 418 AIRVANPLSENYEYVRPSVLPSLLAAESVSSHAVYPHHIFETGK-VAKKDPEDNYGSKTY 476 A+ V NP+ + Y +RP++L +LL + H P +FE G V +D E K Sbjct: 399 AVEVLNPVQQEYSVLRPTLLITLLQTLRENQHRRKPVKVFEAGNAVYLEDGEPRDEEKL- 457 Query: 477 NMLGFLSADPKADFNMTSSHVAALCYYLGKEYTLEPKEDPRFVPGRTAALLVGGREVGIF 536 LG L D +A F + + A+ +G ++ +E P F+ GRTAA+ VGG +G Sbjct: 458 -ALGVL--DEEAGFEDVQAPLYAVLRIMGVDFEVEEASHPMFMEGRTAAVKVGGERLGYI 514 Query: 537 GEVHPEVLENWGITMPCAACEINLDIL 563 GEV PEVLE +G+ P AA EI+L++L Sbjct: 515 GEVKPEVLEAFGLEYPVAAAEISLEVL 541 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 565,424 Number of Sequences: 1700 Number of extensions: 24716 Number of successful extensions: 69 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 1 length of query: 567 length of database: 492,079 effective HSP length: 82 effective length of query: 485 effective length of database: 352,679 effective search space: 171049315 effective search space used: 171049315 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719847|ref|YP_003875379.1| hypothetical protein STHERM_c21770 [Spirochaeta thermophila DSM 6192] (319 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 316,065 Number of Sequences: 1700 Number of extensions: 13757 Number of successful extensions: 33 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 0 length of query: 319 length of database: 492,079 effective HSP length: 77 effective length of query: 242 effective length of database: 361,179 effective search space: 87405318 effective search space used: 87405318 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719848|ref|YP_003875380.1| cobyrinic acid a,c-diamide synthase [Spirochaeta thermophila DSM 6192] (255 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 254,979 Number of Sequences: 1700 Number of extensions: 10724 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 255 length of database: 492,079 effective HSP length: 75 effective length of query: 180 effective length of database: 364,579 effective search space: 65624220 effective search space used: 65624220 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719849|ref|YP_003875381.1| hypothetical protein STHERM_c21790 [Spirochaeta thermophila DSM 6192] (205 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.141 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 207,276 Number of Sequences: 1700 Number of extensions: 8353 Number of successful extensions: 26 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 0 length of query: 205 length of database: 492,079 effective HSP length: 73 effective length of query: 132 effective length of database: 367,979 effective search space: 48573228 effective search space used: 48573228 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719850|ref|YP_003875382.1| hypothetical protein STHERM_c21800 [Spirochaeta thermophila DSM 6192] (236 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 275,333 Number of Sequences: 1700 Number of extensions: 13768 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 236 length of database: 492,079 effective HSP length: 74 effective length of query: 162 effective length of database: 366,279 effective search space: 59337198 effective search space used: 59337198 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719851|ref|YP_003875383.1| hypothetical protein STHERM_c21810 [Spirochaeta thermophila DSM 6192] (336 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 386,978 Number of Sequences: 1700 Number of extensions: 19079 Number of successful extensions: 55 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 0 length of query: 336 length of database: 492,079 effective HSP length: 77 effective length of query: 259 effective length of database: 361,179 effective search space: 93545361 effective search space used: 93545361 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719852|ref|YP_003875384.1| hypothetical protein STHERM_c21820 [Spirochaeta thermophila DSM 6192] (134 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.142 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 157,802 Number of Sequences: 1700 Number of extensions: 7196 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 134 length of database: 492,079 effective HSP length: 68 effective length of query: 66 effective length of database: 376,479 effective search space: 24847614 effective search space used: 24847614 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719853|ref|YP_003875385.1| hypothetical protein STHERM_c21830 [Spirochaeta thermophila DSM 6192] (716 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 471,204 Number of Sequences: 1700 Number of extensions: 16711 Number of successful extensions: 88 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88 Number of HSP's gapped (non-prelim): 0 length of query: 716 length of database: 492,079 effective HSP length: 83 effective length of query: 633 effective length of database: 350,979 effective search space: 222169707 effective search space used: 222169707 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719854|ref|YP_003875386.1| hypothetical protein STHERM_c21840 [Spirochaeta thermophila DSM 6192] (348 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.142 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 317,570 Number of Sequences: 1700 Number of extensions: 12903 Number of successful extensions: 59 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 0 length of query: 348 length of database: 492,079 effective HSP length: 78 effective length of query: 270 effective length of database: 359,479 effective search space: 97059330 effective search space used: 97059330 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719855|ref|YP_003875387.1| hypothetical protein STHERM_c21860 [Spirochaeta thermophila DSM 6192] (170 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601419|ref|NP_147956.1| hypothetical protein APE_1457 [Aero... 73 3e-15 >gi|14601419|ref|NP_147956.1| hypothetical protein APE_1457 [Aeropyrum pernix K1] Length = 173 Score = 73.2 bits (178), Expect = 3e-15 Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 5/139 (3%) Query: 32 YQYWVGARVMEGPMRSEVEPELLTHATEELG-HAELLAGRIIQLGGTPLLSPFEWQKVAG 90 Y Y A ++GP + + A EE+G HA+++A R+ P + +++G Sbjct: 34 YYYMYTALAVKGPHAETISEIFMKEAEEEIGKHAKMIAERLQDFDVDPPRDFAKLYEISG 93 Query: 91 CDYA-VPSDPY-IEEILSQNLEGERCAIRRYEQIADFTNGKDHTTYQMAVQILNDELEHE 148 C Y +P DPY ++ + ++ E CAI+ Y+++ D T+G D T ++A +L DE H Sbjct: 94 CKYPPLPEDPYDVDGFIIAAVKAEICAIKAYKELFDLTHGTDPATEELAEDLLRDETRHR 153 Query: 149 QDIEDWL--RDIERMKEEL 165 ++ + L IER+K EL Sbjct: 154 TELVNLLTKEGIERLKREL 172 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 163,420 Number of Sequences: 1700 Number of extensions: 6544 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 1 length of query: 170 length of database: 492,079 effective HSP length: 71 effective length of query: 99 effective length of database: 371,379 effective search space: 36766521 effective search space used: 36766521 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719856|ref|YP_003875388.1| hypothetical protein STHERM_c21870 [Spirochaeta thermophila DSM 6192] (571 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.316 0.138 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 495,715 Number of Sequences: 1700 Number of extensions: 19244 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 0 length of query: 571 length of database: 492,079 effective HSP length: 82 effective length of query: 489 effective length of database: 352,679 effective search space: 172460031 effective search space used: 172460031 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719857|ref|YP_003875389.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (398 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 395,052 Number of Sequences: 1700 Number of extensions: 17747 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 398 length of database: 492,079 effective HSP length: 79 effective length of query: 319 effective length of database: 357,779 effective search space: 114131501 effective search space used: 114131501 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719858|ref|YP_003875390.1| chemotaxis protein methyltransferase [Spirochaeta thermophila DSM 6192] (272 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 238,732 Number of Sequences: 1700 Number of extensions: 9206 Number of successful extensions: 22 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 0 length of query: 272 length of database: 492,079 effective HSP length: 75 effective length of query: 197 effective length of database: 364,579 effective search space: 71822063 effective search space used: 71822063 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719859|ref|YP_003875391.1| CTP synthase [Spirochaeta thermophila DSM 6192] (543 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601511|ref|NP_148051.1| CTP synthetase [Aeropyrum pernix K1] 508 e-145 >gi|14601511|ref|NP_148051.1| CTP synthetase [Aeropyrum pernix K1] Length = 538 Score = 508 bits (1307), Expect = e-145 Identities = 268/530 (50%), Positives = 347/530 (65%), Gaps = 6/530 (1%) Query: 3 KYIFVTGGVCSSLGKGIAAASIGSLLELQGLTVRMIKIDPYLNVDAGTMSPYQHGEVYVT 62 KY+ VTGGV SS+GKG+ AS+ LL +G +V IKIDPY+NVDAGTM+PY HGEV+VT Sbjct: 5 KYVIVTGGVLSSVGKGLTTASLALLLSSRGYSVEAIKIDPYINVDAGTMNPYMHGEVFVT 64 Query: 63 DDGAETDLDLGNYARFTNSPLSRANSITTGQIYMDVIQMEREGRFLGRTVQVIPHITDRI 122 +DG ETDLD+G+Y RF LSR ++ITTGQIY VI ER G +LG+TVQVIPHITD I Sbjct: 65 EDGGETDLDIGHYERFLGKNLSRKHNITTGQIYFSVISKERSGDYLGQTVQVIPHITDEI 124 Query: 123 KHRIKAIGDEEGVDVTIVEIGGTVGDIESFPFLEAVRQIIHEKGHRNALSVHLTLVP-LV 181 K RIK +GD G DV IVEIGGTVGDIE PFLEA RQ+ E+G N +H+ L P L Sbjct: 125 KSRIKEVGDVSGADVVIVEIGGTVGDIEGLPFLEAARQMRLEEGFDNTFFIHVALSPYLP 184 Query: 182 SGGELKTKPTQHSVKELLGLGIQPDILLCRAPMPLDEPLRKKISLFTNVEPRAVISAYDV 241 + GE KTKP QHS++EL +GIQPD ++ R+ PL++ +KI+L+ + VI++YD+ Sbjct: 185 TTGEQKTKPVQHSIQELRRIGIQPDAVVVRSHQPLEQEGLRKIALYATLPMENVINSYDI 244 Query: 242 PHTIYEIPLSFHKQDLDTIILEKLNLPVKTPDLSAWEQVVDILVNAKESVTIGFVGKYIE 301 IY +PL KQ L ++ +L PDLS WE+ V + A V + VGKY + Sbjct: 245 -ENIYRLPLLLEKQGLARLVERRLFGRETRPDLSRWEEFVALYEKASRRVKVAMVGKYTK 303 Query: 302 LGDAYKSVDEALYHGGVANEVRVVLKKIDAESLEK-TEDLDNAFKDVDAIIVPGGFGQRG 360 L D+Y S+ EAL H VR L +++ +E+ D+D F++ D IV GFG RG Sbjct: 304 LRDSYISIVEALKHASAYEGVRPELLWVESTDIERGVVDVDRVFEEADGAIVLPGFGVRG 363 Query: 361 IEGMIRAAEYARTRNIPYLGICLGMQVMVIEFARNVLGLKDADSTEFTPTTPHPVVSLLE 420 +EG I A R P LGIC GMQ+ V+E+ARNVLGLK+A +TE P TPHPVV LL Sbjct: 364 VEGKIEAIRRFREGKKPMLGICFGMQLSVVEYARNVLGLKEAHTTEVNPETPHPVVDLLP 423 Query: 421 EQVDITMMGGTMRLGAYEAELMPGSLLRSLYGVETIQERHRHRYEFSNQYREQFASSGMR 480 EQ I +GGTMRLGA ++ G++L SLYG E ERHRHRYE + Y ++ +G+ Sbjct: 424 EQRGIDKLGGTMRLGARPVRIVEGTILWSLYGRELASERHRHRYEVNPTYVDRLVEAGLV 483 Query: 481 IAAVYRANNLVEGVEW--EGHPWGIGVQFHPEFKSKPLAPHPLFSSFIRA 528 ++A + VE VE HP+ + QFHPEFKS+PL P P+F F+ A Sbjct: 484 VSA-WSQEGYVEAVELRPRDHPFFLATQFHPEFKSRPLNPAPVFKGFVTA 532 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 567,213 Number of Sequences: 1700 Number of extensions: 26342 Number of successful extensions: 84 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79 Number of HSP's gapped (non-prelim): 1 length of query: 543 length of database: 492,079 effective HSP length: 81 effective length of query: 462 effective length of database: 354,379 effective search space: 163723098 effective search space used: 163723098 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719860|ref|YP_003875392.1| hypothetical protein STHERM_c21910 [Spirochaeta thermophila DSM 6192] (181 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.131 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 174,791 Number of Sequences: 1700 Number of extensions: 7100 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 181 length of database: 492,079 effective HSP length: 71 effective length of query: 110 effective length of database: 371,379 effective search space: 40851690 effective search space used: 40851690 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719861|ref|YP_003875393.1| hypothetical protein STHERM_c21920 [Spirochaeta thermophila DSM 6192] (210 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 184,610 Number of Sequences: 1700 Number of extensions: 7640 Number of successful extensions: 14 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 210 length of database: 492,079 effective HSP length: 73 effective length of query: 137 effective length of database: 367,979 effective search space: 50413123 effective search space used: 50413123 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719862|ref|YP_003875394.1| transporter [Spirochaeta thermophila DSM 6192] (243 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 145 9e-37 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 143 4e-36 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 134 3e-33 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 130 2e-32 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 126 4e-31 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 122 6e-30 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 119 9e-29 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 116 5e-28 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 114 2e-27 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 112 1e-26 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 112 1e-26 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 110 4e-26 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 108 1e-25 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 107 4e-25 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 106 5e-25 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 106 5e-25 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 103 3e-24 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 101 2e-23 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 100 3e-23 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 99 8e-23 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 98 2e-22 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 97 3e-22 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 97 3e-22 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 95 1e-21 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 91 4e-20 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 87 3e-19 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 87 5e-19 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 85 1e-18 gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 85 2e-18 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 85 2e-18 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 81 2e-17 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 79 8e-17 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 79 1e-16 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 76 9e-16 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 72 1e-14 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 71 2e-14 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 71 2e-14 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 64 3e-12 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 64 3e-12 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 64 5e-12 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 56 1e-09 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 145 bits (366), Expect = 9e-37 Identities = 87/240 (36%), Positives = 137/240 (57%), Gaps = 4/240 (1%) Query: 1 MSEHVLGVDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEG 60 M+E +L V + +G+ + VS + GE+V LLG NGAGKTT + G L P G Sbjct: 2 MAEPLLEVKSIDVYYGEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNG 61 Query: 61 RVYFDFHDISRLPMYKRARLGISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQRTL 120 + + DI+ LP +KR GIS++P+ IF RLTV EN+ TR+ +E Q +L Sbjct: 62 SIIWQGRDITGLPAFKRVEEGISHVPEGRGIFPRLTVYENLRVAASTRR--AKEHFQDSL 119 Query: 121 EELLAEMGITHIRK-QKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIK 179 E++ I R+ Q A TLSGGE++ IARAL RP L++DEP G+ P ++ Sbjct: 120 EQVYTIFPILKARRSQLAGTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVI 179 Query: 180 QIIAQLSNK-GIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDLVNNEIARRIYLG 238 + ++L + G+ IL+ + NV +L++ R Y++ G I+++G+ ++L + + YLG Sbjct: 180 YLASRLREELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGASDELALDPRIKAAYLG 239 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 143 bits (361), Expect = 4e-36 Identities = 84/234 (35%), Positives = 133/234 (56%), Gaps = 1/234 (0%) Query: 5 VLGVDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYF 64 +L V + KRFG +K VSF +R GE VGL+GPNGAGKTT+F ++ G P GRV + Sbjct: 4 ILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIY 63 Query: 65 DFHDISRLPMYKRARLGISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQRTLEELL 124 DI+ P Y+R+R GI+ Q LTV NV R + RE ++R + E + Sbjct: 64 KGVDITGWPAYRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAM-EAI 122 Query: 125 AEMGITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQ 184 +G+ A L+ E++R E+ARALA +P LLLDE AG+ P V ++ + + Sbjct: 123 DMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLE 182 Query: 185 LSNKGIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDLVNNEIARRIYLG 238 +S +GI I++ +H +R + R +++ GE + +G+ ++ +N++ Y+G Sbjct: 183 ISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVASNKLVIEAYMG 236 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 134 bits (336), Expect = 3e-33 Identities = 78/239 (32%), Positives = 135/239 (56%), Gaps = 4/239 (1%) Query: 1 MSEHVLGVDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEG 60 M + ++ ++ + +GK + DVS E+ G + ++GPNGAGK+T+ + GF T +G Sbjct: 1 MGDWIIKLEDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKG 60 Query: 61 RVYFDFHDISRLPMYKRARLGISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQRTL 120 RV F+ D++ +P + RA++G++++ Q +IFR LTV EN + DL + + L Sbjct: 61 RVLFENTDVTHMPPHDRAKIGMTFIFQLENIFRELTVYEN---LRLAGYDLPEDVFRDRL 117 Query: 121 EELLAEMGITHIR-KQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIK 179 EE+ + R QKA TLSGGER+ +A + +P L+DEP AG+ P E+ Sbjct: 118 EEVFSMFPRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVL 177 Query: 180 QIIAQLSNKGIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDLVNNEIARRIYLG 238 + L+ +G +++ + NV+ +LEI + ++ G I G E+L+ + ++YLG Sbjct: 178 SYVRILNKEGYTVVLVEQNVKASLEIGDKGVLVVNGRIAFDGPAEELLARKDLAKMYLG 236 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 130 bits (328), Expect = 2e-32 Identities = 82/248 (33%), Positives = 134/248 (54%), Gaps = 14/248 (5%) Query: 5 VLGVDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYF 64 +L V+ L KRFG + V+ E+ G+V L+GPNG+GKTT+ ++ GF P GRV F Sbjct: 6 ILRVEDLEKRFGGIVALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLF 65 Query: 65 DFHDISRLPMYKRARLGISYLPQEPSIFRRLTVEENVWAILETRKD------LTRE---- 114 DI+ + ++ ++LG+ Q P F LTV ENV ++ + L R Sbjct: 66 KGRDITGMSPHEISKLGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWLG 125 Query: 115 -EKQRTLE--ELLAEMGITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGID 171 EK+ E+L +G+ H+ +++ LSGG+ + EIARA+ +++DEP AG++ Sbjct: 126 FEKRAAARAFEILGWVGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVN 185 Query: 172 PIAVYEIKQIIAQLS-NKGIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDLVNNE 230 P I + I L+ KGI LI +H + E R Y +++G+++ G ++++NN Sbjct: 186 PRLAGSIMERIKYLAREKGITFLIIEHRIGLVKEYVDRVYAMSMGKVIASGKPDEVLNNP 245 Query: 231 IARRIYLG 238 + YLG Sbjct: 246 VVLESYLG 253 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 126 bits (317), Expect = 4e-31 Identities = 73/220 (33%), Positives = 124/220 (56%), Gaps = 5/220 (2%) Query: 8 VDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDFH 67 ++G+VKRFGK +K + E++ GE V LLGP+G GKTT +V G P GRVYFD Sbjct: 6 LEGIVKRFGKTVALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPDAGRVYFDGR 65 Query: 68 DISRLPMYKRARLGISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQRTLEELLAEM 127 D++ LP R ++ + Q +++ + V +N+ L+ +K L R+E R + + Sbjct: 66 DVTGLPPKDR---NVAMVFQSYALWPHMRVFDNIAFPLKIKK-LPRDEIVRRVRWAAELL 121 Query: 128 GITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQLSN 187 I H+ + + LSGG+++R +ARA+ P LL+DEP + +D I +++ I +L Sbjct: 122 EIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRIKMRSEIKKLQR 181 Query: 188 K-GIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDL 226 + G+ ++ H+ + + I R ++N GEI G+ D+ Sbjct: 182 RLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQVGTPSDV 221 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 122 bits (307), Expect = 6e-30 Identities = 74/253 (29%), Positives = 130/253 (51%), Gaps = 21/253 (8%) Query: 5 VLGVDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYF 64 +L + + RFG T + +VS E+R GE++G++GPNGAGKT++ ++ G P GRVYF Sbjct: 1 MLWTENITLRFGGVTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYF 60 Query: 65 DFHDISRLPMYKRARLGISYLPQEPSIFRRLTVEENV-----------------WAILET 107 DI+ L ++R LG+S Q +F +TV EN+ WA Sbjct: 61 KGRDITGLKPHQRITLGLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAK 120 Query: 108 RKDLTREEKQRTLEELLAEMGITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPF 167 R ++ E+ + +LL + R L G +++ ++A ALA P +L+DEP Sbjct: 121 RWEVEARERAEHVIDLL---DLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPM 177 Query: 168 AGIDPIAVYEIKQIIAQLS-NKGIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDL 226 AG+ +I + I + S +++ +H++ ++ R +++ G+++ +G + Sbjct: 178 AGLSKEEKEDIVRAIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKVIFEGPPHEA 237 Query: 227 VNNEIARRIYLGE 239 V +E R+ YLGE Sbjct: 238 VADERVRKAYLGE 250 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 119 bits (297), Expect = 9e-29 Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 5/211 (2%) Query: 8 VDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDFH 67 ++ + KRFG + VS + GE+ LLGP+G GKTT ++ GF TP EGRVY Sbjct: 6 LESVTKRFGNTVALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPDEGRVYIGSR 65 Query: 68 DISRLPMYKRARLGISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQRTLEELLAEM 127 D++ L Y+R + + Q +++ + V +N+ L+ RK L R E R + + Sbjct: 66 DVTMLKPYER---NTAMVFQNYALWPHMRVFDNIAYGLKLRK-LPRSEIVRRVRWAAELL 121 Query: 128 GITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQLSN 187 I H+ + + LSGG+++R +ARA+ P LL+DEP + +D ++++ I +L Sbjct: 122 EIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRLKMREEIVRLQK 181 Query: 188 K-GIGILITDHNVRDTLEITHRSYIINLGEI 217 + G+ I+ H+ + L I+HR ++N G + Sbjct: 182 RLGVTIVYVTHDQEEALSISHRVAVMNRGRV 212 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 116 bits (291), Expect = 5e-28 Identities = 68/235 (28%), Positives = 123/235 (52%), Gaps = 2/235 (0%) Query: 5 VLGVDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYF 64 +L V GLV + + V+K V + GE + ++GP+G+GK+T+ + + P G + F Sbjct: 4 LLEVRGLVVSYSGEKVLKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVF 63 Query: 65 DFHDISRLP--MYKRARLGISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQRTLEE 122 D++RL + R I YLPQ S+F +TV N+ LE L+R + + + Sbjct: 64 RGVDVTRLSGSQLRMVRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAEERAVK 123 Query: 123 LLAEMGITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQII 182 L+ +GI + + LSGG+++R +ARALA+ P LLLDEP + +DP + ++ + + Sbjct: 124 YLSMLGIEDLAHRHPARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEAL 183 Query: 183 AQLSNKGIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDLVNNEIARRIYL 237 +++ G +++ H +++ R + G + +G +LV R +L Sbjct: 184 FRVATLGKAMIVVTHEADFAVKVADRMAFMEDGIVKEEGKPSELVEGSERVRRFL 238 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 114 bits (286), Expect = 2e-27 Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 16/228 (7%) Query: 20 VVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFL-----TPTEGRVYFDFHDISRLPM 74 V+K++S + G + L+GPNGAGKTT+ V G + T G + + DI+ Sbjct: 20 VIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERGRVTRGSIQLEGEDITNREP 79 Query: 75 YKRARLGISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQRTLE---ELLAEMGITH 131 + AR G+ Y+ + IF+ LT EEN+ ++ +R++ + L L +G Sbjct: 80 DEIARRGVIYVMEGRRIFKELTTEENLVSVAYA-AGASRDDIRSVLSYFPRLKERLG--- 135 Query: 132 IRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQL-SNKGI 190 +KA LSGGE++ IA AL RP L+LDEP G+ P +I I L +G+ Sbjct: 136 ---EKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPKITSQIYATIKMLHREEGL 192 Query: 191 GILITDHNVRDTLEITHRSYIINLGEILVQGSREDLVNNEIARRIYLG 238 IL+ + N R LEI+ Y+I G I+++GS E+L ++ YLG Sbjct: 193 TILLAEQNARKALEISDYGYVIENGRIVLEGSAEELRLDKDVAEFYLG 240 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 112 bits (279), Expect = 1e-26 Identities = 75/236 (31%), Positives = 120/236 (50%), Gaps = 3/236 (1%) Query: 2 SEHVLGVDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGR 61 SE ++ + LVK +G V VSF + GE+ LLGPNGAGKTT M+ L PT G Sbjct: 3 SEAMVVAEELVKDYGGFRAVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTSGE 62 Query: 62 VYFDFHDISRLPMYKRARLGISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQRTLE 121 + + I R P R +G+ +PQ+ + ++ +NV+ + E ++RT Sbjct: 63 AWIAGYSIVREPGNVRRVIGL--VPQDLTADDEMSGWDNVYIQARLYGLPSSEARERT-R 119 Query: 122 ELLAEMGITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQI 181 E+L + + ++ T SGG RR+ EIA +L P L LDEP G+D + + + Sbjct: 120 EVLDYLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRSLWRY 179 Query: 182 IAQLSNKGIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDLVNNEIARRIYL 237 I L + IL+T H + + ++ R II+ G I+ +G+ E+L +Y+ Sbjct: 180 IEDLKRSAVTILLTTHYMEEAEMLSDRVAIIDRGRIVAEGTPEELKARVKGETVYI 235 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 112 bits (279), Expect = 1e-26 Identities = 73/222 (32%), Positives = 120/222 (54%), Gaps = 9/222 (4%) Query: 8 VDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDFH 67 ++G+ K FG V+DV+ + E V +LGP+G+GKTT+ Y++ G P+ GR+YF+ Sbjct: 6 LEGVWKVFGNVVAVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPSRGRIYFNDV 65 Query: 68 DISRLPMYKRARLGISYLPQEPSIFRRLTVEENVWAILETRK--DLTREEKQRTLEELLA 125 D++ LP KR I + Q +++ +TV EN+ L R + +EK ++ +LL Sbjct: 66 DVTDLPPNKR---NIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAIKEKVLSVAKLL- 121 Query: 126 EMGITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQL 185 GI + + LSGG+++R +ARAL P LLLDEP + +D + +I+ + +L Sbjct: 122 --GIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRIKIRSELKKL 179 Query: 186 SNK-GIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDL 226 + GI + H+ + L + R II G I G D+ Sbjct: 180 QKELGITAIYVTHDQSEALAMADRIAIIASGVIQQVGKPWDV 221 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 110 bits (274), Expect = 4e-26 Identities = 70/224 (31%), Positives = 123/224 (54%), Gaps = 14/224 (6%) Query: 9 DGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDFHD 68 +G+ KR G + V+KDVS + G V G++GPNGAGKTT+F ++G GRV Sbjct: 12 EGVWKRLGGRWVLKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALLGEP 71 Query: 69 ISRL--PMYKRARLGISYLPQEPSIFRRLTVEE--NVWAILETRKDLTREEKQRTLEELL 124 + R +++R ++YLP++ +R +T E ++A + +DL + LEE Sbjct: 72 VERAGGSLFRR----VAYLPEDGEPYRNMTGHEFLRLYASIYGVEDL-----EGYLEEAS 122 Query: 125 AEMGITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQ 184 G+ ++ + S G RRR +A LA++P+ +LDEP AG+DP+ I++++ + Sbjct: 123 RLSGLGGRLGERVRSYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKE 182 Query: 185 LSNK-GIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDLV 227 S + G+ +L++ HN+ + + +I+ G I+ GS + V Sbjct: 183 YSERHGVTVLLSSHNMYEVESVCSEITMISSGRIVYSGSPGEAV 226 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 108 bits (270), Expect = 1e-25 Identities = 70/203 (34%), Positives = 110/203 (54%), Gaps = 2/203 (0%) Query: 24 VSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDFHDISRLPMYKRARLGIS 83 V ++ G + LLGPNGAGKTT+ ++ L P G D+ R R+R+G+ Sbjct: 32 VDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLLPDSGWARVAGFDVVREANNVRSRIGV- 90 Query: 84 YLPQEPSIFRRLTVEENVWAILETRKDLTREEKQRTLEELLAEMGITHIRKQKAYTLSGG 143 L E +++ RL+ +N+W + RE K+R ++ELL +G+ + S G Sbjct: 91 VLGGERALYWRLSGWDNLWFFSQLYGIPPREAKRR-VKELLEIVGLEEWAHVRVENYSKG 149 Query: 144 ERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQLSNKGIGILITDHNVRDTL 203 ++R IAR L P LLLDEP G+DP A E++ II ++ +G +L+T H + + Sbjct: 150 MKQRLHIARGLINDPEVLLLDEPTIGLDPKAAREVRSIIRRIVREGRTVLLTTHYMVEAE 209 Query: 204 EITHRSYIINLGEILVQGSREDL 226 E++ R II+ G I+ +G EDL Sbjct: 210 ELSDRVAIISKGRIVAEGPPEDL 232 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 107 bits (266), Expect = 4e-25 Identities = 76/221 (34%), Positives = 115/221 (52%), Gaps = 9/221 (4%) Query: 10 GLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDFHDI 69 GL KRFG +T V VSF + GE ++GPNG+GKTT+ MV G L P+ G V +D+ Sbjct: 9 GLRKRFGGRTAVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVCGYDV 68 Query: 70 SRLPMYKRARLGISYLPQEPSIFRRLTVEEN---VWAILETRKDLTREEKQRTLEELLAE 126 ++ AR I + PQ+P + RR+T E V +L + R E +R LE L Sbjct: 69 WG-DGWREARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREARRVLEML--- 124 Query: 127 MGITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQLS 186 G + + LSGG+RR IA ALA P ++LDEP +G+D + E + + Sbjct: 125 -GFEDVLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLD-VRARESLWASLRKA 182 Query: 187 NKGIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDLV 227 KG +L + H+ ++ + R I++ G + G +L+ Sbjct: 183 FKGRTVLFSSHDPQEAEAESDRVLIMHRGRLAAWGKPRELI 223 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 106 bits (265), Expect = 5e-25 Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 9/223 (4%) Query: 5 VLGVDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYF 64 VL G+VK++ + V+ V E+ GE VGL+GPNGAGKTT+ + +G GRV Sbjct: 4 VLEARGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLL 63 Query: 65 DFHDISRLPMYKRARLGISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQRTLEELL 124 + D R P RAR G+ + + P++ + V E LE+ + R ++ + Sbjct: 64 NGLDPWREP---RAREGVGVVFERPNLPSSMPVVE----FLESAAAIIGSSPSR-VDWAI 115 Query: 125 AEMGITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQ 184 G+ + LS G ++R IA AL P FL+ DEP + +DP+ E+ +++A+ Sbjct: 116 RAAGLEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLAR 175 Query: 185 LSNK-GIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDL 226 L+ + G+ +L++ H + + L + R Y++ G + +GS EDL Sbjct: 176 LNREHGLSLLVSSHVIVELLRVATRIYVLAGGRLAAEGSPEDL 218 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 106 bits (265), Expect = 5e-25 Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 10/232 (4%) Query: 8 VDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDFH 67 V+ L + + V+ V+ E R +V ++GPNGAGKTT ++G + P GRV+ D Sbjct: 5 VEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLDGF 64 Query: 68 DISRLPMYKRARLGISYLPQEPSI--FRRLTVEENVWAILETRKDLTREEKQRTLEELLA 125 + + P G Y+PQ PS +TV E V L R +TR ++ E+L Sbjct: 65 EATGRPEMVGRYAG--YVPQNPSAPKLSPMTVREFVETSLRLR-GVTRARERAV--EVLH 119 Query: 126 EMGIT-HIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQ 184 +GI + + + + LS G +R IARA+A P L++DEP A +DP EI +IIA Sbjct: 120 TLGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAG 179 Query: 185 LSNKGIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDLVNNEIARRIY 236 L+ + + +L+T H+ L T +IN +++ G E++ ++ RR+Y Sbjct: 180 LARERL-VLMTSHDPSLLLGHTDIIVVIN-RDLIASGPPEEVYREDVLRRVY 229 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 103 bits (258), Expect = 3e-24 Identities = 63/223 (28%), Positives = 119/223 (53%), Gaps = 7/223 (3%) Query: 8 VDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDFH 67 ++G+VKRFGK V V ++ GE LLGP+G GKTT ++ G P EGR+ D Sbjct: 6 LEGVVKRFGKVVAVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPDEGRILIDGE 65 Query: 68 DISRLPMYKRARLGISYLPQEPSIFRRLTVEENVWAILETRK---DLTREEKQRTLEELL 124 D++ R ++ + Q +++ ++V +N+ L R+ LT+++ +R + E+ Sbjct: 66 DVTFKDPKDR---NVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLTKDDIRRRVIEVA 122 Query: 125 AEMGITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQ 184 + I + +K LSGG+++R +ARAL RP L+DEP + +D + ++ + + Sbjct: 123 KLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDALLRLAMRAELKK 182 Query: 185 L-SNKGIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDL 226 L + I + H+ + + + R ++N G ++ G+ E++ Sbjct: 183 LQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQVGTPEEV 225 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 101 bits (252), Expect = 2e-23 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 13/231 (5%) Query: 6 LGVDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVG--FLTPTEGRVY 63 L V GL + G+K V+ V F+++ GEV ++GPNG+GK+++ Y+++G EG + Sbjct: 3 LEVKGLTAKIGEKVVLNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDIL 62 Query: 64 FDFHDISRLPMYKRARLGISYLPQEPSIFRRLTVEENVWAILETR---KDLTREEKQRTL 120 D I LP +RA GI Q+P + + + A + R +DL++ + + Sbjct: 63 LDGESIKELPPEERALKGIFMAQQDPPQIPGVRLSSLIIAFVNKRLGAQDLSKPADPKIV 122 Query: 121 E---ELLAEMGITH--IRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAV 175 + E ++G+ + ++ SGGE++R+E+ +A+ P ++LDEP +G+D + Sbjct: 123 KRMYEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGL 182 Query: 176 YEIKQIIAQLSNKGIGILITDHNVR--DTLEITHRSYIINLGEILVQGSRE 224 + + I QL + G G+++ H R + +E R ++ G +L +G E Sbjct: 183 KIVAEFIKQLRDSGRGVMLITHYARLLNFVE-PDRVTVLYRGSVLARGGAE 232 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 100 bits (249), Expect = 3e-23 Identities = 67/227 (29%), Positives = 123/227 (54%), Gaps = 16/227 (7%) Query: 8 VDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDFH 67 +D + +G+ ++ VSF + +LGP+G GKTT+ ++ G L P GRV+F Sbjct: 8 LDNVHASYGEVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGRVFFGGV 67 Query: 68 DISRLPMYKRARLGISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQRTLEELLAEM 127 D + LP +R+ + ++ Q+ ++F +TV +NV L R + E +R +E L + Sbjct: 68 DYTGLPPERRS---VGFVFQDLALFPHMTVYDNVAFGLRAR-GFSGGEVRRQVEWALETV 123 Query: 128 GITHIRK---QKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQ-IIA 183 G+T R+ ++ LSGG+++R +ARA+A P LLLDEP + +D ++I+Q ++A Sbjct: 124 GLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLD----FKIRQRLLA 179 Query: 184 QLS----NKGIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDL 226 +L G ++ H+ + +E+ I+ G I+ G+ ++ Sbjct: 180 ELKRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTPSEV 226 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 99.4 bits (246), Expect = 8e-23 Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 2/215 (0%) Query: 4 HVLGVDGLVKRFGKKTVVKD-VSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRV 62 H + + G+VK + D V F +R GEV LLG NGAGKTT+ ++ G + PT G + Sbjct: 11 HAVAMRGIVKVYPDGVKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEI 70 Query: 63 YFDFHDISRLPMYKRARLGISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQRTLEE 122 Y +S + R GI+ + Q+ + +TVEEN+ AI + L R E +R E Sbjct: 71 YVWGRKVSWRGPWDAIRNGIAMVYQQFRLVESMTVEENI-AIYLSSLGLGRSEARRRTLE 129 Query: 123 LLAEMGITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQII 182 +G+ + L G R+R EI +AL+ L+LDEP + + P+ ++ + Sbjct: 130 TAERLGLEIDLAKTVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTL 189 Query: 183 AQLSNKGIGILITDHNVRDTLEITHRSYIINLGEI 217 L + G+ ++ H + + + + R ++ G + Sbjct: 190 RLLKDMGVSVVYITHKLGEVVRVADRVTVLRRGRV 224 Score = 60.5 bits (145), Expect = 4e-11 Identities = 48/203 (23%), Positives = 95/203 (46%), Gaps = 8/203 (3%) Query: 21 VKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDFHDISRLPMYKRARL 80 V++VS E+R GE+VG+ G G G+ + ++G P G + I + RA Sbjct: 278 VREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEVQGRRIEGSLDFYRAGG 337 Query: 81 GISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQRTLEELLAEMGITHIR--KQKAY 138 G + + +V EN+ A L T ++ LE+L + + R + + Sbjct: 338 GYIAGDRGKVLAMDYSVAENI-AFLYYTASKTLLLRRSRLEDLFRRL-VERFRLVARSPW 395 Query: 139 T----LSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQLSNKGIGILI 194 T LSGG +++ + + L+ P G+D ++ ++++L+ +G GIL+ Sbjct: 396 TPVGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTSFVRNLLSELARQGAGILL 455 Query: 195 TDHNVRDTLEITHRSYIINLGEI 217 ++ + LE++ R Y+++ G + Sbjct: 456 VSTDLDEILELSDRIYVMSGGRV 478 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 97.8 bits (242), Expect = 2e-22 Identities = 75/235 (31%), Positives = 118/235 (50%), Gaps = 11/235 (4%) Query: 1 MSEHVLGVDGLVKRFGKKTV-------VKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVG 53 M+ ++ GLVKRF + +K VSF + GE+ LGPNGAGKTT ++ Sbjct: 1 MAGAMIEARGLVKRFVSGRIRRRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILST 60 Query: 54 FLTPTEGRVYFDFHDISRLPMYKRARLGISYLPQEPSIFRRLTVEENVWAILETRKDLTR 113 L P G D+ + R R+G+ L E + +LT EN++ Sbjct: 61 LLDPDGGEARVAGFDVVKERWEVRKRIGVM-LSVERGFYWKLTGRENLYYFGRIYGIPQG 119 Query: 114 EEKQRTLEELLAEMGITHI--RKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGID 171 E K R ++E+L +G+T + + +S G + R +AR L P L+LDEP G+D Sbjct: 120 ELKSR-IKEVLDLVGLTDLGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLD 178 Query: 172 PIAVYEIKQIIAQLSNKGIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDL 226 P + I+ +I L+++G I IT HN+ + I+ R II G I ++G+ ++L Sbjct: 179 PASARTIRGVIRSLASEGRTIFITTHNMVEAEMISDRVGIIIGGRIAMEGTPDEL 233 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 97.4 bits (241), Expect = 3e-22 Identities = 64/228 (28%), Positives = 119/228 (52%), Gaps = 18/228 (7%) Query: 6 LGVDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFD 65 + L KRFG++ ++V F +G ++G+LGPNGAGKTT+ ++G + P+ G + + Sbjct: 5 VNASALSKRFGQRYAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVE 63 Query: 66 FHDISRLPMYKRARLGISYLPQEPSIFRRLTVEENVWA----ILETRKDL---TREEKQR 118 + R P +++ I Y+P+ P + +W +LET L T E + Sbjct: 64 GVN-PRSPGFEKLLPRIGYVPELPVV--------PLWTTPCILLETLARLEGYTSVEARV 114 Query: 119 TLEELLAEMGITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEI 178 E L +G+ + LS G R+R +A+A L+LDEP++G+DP VY + Sbjct: 115 RAREALEVVGLAGECETPIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRV 174 Query: 179 KQIIAQLSNKGIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDL 226 ++++ ++ +G ++++ H +R+ +I ++ + L GS E+L Sbjct: 175 RELLRTVAREGATVIVSSHILRELEDIATHVLVLKTDQ-LFYGSIEEL 221 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 97.4 bits (241), Expect = 3e-22 Identities = 71/250 (28%), Positives = 133/250 (53%), Gaps = 23/250 (9%) Query: 8 VDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFL-----TPTEGRV 62 V GL K ++K +SF+ + G V ++GP+G+GK+T+ ++ + EG V Sbjct: 8 VSGLNVWITDKHILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEV 67 Query: 63 YFDFHDISRLPMYK-RARLGISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQRTLE 121 + + ++ + Y R G+ + QEP+ F +T+ ENV AI L + +K+ L+ Sbjct: 68 WINNMNVMKEDPYNIRRYTGMVF--QEPNPFPHMTIYENV-AIGPKLHGLAKNKKE--LD 122 Query: 122 ELLA-EMGITHIRKQKA-------YTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPI 173 E++ + + H+ + + LSGG+R+R +ARALA++P LLLDEP A IDP+ Sbjct: 123 EIVEWALKMAHLWDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPV 182 Query: 174 AVYEIKQIIAQLSNKGIG-ILITDHNVRDTLEITHRSYIINLGEILVQGSREDLV---NN 229 + +I+Q I + + + + ++I H + I+ + + G ++ G ++LV + Sbjct: 183 STVKIEQSIVEYAKEEMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKELVLRPRH 242 Query: 230 EIARRIYLGE 239 E+ ++ GE Sbjct: 243 ELTKKFLGGE 252 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 95.1 bits (235), Expect = 1e-21 Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 10/222 (4%) Query: 10 GLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDFHDI 69 G+ K + V++ VS ++ GE+ L G NGAGKTT ++VG L+ G D Sbjct: 19 GVAKSVKGRPVLRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRDSGEARVLGVD- 77 Query: 70 SRLPM---YKRARLGISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQRTLEELLAE 126 P ++R + + YLP++ S++ RLT EN+ + R + + +E + Sbjct: 78 ---PWGGGFERVKGEVGYLPEDASVYERLTGMENI--LFYARLYSGWRDVEELVENAVFY 132 Query: 127 MGITHIR-KQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQL 185 G++ ++A S G +RR + L +P ++LDEP +G+DPIA IK+I+ L Sbjct: 133 SGLSREDLARRAGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGL 192 Query: 186 SNKGIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDLV 227 S +G IL+T H++ EI R II+ G + G LV Sbjct: 193 SREGRAILVTTHDLALAEEIADRVTIIHGGSTVASGPPYRLV 234 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 90.5 bits (223), Expect = 4e-20 Identities = 56/196 (28%), Positives = 105/196 (53%), Gaps = 8/196 (4%) Query: 27 EMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDFHDISRLPMYKRARLGISYLP 86 E+R GEVVG+ G G G+ +F ++VG P +GR+ D++R P R RLG+ +P Sbjct: 276 EVRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRLGLGVIP 335 Query: 87 QE---PSIFRRLTVEENVWAILETRKD---LTREEKQRTLEELLAEMGITHIR-KQKAYT 139 +E ++ ++ N+ + T +D + ++ EE++ +MGI + +Q Sbjct: 336 EERLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGIKAVSPRQMVDE 395 Query: 140 LSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQLSNKGIGILITDHNV 199 LSGG +R +AR L ++P L+ P AG+D + +++ S +G G+L+ D ++ Sbjct: 396 LSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRMSSERG-GVLVIDEDL 454 Query: 200 RDTLEITHRSYIINLG 215 L ++++ Y+ + G Sbjct: 455 DFLLRVSNKIYVASGG 470 Score = 79.7 bits (195), Expect = 6e-17 Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 1/202 (0%) Query: 21 VKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDFHDISRLPMYKRARL 80 +K V+ G V LLG NGAGKTT+ ++G + P +GR+ D +++ R Sbjct: 21 LKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPKGPGDSLRS 80 Query: 81 GISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQRT-LEELLAEMGITHIRKQKAYT 139 GI Q P ++ + E++ L + RT L E +G+ + Sbjct: 81 GIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAEASEALGLNIDPDRYLGE 140 Query: 140 LSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQLSNKGIGILITDHNV 199 + ER+R E+ +ALA+ +LLDEP + P + + +L+ G +L+ H + Sbjct: 141 MGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAASGAAVLLVTHRI 200 Query: 200 RDTLEITHRSYIINLGEILVQG 221 + +E R I+ G + +G Sbjct: 201 GEAMEHADRLVILRKGVKVYEG 222 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 87.4 bits (215), Expect = 3e-19 Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 8/217 (3%) Query: 21 VKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYF--DFHDISRLPMYKRA 78 V V +R GEV+ ++G +G GKTT+ +VG P++G +Y+ + RL +R Sbjct: 38 VDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLTPHRLARDRRL 97 Query: 79 RLGISYLPQEP--SIFRRLTVEENVWAILETRKDLTREEKQRTLEELLAEMGITHIRK-- 134 R + + Q+P S+ + V + V L EE +R E+L +G+T R+ Sbjct: 98 RRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETVGLTPGREFY 157 Query: 135 -QKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQLSNK-GIGI 192 +K + LSGG+R+R IAR L + P ++ DEP + ID I +I + G I Sbjct: 158 WRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTGATI 217 Query: 193 LITDHNVRDTLEITHRSYIINLGEILVQGSREDLVNN 229 ++ H++ + R ++ LG+I+ G ++ N Sbjct: 218 VLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVIEN 254 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 86.7 bits (213), Expect = 5e-19 Identities = 62/237 (26%), Positives = 119/237 (50%), Gaps = 16/237 (6%) Query: 1 MSEHVLGVDGLVKRF----GKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLT 56 M++ +L V+ L F G V VSF +R GEV+G+ G +G+GK+T+ + ++G + Sbjct: 1 MAQELLVVEDLKTYFYTLRGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVP 60 Query: 57 P----TEGRVYFDFHDISRLPMYKRAR------LGISYLPQEPSIFRRLTVEENVWAILE 106 P GR+ D D++ + + R + + + + TV + +L+ Sbjct: 61 PPGRIVGGRIMIDGMDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQ 120 Query: 107 TRKDLTREEKQRTLEELLAEMGI-THIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDE 165 + + R E ++ + ELL +G+ I + + LSGG+++R IA ALA+ P ++ DE Sbjct: 121 IHRGVGRHEARQRVYELLESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADE 180 Query: 166 PFAGIDPIAVYEIKQIIAQLS-NKGIGILITDHNVRDTLEITHRSYIINLGEILVQG 221 P +D + +I ++ +L+ K + I++ H++ E+ I+ G+I G Sbjct: 181 PTTALDVVVQAQILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEYG 237 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 85.1 bits (209), Expect = 1e-18 Identities = 74/237 (31%), Positives = 114/237 (48%), Gaps = 21/237 (8%) Query: 8 VDGLVKRFGKKT-VVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDF 66 ++G+ R+ V++ VSF + G +V LLGPNG+GKTT+ ++ G + P+ GRV Sbjct: 8 LEGVEARYNTSPPVLRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRV---- 63 Query: 67 HDISRLPMYKRARLGISYLPQEPSIFRRLTVEENVWAILETRKDLTREEK--QRTLEELL 124 ++ P R R + Y P P + RL E L R ++ +R EE+L Sbjct: 64 -EVCGSPP-GRVRRMLGYAPASPEVDPRLKAVE---VALLYRYGVSEGVAWGRRDWEEVL 118 Query: 125 A---EMGITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQI 181 A EMG+ + ++ LS G+RR +A LA RP LLDEP + +D + + + Sbjct: 119 AALGEMGVGELAWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLV 178 Query: 182 IAQLSNKGIGILITDHNVRDTLEITHRSYIINLGEILV--QGSREDLVNNEIARRIY 236 + L + I+ T H D L +I L E L+ QG E +V E +Y Sbjct: 179 LRSLRGRAT-IVYTTH---DPLAAMAADSVIMLREGLLHAQGPPEAVVTPETIEEVY 231 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 84.7 bits (208), Expect = 2e-18 Identities = 62/204 (30%), Positives = 111/204 (54%), Gaps = 18/204 (8%) Query: 8 VDGLVKRF---GKKTV-VKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVY 63 V+G+VK + G++ V +++VS + GEV+ ++GP+G+GKTT+ ++ G P GRV Sbjct: 13 VEGVVKIYESRGERIVALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAGRVI 72 Query: 64 FDFHDIS-----RLPMYKRARLGISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQR 118 D ++S L ++ R+G Y+ Q+ ++ LT EN+ + R Q Sbjct: 73 VDGFEVSSAGGEELRRFRLERVG--YVFQQHNLIPTLTALENILLPMALAGKANRLRGQ- 129 Query: 119 TLEELLAEMGITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYE- 177 ELL +G+ ++ LSGGE++R +A ALA P ++ DEP +D IA E Sbjct: 130 ---ELLRRVGLGGKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELD-IATGER 185 Query: 178 -IKQIIAQLSNKGIGILITDHNVR 200 ++ ++ + ++G +++T H+ R Sbjct: 186 IVRILLEEAHSRGKTVVLTTHDPR 209 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 84.7 bits (208), Expect = 2e-18 Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 7/214 (3%) Query: 5 VLGVDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYF 64 V+ V+GLVKR+G ++ VSF + +GEV G LGPNGAGKTT +++GF PT G Sbjct: 4 VIEVEGLVKRYGSVEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARV 63 Query: 65 DFHDISRLPMYKRARLGISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQRTLEELL 124 ++ P R + Y+P E + ++ +L+ L + + ELL Sbjct: 64 FGVELYN-PGASGVRRRVGYVPGEFEFYGGVSGGR----MLDYWCRLVGGCSRGVVRELL 118 Query: 125 AEMGITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQ 184 + R Y S G ++ + A + P +++DEP G+DP+A + + Sbjct: 119 EAFPLPLERAVGTY--SRGMKQMLALVMAFSHEPDLVVMDEPTTGLDPLARGRVLDFVRS 176 Query: 185 LSNKGIGILITDHNVRDTLEITHRSYIINLGEIL 218 + +G+ + + H + + + R ++ G ++ Sbjct: 177 KAREGVTVFFSSHVLSEVQRVADRVGLLRSGVLV 210 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 81.3 bits (199), Expect = 2e-17 Identities = 67/263 (25%), Positives = 118/263 (44%), Gaps = 42/263 (15%) Query: 11 LVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDF---- 66 L K G V VS ++ GE++G++G +G+GKTT+ ++G P G V+ D Sbjct: 20 LKKVIGYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFTGHVFIDIDKGE 79 Query: 67 -------------------HDISRLPM--------------YKRARLGISYLPQEP--SI 91 DI R YK+ R + + Q+P S+ Sbjct: 80 LEEAVSIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKVQMVQQDPYSSL 139 Query: 92 FRRLTVEENVWAILETRK-DLTREEKQRTLEELLAEMGI-THIRKQKAYTLSGGERRRTE 149 R+ V E + + + + E +R + E+L +G+ + Y LSGG+R+R Sbjct: 140 NPRMKVGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPYELSGGQRQRVA 199 Query: 150 IARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQLSNK-GIGILITDHNVRDTLEITHR 208 IARALA+ P L+LDEP + +D +I +++ +L K G+ L+ H++ ++ Sbjct: 200 IARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITHDISVVRYMSSS 259 Query: 209 SYIINLGEILVQGSREDLVNNEI 231 ++ G+I+ + L N + Sbjct: 260 VVVMYSGKIMESAPKHILFTNPL 282 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 79.3 bits (194), Expect = 8e-17 Identities = 59/213 (27%), Positives = 112/213 (52%), Gaps = 9/213 (4%) Query: 21 VKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDFHDISRLPM--YKRA 78 V +V+ + G+ +GL+G +G+GKTT +++ PT GR++FD D+ +L K Sbjct: 52 VDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGIDVMKLRGRGLKEF 111 Query: 79 RLGISYLPQEP--SIFRRLTVEENVWAILETRKDLTREEKQRTLEELLAEMGI--THIRK 134 R + Q+P S+ R T+ + ++ + + Q + LL ++G+ TH+ + Sbjct: 112 RRRAQIIFQDPYGSLNPRKTIFNLIAEPIKVH-GIKVGDLQEYIVSLLYQVGLNETHLYR 170 Query: 135 QKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQLSNK-GIGIL 193 + SGG+R+R IAR LA++P F++LDEP + +D +I ++ L K + L Sbjct: 171 YP-HEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTYL 229 Query: 194 ITDHNVRDTLEITHRSYIINLGEILVQGSREDL 226 H++ ++ ++ LG+I+ G E++ Sbjct: 230 FISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEV 262 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 78.6 bits (192), Expect = 1e-16 Identities = 60/242 (24%), Positives = 116/242 (47%), Gaps = 22/242 (9%) Query: 4 HVLGVDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTP----TE 59 H + G+V+ V VS + GE + ++G +G+GK+T+ + + P Sbjct: 12 HYYTLTGIVR------AVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGRIVG 65 Query: 60 GRVYFDFHDI-----SRLPMYKRARLGISYLPQEPSIFR---RLTVEENVWAILETRKDL 111 GR+ + D+ L Y+ +G+ + Q+P+ + R + ++LE Sbjct: 66 GRILYSGVDLLSLAGEELRRYRGREIGMVF--QDPTAYLDPYRTVGSQIAESLLEHGLAS 123 Query: 112 TREEKQRTLEELLAEMGITHIRKQK-AYTLSGGERRRTEIARALAIRPAFLLLDEPFAGI 170 + E + + L +GI R + LSGG+R+R IA A+A+ P L+ DEP + Sbjct: 124 SGSEAESMAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTTAL 183 Query: 171 DPIAVYEIKQIIAQL-SNKGIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDLVNN 229 D + +I ++ +L +G+ +++ H++ E + R ++ GE++ G ED+V+N Sbjct: 184 DVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDVVSN 243 Query: 230 EI 231 I Sbjct: 244 PI 245 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 75.9 bits (185), Expect = 9e-16 Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 10/191 (5%) Query: 5 VLGVDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYF 64 +L ++ + K G + V++ VS + GE V + G NG+GKTT+ + G P+ GRV + Sbjct: 4 LLRLENVWKMLGGRWVLRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRVSW 63 Query: 65 DFHDISRLPMYKRARLGISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQRTLEELL 124 P R +G Y+ P ++ LTV ENV + E Sbjct: 64 G------CPRGPRGCVG--YVGHTPMVYGDLTVWENVEFFSSLHGGSLGDYPLAA--EAW 113 Query: 125 AEMGITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQ 184 +G+ A LS G RRR ++ RAL P LLLDE F G+D A + +++ Sbjct: 114 RLLGLEKYGSHLASQLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEALSRLLRL 173 Query: 185 LSNKGIGILIT 195 +G+ +L+T Sbjct: 174 ALGEGLALLMT 184 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 72.4 bits (176), Expect = 1e-14 Identities = 67/247 (27%), Positives = 106/247 (42%), Gaps = 30/247 (12%) Query: 13 KRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFD------- 65 +RF K V VSF + GEV L+G +G GKTT ++ + T GRV+F Sbjct: 44 QRFVK--AVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLE 101 Query: 66 -------------FHDISRLPMYK----RARLGISYLPQEPSIFRRLTVE---ENVWAIL 105 F D+ +P K R L I Y S+ R T++ E+ I Sbjct: 102 ELERRGVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQDPYGSLNPRFTIKRILEDPLLIH 161 Query: 106 ETRKDLTREEKQRTLEELLAEMGITHIRKQKAYTLSGGERRRTEIARALAIRPAFLLLDE 165 REE + E + + + + LSGG+R+R IARA + P+ ++ DE Sbjct: 162 SIGNAREREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADE 221 Query: 166 PFAGIDPIAVYEIKQIIAQLSNK-GIGILITDHNVRDTLEITHRSYIINLGEILVQGSRE 224 P + +D EI +++ K G +L H++ I R ++ LG+I+ G Sbjct: 222 PVSMLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDAR 281 Query: 225 DLVNNEI 231 ++ I Sbjct: 282 RIIERPI 288 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 71.2 bits (173), Expect = 2e-14 Identities = 63/206 (30%), Positives = 95/206 (46%), Gaps = 14/206 (6%) Query: 20 VVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDFHDISRLPMYKRAR 79 V++ VS E G + L GP G GK+TI + G T R+Y + L AR Sbjct: 19 VLRGVSLEAPRG-ITLLAGPTGGGKSTILRVAAGLAT----RIYGGY-----LRGEVEAR 68 Query: 80 LGISYLPQEPSIF-RRLTVEENVWAILETRKDLTREEKQRTLEELLAEMGITHIRKQKAY 138 +PQ+ +F LT E + E L E +R L E+GI + ++ Sbjct: 69 GKPVLVPQDYDLFILSLTPREELEYCYEA-SGLPPWEARREAVRLAEELGIEDLLDRRVS 127 Query: 139 TLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQLSNKGIGILITDHN 198 LS GER+R IA ALA+ LL+DEP A DP+ V + +++ +L + G+++ +H Sbjct: 128 KLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVESLIRLLRRLDVE--GVVVAEHR 185 Query: 199 VRDTLEITHRSYIINLGEILVQGSRE 224 V L Y++ G G E Sbjct: 186 VHYLLPAASSVYLVYDGRAKQLGPGE 211 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 71.2 bits (173), Expect = 2e-14 Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 19/198 (9%) Query: 31 GEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDFHDISRLPMYKRARLGISYLPQ--E 88 GEV+G+ GPNG GKTT + G L P EG VY D L +SY PQ Sbjct: 383 GEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVYPYVED-----------LRVSYKPQYIS 431 Query: 89 PSIFRRLTVEENVWAILETRKDLTREEKQRTLEELLAEMGITHIRKQKAYTLSGGERRRT 148 P TVE+ +L+ EL+ M + + +++ TLSGGE ++ Sbjct: 432 PESLPDATVEQ----VLKAANPAILAPGSWLNLELVKRMRLDKLLERRVRTLSGGELQKV 487 Query: 149 EIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQL-SNKGIGILITDHNVRDTLEITH 207 +A ALA LLDEP A +D + + I ++ + L+ +H++ ++ Sbjct: 488 AVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALVVEHDLMILDYVSD 547 Query: 208 RSYIINLGEILVQGSRED 225 R ++ GE V+G +D Sbjct: 548 RIMLVT-GEPGVRGHVDD 564 Score = 56.2 bits (134), Expect = 7e-10 Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 16/182 (8%) Query: 29 RTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYF---DFHDI------SRLPMYKRAR 79 R G+VVGLLG NG GKTT ++ G L P GRV ++ +I S L Y R Sbjct: 104 REGQVVGLLGRNGTGKTTALRILAGELKPNLGRVEGGEPEWDEILKRFRGSELQTYFR-- 161 Query: 80 LGISYLPQEPSIFRRLTVEENVWAILETR-KDLTREEKQRTLE-ELLAEMGITHIRKQKA 137 + + + ++ E V L+ R +DL + +R + EL ++G+ + + Sbjct: 162 ---KLVDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGVALELAEQVGLDKVFDRDV 218 Query: 138 YTLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQLSNKGIGILITDH 197 LSGGE ++ I L+ + DEP + +D + ++IA + G +++ +H Sbjct: 219 RQLSGGELQKMLIVAVLSRDANVYIFDEPSSYLDIRERMRMARLIAGAARPGAYVMVVEH 278 Query: 198 NV 199 ++ Sbjct: 279 DL 280 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 64.3 bits (155), Expect = 3e-12 Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 28/205 (13%) Query: 21 VKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRVYFDFHDISRLPMYKRARL 80 ++DV+ + G V +LG NG+GKTT+ + L P G V P A L Sbjct: 7 LRDVTLSIPRG-VTAILGANGSGKTTLLKLAARLLKPDRGSV--------EGPRRVGAAL 57 Query: 81 GISYLPQEPSIFRRLTVEENVWAILETRKDLTREEKQR-TLEELLAEMGITHIRKQKAYT 139 YL F TV E DL R R +LL E G+ + ++ YT Sbjct: 58 QNPYLG-----FLGPTVAE----------DLARTAGGRGEALKLLREAGLEYASERSPYT 102 Query: 140 LSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQIIAQLSNKGIGILITDHNV 199 LS GE R + A++ P +++DEP +G+D + +IA+L G+ +L+ H++ Sbjct: 103 LSMGEARILSVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLIARL---GVPVLVAGHDI 159 Query: 200 RDTLEITHRSYIINLGEILVQGSRE 224 + + I+ G + V G E Sbjct: 160 DFAAAVAGWAVILRDGRVRVSGDME 184 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 64.3 bits (155), Expect = 3e-12 Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 18/198 (9%) Query: 3 EHVLGVDGLVKRFGKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTPTEGRV 62 + VL G +R ++ V+KDV+ + G V ++G +GAGKTT+ M++G G Sbjct: 438 QDVLRAFGAERRVVERYVLKDVNITVNPGSVAAVVGASGAGKTTLLRMILGKALGIGGEG 497 Query: 63 YFDFHDISRLPMYKRARLGISYLP--QEPSIFRRLTVEENVWAILETRKDLTREEKQRTL 120 Y + ++P +A + LP EPS F T+ E+V ++ Sbjct: 498 YRPDSGVVKIPTNTKA---AALLPGELEPS-FGGETLLEHV---------ASKLGDPGAA 544 Query: 121 EELLAEMGITHIRKQKAY--TLSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEI 178 E+L+ +G+ +A LS G++ R ++A LA RP L++DE A +DP+ I Sbjct: 545 VEVLSSVGLGDAIFFRASFGELSTGQKERAKLASLLAERPNLLVIDEFMAHLDPLTARRI 604 Query: 179 KQIIAQLS-NKGIGILIT 195 + + +L+ +KGI ++++ Sbjct: 605 ARKLGKLARSKGITLIVS 622 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 63.5 bits (153), Expect = 5e-12 Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 19/230 (8%) Query: 21 VKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLTP----TEGRVYF--------DFHD 68 ++DVSF + GE L+G G GK+ + + P EG++Y+ D Sbjct: 29 IEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGRIVEGKIYYYPEPGRRVDIMS 88 Query: 69 ISRLPMYKRARLGISYLPQEPSI----FRRLTVEENVWAILETRKDLTREEKQRTLEELL 124 + + + I+Y+ Q+PS + + + R RE +R + L Sbjct: 89 LDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETMLAHGRVRSLREGVRRAVGVLK 148 Query: 125 AEMGITHIRKQKAYT--LSGGERRRTEIARALAIRPAFLLLDEPFAGIDPIAVYEIKQII 182 + ++ K+Y LSGG ++R I +L+ RP L+ DEP +D +I ++ Sbjct: 149 TVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLIADEPTTALDVTIQAQIMDLL 208 Query: 183 AQLSNK-GIGILITDHNVRDTLEITHRSYIINLGEILVQGSREDLVNNEI 231 QL + G+ +L+ HN+ E R ++ G I+ + ++L +N + Sbjct: 209 TQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEEAPVDELFSNPL 258 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 55.8 bits (133), Expect = 1e-09 Identities = 56/238 (23%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 1 MSEHVLGVDGLVKRF----GKKTVVKDVSFEMRTGEVVGLLGPNGAGKTTIFYMVVGFLT 56 MSE VL + L + G + V ++ GE++ ++G +G GK+T+ + L Sbjct: 1 MSEIVLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARILP 60 Query: 57 PT----EGRVYFDFH-----DISRLPMYKRARLG---ISYLPQEPSIFRRLT--VEENVW 102 +G + + D+ RL + ++ +S + Q+PS V++ V Sbjct: 61 SNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVT 120 Query: 103 AILETRKDLTREEKQRTLEELLAEMGITHIRKQK-AYTLSGGERRRTEIARALAIRPAFL 161 + K + Q L++L+ M H+ +K + LSGG ++R IA +L RP + Sbjct: 121 DHVSGEKRRVEKIAQEILKKLM--MPAPHMILEKYPHELSGGMKQRIVIAASLITRPRII 178 Query: 162 LLDEPFAGIDPIAVYEIKQIIAQLSNK-GIGILITDHNVRDTLEITHRSYIINLGEIL 218 + DEP +D +I +++++L + I++ HN+ EI R ++ G ++ Sbjct: 179 IADEPTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVV 236 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 254,101 Number of Sequences: 1700 Number of extensions: 11737 Number of successful extensions: 153 Number of sequences better than 1.0e-04: 41 Number of HSP's better than 0.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 48 length of query: 243 length of database: 492,079 effective HSP length: 74 effective length of query: 169 effective length of database: 366,279 effective search space: 61901151 effective search space used: 61901151 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719863|ref|YP_003875395.1| RNA polymerase sigma-54 factor [Spirochaeta thermophila DSM 6192] (472 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.317 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 439,206 Number of Sequences: 1700 Number of extensions: 18114 Number of successful extensions: 60 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 0 length of query: 472 length of database: 492,079 effective HSP length: 80 effective length of query: 392 effective length of database: 356,079 effective search space: 139582968 effective search space used: 139582968 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719864|ref|YP_003875396.1| hypothetical protein STHERM_c21950 [Spirochaeta thermophila DSM 6192] (104 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.315 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,472 Number of Sequences: 1700 Number of extensions: 2953 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 104 length of database: 492,079 effective HSP length: 64 effective length of query: 40 effective length of database: 383,279 effective search space: 15331160 effective search space used: 15331160 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719865|ref|YP_003875397.1| HPr kinase [Spirochaeta thermophila DSM 6192] (328 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 331,619 Number of Sequences: 1700 Number of extensions: 15520 Number of successful extensions: 53 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 0 length of query: 328 length of database: 492,079 effective HSP length: 77 effective length of query: 251 effective length of database: 361,179 effective search space: 90655929 effective search space used: 90655929 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719866|ref|YP_003875398.1| phosphocarrier protein HPr [Spirochaeta thermophila DSM 6192] (88 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.131 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,411 Number of Sequences: 1700 Number of extensions: 2306 Number of successful extensions: 3 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 88 length of database: 492,079 effective HSP length: 57 effective length of query: 31 effective length of database: 395,179 effective search space: 12250549 effective search space used: 12250549 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719867|ref|YP_003875399.1| hypothetical protein STHERM_c21980 [Spirochaeta thermophila DSM 6192] (168 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 158,660 Number of Sequences: 1700 Number of extensions: 6371 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 168 length of database: 492,079 effective HSP length: 71 effective length of query: 97 effective length of database: 371,379 effective search space: 36023763 effective search space used: 36023763 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719868|ref|YP_003875400.1| nitrogen regulation protein NtrY [Spirochaeta thermophila DSM 6192] (584 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 480,148 Number of Sequences: 1700 Number of extensions: 18320 Number of successful extensions: 52 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 0 length of query: 584 length of database: 492,079 effective HSP length: 82 effective length of query: 502 effective length of database: 352,679 effective search space: 177044858 effective search space used: 177044858 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719869|ref|YP_003875401.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] (456 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 447,843 Number of Sequences: 1700 Number of extensions: 20531 Number of successful extensions: 103 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103 Number of HSP's gapped (non-prelim): 0 length of query: 456 length of database: 492,079 effective HSP length: 80 effective length of query: 376 effective length of database: 356,079 effective search space: 133885704 effective search space used: 133885704 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719870|ref|YP_003875402.1| transcriptional repressor [Spirochaeta thermophila DSM 6192] (201 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.140 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 229,943 Number of Sequences: 1700 Number of extensions: 11702 Number of successful extensions: 31 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 0 length of query: 201 length of database: 492,079 effective HSP length: 72 effective length of query: 129 effective length of database: 369,679 effective search space: 47688591 effective search space used: 47688591 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719871|ref|YP_003875403.1| hypothetical protein STHERM_c22020 [Spirochaeta thermophila DSM 6192] (326 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 295,171 Number of Sequences: 1700 Number of extensions: 11879 Number of successful extensions: 45 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45 Number of HSP's gapped (non-prelim): 0 length of query: 326 length of database: 492,079 effective HSP length: 77 effective length of query: 249 effective length of database: 361,179 effective search space: 89933571 effective search space used: 89933571 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719872|ref|YP_003875404.1| UvrABC system protein C [Spirochaeta thermophila DSM 6192] (612 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.141 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 588,483 Number of Sequences: 1700 Number of extensions: 25917 Number of successful extensions: 83 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83 Number of HSP's gapped (non-prelim): 0 length of query: 612 length of database: 492,079 effective HSP length: 82 effective length of query: 530 effective length of database: 352,679 effective search space: 186919870 effective search space used: 186919870 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719873|ref|YP_003875405.1| fibronectin type III domain-containing protein [Spirochaeta thermophila DSM 6192] (491 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 544,383 Number of Sequences: 1700 Number of extensions: 25617 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 0 length of query: 491 length of database: 492,079 effective HSP length: 81 effective length of query: 410 effective length of database: 354,379 effective search space: 145295390 effective search space used: 145295390 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719874|ref|YP_003875406.1| hypothetical protein STHERM_c22050 [Spirochaeta thermophila DSM 6192] (839 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 570,777 Number of Sequences: 1700 Number of extensions: 22803 Number of successful extensions: 68 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 0 length of query: 839 length of database: 492,079 effective HSP length: 85 effective length of query: 754 effective length of database: 347,579 effective search space: 262074566 effective search space used: 262074566 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719875|ref|YP_003875407.1| hypothetical protein STHERM_c22070 [Spirochaeta thermophila DSM 6192] (163 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431893|ref|NP_148641.2| phosphohistidine phosphatase [Aero... 77 2e-16 >gi|118431893|ref|NP_148641.2| phosphohistidine phosphatase [Aeropyrum pernix K1] Length = 155 Score = 77.0 bits (188), Expect = 2e-16 Identities = 60/144 (41%), Positives = 75/144 (52%), Gaps = 6/144 (4%) Query: 1 MKRILLCRHAKAEKARPGVDDRERVLEDRGVQDAARVATLLAEEPVERVYASSAPRAAET 60 M I+ RH KAE PGVDDRER L + G D A LL V R+ S RA +T Sbjct: 1 MTLIVFFRHGKAEPKMPGVDDRERRLTEEGAADVECAARLLRGRGVVRILTSPYRRAIQT 60 Query: 61 ARLLFPGREVEY--VDALYPGSGEGYLRFIQGLPDEYGYVALVGHNPAMEECVRFLVGRE 118 A +L ++EY V+ L P SG + + L GYV LVGHNP ME+ V L G Sbjct: 61 AEILARTLDLEYSVVEWLAPDSGIS-VEDLPRLGVGDGYV-LVGHNPWMEDTVTELAGGF 118 Query: 119 VVLKTSWCALVVCEVEGWRECDGK 142 + LK A+V EVE ++ GK Sbjct: 119 LELKAGGFAVV--EVESFKAGGGK 140 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 196,036 Number of Sequences: 1700 Number of extensions: 9221 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 1 length of query: 163 length of database: 492,079 effective HSP length: 70 effective length of query: 93 effective length of database: 373,079 effective search space: 34696347 effective search space used: 34696347 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719876|ref|YP_003875408.1| hypothetical protein STHERM_c22080 [Spirochaeta thermophila DSM 6192] (281 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431712|ref|NP_148355.2| thymidylate synthase [Aeropyrum pe... 54 3e-09 >gi|118431712|ref|NP_148355.2| thymidylate synthase [Aeropyrum pernix K1] Length = 325 Score = 54.3 bits (129), Expect = 3e-09 Identities = 70/249 (28%), Positives = 100/249 (40%), Gaps = 52/249 (20%) Query: 25 VRLVDYMGSDERIVQ-AARVSYGKGTKSYR------EDKALIDYLLRNEHTSPFEQVVFT 77 VRL++Y G ERIV A++VS + E + I R +H SP+E V+T Sbjct: 14 VRLLEYTGDGERIVAVASKVSLSRSPAERLLAIGEDEVETWILETFRRQHFSPWEHSVYT 73 Query: 78 FHAK-MPIFVARQWVRHRTARINEISGRYSVLQEEFYVPSPEVLAPQS---------ASN 127 F + + + Q VRHR A ++S RYS E Y+ + A +S A Sbjct: 74 FMVEGLSRVASHQLVRHRVASYTQLSHRYS----EGYLREAALKACESIGLDCPSKPAET 129 Query: 128 KQGR-XXXXXXXXXXXXIRKEMAAFQE-------------------------DAYRR--- 158 + GR ++ A + +AY R Sbjct: 130 EGGRKAAYRLYSQALERAARDFGASERFAIAAKAFVIPPTILARGDGGDGVVEAYLRSAA 189 Query: 159 -YEGLLERGVARELARINLPLSLYTEWYWQMDLHNLFR-FLWLRLDPHAQYEIREYAKVI 216 Y LL RG RE AR LP +L T M+ L + F LR+ AQ+EIR A ++ Sbjct: 190 IYYSLLSRGARREDARYILPDALRTRIVVTMNARELIQVFFPLRMCTRAQWEIRHIAWLL 249 Query: 217 LEIVRRVCP 225 + RV P Sbjct: 250 WRELSRVHP 258 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 284,710 Number of Sequences: 1700 Number of extensions: 11785 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 2 length of query: 281 length of database: 492,079 effective HSP length: 76 effective length of query: 205 effective length of database: 362,879 effective search space: 74390195 effective search space used: 74390195 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719877|ref|YP_003875409.1| hypothetical protein STHERM_c22100 [Spirochaeta thermophila DSM 6192] (402 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.139 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 389,367 Number of Sequences: 1700 Number of extensions: 16724 Number of successful extensions: 44 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 0 length of query: 402 length of database: 492,079 effective HSP length: 79 effective length of query: 323 effective length of database: 357,779 effective search space: 115562617 effective search space used: 115562617 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719878|ref|YP_003875410.1| hypothetical protein STHERM_c22090 [Spirochaeta thermophila DSM 6192] (405 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.141 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 474,656 Number of Sequences: 1700 Number of extensions: 24064 Number of successful extensions: 39 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 0 length of query: 405 length of database: 492,079 effective HSP length: 79 effective length of query: 326 effective length of database: 357,779 effective search space: 116635954 effective search space used: 116635954 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719879|ref|YP_003875411.1| hypothetical protein STHERM_c22110 [Spirochaeta thermophila DSM 6192] (480 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431864|ref|NP_148594.2| MatE efflux family protein [Aeropy... 114 5e-27 gi|118431584|ref|NP_148157.2| MatE efflux family protein [Aeropy... 113 1e-26 >gi|118431864|ref|NP_148594.2| MatE efflux family protein [Aeropyrum pernix K1] Length = 475 Score = 114 bits (285), Expect = 5e-27 Identities = 99/376 (26%), Positives = 170/376 (45%), Gaps = 10/376 (2%) Query: 32 LAFPIAVQNLLFSVLNMVDTFMIGQLGTEEVAGVALANQWYFVFFLFVFAIGSGAAIFTA 91 LA PI LL + VD +G++ TE++A A A+ ++F I + + + Sbjct: 25 LATPIVAARLLAATQESVDAIFLGRVSTEDLAAPAAASPLLWLFAGLGIGINTTLSALVS 84 Query: 92 QLWGKGDAEGVRRFAGIALIFALFIGAVFSIVALLFPSLILRVFTDDGEVIALGLSYFRW 151 Q G D +R+A L L +GA ++ +L + + G + + L+Y Sbjct: 85 QAIGARDYASAQRYASKLLGATLMLGAASALAIILTAETVFILQGFQGRSLEVALAYTLV 144 Query: 152 IWISYPFTAFSFLYGIVLRSTGEVALPFRASTIALVMNTVGNYLLIFGPGPFPRLGVEGA 211 + PF F + V+ ++G+ PF+ S ++ ++N + + +LIFG P LG GA Sbjct: 145 EAVGMPFMLALFYFNAVMAASGDTRTPFKVSALSSILNVILDPILIFGLILLPPLGAVGA 204 Query: 212 AIATVIARIFEAGYVLIAVYLRRTVLAAGLRSLLSFSGREVRDYLER-ALPVVGSEVGWA 270 A+ATV+AR A V IA YL A G R S R++ ++ R PV + + Sbjct: 205 AVATVLAR---AAAVSIAFYLLLRG-APGFRVKPSMPDRQLIGHILRIGGPVSLQRLVVS 260 Query: 271 LGVSAYQAVFARVSTEAVAAYTLANTLFNFAVVVFVGTSNACSIMIGNVLGKGRVRRAQE 330 +G + AR+ VAAY ++ + + G + A + ++G LG + RA Sbjct: 261 MGFLVMMGIVARLGAPVVAAYNVSLVIIHIVQSATFGFNIATATVVGQNLGASNISRAVR 320 Query: 331 YAVSFSLWAVLLGALS-GLFLIAGXXXXXXXXRISPLAKEFLRASLV-VVGVAMPWKIFN 388 A ++ A++ G LS G I G S +F ++ +V + MP+ + Sbjct: 321 AA--YTGVALVFGLLSIGAVAIVGGRSMLVSLFTSIEEVQFYAERMISIVALGMPF-LGA 377 Query: 389 WHATVGIFRSGGDTFF 404 + +G+ R G T F Sbjct: 378 FFTAMGVARGSGRTAF 393 Score = 43.1 bits (100), Expect = 1e-05 Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 1/154 (0%) Query: 249 GREVRDYLERALPVVGSEVGWALGVSAYQAVFARVSTEAVAAYTLANTLFNFAVVVFVGT 308 G V+ L A P+V + + A S RVSTE +AA A+ L + +G Sbjct: 16 GPIVKVILALATPIVAARLLAATQESVDAIFLGRVSTEDLAAPAAASPLLWLFAGLGIGI 75 Query: 309 SNACSIMIGNVLGKGRVRRAQEYAVSFSLWAVLLGALSGLFLIAGXXXXXXXXRISPLAK 368 + S ++ +G AQ YA ++LGA S L +I + Sbjct: 76 NTTLSALVSQAIGARDYASAQRYASKLLGATLMLGAASALAIILTAETVFILQGFQGRSL 135 Query: 369 EFLRASLVVVGVAMPWKIFNWHATVGIFRSGGDT 402 E A +V V MP+ + ++ + + GDT Sbjct: 136 EVALAYTLVEAVGMPFMLALFYFN-AVMAASGDT 168 >gi|118431584|ref|NP_148157.2| MatE efflux family protein [Aeropyrum pernix K1] Length = 442 Score = 113 bits (282), Expect = 1e-26 Identities = 99/377 (26%), Positives = 161/377 (42%), Gaps = 11/377 (2%) Query: 27 RRVWMLAFPIAVQNLLFSVLNMVDTFMIGQLGTEEVAGVALANQWYFVFFLFVFAIGSGA 86 RR + +P+ V + S+ +VDT+ +G LG+E +A V A +++ +F + G Sbjct: 10 RRALSIGWPLVVADSALSIAWIVDTYFVGGLGSESIAAVGAAGYLIWLYMVFSTLVYMGV 69 Query: 87 AIFTAQLWGKGDAEGVRRFAGIALIFALFIGAVFSIVALLFPSLILRVFTDDGEVIALGL 146 + Q G G+ V R AG L ++ + + A +L V EV L Sbjct: 70 LVILGQAIGSGNRGLVERAAGEGLTLSILLSIIVCAAAFAASKQLLVVLAP--EVDQLAW 127 Query: 147 SYFRWIWISYPFTAFSFLYGIVLRSTGEVALPFRASTIALVMNTVGNYLLIFGPGPFPRL 206 Y ++ + LY V R+ G+ +S + + NT + +LI+G P L Sbjct: 128 EYLSVSLLTVALHYVTILYDAVFRALGKTMPILYSSGVFTLANTALDPILIYGRLGAPAL 187 Query: 207 GVEGAAIATVIARIFEAGYVLIAVYLRRTVLAAGLRSLLSFSGREVRDYLERALPVVGSE 266 GVEGAA A+V A + +L+ VYL R L GLR L S R L P + Sbjct: 188 GVEGAAWASVAASLLG---LLVLVYLSR-YLDVGLRPLRPTS--VSRSILALGFPSMVER 241 Query: 267 VGWALGVSAYQAVFARVSTEAVAAYTLANTLFNFAVVVFVGTSNACSIMIGNVLGKGRVR 326 V + +G Y +R +A+AA+T+ + + A + + A +M+G +G GR+ Sbjct: 242 VVFVVGNVVYLGSVSRCGADALAAHTIGVRIESLAFLPLFSIATASGVMVGWEVGAGRIA 301 Query: 327 RAQEYAVSFSLWAVLLGALSGLFLIAGXXXXXXXXRISPLAKEFLRASLVVVGVAMPWKI 386 ++ + L+G + G L G P LV+ G+ P + Sbjct: 302 ESKSTGWELIKLSSLIGLVVGAALALGGWLVTPIFTGDPRVAWLAALYLVIAGLTEP--L 359 Query: 387 FNWHATVG-IFRSGGDT 402 G I R+ GDT Sbjct: 360 LGVVMVAGQIIRNAGDT 376 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.143 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 479,840 Number of Sequences: 1700 Number of extensions: 20935 Number of successful extensions: 85 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79 Number of HSP's gapped (non-prelim): 3 length of query: 480 length of database: 492,079 effective HSP length: 80 effective length of query: 400 effective length of database: 356,079 effective search space: 142431600 effective search space used: 142431600 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719880|ref|YP_003875412.1| hypothetical protein STHERM_c22120 [Spirochaeta thermophila DSM 6192] (107 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.313 0.129 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,704 Number of Sequences: 1700 Number of extensions: 3243 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 107 length of database: 492,079 effective HSP length: 65 effective length of query: 42 effective length of database: 381,579 effective search space: 16026318 effective search space used: 16026318 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719881|ref|YP_003875413.1| polyphosphate kinase [Spirochaeta thermophila DSM 6192] (681 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 690,965 Number of Sequences: 1700 Number of extensions: 31831 Number of successful extensions: 107 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107 Number of HSP's gapped (non-prelim): 0 length of query: 681 length of database: 492,079 effective HSP length: 83 effective length of query: 598 effective length of database: 350,979 effective search space: 209885442 effective search space used: 209885442 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719882|ref|YP_003875414.1| hypothetical protein STHERM_c22140 [Spirochaeta thermophila DSM 6192] (507 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.140 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 483,779 Number of Sequences: 1700 Number of extensions: 20796 Number of successful extensions: 67 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 0 length of query: 507 length of database: 492,079 effective HSP length: 81 effective length of query: 426 effective length of database: 354,379 effective search space: 150965454 effective search space used: 150965454 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719883|ref|YP_003875415.1| hypothetical protein STHERM_c22150 [Spirochaeta thermophila DSM 6192] (153 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.143 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 123,943 Number of Sequences: 1700 Number of extensions: 4549 Number of successful extensions: 20 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 0 length of query: 153 length of database: 492,079 effective HSP length: 70 effective length of query: 83 effective length of database: 373,079 effective search space: 30965557 effective search space used: 30965557 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719884|ref|YP_003875416.1| hypothetical protein STHERM_c22160 [Spirochaeta thermophila DSM 6192] (312 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431753|ref|NP_148418.2| erythrocyte band 7 integral membra... 148 1e-37 >gi|118431753|ref|NP_148418.2| erythrocyte band 7 integral membrane protein [Aeropyrum pernix K1] Length = 271 Score = 148 bits (374), Expect = 1e-37 Identities = 88/236 (37%), Positives = 139/236 (58%), Gaps = 6/236 (2%) Query: 14 LWLAFIVFFRLIRIVPEQEAWVVEQLGKYRKTMGAGLHFVVPFLQRVAYRHTLKEQVLDV 73 L + I+ I+IV E E V+ +LG+ G GL ++PF+ + + L+ +D+ Sbjct: 21 LLIVLILLSMSIKIVREYERAVIFRLGRLIGVKGPGLFLIIPFVDTLV-KVDLRIVTVDI 79 Query: 74 EPQVCITRDNVQVTVDGVLYLKVVDPVKASYGIDDYRYASIQLAKTTMRSEIGKIDLDNT 133 Q IT+DNV V VD V+Y KV DP KA I++Y YA + LA+TT+R IG+++LD+ Sbjct: 80 PEQRTITKDNVTVGVDAVVYYKVFDPEKAVVRIENYHYAVVMLAQTTLRDVIGQVELDDL 139 Query: 134 FSERERINTAIVKAVDEASDPWGVKVTRYEIRDILPPVTVLEAMERQVQAERKKRAQILT 193 ++RE IN + + +D+ +DPWG+KVT I+++ P ++L AM +Q +AER +RA+I+ Sbjct: 140 LTKREEINKKLQEILDQLTDPWGIKVTAVTIKEVKLPESMLRAMAKQAEAERWRRARIIE 199 Query: 194 SEGEKEARINLARG----ERESAINLSKGEKQAKINTAEGEAHAVETIARATAESL 245 +EGE++A +A E+ A L E Q I A+ + V T R AE + Sbjct: 200 AEGERQAAKIMAEAAEFYEKHPAA-LRLRELQTLIEVAKEKNLVVVTPLRMGAEDM 254 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.134 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 282,469 Number of Sequences: 1700 Number of extensions: 11280 Number of successful extensions: 43 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 1 length of query: 312 length of database: 492,079 effective HSP length: 77 effective length of query: 235 effective length of database: 361,179 effective search space: 84877065 effective search space used: 84877065 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719885|ref|YP_003875417.1| hypothetical protein STHERM_c22170 [Spirochaeta thermophila DSM 6192] (312 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431753|ref|NP_148418.2| erythrocyte band 7 integral membra... 142 8e-36 >gi|118431753|ref|NP_148418.2| erythrocyte band 7 integral membrane protein [Aeropyrum pernix K1] Length = 271 Score = 142 bits (359), Expect = 8e-36 Identities = 69/166 (41%), Positives = 109/166 (65%), Gaps = 1/166 (0%) Query: 41 VVERLGKYSRTLGAGIHLLVPFMEKVKYVHTLKEQVIDVPKQPAITRDNVRIEIDGVLYL 100 V+ RLG+ G G+ L++PF++ + V L+ +D+P+Q IT+DNV + +D V+Y Sbjct: 42 VIFRLGRLIGVKGPGLFLIIPFVDTLVKVD-LRIVTVDIPEQRTITKDNVTVGVDAVVYY 100 Query: 101 KLMDPVKASYGIEDYHYATIQLAQTTMRSVIGQLELDKTFEEREAINAAIVRGISDATEP 160 K+ DP KA IE+YHYA + LAQTT+R VIGQ+ELD +RE IN + + T+P Sbjct: 101 KVFDPEKAVVRIENYHYAVVMLAQTTLRDVIGQVELDDLLTKREEINKKLQEILDQLTDP 160 Query: 161 WGVQIVRYEIQNIHVPQSILEAMEIQMKAEREKRAVVAQSEGEMES 206 WG+++ I+ + +P+S+L AM Q +AER +RA + ++EGE ++ Sbjct: 161 WGIKVTAVTIKEVKLPESMLRAMAKQAEAERWRRARIIEAEGERQA 206 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.314 0.131 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 243,470 Number of Sequences: 1700 Number of extensions: 9630 Number of successful extensions: 30 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 1 length of query: 312 length of database: 492,079 effective HSP length: 77 effective length of query: 235 effective length of database: 361,179 effective search space: 84877065 effective search space used: 84877065 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719886|ref|YP_003875418.1| aspartyl-tRNA synthetase [Spirochaeta thermophila DSM 6192] (424 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431776|ref|NP_148450.2| aspartyl-tRNA synthetase [Aeropyru... 318 1e-88 >gi|118431776|ref|NP_148450.2| aspartyl-tRNA synthetase [Aeropyrum pernix K1] Length = 442 Score = 318 bits (816), Expect = 1e-88 Identities = 184/438 (42%), Positives = 262/438 (59%), Gaps = 22/438 (5%) Query: 4 LAAQIASHTGKDVVVKGWVHRIRELGGISFIILRDRSGEVQLV----------LEGSADL 53 + A S G V V GW +RIR+LG + FI++RDRSG +Q L + DL Sbjct: 10 IIASKESLVGGRVRVCGWAYRIRDLGRLKFILVRDRSGVIQATVKRGESPEDALRAAEDL 69 Query: 54 TLESVISVKGRVEANEKAPG--GAEIHVGEIEVLARAEPDLPIPINQDPSQLSLDALLDH 111 LESV+ V+G + +AP G E+ V +EVL+ LP+ + + + SL L + Sbjct: 70 KLESVVCVEGELR---QAPTREGVEVKVERLEVLSTPVEPLPLEV-EGSEKASLPTRLKY 125 Query: 112 RMLSLRIPKIRSIFTLQAGLVQYFADYLRSQGFSEIKTSKLIATGTEGGTGLFEVNYFDR 171 R L +R P + +IF L+A + + F DY SQGF EI T K++A GTE G +F V YFD+ Sbjct: 126 RWLDIRNPMVSAIFELEAMVAKVFRDYYWSQGFVEIFTPKIVAAGTESGAEVFPVVYFDK 185 Query: 172 KVYLAQSPQFYKQAMVASGMERVFEIGMAYRAEKHDTPRHLNEYVSLDVEMAFIETEHDL 231 +LAQSPQFYKQ V +G+ERVFEIG +RAE H T RHLNEY SLD+E+ FIE+ +D+ Sbjct: 186 TAFLAQSPQFYKQFAVIAGLERVFEIGPVFRAEPHHTSRHLNEYHSLDIEVGFIESYNDV 245 Query: 232 MDLEEGILAYMFEKVKSEHEEVLRLWDATVPDPERVKDIPRISYDEGKKIASERAGRKI- 290 M+ EG + + ++ + VL L+ +P IP+I + +I E+ G+K+ Sbjct: 246 MNYVEGFMRAIVRMLEEDGRRVLELYGVELPRIP-ASGIPKIPLRKAYEILEEKYGKKVE 304 Query: 291 --FEINPEAERLLCEWAHEKAGIEAVFVYGFPRRARPFYTY--PEGRSSTKSFDLLFRGL 346 +++ E ERL+ +A E+ + VF+ +P + RPFYT + S T SFDLL+RGL Sbjct: 305 YGEDLDSEGERLMGAYAGEELDSDFVFIVEYPWKVRPFYTMRKDDEPSWTYSFDLLYRGL 364 Query: 347 EITTGGRRINEYSMLKETLPLFGLTEEGLGGYVEIFKYGCPPHGGFAIGLERLTQKILGL 406 EI TGG+R + Y L E L GL E Y++ FK+G PPHGG +GLER+ + L L Sbjct: 365 EIVTGGQREHRYHRLLENLRDKGLDAESFQFYLDFFKHGAPPHGGAGMGLERIVMQTLKL 424 Query: 407 QNVREASLFPRDRRRVSP 424 +N+REA + PRD R++P Sbjct: 425 ENIREARMLPRDTERITP 442 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 456,790 Number of Sequences: 1700 Number of extensions: 21397 Number of successful extensions: 75 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 1 length of query: 424 length of database: 492,079 effective HSP length: 79 effective length of query: 345 effective length of database: 357,779 effective search space: 123433755 effective search space used: 123433755 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719887|ref|YP_003875419.1| aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [Spirochaeta thermophila DSM 6192] (474 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601580|ref|NP_148120.1| aspartyl/glutamyl-tRNA amidotransfe... 264 3e-72 gi|14601911|ref|NP_148456.1| glutamyl-tRNA(Gln) amidotransferase... 74 1e-14 >gi|14601580|ref|NP_148120.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Aeropyrum pernix K1] Length = 486 Score = 264 bits (675), Expect = 3e-72 Identities = 172/486 (35%), Positives = 258/486 (53%), Gaps = 39/486 (8%) Query: 6 IGLEIHIQLLTK-SKVFCSCRAQF-GDEPNTNVCPVCMGYPGVLPALNEEAVRMGYVVAR 63 IGLEIH+QL SK+FC C +++ G +PNTNVCPVC+G PG LP + + + + Sbjct: 10 IGLEIHVQLSNAGSKLFCGCDSEYRGYKPNTNVCPVCLGLPGALPVPSRRPIVLAIAASM 69 Query: 64 ALNCTLSRRTVFARKNYFYPDMPKNYQISQYDD----PIGRDGYIDI--EIGGRIKRVRV 117 AL C + VF RK+YFYPD+PKNYQI+Q++ P+ G ++ R +R R+ Sbjct: 70 ALGCRVPGTVVFTRKHYFYPDLPKNYQITQFEKAGGAPVCMGGVLEYLNTDSWRWERARI 129 Query: 118 HEVHLEEDAGKMIHVGDA-----SLCDDNRAGTPLLEIVTEPDMESGEEAEALIQEFRRM 172 ++LEED GK + G +L D NR+G PLLEIVTEPD+ S A LI Sbjct: 130 RRINLEEDPGKTYYEGSILTSRYALVDYNRSGVPLLEIVTEPDIPSPRHARMLIDYLLLT 189 Query: 173 VRYLGVCDGNMEEGSLRCDANVSVNEAGKGLGTKVEIKNLNSSRFVRLALDHEIERQKAL 232 + Y+G + + EG R DAN+S+ G +VE+KN+ S++ V AL EI RQ+ + Sbjct: 190 LEYIGATNPRL-EGVFRVDANISIEG-----GERVEVKNIGSTQDVEKALKFEISRQRLI 243 Query: 233 LEEGRQVVQETRLWNENRDVTESMRTKESAHDYRYFPEPDLPPFVPDEAFFAQVEASLVE 292 +E G +V +ETR W+ R +T+ +R KE DY YFP+PDLPP E A+ E + Sbjct: 244 VERGGKVERETRHWDAERGMTKPLRLKEEEADYLYFPDPDLPPVEITEDMLAEAEKLASK 303 Query: 293 LPLARKQRFLSDYGISVQQADFLIEEKARADFFEEAVRRGVAPSTAAAWLAGDVAKLLNR 352 P R + G+ + A + A F EAV+ G P AA + D+ L Sbjct: 304 TP-GTIYREIESMGVRREIAWSITSTLPAARLFLEAVKLGADPRIAARLVGVDLKGELKE 362 Query: 353 YRVELDASPLTM---DRFVLLMELLQKGE-----IHGRIAKQVLSAVFEEDKDPSRIIEE 404 +L SP +L L+ +G+ I G + ++ + D ++ E Sbjct: 363 MGKDL-YSPNNWPPPQSIAILSNLVARGDYTYDSIKGLVVPKLAA---NPGSDVKSLLPE 418 Query: 405 KGWRQLSEEELVKVVDEVITAHPKAVEQVKGGEEKPVGFLMGQVMARTAGRA-HPEKTRE 463 K +++ ++V+EV+ +AV+ G++K + +L+GQVM GRA P + RE Sbjct: 419 K------VKDIERLVEEVLNREKRAVQDYLAGKKKALNYLVGQVMRAAKGRALDPRQARE 472 Query: 464 VLLSRI 469 +LL R+ Sbjct: 473 ILLRRL 478 >gi|14601911|ref|NP_148456.1| glutamyl-tRNA(Gln) amidotransferase subunit E [Aeropyrum pernix K1] Length = 642 Score = 73.6 bits (179), Expect = 1e-14 Identities = 72/269 (26%), Positives = 108/269 (40%), Gaps = 59/269 (21%) Query: 6 IGLEIHIQLLTKSKVFCSCRAQFGDEPNTNVC----PVCMGYPGVLPA------------ 49 +GLEIH QL T+ K+FCSC A+ G+E + P V PA Sbjct: 13 VGLEIHQQLDTREKLFCSCPAELGEEEHDEFVRQLRPTRSELGDVDPAALFEWRKGRLYI 72 Query: 50 --------------------LNEEAVRMGYVVARALNCTLSRRTVFARKNYFYPDMPKNY 89 +N EAV + VA+AL + RK + Sbjct: 73 YQAPLNHSCLVEADEEPPHPINREAVAVAVAVAKALGSAIVDEVHVMRKTVIDGSNTSGF 132 Query: 90 QISQYDDPIGRDGYIDIEIGGRI----KRVRVHEVHLEEDAGKMI-HVGDASLCDDNRAG 144 Q + + +GG I K V + + +EEDA + + G + +R G Sbjct: 133 QRTAI-----------VALGGSIRVGSKEVPIETIVIEEDAARKVGEKGRYVVYRLDRLG 181 Query: 145 TPLLEIVTEPDMESGEEAEALIQEFRRMVRYLGVCDGNMEEGSLRCDANVSVNEAGKGLG 204 PL+EI T P +ES EA + M+R G + G++R D NVS+ G Sbjct: 182 IPLIEIATAPVIESPGEAREVALAIGTMLRLTGKVKRGL--GTIRQDLNVSIRG-----G 234 Query: 205 TKVEIKNLNSSRFVRLALDHEIERQKALL 233 K EIK + + +++E+ RQ +LL Sbjct: 235 AKTEIKGVQRLELIPRVIEYEVLRQLSLL 263 Score = 68.9 bits (167), Expect = 2e-13 Identities = 69/249 (27%), Positives = 116/249 (46%), Gaps = 17/249 (6%) Query: 226 IERQKALLEEGRQVVQETRLWNENRDVTESMRTKESAHDYRYFPEPDLPPFVPDEAFFAQ 285 +ER A LE V +ETR E+ T +R + + R +PE D+PP DE + Sbjct: 398 LERVAAALEG---VPEETRAALED-GTTRYLRPRPGSA--RMYPETDIPPLRIDENILSM 451 Query: 286 VEASLVELPLARKQRFLSDYGISVQQA-DFLIEEKARADFFEEAVRRGVAPSTAAAWLAG 344 E + E P R +YG+S Q A + + +E+ R RG + A Sbjct: 452 AEPLVPEPPEVVAMRLKKEYGLSDQLAWEVIRDERYRLIVSLLEKYRGTLEPSYVAGFFV 511 Query: 345 DVAKLLNRYRVELDASPLTMDRFVL--LMELLQKGEIHGRIAKQVLSAVFEE-DKDPSRI 401 V + L VE+ +D +L +++++ +GEI A +++ + Sbjct: 512 VVLRGLEGEGVEV----WKVDDAILEKILDMVAQGEIAREAAAELVKYLANNPGSTVEEA 567 Query: 402 IEEKGWRQLSEEELVKVVDEVITAHPKAVEQVKGGEEKPVGFLMGQVMARTAGRAHPEKT 461 +E+ G R+LS EE+ ++VDE++ E++ EK VG +MG+ MA+ GRA Sbjct: 568 VEKLGLRRLSREEVERIVDEIVGG---LREEILKRGEKAVGLVMGRAMAKLRGRADGRLV 624 Query: 462 REVLLSRIR 470 E++ +IR Sbjct: 625 SEIVSRKIR 633 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 473,425 Number of Sequences: 1700 Number of extensions: 20929 Number of successful extensions: 76 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 66 Number of HSP's gapped (non-prelim): 4 length of query: 474 length of database: 492,079 effective HSP length: 80 effective length of query: 394 effective length of database: 356,079 effective search space: 140295126 effective search space used: 140295126 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719888|ref|YP_003875420.1| glutamyl-tRNA(Gln) amidotransferase subunit A [Spirochaeta thermophila DSM 6192] (458 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431564|ref|NP_148119.2| glutamyl-tRNA(Gln) amidotransferas... 270 7e-74 gi|118431287|ref|NP_147644.2| amidase [Aeropyrum pernix K1] 48 6e-07 >gi|118431564|ref|NP_148119.2| glutamyl-tRNA(Gln) amidotransferase subunit A [Aeropyrum pernix K1] Length = 481 Score = 270 bits (689), Expect = 7e-74 Identities = 175/437 (40%), Positives = 238/437 (54%), Gaps = 24/437 (5%) Query: 19 LSKLKERNGEIGAFLSL-------DAARGKALSSGDGVLR---GLSFGVKDNIAVEGFPL 68 L L+ ++ AF+SL DAA A G R G+ GVKDNI+ P Sbjct: 29 LDALRRWERDVNAFISLEAEEVLIDAAEEAARRWRRGEARRLEGVVVGVKDNISTSFLPT 88 Query: 69 TCASRILQDLVSPYTATAVRRLLEQGAVVVGKTNLDEFGMGSSCDMSALGRTNNPWDLXX 128 T SR+L + P+ AT V RLL +GA+++GKTNLDEF MGS+ + SA G T NPWDL Sbjct: 89 TAGSRMLDGYIPPFNATVVERLLMEGAIIIGKTNLDEFAMGSTGEFSAFGPTRNPWDLSR 148 Query: 129 XXXXXXXXXXXXXXXXMVPFALGSDTGGSVRQPAAFCGVYGLKPTYGVVSRFGLVAYASS 188 ALGSDTGGSVR PAA+ GLKPTYG+VSR+GL+ YA+S Sbjct: 149 VPGGSSSGSGACLAYGACDAALGSDTGGSVRLPAAYTATVGLKPTYGLVSRYGLIPYANS 208 Query: 189 LEVIGAVAMDLDLLETVFEVMRGEDERDHSSLDPEEDECEVRRIAVLTGELGL------- 241 LE I +A + + + EV+ G DE D +S+ + R + +L L Sbjct: 209 LEQISPMARSSEDVMLLLEVIAGGDEYDATSIYSKPTTAS-REEGLKPEDLSLCIPEELV 267 Query: 242 ---EAPVARAYERAQEALKDLGFQLVEVGLPELE-YAVPAYYTIATAEASANLARYTGIR 297 E V +A+ L+ LG +L VGL E YA+PAYYTIA AEA++NLARY G Sbjct: 268 EHSEEAVRKAFYNTVGKLEGLGARLEYVGLGGAEAYALPAYYTIALAEAASNLARYDGSL 327 Query: 298 YGHRPMWSENPQELMRKARSEGFGPEVKLRILLGTFVLRSGFQDRYYHKAQRVRTLIRRS 357 Y R S + +AR GFG EVK RIL+G +VL G++D YY A ++R +IR + Sbjct: 328 YPVRGS-SGDYWRQAAEARGIGFGLEVKRRILMGVYVLSEGYKDEYYLAATKLRRVIRDA 386 Query: 358 LEQVFSSADVLLMPVFPTLPFPHGEGGLSSFQQKMADRFTTTANLAGVPALAVPVGREEG 417 + + ++ P P +P GE + D +T ANL+G+PA+A+P+ G Sbjct: 387 MLKTVGKC-LVATPASPIMPPRIGERVDDPLKLYAMDVYTVLANLSGLPAIALPIEIHGG 445 Query: 418 LPVGVQVMAPPFGEQRL 434 LPVG+Q++ P GE+ L Sbjct: 446 LPVGLQLIGPRLGERLL 462 >gi|118431287|ref|NP_147644.2| amidase [Aeropyrum pernix K1] Length = 431 Score = 47.8 bits (112), Expect = 6e-07 Identities = 81/336 (24%), Positives = 127/336 (37%), Gaps = 37/336 (11%) Query: 87 VRRLLEQGAVVVGKTNLDEFGMGSSCDMSALGRTNNPWDLXXXXXXXXXXXXXXXXXXMV 146 ++ L G +T++D +G+S LG NP + Sbjct: 87 LKALTTGGFEPYARTSMDILALGTSGFNPVLGDVLNPRNPRYTTGGSSGGAAASALLAPG 146 Query: 147 PFALGSDTGGSVRQPAAFCGVYGLKPTYGVVSRFGLVAYASSLEVIGAVAMDLDLLETVF 206 AL SD GGS R PA + GV GLK + G A S+E G +++ + L Sbjct: 147 LLALASDAGGSARIPAGYTGVLGLK--LRRIDYRGYRGMAPSVEAPGLLSLSMTTLVRGL 204 Query: 207 EVMRGEDERDHSSLDPEEDECEVRRIAVLTGE-LG------LEAPVARAYERAQEALKDL 259 E + + ++L + RI +LT E LG L+ A+E EA + Sbjct: 205 EALGYRGVGERAALAAGAAAEGLARITLLTPEDLGLLCREALDPGACSAFEEQVEAARSS 264 Query: 260 G-FQLVEVGLPELEYAVPAYYTIATAEASANLARYTGIRYGHRPMWSENPQELMRKARSE 318 G F + V L L + + T +A+ A ++ S P+ L R Sbjct: 265 GAFLIAGVKLHSLYKTLEPPRAVVTLAEAADWAG----KFCREECVSRLPERLKGLLRLG 320 Query: 319 GFGPEVKLRILLGTFVLRSGFQDRYYHKAQRVRTLIRRSLEQVFSSADVLLMPVFPTLP- 377 G LR G +A RV +R S + + VL P T Sbjct: 321 GM-----LRPWRG--------------EAARVLERVRTSTQ--IPGSTVLATPAVATGGC 359 Query: 378 FPHGEGGLSSFQQKMADRFTTTANLAGVPALAVPVG 413 P E G ++ ++ A FT+ AN + +L++P+G Sbjct: 360 IPVEEAGRLAYTRR-AIVFTSLANTLDLYSLSIPLG 394 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 486,790 Number of Sequences: 1700 Number of extensions: 22626 Number of successful extensions: 77 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 72 Number of HSP's gapped (non-prelim): 2 length of query: 458 length of database: 492,079 effective HSP length: 80 effective length of query: 378 effective length of database: 356,079 effective search space: 134597862 effective search space used: 134597862 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719889|ref|YP_003875421.1| hypothetical protein STHERM_c22210 [Spirochaeta thermophila DSM 6192] (92 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,135 Number of Sequences: 1700 Number of extensions: 1968 Number of successful extensions: 4 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 92 length of database: 492,079 effective HSP length: 61 effective length of query: 31 effective length of database: 388,379 effective search space: 12039749 effective search space used: 12039749 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719890|ref|YP_003875422.1| hypothetical protein STHERM_c22220 [Spirochaeta thermophila DSM 6192] (471 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.139 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 499,691 Number of Sequences: 1700 Number of extensions: 22535 Number of successful extensions: 41 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 0 length of query: 471 length of database: 492,079 effective HSP length: 80 effective length of query: 391 effective length of database: 356,079 effective search space: 139226889 effective search space used: 139226889 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719891|ref|YP_003875423.1| purine nucleoside phosphorylase deoD-type [Spirochaeta thermophila DSM 6192] (239 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431732|ref|NP_148386.2| uridine phosphorylase [Aeropyrum p... 96 6e-22 gi|118431293|ref|NP_147653.2| S-methyl-5-thioadenosine phosphory... 95 2e-21 >gi|118431732|ref|NP_148386.2| uridine phosphorylase [Aeropyrum pernix K1] Length = 282 Score = 96.3 bits (238), Expect = 6e-22 Identities = 70/209 (33%), Positives = 106/209 (50%), Gaps = 16/209 (7%) Query: 1 MSIHIGAKEGEIADVVLLPGDPLRAQEIAQRFLDDPVCYNRVRNMLGFTGTWRGMRVSVQ 60 + H+ + G++A VLLPGDP R IA R D+ R +TG ++G +SV Sbjct: 18 LQYHLRVRRGDVARYVLLPGDPERTDLIA-RLWDEARLVAHHREYRTWTGFYKGTSISVT 76 Query: 61 GTGMGIPSISIYVEELIREYGAKILMRVGTCGSLQRDVGLYHLVLAQSASSDSNVNRRRF 120 TG+G PS +I VEEL+R GA+ +RVGT G ++ D+ LV+ SA+ ++ Sbjct: 77 STGIGSPSTAIAVEELLR-VGAETFIRVGTMGGIREDLRPGTLVIG-SAAVRMEGTSGQY 134 Query: 121 RGLDFAPWADFDLLSTAFQVARERGLPVHVGGVISSDTFY------------QPDPEE-W 167 F A +D+++ + A G+ VG V S+D+FY P+ E Sbjct: 135 APRGFPAAASYDVVAALVEAAEALGVRYEVGVVASTDSFYLGQGRPGYGGYMTPEASEVI 194 Query: 168 KLWARYGVMAVEMEASGLYTIALREGVKA 196 L GV+ EMEAS L+T++ G +A Sbjct: 195 PLLRSAGVLGFEMEASALFTLSQLYGARA 223 >gi|118431293|ref|NP_147653.2| S-methyl-5-thioadenosine phosphorylase [Aeropyrum pernix K1] Length = 244 Score = 94.7 bits (234), Expect = 2e-21 Identities = 64/199 (32%), Positives = 105/199 (52%), Gaps = 6/199 (3%) Query: 3 IHIGAKEGEIADVVLLPGDPLRAQEIAQRFLDDPVCYNRVRNMLGFTGTWRGMRVSVQGT 62 +H+ A G++A +V+ GDP RA+ +A L+D + R + +TG++ G V++ Sbjct: 5 VHLEAGPGDVAPLVVAVGDPGRAERLATGLLEDARLVSSARGLKVYTGSFNGSEVTIATH 64 Query: 63 GMGIPSISIYVEELIREYGAKILMRVGTCGSLQRDVGLYHLVLAQSA----SSDSNVNRR 118 G+G PS ++ EEL R GA++L+R+GT G L +D+ L +V+A A S ++ Sbjct: 65 GIGGPSAAVVFEEL-RMLGAEVLVRLGTSGGLSKDLRLGDVVVAAGAGCYWGSGGSIQYA 123 Query: 119 RFRGLDFAPWADFDLLSTAFQVARER-GLPVHVGGVISSDTFYQPDPEEWKLWARYGVMA 177 R + D L + ++ R G V + V+SSD FY PE W G+ A Sbjct: 124 GERPMCLPASPDPILTAGIYRGLSSRLGDRVVLAPVMSSDAFYAETPEAAGRWRSLGMAA 183 Query: 178 VEMEASGLYTIALREGVKA 196 VEME L++I+ G ++ Sbjct: 184 VEMELHTLFSISWIRGFRS 202 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 231,423 Number of Sequences: 1700 Number of extensions: 9744 Number of successful extensions: 51 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 2 length of query: 239 length of database: 492,079 effective HSP length: 74 effective length of query: 165 effective length of database: 366,279 effective search space: 60436035 effective search space used: 60436035 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719892|ref|YP_003875424.1| lipoate-protein ligase A [Spirochaeta thermophila DSM 6192] (292 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14602008|ref|NP_148553.1| lipoate-protein ligase [Aeropyrum p... 58 3e-10 gi|118431838|ref|NP_148554.2| lipoate-protein ligase [Aeropyrum ... 50 5e-08 >gi|14602008|ref|NP_148553.1| lipoate-protein ligase [Aeropyrum pernix K1] Length = 264 Score = 57.8 bits (138), Expect = 3e-10 Identities = 53/174 (30%), Positives = 78/174 (44%), Gaps = 15/174 (8%) Query: 1 MVLLSSSRDVFLNLAYEQYLLRAGRE---GVLFLYVNDPAVVVGRFQIPWAECWPERLEE 57 M+L ++ N+A E+ LL E + L+VN +++VG E E+ Sbjct: 1 MILKTTGGSPHFNIALEEALLEESAEHGIAIARLWVNPDSIIVGYTSDVGREVNIEQARA 60 Query: 58 RGVVLARRDSGGGAVFHDGGNLNLA-WVGRAGERGGLARFXXXXXXXXXXXXXXXXXXDL 116 GV + RR SGGGAVFHD GN+N++ ++ R R G+ + Sbjct: 61 EGVPVVRRISGGGAVFHDLGNMNVSVYIPR---RLGVDE-AYALVTSIILKTLHRLGIEG 116 Query: 117 WLEDGR-------KVSGAAFRITGGWKLEHHTLLVETDPVCVEEALRPVPGRFE 163 +E+G KVSG+A I L H TLL+ TDP + + P R E Sbjct: 117 RVENGNDVAVGPWKVSGSAAAIRARATLAHATLLLTTDPSRIRRLVIPQLHRVE 170 >gi|118431838|ref|NP_148554.2| lipoate-protein ligase [Aeropyrum pernix K1] Length = 264 Score = 50.4 bits (119), Expect = 5e-08 Identities = 62/217 (28%), Positives = 90/217 (41%), Gaps = 50/217 (23%) Query: 2 VLLSSSRDVFLNLAYEQYLLRAGREGVLFLYVNDPA-VVVGRFQ----IPWAECWPERLE 56 V++ RD +N+A ++ +LR G L +Y+ P + +GR Q + AE E Sbjct: 5 VVVDGPRDPRMNMAIDEAILRVGAAPTLRIYMWLPGGLTLGRRQSVEDVNLAEA-----E 59 Query: 57 ERGVVLARRDSGGGAVFHD-------------------------------GGNLNLAWVG 85 +RG VL RR +GG A+ H G L L +G Sbjct: 60 KRGYVLVRRPTGGAALLHPWEREITYSLVLDSRHPYYSLDVAESAATIAGGVALALEELG 119 Query: 86 RAGERGGLARFXXXXXXXXXXXXXXXXXXDLWLEDGRKVSGAAFRITGGWKLEHHTLLVE 145 A GG + D+ + GRKVSG+A R GG L+H TLL+ Sbjct: 120 IATRVGG---YTPPPGVIGGLCYVRPGSSDVVVA-GRKVSGSAQRRIGGRLLQHGTLLLR 175 Query: 146 TDPVCVEEALRPVPGRFEGKGVGSRRARVGRIGEVAG 182 DP EE L +P +G G +R+ I ++AG Sbjct: 176 FDP---EEWLSIIP--VKGAGPSDLASRIAGIEDLAG 207 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.142 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 322,044 Number of Sequences: 1700 Number of extensions: 15510 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 4 length of query: 292 length of database: 492,079 effective HSP length: 76 effective length of query: 216 effective length of database: 362,879 effective search space: 78381864 effective search space used: 78381864 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719893|ref|YP_003875425.1| hypothetical protein STHERM_c22250 [Spirochaeta thermophila DSM 6192] (132 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.143 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 158,189 Number of Sequences: 1700 Number of extensions: 7306 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 132 length of database: 492,079 effective HSP length: 68 effective length of query: 64 effective length of database: 376,479 effective search space: 24094656 effective search space used: 24094656 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719894|ref|YP_003875426.1| hypothetical protein STHERM_c22260 [Spirochaeta thermophila DSM 6192] (336 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 328,125 Number of Sequences: 1700 Number of extensions: 14569 Number of successful extensions: 81 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81 Number of HSP's gapped (non-prelim): 0 length of query: 336 length of database: 492,079 effective HSP length: 77 effective length of query: 259 effective length of database: 361,179 effective search space: 93545361 effective search space used: 93545361 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719895|ref|YP_003875427.1| hypothetical protein STHERM_c22270 [Spirochaeta thermophila DSM 6192] (151 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.143 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 151,029 Number of Sequences: 1700 Number of extensions: 6442 Number of successful extensions: 25 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 0 length of query: 151 length of database: 492,079 effective HSP length: 69 effective length of query: 82 effective length of database: 374,779 effective search space: 30731878 effective search space used: 30731878 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719896|ref|YP_003875428.1| sigma factor sigB regulation protein [Spirochaeta thermophila DSM 6192] (639 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.140 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 589,643 Number of Sequences: 1700 Number of extensions: 25035 Number of successful extensions: 80 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80 Number of HSP's gapped (non-prelim): 0 length of query: 639 length of database: 492,079 effective HSP length: 83 effective length of query: 556 effective length of database: 350,979 effective search space: 195144324 effective search space used: 195144324 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719897|ref|YP_003875429.1| anti sigma b factor antagonist RsbV [Spirochaeta thermophila DSM 6192] (110 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.139 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,265 Number of Sequences: 1700 Number of extensions: 3353 Number of successful extensions: 9 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 110 length of database: 492,079 effective HSP length: 65 effective length of query: 45 effective length of database: 381,579 effective search space: 17171055 effective search space used: 17171055 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719898|ref|YP_003875430.1| hypothetical protein STHERM_c22300 [Spirochaeta thermophila DSM 6192] (193 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 186,588 Number of Sequences: 1700 Number of extensions: 7666 Number of successful extensions: 17 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 193 length of database: 492,079 effective HSP length: 72 effective length of query: 121 effective length of database: 369,679 effective search space: 44731159 effective search space used: 44731159 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719899|ref|YP_003875431.1| hypothetical protein STHERM_c22310 [Spirochaeta thermophila DSM 6192] (387 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 291,048 Number of Sequences: 1700 Number of extensions: 9905 Number of successful extensions: 28 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 0 length of query: 387 length of database: 492,079 effective HSP length: 79 effective length of query: 308 effective length of database: 357,779 effective search space: 110195932 effective search space used: 110195932 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719900|ref|YP_003875432.1| hypothetical protein STHERM_c22320 [Spirochaeta thermophila DSM 6192] (343 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601230|ref|NP_147763.1| dTDP-glucose 4,6-dehydratase [Aerop... 67 5e-13 gi|118431352|ref|NP_147762.2| dTDP-4-dehydrorhamnose reductase [... 45 3e-06 >gi|14601230|ref|NP_147763.1| dTDP-glucose 4,6-dehydratase [Aeropyrum pernix K1] Length = 330 Score = 67.4 bits (163), Expect = 5e-13 Identities = 93/335 (27%), Positives = 140/335 (41%), Gaps = 60/335 (17%) Query: 1 MRILFIGGTGNISSACVREAPAEGVETWILV--------RGSSDRPVPEGARVLLGDITD 52 MR+L GG G I S+ VR + +LV R + V + + GDI D Sbjct: 1 MRVLVTGGAGFIGSSFVRYI-VNTTDWEVLVYDKLTYAGRLENLHDVIDRIGFMRGDIAD 59 Query: 53 KDSIRDLLRPYSFDVVVDWVAYTPRD----------------VERDLELFEGRTQRYVF- 95 ++ +L + DVVV++ A T D V LE R + V Sbjct: 60 EEQFGRVLTEFEPDVVVNFAAETHVDRSINEPAPFMRTNIIGVFTILEAIRKRIDQIVLL 119 Query: 96 -ISSASVYRRP-APGVFHRESDPRGNPFWDYAREKIRGEDLLLEAAPSRGIQPLIVRPSH 153 +S+ VY G ESDP NP Y+ K G+ L+ + G++ IVRP + Sbjct: 120 HVSTDEVYGDLWNTGKEATESDPL-NPSSPYSASKASGDLLIKAYGRTYGLKYRIVRPCN 178 Query: 154 TIG-----EGWIPTSFGSRDFTVPARILRGKPIVIHDDGLALWTLTHAEDFARAFVPLIL 208 G E IP + RIL GKP VI+ DG + + ED ARA + ++L Sbjct: 179 NYGPYQHVEKLIPRTI--------IRILHGKPPVIYGDGSQIRDWLYVEDTARA-IHVVL 229 Query: 209 KPSLRHAAYHITSPFAYTWEEIHERLAEALGK-RSRVVYVPSRHIARLLPRQGASLMGDK 267 + + Y++ A T ++I + E++GK R +VY SR P + D+ Sbjct: 230 EKGVDGEIYNVCGGMASTVKDIVVNILESMGKPRDYLVYGKSR------PGE------DR 277 Query: 268 RYTTLFDTSRLREEVPDVQFRIPLEEMISRSLAWY 302 RY D R P + L+E + ++ WY Sbjct: 278 RYAMKCDKIRNLGWAP----HVTLKEGLKITVKWY 308 >gi|118431352|ref|NP_147762.2| dTDP-4-dehydrorhamnose reductase [Aeropyrum pernix K1] Length = 300 Score = 44.7 bits (104), Expect = 3e-06 Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 28/199 (14%) Query: 1 MRILFIGGTGNISSACVREAPAEGVETWILVRGSSDRPVPEGARVLLGDITDKDSIRDLL 60 M++L GGTG + V++ +G + ++ + GAR ++ D + L Sbjct: 1 MKLLVTGGTGLLGYNLVQQLLKKGYSVYPTYNKNTPFKLA-GARWSKVNLEDPSQLTQLF 59 Query: 61 RPYSFDVVVDWVAYTPRDVERDLELFEGRTQRYVFISSASVYRRPA-------------- 106 R D V+ AYT D EL R R F++S +V R A Sbjct: 60 RDIKPDAVIHTAAYTDVD---GCELHRERAYRINFLASMTVARLAARHGSLLIYVSTDYV 116 Query: 107 ----PGVFHRESDPRGNPFWDYAREKIRGEDLLLEAAPSRGIQPLIVRPSHTIGEGWIPT 162 G++ E P NP Y K+ GE L A + L+VR S G+ PT Sbjct: 117 FDGDKGMYREEEAP--NPINYYGLSKLLGEVATLSAMDKENV--LVVRVSGLY--GYSPT 170 Query: 163 SFGSRDFTVPARILRGKPI 181 + V ++LRG+ + Sbjct: 171 GKRNFGINVLEKLLRGEEV 189 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 405,183 Number of Sequences: 1700 Number of extensions: 20607 Number of successful extensions: 81 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 77 Number of HSP's gapped (non-prelim): 2 length of query: 343 length of database: 492,079 effective HSP length: 78 effective length of query: 265 effective length of database: 359,479 effective search space: 95261935 effective search space used: 95261935 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719901|ref|YP_003875433.1| recombination protein RecR [Spirochaeta thermophila DSM 6192] (202 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 202,423 Number of Sequences: 1700 Number of extensions: 8291 Number of successful extensions: 29 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 202 length of database: 492,079 effective HSP length: 73 effective length of query: 129 effective length of database: 367,979 effective search space: 47469291 effective search space used: 47469291 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719902|ref|YP_003875434.1| hypothetical protein STHERM_c22340 [Spirochaeta thermophila DSM 6192] (101 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.138 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,235 Number of Sequences: 1700 Number of extensions: 2389 Number of successful extensions: 11 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 101 length of database: 492,079 effective HSP length: 64 effective length of query: 37 effective length of database: 383,279 effective search space: 14181323 effective search space used: 14181323 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719903|ref|YP_003875435.1| hypothetical protein STHERM_c22350 [Spirochaeta thermophila DSM 6192] (510 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431491|ref|NP_147997.2| replication factor C small subunit... 77 8e-16 gi|118431492|ref|NP_147998.2| replication factor C large subunit... 49 4e-07 >gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1] Length = 325 Score = 77.4 bits (189), Expect = 8e-16 Identities = 71/277 (25%), Positives = 127/277 (45%), Gaps = 34/277 (12%) Query: 11 RPQTFKDLKGQEFVVSTLTNALKAGRVAHAYLFSGPRGVGKTSAARILAKALNCEQGVTP 70 RP++ D+ Q+ VV L +K + H LF+GP G GKT+AA LA L Sbjct: 14 RPRSLDDIVDQKHVVERLKQFVKQRNMPHL-LFAGPPGTGKTTAAHALAHDL-------- 64 Query: 71 EPCGTCTSCKEISQGTAIDVIEIDGASNTSVNDVRVIREEVL-FA----PGKARYKVYII 125 + ++E++ + +N VIRE+V FA P + +K+ ++ Sbjct: 65 -----------FGENYRQYMLELNASDERGIN---VIREKVKEFARSRTPPEIPFKIVLL 110 Query: 126 DEVHMLSNSAFNALLKTIEEPPPYVVFIFATTELQRVPATIRSRCQQYHFRLISPEVIAS 185 DE +++ A AL + +E FI ++ I+SRC + F+ +S + + Sbjct: 111 DEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIE 170 Query: 186 LLREAASEMQVEVEEEALSWIAKEADGSLRDAYTLFDQVVSFSEGRLSYALIQEKLGLVG 245 LR A V+ EEEAL I + ++G +R A + Q S+ G+++ + +G+ Sbjct: 171 RLRYIAENEGVDYEEEALDAIYEISEGDMRKAINVL-QAASYL-GKVTVDAVYRVVGMAK 228 Query: 246 FERLQAVVEACAREEVKGALDLVHEIL----MSGVSV 278 ++ ++ + + A L+ +I+ MSG V Sbjct: 229 PREVREMLATALKGDFTAARSLLRKIMIEYGMSGEDV 265 >gi|118431492|ref|NP_147998.2| replication factor C large subunit [Aeropyrum pernix K1] Length = 479 Score = 48.5 bits (114), Expect = 4e-07 Identities = 60/246 (24%), Positives = 101/246 (41%), Gaps = 50/246 (20%) Query: 11 RPQTFKDLKGQEFVVSTLTNALKA---GRVA--HAYLFSGPRGVGKTSAARILAKALNCE 65 RP+ +D+ Q+ L KA GR A L GP GVGKTS +A N Sbjct: 17 RPKRVEDVVNQDQAKKILVPWFKAWLEGRKPDKRAALLYGPPGVGKTSLVEAIASEFN-- 74 Query: 66 QGVTPEPCGTCTSCKEISQGTAIDVIEIDGASNTSVNDVRVI-----REEVLFAPGKARY 120 +++IE++ + +D+ I R+ +F G Sbjct: 75 ----------------------LEMIELNASDYRRRSDIERIVGAASRKRSMFKRG---- 108 Query: 121 KVYIIDEVHMLSN-------SAFNALLKTIEEPPPYVVFIFATTELQRVPATIRSRCQQY 173 V ++DEV ++ A +++KT E P + + A + +R Sbjct: 109 VVILLDEVDGINPREDAGGIEALLSVIKTTENP----IVMTANDPWKDFLRPLREVSLMV 164 Query: 174 HFRLISPEVIASLLREAASEMQVEVEEEALSWIAKEADGSLRDAYTLFDQVVSFSEGRLS 233 FR ++ I ++L+ ++E E EAL +IA+ ++G LR A Q V+ GR++ Sbjct: 165 EFRPLTLTHIVAVLQRICEAERIECEREALRYIAERSEGDLRSAINDL-QAVAEGYGRVT 223 Query: 234 YALIQE 239 L +E Sbjct: 224 LTLARE 229 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 521,487 Number of Sequences: 1700 Number of extensions: 23578 Number of successful extensions: 127 Number of sequences better than 1.0e-04: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 124 Number of HSP's gapped (non-prelim): 4 length of query: 510 length of database: 492,079 effective HSP length: 81 effective length of query: 429 effective length of database: 354,379 effective search space: 152028591 effective search space used: 152028591 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 94 (40.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719904|ref|YP_003875436.1| hypothetical protein STHERM_c22360 [Spirochaeta thermophila DSM 6192] (278 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.138 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 277,232 Number of Sequences: 1700 Number of extensions: 12046 Number of successful extensions: 42 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42 Number of HSP's gapped (non-prelim): 0 length of query: 278 length of database: 492,079 effective HSP length: 76 effective length of query: 202 effective length of database: 362,879 effective search space: 73301558 effective search space used: 73301558 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719905|ref|YP_003875437.1| hypothetical protein STHERM_c22370 [Spirochaeta thermophila DSM 6192] (380 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431867|ref|NP_148602.2| Na(+)/H(+) antiporter [Aeropyrum p... 75 4e-15 >gi|118431867|ref|NP_148602.2| Na(+)/H(+) antiporter [Aeropyrum pernix K1] Length = 363 Score = 74.7 bits (182), Expect = 4e-15 Identities = 68/240 (28%), Positives = 107/240 (44%), Gaps = 17/240 (7%) Query: 59 LARLGVIFLLFAAGLETDLDQMRQQGRISVLVALGGVLLPFLAGMGLEFAYGASSAKAAV 118 LA +G LLF AG E DL +R +V+VAL L P L G S + V Sbjct: 58 LAAIGANLLLFMAGSEIDLALLRSILPQAVIVALVSALAPLALTALLHVYLGLSLTSSLV 117 Query: 119 MGTMLTATSVSVTVMALIDLKRLRSPEGTTILSAAVIDDVIGFLLLTFSFAIYGGGEHIL 178 + L+ATSV++T + L + +RS G L++A++ D+ G ++L + A Sbjct: 118 ILASLSATSVALTYLLLSSYRLVRSRLGQLALASAMLLDLSGMIMLNIATASISPS---- 173 Query: 179 WVIAKVVLYFGVTFLVGSFLFRPFMELSRRIHIEKAVVSMGIALCFIFAWAAEQVGVAEI 238 L F + L+ + L P + E A + + I + ++ VGV + Sbjct: 174 -------LAFYIVILLAALLLYPLLPRLGGAPFE-AEIRLITMTVIILGFLSDFVGVHSV 225 Query: 239 TGAYLAGLYLSQTEFRRTIL-EGIEDLGQSFFVSIFFITIGLETYIEGISGDPVYIVLLA 297 +++ G+ S+T R L E +E L FF FFI G+ G P++ V LA Sbjct: 226 LTSFILGVIASETVRTRVQLREKLESLATGFFTPFFFIASGMSI----DPGIPLHYVALA 281 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.329 0.143 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 301,498 Number of Sequences: 1700 Number of extensions: 12115 Number of successful extensions: 62 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 2 length of query: 380 length of database: 492,079 effective HSP length: 78 effective length of query: 302 effective length of database: 359,479 effective search space: 108562658 effective search space used: 108562658 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719906|ref|YP_003875438.1| hypothetical protein STHERM_c22430 [Spirochaeta thermophila DSM 6192] (146 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.327 0.143 0.461 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 167,457 Number of Sequences: 1700 Number of extensions: 7506 Number of successful extensions: 15 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 0 length of query: 146 length of database: 492,079 effective HSP length: 69 effective length of query: 77 effective length of database: 374,779 effective search space: 28857983 effective search space used: 28857983 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719907|ref|YP_003875439.1| permease of an ABC transporter system [Spirochaeta thermophila DSM 6192] (409 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.326 0.142 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 464,970 Number of Sequences: 1700 Number of extensions: 23345 Number of successful extensions: 124 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124 Number of HSP's gapped (non-prelim): 0 length of query: 409 length of database: 492,079 effective HSP length: 79 effective length of query: 330 effective length of database: 357,779 effective search space: 118067070 effective search space used: 118067070 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719908|ref|YP_003875440.1| hypothetical protein STHERM_c22450 [Spirochaeta thermophila DSM 6192] (399 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.324 0.142 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 390,346 Number of Sequences: 1700 Number of extensions: 19312 Number of successful extensions: 87 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87 Number of HSP's gapped (non-prelim): 0 length of query: 399 length of database: 492,079 effective HSP length: 79 effective length of query: 320 effective length of database: 357,779 effective search space: 114489280 effective search space used: 114489280 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 93 (40.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719909|ref|YP_003875441.1| transporter [Spirochaeta thermophila DSM 6192] (225 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aero... 175 1e-45 gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protei... 152 5e-39 gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transpor... 148 1e-37 gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protei... 144 2e-36 gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protei... 129 8e-32 gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein... 128 1e-31 gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protei... 125 9e-31 gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-bind... 119 5e-29 gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-bind... 115 1e-27 gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding... 108 9e-26 gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protei... 108 9e-26 gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC trans... 105 7e-25 gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [A... 105 1e-24 gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protei... 100 4e-23 gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-bindi... 99 1e-22 gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protei... 98 2e-22 gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding... 97 3e-22 gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein... 97 3e-22 gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protei... 96 6e-22 gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC tran... 96 1e-21 gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protei... 95 2e-21 gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC trans... 94 2e-21 gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC trans... 92 1e-20 gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein... 89 7e-20 gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein... 88 2e-19 gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protei... 87 5e-19 gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protei... 86 8e-19 gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein... 84 4e-18 gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum... 82 1e-17 gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein... 80 3e-17 gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein... 79 7e-17 gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protei... 74 2e-15 gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protei... 74 3e-15 gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [A... 66 8e-13 gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [A... 64 2e-12 gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protei... 64 3e-12 gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [A... 64 4e-12 gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [A... 62 2e-11 gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [A... 61 2e-11 gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] 54 3e-09 gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster for... 54 4e-09 >gi|14601291|ref|NP_147826.1| hypothetical protein APE_1253 [Aeropyrum pernix K1] Length = 306 Score = 175 bits (443), Expect = 1e-45 Identities = 95/222 (42%), Positives = 135/222 (60%), Gaps = 9/222 (4%) Query: 3 LVELYEVHKDYHLGRTVVHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSG 62 +V++YE G +V ALR VSL +A+GE +A+MGPSG GKTTLLNI+ +DRP +G Sbjct: 16 VVKIYESR-----GERIV-ALREVSLSVARGEVLAIMGPSGSGKTTLLNIIAGVDRPNAG 69 Query: 63 RVLFDGTDVAGLSDDEEARMRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXXX 122 RV+ DG +V+ +E R R E +G++FQ NLIP LT EN+ +P+ L Sbjct: 70 RVIVDGFEVSSAGGEELRRFRLERVGYVFQQHNLIPTLTALENILLPMAL---AGKANRL 126 Query: 123 XXXXLLALVGLSEYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGI 182 LL VGL P+ELSGG++QR+A+A AL ++P +++ADEPT LD TG+ I Sbjct: 127 RGQELLRRVGLGGKERRYPEELSGGEQQRLAVAVALANDPPIIVADEPTGELDIATGERI 186 Query: 183 LEEMRRLNREEGVTFIFSTHDHETMRFAERVVHLKDGRIHDV 224 + + G T + +THD R A+RV ++DGR+ V Sbjct: 187 VRILLEEAHSRGKTVVLTTHDPRVARMADRVAVIEDGRLRGV 228 >gi|118431539|ref|NP_148070.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 352 Score = 152 bits (385), Expect = 5e-39 Identities = 91/225 (40%), Positives = 128/225 (56%), Gaps = 11/225 (4%) Query: 1 MALVELYEVHKDYHLGRTVVHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPT 60 MA V L + K + G+TV AL+G+ LEI GE V L+GPSGCGKTT L IV ++RP Sbjct: 1 MAGVRLEGIVKRF--GKTV--ALKGIDLEIKDGEAVVLLGPSGCGKTTTLRIVAGLERPD 56 Query: 61 SGRVLFDGTDVAGLSDDEEARMRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXX 120 +GRV FDG DV GL + ++ +FQS+ L P + V +N+ PL +K Sbjct: 57 AGRVYFDGRDVTGLPPKD------RNVAMVFQSYALWPHMRVFDNIAFPLKIKKLPRDEI 110 Query: 121 XXXXXXLLALVGLSEYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGK 180 L+ + P +LSGGQ+QRVA+ARA+V P +++ DEP +NLD+ Sbjct: 111 VRRVRWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAILRI 170 Query: 181 GILEEMRRLNREEGVTFIFSTHDH-ETMRFAERVVHLKDGRIHDV 224 + E+++L R GVT I+ THD E M +R+V + G I V Sbjct: 171 KMRSEIKKLQRRLGVTMIYVTHDQVEAMVIGDRIVVMNFGEIQQV 215 >gi|118431266|ref|NP_147616.2| spermidine/putrescine ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 342 Score = 148 bits (374), Expect = 1e-37 Identities = 89/228 (39%), Positives = 125/228 (54%), Gaps = 16/228 (7%) Query: 4 VELYEVHKDYHLGRTVVHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGR 63 V L VH Y V ALRGVS + A++GPSGCGKTT+L ++ + +P GR Sbjct: 6 VRLDNVHASYG----EVEALRGVSFSFPESSITAVLGPSGCGKTTMLKVIAGLLKPRRGR 61 Query: 64 VLFDGTDVAGLSDDEEARMRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXXXX 123 V F G D GL + R +GF+FQ L P +TV +NV L + Sbjct: 62 VFFGGVDYTGLPPE------RRSVGFVFQDLALFPHMTVYDNVAFGLRARGFSGGEVRRQ 115 Query: 124 XXXLLALVGLS---EYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGK 180 L VGL+ E+ R LSGGQ+QRVA+ARA+ + P +++ DEP ++LD + + Sbjct: 116 VEWALETVGLTPPREFMGRRVTGLSGGQQQRVALARAIAYEPPVLLLDEPLSHLDFKIRQ 175 Query: 181 GILEEMRRLNREEGVTFIFSTHDH-ETMRFAERVVHLKDGRI--HDVP 225 +L E++RL R+ G T I+ THD E M A+ +V ++DGRI H P Sbjct: 176 RLLAELKRLQRKLGSTMIYVTHDQWEAMELADTLVIMRDGRIVQHGTP 223 >gi|118431710|ref|NP_148353.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 391 Score = 144 bits (362), Expect = 2e-36 Identities = 87/225 (38%), Positives = 130/225 (57%), Gaps = 11/225 (4%) Query: 1 MALVELYEVHKDYHLGRTVVHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPT 60 MA V+L V K + G V A+R V+L I EFV+++GPSG GKTTLL ++ I +P+ Sbjct: 1 MASVKLEGVWKVF--GNVV--AVRDVNLYIEDKEFVSILGPSGSGKTTLLYLIAGIYKPS 56 Query: 61 SGRVLFDGTDVAGLSDDEEARMRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXX 120 GR+ F+ DV L + + +IG +FQ++ L P +TV EN+ PL L+ Sbjct: 57 RGRIYFNDVDVTDLPPN------KRNIGLVFQNYALYPHMTVYENIAFPLRLRNFGEPAI 110 Query: 121 XXXXXXLLALVGLSEYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGK 180 + L+G+ P +LSGGQ+QRVA+ARALV P +++ DEP +NLD+ Sbjct: 111 KEKVLSVAKLLGIEGLLDRYPAQLSGGQQQRVALARALVKEPEVLLLDEPLSNLDALLRI 170 Query: 181 GILEEMRRLNREEGVTFIFSTHDH-ETMRFAERVVHLKDGRIHDV 224 I E+++L +E G+T I+ THD E + A+R+ + G I V Sbjct: 171 KIRSELKKLQKELGITAIYVTHDQSEALAMADRIAIIASGVIQQV 215 >gi|118430852|ref|NP_146917.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 368 Score = 129 bits (323), Expect = 8e-32 Identities = 78/229 (34%), Positives = 126/229 (55%), Gaps = 15/229 (6%) Query: 1 MALVELYEVHKDYHLGRTVVHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPT 60 MA + L V K + G+ V A+ V L I GEF L+GPSGCGKTT L ++ ++ P Sbjct: 1 MAEIRLEGVVKRF--GKVV--AVDHVDLSIKDGEFFVLLGPSGCGKTTTLRLIAGLEYPD 56 Query: 61 SGRVLFDGTDVAGLSDDEEARMRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXX 120 GR+L DG DV D ++ ++ +FQ++ L P ++V +N+ L L+ Sbjct: 57 EGRILIDGEDVT-FKDPKD-----RNVAMVFQNYALYPHMSVFDNIAFTLHLRRKEMGLT 110 Query: 121 XXXXXX----LLALVGLSEYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDS 176 + L+ + + +P +LSGGQ+QRVA+ARALV P++ + DEP +NLD+ Sbjct: 111 KDDIRRRVIEVAKLLRIEDLLDRKPGQLSGGQQQRVALARALVRRPKVWLMDEPLSNLDA 170 Query: 177 ETGKGILEEMRRLNREEGVTFIFSTHDH-ETMRFAERVVHLKDGRIHDV 224 + E+++L ++ +T ++ THD E M A+R+ + GR+ V Sbjct: 171 LLRLAMRAELKKLQKDLKITTVYVTHDQAEAMSMADRIAVMNKGRVVQV 219 >gi|14601591|ref|NP_148131.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 358 Score = 128 bits (322), Expect = 1e-31 Identities = 81/225 (36%), Positives = 116/225 (51%), Gaps = 11/225 (4%) Query: 1 MALVELYEVHKDYHLGRTVVHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPT 60 MA + L V K + G TV AL VSL I+ GE L+GPSGCGKTT L ++ + P Sbjct: 1 MAGIRLESVTKRF--GNTV--ALDRVSLNISDGEIFTLLGPSGCGKTTTLRVIAGFETPD 56 Query: 61 SGRVLFDGTDVAGLSDDEEARMRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXX 120 GRV DV L E + +FQ++ L P + V +N+ L L+ Sbjct: 57 EGRVYIGSRDVTMLKPYER------NTAMVFQNYALWPHMRVFDNIAYGLKLRKLPRSEI 110 Query: 121 XXXXXXLLALVGLSEYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGK 180 L+ + P +LSGGQ+QRVA+ARA+V P +++ DEP +NLD+ Sbjct: 111 VRRVRWAAELLEIDHLLDRYPHQLSGGQQQRVAVARAIVTEPEVLLMDEPLSNLDAHLRL 170 Query: 181 GILEEMRRLNREEGVTFIFSTHD-HETMRFAERVVHLKDGRIHDV 224 + EE+ RL + GVT ++ THD E + + RV + GR+ V Sbjct: 171 KMREEIVRLQKRLGVTIVYVTHDQEEALSISHRVAVMNRGRVEQV 215 >gi|118431637|ref|NP_148242.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 248 Score = 125 bits (314), Expect = 9e-31 Identities = 73/203 (35%), Positives = 116/203 (57%), Gaps = 4/203 (1%) Query: 23 LRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSDDEEARM 82 L+GV + ++ GE + +MGPSG GK+TLL + + P SG ++F G DV LS + RM Sbjct: 20 LKGVDVSLSYGEKLVIMGPSGSGKSTLLKAIPRLVEPDSGSIVFRGVDVTRLSGSQ-LRM 78 Query: 83 RREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXX-LLALVGLSEYASHRP 141 R IG++ QS++L P +TV N+ PL L+++G+ + A P Sbjct: 79 VRRKIGYLPQSYSLFPHMTVLRNITYPLEKALGLSRRDAEERAVKYLSMLGIEDLAHRHP 138 Query: 142 DELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLNREEGVTFIFST 201 LSGGQ+QR A+ARAL P +++ DEPT+ LD E+ +LE + R+ G I T Sbjct: 139 ARLSGGQQQRAALARALAMEPDILLLDEPTSALDPESRADVLEALFRV-ATLGKAMIVVT 197 Query: 202 HDHE-TMRFAERVVHLKDGRIHD 223 H+ + ++ A+R+ ++DG + + Sbjct: 198 HEADFAVKVADRMAFMEDGIVKE 220 >gi|118431800|ref|NP_148497.2| dipeptide ABC transporter ATP-binding protein DppD [Aeropyrum pernix K1] Length = 316 Score = 119 bits (299), Expect = 5e-29 Identities = 80/234 (34%), Positives = 128/234 (54%), Gaps = 10/234 (4%) Query: 1 MALVELYEVHKDYHLGRTVVHALRGVSLEIAQGEFVALMGPSGCGKTTL-LNIVGCIDRP 59 MA++++ ++ Y+ +V A+ GVSL + +GE+++++G SG GK+TL L+I I P Sbjct: 1 MAVLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPP 60 Query: 60 ---TSGRVLFDGTDVAGLSDDEEARMRREHIGFIFQ--SFNLIPVLTVAENVEIPLVLKX 114 GR+L+ G D+ L+ +E R R IG +FQ + L P TV + L+ Sbjct: 61 GRIVGGRILYSGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHG 120 Query: 115 XXXXXXXXXXXX--LLALVGLS-EYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPT 171 L LVG+ + AS P +LSGGQRQRVAIA A+ P+++IADEPT Sbjct: 121 LASSGSEAESMAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPT 180 Query: 172 ANLDSETGKGILEEMRRLNREEGVTFIFSTHD-HETMRFAERVVHLKDGRIHDV 224 LD I++ M++L E G+T + THD +++R+ + G + ++ Sbjct: 181 TALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEI 234 >gi|118431801|ref|NP_148498.2| dipeptide ABC transporter ATP-binding protein DppF [Aeropyrum pernix K1] Length = 341 Score = 115 bits (287), Expect = 1e-27 Identities = 79/219 (36%), Positives = 119/219 (54%), Gaps = 10/219 (4%) Query: 15 LGR--TVVHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVA 72 LGR VV A+ GV L I +GE +A++G SGCGKTTL + I+ P+ G + + G + Sbjct: 28 LGRPDAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPSDGAIYYRGELLT 87 Query: 73 GLSDDEEARMRREHIGFIFQS--FNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXX-LLA 129 + R+RR+ + +FQ +L P++ V + V PLV+ +L Sbjct: 88 PHRLARDRRLRRK-LQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLE 146 Query: 130 LVGLS---EYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEM 186 VGL+ E+ +P +LSGGQRQRVAIAR LV P +++ADEP + +D IL+ + Sbjct: 147 TVGLTPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLI 206 Query: 187 RRLNREEGVTFIFSTHDHETMR-FAERVVHLKDGRIHDV 224 +R G T + THD R A+R+ + G+I +V Sbjct: 207 MDYHRRTGATIVLITHDIAVARAVADRIAVMYLGKIVEV 245 >gi|14601497|ref|NP_148036.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 324 Score = 108 bits (271), Expect = 9e-26 Identities = 80/215 (37%), Positives = 114/215 (53%), Gaps = 10/215 (4%) Query: 17 RTVVHALRGVSLEIAQGEFVALMGPSGCGKTTLL-NIVGCIDRP---TSGRVLFDGTDVA 72 R +V A+ GVS + +GE + + G SG GK+TL +I+G + P GR++ DG DV Sbjct: 19 RGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPPGRIVGGRIMIDGMDVT 78 Query: 73 GLSDDEEAR-MRREHIGFIFQSFN--LIPVLTVAENVEIPLVL-KXXXXXXXXXXXXXLL 128 +S+ E R +R + + +FQ L PV TV +E L + + LL Sbjct: 79 SMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQIHRGVGRHEARQRVYELL 138 Query: 129 ALVGLSEYASHR-PDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMR 187 VGL + R P ELSGGQ+QRV IA AL P +VIADEPT LD IL ++ Sbjct: 139 ESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADEPTTALDVVVQAQILNLLK 198 Query: 188 RLNREEGVTFIFSTHDHETM-RFAERVVHLKDGRI 221 +L E+ ++ I THD + AE V+ + G+I Sbjct: 199 KLAWEKNLSIILITHDLSVIAELAETVMIMYGGKI 233 >gi|118431439|ref|NP_147920.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 344 Score = 108 bits (271), Expect = 9e-26 Identities = 71/202 (35%), Positives = 103/202 (50%), Gaps = 4/202 (1%) Query: 11 KDYHLGRTVVHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTD 70 K R V A+ V++ I +G+ + L+G SG GKTT ++ ++ PT GR+ FDG D Sbjct: 40 KSLFFTRAYVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTGGRIFFDGID 99 Query: 71 VAGLSDDEEARMRREHIGFIFQS--FNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXXLL 128 V L RR IFQ +L P T+ + P+ + LL Sbjct: 100 VMKLRGRGLKEFRRR-AQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVGDLQEYIVSLL 158 Query: 129 ALVGLSEYASHR-PDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMR 187 VGL+E +R P E SGGQRQR+AIAR L P ++ DEPT+ LD IL ++ Sbjct: 159 YQVGLNETHLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALDVSVQAQILNLLK 218 Query: 188 RLNREEGVTFIFSTHDHETMRF 209 L R+ +T++F +HD +R+ Sbjct: 219 DLQRKYSLTYLFISHDLGVVRY 240 >gi|14601071|ref|NP_147597.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 254 Score = 105 bits (263), Expect = 7e-25 Identities = 71/212 (33%), Positives = 112/212 (52%), Gaps = 12/212 (5%) Query: 22 ALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSDDEEAR 81 AL V+LEI +G+ L+GP+G GKTTL+N++ +P GRVLF G D+ G+S E ++ Sbjct: 21 ALDKVNLEIERGKVTLLIGPNGSGKTTLVNVISGFYKPDGGRVLFKGRDITGMSPHEISK 80 Query: 82 M---RREHIGFIFQSFNLIP-VLTVA----ENVEIPLV---LKXXXXXXXXXXXXXLLAL 130 + R I F + ++ VLT A ENV + + L +L Sbjct: 81 LGLVRTFQIPKPFTNLTVLENVLTAADSPGENVYLAGLARRLWLGFEKRAAARAFEILGW 140 Query: 131 VGLSEYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLN 190 VGL R ELSGGQ + + IARA++ ++I DEP A ++ I+E ++ L Sbjct: 141 VGLDHMWDRRSGELSGGQMKLLEIARAIMKGAEMIIMDEPAAGVNPRLAGSIMERIKYLA 200 Query: 191 REEGVTFIFSTHDHETMR-FAERVVHLKDGRI 221 RE+G+TF+ H ++ + +RV + G++ Sbjct: 201 REKGITFLIIEHRIGLVKEYVDRVYAMSMGKV 232 >gi|118431644|ref|NP_148257.2| hypothetical protein APE_1911.1 [Aeropyrum pernix K1] Length = 294 Score = 105 bits (261), Expect = 1e-24 Identities = 76/212 (35%), Positives = 108/212 (50%), Gaps = 17/212 (8%) Query: 17 RTVVHALRG------VSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTD 70 R VV RG V LE+ +GE V L+GP+G GKTTL+ + + R GRVL +G D Sbjct: 8 RGVVKKYRGQPVLDRVDLEVGRGEAVGLVGPNGAGKTTLIKVSLGLARRDGGRVLLNGLD 67 Query: 71 VAGLSDDEEARMRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXXLLAL 130 E R R E +G +F+ NL + V E +E + + Sbjct: 68 PW-----REPRAR-EGVGVVFERPNLPSSMPVVEFLESAAAI----IGSSPSRVDWAIRA 117 Query: 131 VGLSEYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLN 190 GL + +LS G +QR AIA AL+ PR ++ADEPT+NLD + +L + RLN Sbjct: 118 AGLEGHEWKTFPQLSAGLKQRAAIAHALLGEPRFLVADEPTSNLDPLERREVLRLLARLN 177 Query: 191 REEGVTFIFSTH-DHETMRFAERVVHLKDGRI 221 RE G++ + S+H E +R A R+ L GR+ Sbjct: 178 REHGLSLLVSSHVIVELLRVATRIYVLAGGRL 209 >gi|118430985|ref|NP_147131.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 322 Score = 100 bits (248), Expect = 4e-23 Identities = 74/236 (31%), Positives = 116/236 (49%), Gaps = 16/236 (6%) Query: 3 LVELYEVHKDYHLGRTVVHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSG 62 ++ + ++ +Y+ + VV+AL GV L++ QGE +A++G SGCGK+TL + I S Sbjct: 5 VLSIRDLTVNYYTRQGVVNALDGVELDVYQGEILAIVGESGCGKSTLARSIARI--LPSN 62 Query: 63 RVLFDGT-----------DVAGLSDDEEARMRREHIGFIFQ--SFNLIPVLTVAENVEIP 109 V+ G+ D+ LS+DE ++R + + IFQ S L PV V + V Sbjct: 63 AVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSMIFQDPSAALSPVHKVKKQVTDH 122 Query: 110 LVLKXXXXXXXXXXXXXLLALVGLSEYASHRPDELSGGQRQRVAIARALVHNPRLVIADE 169 + + L + P ELSGG +QR+ IA +L+ PR++IADE Sbjct: 123 VSGEKRRVEKIAQEILKKLMMPAPHMILEKYPHELSGGMKQRIVIAASLITRPRIIIADE 182 Query: 170 PTANLDSETGKGILEEMRRLNREEGVTFIFSTHD-HETMRFAERVVHLKDGRIHDV 224 PT LD IL+ + RL E T I TH+ A+R+ + G + +V Sbjct: 183 PTTALDVTVQAQILKMLSRLREELETTIILITHNLAVAAEIADRIAVMYAGHVVEV 238 >gi|14600407|ref|NP_146921.1| phosphate ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 253 Score = 98.6 bits (244), Expect = 1e-22 Identities = 67/213 (31%), Positives = 105/213 (49%), Gaps = 16/213 (7%) Query: 21 HALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCI-----DRPTSGRVLFDGTDVAGLS 75 H L+G+S + G A+MGPSG GK+TL+ ++ + G V + +V Sbjct: 19 HILKGISFKAQPGTVTAIMGPSGSGKSTLIRVINRLIDLIPGARVEGEVWINNMNVM--- 75 Query: 76 DDEEARMRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXXLLALV---- 131 E+ R + G +FQ N P +T+ ENV I L AL Sbjct: 76 -KEDPYNIRRYTGMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEIVEWALKMAHL 134 Query: 132 --GLSEYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRL 189 + + S P +LSGGQRQR+++ARAL PR+++ DEPTAN+D + I + + Sbjct: 135 WDEVKDRLSDYPHQLSGGQRQRLSLARALALKPRVLLLDEPTANIDPVSTVKIEQSIVEY 194 Query: 190 NREEGVTFIFSTH-DHETMRFAERVVHLKDGRI 221 +EE T I TH + R +++++ L +GR+ Sbjct: 195 AKEEMATVIIVTHTPQQAARISDQILFLYEGRV 227 >gi|118431929|ref|NP_148704.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 330 Score = 98.2 bits (243), Expect = 2e-22 Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 11/221 (4%) Query: 2 ALVELYEVHKDYHLGRTVVHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTS 61 A+V E+ KDY R A+ GVS IA+GE +L+GP+G GKTT + ++ + RPTS Sbjct: 5 AMVVAEELVKDYGGFR----AVDGVSFRIARGELFSLLGPNGAGKTTTIKMLSTLLRPTS 60 Query: 62 GRVLFDGTDVAGLSDDEEARMRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXX 121 G +AG S E R IG + Q ++ +NV I L Sbjct: 61 GEAW-----IAGYSIVREPGNVRRVIGLVPQDLTADDEMSGWDNVYIQARLYGLPSSEAR 115 Query: 122 XXXXXLLALVGLSEYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKG 181 +L + L E A R SGG R+++ IA +LVH+P+++ DEPT LD + + Sbjct: 116 ERTREVLDYLDLMEAAHRRVATYSGGMRRKLEIAMSLVHSPKVLFLDEPTLGLDVHSRRS 175 Query: 182 ILEEMRRLNREEGVTFIFSTH-DHETMRFAERVVHLKDGRI 221 + + L R VT + +TH E ++RV + GRI Sbjct: 176 LWRYIEDLKR-SAVTILLTTHYMEEAEMLSDRVAIIDRGRI 215 >gi|14601496|ref|NP_148035.1| peptide ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 377 Score = 97.4 bits (241), Expect = 3e-22 Identities = 75/229 (32%), Positives = 109/229 (47%), Gaps = 28/229 (12%) Query: 20 VHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLF------------- 66 V A+ GVS IA+GE L+G SGCGKTT + + + T GRV F Sbjct: 47 VKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERR 106 Query: 67 ------DG-TDVAGLSDDEEARMRREHIGFIFQS--FNLIPVLTVAENVEIPLVLKXXXX 117 DG D+ + + +RRE + ++Q +L P T+ +E PL++ Sbjct: 107 GVKSLGDGFVDLLAVPRRKFKPLRRE-LQIVYQDPYGSLNPRFTIKRILEDPLLIHSIGN 165 Query: 118 XXXXXXXXXLLA----LVGLSEYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTAN 173 + L S++ P +LSGGQRQRVAIARA + NP LV+ADEP + Sbjct: 166 AREREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVSM 225 Query: 174 LDSETGKGILEEMRRLNREEGVTFIFSTHDHETMRF-AERVVHLKDGRI 221 LD ILE + + G + +F THD R+ +R+ + G+I Sbjct: 226 LDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKI 274 >gi|14602114|ref|NP_148662.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 323 Score = 97.1 bits (240), Expect = 3e-22 Identities = 73/225 (32%), Positives = 111/225 (49%), Gaps = 13/225 (5%) Query: 4 VELYEVHKDYHLG-----RTVVHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDR 58 VE + K+Y +G + AL GV L++ +G +L+GP+G GKTTL+ I+ + Sbjct: 5 VEAEALVKEYRMGLLPWRARTIRALDGVDLKVGRGTLFSLLGPNGAGKTTLVKILSTLLL 64 Query: 59 PTSGRVLFDGTDVAGLSDDEEARMRREHIGFIFQSFN-LIPVLTVAENVEIPLVLKXXXX 117 P SG G DV EA R IG + L L+ +N+ L Sbjct: 65 PDSGWARVAGFDVV-----REANNVRSRIGVVLGGERALYWRLSGWDNLWFFSQLYGIPP 119 Query: 118 XXXXXXXXXLLALVGLSEYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSE 177 LL +VGL E+A R + S G +QR+ IAR L+++P +++ DEPT LD + Sbjct: 120 REAKRRVKELLEIVGLEEWAHVRVENYSKGMKQRLHIARGLINDPEVLLLDEPTIGLDPK 179 Query: 178 TGKGILEEMRRLNREEGVTFIFSTHDH-ETMRFAERVVHLKDGRI 221 + + +RR+ R EG T + +TH E ++RV + GRI Sbjct: 180 AAREVRSIIRRIVR-EGRTVLLTTHYMVEAEELSDRVAIISKGRI 223 >gi|118431503|ref|NP_148015.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 300 Score = 96.3 bits (238), Expect = 6e-22 Identities = 70/207 (33%), Positives = 103/207 (49%), Gaps = 10/207 (4%) Query: 16 GRTVVHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLS 75 GRT A+ GVS + GE +MGP+G GKTTLL +V + RP+ G V G DV G Sbjct: 16 GRT---AVAGVSFSVGDGERACIMGPNGSGKTTLLRMVSGVLRPSGGSVRVCGYDVWG-- 70 Query: 76 DDEEARMRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXXLLALVGLSE 135 + R R IGF Q + +T AE + + L +L ++G + Sbjct: 71 --DGWREARGLIGFAPQDPPMARRMTGAEYITVVGGLLGLSPGVARREARRVLEMLGFED 128 Query: 136 YASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLNREEGV 195 LSGGQR+ + IA AL NP +V+ DEP + LD + + +R+ + G Sbjct: 129 VLGRVVARLSGGQRRALGIALALASNPEVVVLDEPGSGLDVRARESLWASLRKAFK--GR 186 Query: 196 TFIFSTHD-HETMRFAERVVHLKDGRI 221 T +FS+HD E ++RV+ + GR+ Sbjct: 187 TVLFSSHDPQEAEAESDRVLIMHRGRL 213 >gi|118431913|ref|NP_148669.2| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 239 Score = 95.5 bits (236), Expect = 1e-21 Identities = 65/201 (32%), Positives = 99/201 (49%), Gaps = 5/201 (2%) Query: 20 VHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSDDEE 79 + AL+GVS + +GE V L+GP+G GKTTL NI+ I P GRV++ G D+ G Sbjct: 17 IEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIYKGVDITGW---PA 73 Query: 80 ARMRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXXLLALVGLSEYASH 139 R R I FQ + LTV NV + +L+ + +VGL+ Sbjct: 74 YRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAMEAIDMVGLAGKEDI 133 Query: 140 RPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLNREEGVTFIF 199 +L+ +++R+ +ARAL P L++ DE A L ++ + +++ G+T I Sbjct: 134 LAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTLLEISK-RGITIIM 192 Query: 200 STH-DHETMRFAERVVHLKDG 219 H M FAERV+ L G Sbjct: 193 VEHVMRAVMNFAERVIVLHFG 213 >gi|118430984|ref|NP_147130.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 419 Score = 94.7 bits (234), Expect = 2e-21 Identities = 78/260 (30%), Positives = 119/260 (45%), Gaps = 42/260 (16%) Query: 4 VELYEVHKDYHLGRTV--VHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTS 61 V +Y ++L + + V A+ GVSL + +GE + ++G SG GKTTL + + RP + Sbjct: 9 VRVYFPITTFYLKKVIGYVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKTIIGLHRPFT 68 Query: 62 GRVLFD------------------GTDVAGLSDDEEARMRREHIGFIFQSFN-------- 95 G V D G +V ++ + H + N Sbjct: 69 GHVFIDIDKGELEEAVSIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRSNYKKFRRKV 128 Query: 96 ----------LIPVLTVAENVEIPLVLKXXXXXXXXXXXXXL--LALVGLS-EYASHRPD 142 L P + V E + P+ + + L VGL E+A P Sbjct: 129 QMVQQDPYSSLNPRMKVGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGLGKEFADRYPY 188 Query: 143 ELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLNREEGVTFIFSTH 202 ELSGGQRQRVAIARAL NP++++ DEPT+ LD IL +R L ++ G+T++ TH Sbjct: 189 ELSGGQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLRELWKKYGLTYLLITH 248 Query: 203 DHETMRF-AERVVHLKDGRI 221 D +R+ + VV + G+I Sbjct: 249 DISVVRYMSSSVVVMYSGKI 268 >gi|14602122|ref|NP_148670.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 240 Score = 94.4 bits (233), Expect = 2e-21 Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 4/201 (1%) Query: 22 ALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSDDEEAR 81 AL GVSL + +GE VAL+G +G GKTT L + + +P +G +++ G D+ GL + Sbjct: 21 ALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLKPRNGSIIWQGRDITGLPAFKRV- 79 Query: 82 MRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXXLLALVGLSEYASHRP 141 E I + + + P LTV EN+ + + L S Sbjct: 80 --EEGISHVPEGRGIFPRLTVYENLRVAASTRRAKEHFQDSLEQVYTIFPILKARRSQLA 137 Query: 142 DELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLNREEGVTFIFST 201 LSGG++Q +AIARAL+ P L++ DEP+ L + + ++ RL E GVT + Sbjct: 138 GTLSGGEQQMLAIARALIQRPILLMMDEPSLGLAPKLARDVIYLASRLREELGVTILLVE 197 Query: 202 HD-HETMRFAERVVHLKDGRI 221 + +++ A+R ++ GRI Sbjct: 198 QNVGLSLKVADRGYVMETGRI 218 >gi|14601072|ref|NP_147598.1| branched-chain amino acid ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 237 Score = 91.7 bits (226), Expect = 1e-20 Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 4/211 (1%) Query: 11 KDYHLGRTVVHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTD 70 +D G + L VSLEI +G ++GP+G GK+TLL + GRVLF+ TD Sbjct: 9 EDVSAGYGKLQTLFDVSLEIPRGLITVIVGPNGAGKSTLLKTMFGFTTVYKGRVLFENTD 68 Query: 71 VAGLSDDEEARMRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXXLLAL 130 V + + A++ + FIFQ N+ LTV EN+ + Sbjct: 69 VTHMPPHDRAKI---GMTFIFQLENIFRELTVYENLRL-AGYDLPEDVFRDRLEEVFSMF 124 Query: 131 VGLSEYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLN 190 L E + LSGG+RQ +A+A ++ P++ + DEPTA L + K +L +R LN Sbjct: 125 PRLKERLGQKAGTLSGGERQMLAMAIGIMRKPKVFLIDEPTAGLSPKLAKEVLSYVRILN 184 Query: 191 REEGVTFIFSTHDHETMRFAERVVHLKDGRI 221 +E + + ++ ++ V + +GRI Sbjct: 185 KEGYTVVLVEQNVKASLEIGDKGVLVVNGRI 215 >gi|14601326|ref|NP_147861.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 250 Score = 89.4 bits (220), Expect = 7e-20 Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 19/218 (8%) Query: 20 VHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSDDEE 79 V AL VS+E+ +GE + ++GP+G GKT+LLN++ + +P GRV F G D+ GL + Sbjct: 14 VTALDNVSVEVRRGEILGIIGPNGAGKTSLLNVITGVYKPQRGRVYFKGRDITGLKPHQR 73 Query: 80 ARMRREHIGFIFQSFNLIPVLTVAENVEIPL-------VLKXXX--------XXXXXXXX 124 + + FQ L +TV EN+ + L +L+ Sbjct: 74 ITL---GLSRTFQHSELFHSMTVLENIMVRLHPWTRGSILEKALWAFRAKRWEVEARERA 130 Query: 125 XXLLALVGLSEYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILE 184 ++ L+ L E+ L G +++V +A AL NP +V+ DEP A L E + I+ Sbjct: 131 EHVIDLLDLHEHRHSPIGALPPGIQKKVDLAGALAQNPEVVLMDEPMAGLSKEEKEDIVR 190 Query: 185 EMRRLNREEGVTFIFSTHDHETMR-FAERVVHLKDGRI 221 + + T + HD E + +RVV + G++ Sbjct: 191 AIIETSETMHTTMVLIEHDMEVVTDVCDRVVVMDYGKV 228 >gi|14602163|ref|NP_148711.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 498 Score = 88.2 bits (217), Expect = 2e-19 Identities = 65/206 (31%), Positives = 99/206 (48%), Gaps = 5/206 (2%) Query: 20 VHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSDDEE 79 V AL V + GE AL+G +G GKTTL+ I+ +PT G + G V+ + Sbjct: 26 VKALDNVDFTLRAGEVHALLGENGAGKTTLMRILYGEIKPTMGEIYVWGRKVSWRGPWDA 85 Query: 80 ARMRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXXLLALVGLSEYASH 139 R I ++Q F L+ +TV EN+ I L +GL + Sbjct: 86 I---RNGIAMVYQQFRLVESMTVEENIAIYLSSLGLGRSEARRRTLETAERLGLEIDLAK 142 Query: 140 RPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLNREEGVTFIF 199 +L G RQRV I +AL +++I DEPT+NL + + +R L ++ GV+ ++ Sbjct: 143 TVADLPMGARQRVEIIKALSGGAKVLILDEPTSNLTPLEAEKLFSTLRLL-KDMGVSVVY 201 Query: 200 STHD-HETMRFAERVVHLKDGRIHDV 224 TH E +R A+RV L+ GR+ V Sbjct: 202 ITHKLGEVVRVADRVTVLRRGRVSAV 227 Score = 60.8 bits (146), Expect = 3e-11 Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 16/214 (7%) Query: 20 VHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSDDEE 79 V +R VSLE+ +GE V + G +G G+ L++ + + RP G + G + G D Sbjct: 275 VERVREVSLEVREGEIVGIAGVAGNGQEELVDAIIGLRRPVRGSIEVQGRRIEGSLD--- 331 Query: 80 ARMRREHIGFIFQSFNLIPVL--TVAENVEI-------PLVLKXXXXXXXXXXXXXLLAL 130 R G+I + + +VAEN+ L+L+ L Sbjct: 332 --FYRAGGGYIAGDRGKVLAMDYSVAENIAFLYYTASKTLLLRRSRLEDLFRRLVERFRL 389 Query: 131 VGLSEYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLN 190 V S + LSGG +Q+V + ++ +L++A PT LD T + + L Sbjct: 390 VARSPWTP--VGRLSGGNQQKVIVGSEVLRGFKLLVAVNPTQGLDIATTSFVRNLLSELA 447 Query: 191 REEGVTFIFSTHDHETMRFAERVVHLKDGRIHDV 224 R+ + ST E + ++R+ + GR+ V Sbjct: 448 RQGAGILLVSTDLDEILELSDRIYVMSGGRVTGV 481 >gi|118431401|ref|NP_147855.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 260 Score = 86.7 bits (213), Expect = 5e-19 Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 15/225 (6%) Query: 3 LVELYEVHKDYHLGRTVVHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCI-----D 57 L+ + V YH + ++ +SL + +G L+GP+G GKTTLL V + Sbjct: 4 LLNVSNVEIMYH---PFILVIKNLSLSVEKGSITCLIGPNGAGKTTLLKAVSGVIKYERG 60 Query: 58 RPTSGRVLFDGTDVAGLSDDEEARMRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXX 117 R T G + +G D+ DE AR + ++ + + LT EN+ + + Sbjct: 61 RVTRGSIQLEGEDITNREPDEIAR---RGVIYVMEGRRIFKELTTEENL---VSVAYAAG 114 Query: 118 XXXXXXXXXLLALVGLSEYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSE 177 L L E + LSGG++Q +AIA AL++ P+L++ DEP+ L + Sbjct: 115 ASRDDIRSVLSYFPRLKERLGEKAGNLSGGEQQMLAIAMALLYRPKLLMLDEPSLGLAPK 174 Query: 178 TGKGILEEMRRLNREEGVTFIFSTHD-HETMRFAERVVHLKDGRI 221 I ++ L+REEG+T + + + + + ++ +++GRI Sbjct: 175 ITSQIYATIKMLHREEGLTILLAEQNARKALEISDYGYVIENGRI 219 >gi|118431315|ref|NP_147690.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 249 Score = 85.9 bits (211), Expect = 8e-19 Identities = 66/206 (32%), Positives = 98/206 (47%), Gaps = 20/206 (9%) Query: 23 LRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSDDEEARM 82 LRGVS + G VAL+GP+G GKTTLL ++ I +P+ GRV +V G RM Sbjct: 22 LRGVSFSLDPGSLVALLGPNGSGKTTLLRLLAGIIKPSRGRV-----EVCGSPPGRVRRM 76 Query: 83 RREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXX------XXXXXLLALVGLSEY 136 +G+ S + P L + VE+ L+ + L +G+ E Sbjct: 77 ----LGYAPASPEVDPRL---KAVEVALLYRYGVSEGVAWGRRDWEEVLAALGEMGVGEL 129 Query: 137 ASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLNREEGVT 196 A R ELS GQR+ V +A L P L + DEP + LD + + +R L T Sbjct: 130 AWRRWGELSSGQRRLVILAGVLARRPGLALLDEPHSFLDVSNMRRVTLVLRSLRGR--AT 187 Query: 197 FIFSTHDHETMRFAERVVHLKDGRIH 222 +++THD A+ V+ L++G +H Sbjct: 188 IVYTTHDPLAAMAADSVIMLREGLLH 213 >gi|14601383|ref|NP_147919.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 333 Score = 83.6 bits (205), Expect = 4e-18 Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 17/236 (7%) Query: 3 LVELYEVHKDYHLGRTVVHALRGVSLEIAQGEFVALMGPSGCGKTT----LLNIVGCIDR 58 ++E+ + ++ +V A+ VS I +GE L+G +GCGK+ L ++ R Sbjct: 9 IIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGR 68 Query: 59 PTSGRVLF-----DGTDVAGLSDDEEARMRREHIGFIFQ--SFNLIPVLTVAENVEIPLV 111 G++ + D+ L + E R+R E I +IFQ S L P+ T+ V ++ Sbjct: 69 IVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGETML 128 Query: 112 LKXXXXXXXXXXXXXLLALVGL-----SEYASHRPDELSGGQRQRVAIARALVHNPRLVI 166 + L + + P ELSGG +QR I +L + P+L+I Sbjct: 129 AHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLLI 188 Query: 167 ADEPTANLDSETGKGILEEMRRLNREEGVTFIFSTHDHETM-RFAERVVHLKDGRI 221 ADEPT LD I++ + +L RE G+T + TH+ + + +RV + G I Sbjct: 189 ADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNI 244 >gi|118431305|ref|NP_147673.2| heme exporter protein A [Aeropyrum pernix K1] Length = 211 Score = 82.0 bits (201), Expect = 1e-17 Identities = 65/199 (32%), Positives = 94/199 (47%), Gaps = 15/199 (7%) Query: 23 LRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSDDEEARM 82 LRGVSL + GE V + G +G GKTTLL + + P+ GRV + R Sbjct: 20 LRGVSLALGPGEAVVVSGANGSGKTTLLRLSAGLAEPSRGRVSWGCP-----------RG 68 Query: 83 RREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXXLLALVGLSEYASHRPD 142 R +G++ + + LTV ENVE L L+GL +Y SH Sbjct: 69 PRGCVGYVGHTPMVYGDLTVWENVEFFSSLHGGSLGDYPLAAEAW-RLLGLEKYGSHLAS 127 Query: 143 ELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLNREEGVTFIFSTH 202 +LS G R+R+ + RAL+ PRL++ DE LD + L + RL EG+ + +T Sbjct: 128 QLSFGWRRRLDVVRALLGEPRLLLLDEAFTGLDQGASEA-LSRLLRLALGEGLALLMTTP 186 Query: 203 --DHETMRFAERVVHLKDG 219 + + A RV L+DG Sbjct: 187 LLEPRYLGLASRVYTLQDG 205 >gi|14601655|ref|NP_148196.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 345 Score = 80.5 bits (197), Expect = 3e-17 Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 10/209 (4%) Query: 17 RTVVHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSD 76 R VV AL+GVS + +GE + +GP+G GKTT + I+ + P G G DV Sbjct: 22 RRVVEALKGVSFSVYEGEIYSFLGPNGAGKTTTVRILSTLLDPDGGEARVAGFDVV---- 77 Query: 77 DEEARMRREHIGFIFQ-SFNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXXLLALVGLSE 135 +E R+ IG + LT EN+ + +L LVGL++ Sbjct: 78 -KERWEVRKRIGVMLSVERGFYWKLTGRENLYYFGRIYGIPQGELKSRIKEVLDLVGLTD 136 Query: 136 Y-ASHRP-DELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLNREE 193 + +P +E+S G + R+ +AR L+ +P ++I DEPT LD + + I +R L E Sbjct: 137 LGGADKPFEEMSLGMKARLGLARVLLKDPEVLILDEPTLGLDPASARTIRGVIRSL-ASE 195 Query: 194 GVTFIFSTHDH-ETMRFAERVVHLKDGRI 221 G T +TH+ E ++RV + GRI Sbjct: 196 GRTIFITTHNMVEAEMISDRVGIIIGGRI 224 >gi|14600419|ref|NP_146933.1| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 492 Score = 79.3 bits (194), Expect = 7e-17 Identities = 57/209 (27%), Positives = 96/209 (45%), Gaps = 6/209 (2%) Query: 20 VHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSDDEE 79 VHAL+GV+ G AL+G +G GKTTLL + + +P GR+L DG ++ + Sbjct: 18 VHALKGVTASFPAGVVTALLGENGAGKTTLLKAIMGVVKPRKGRILVDGYELRPKGPGDS 77 Query: 80 ARMRREHIGFIFQSFNLIPVLTVAENVEIPLVL--KXXXXXXXXXXXXXLLALVGLSEYA 137 R I Q+ + P + E++ + L++ + +GL+ Sbjct: 78 L---RSGIYMASQNPPVYPGIKAYEDLAVTLMVAGRKAGLRQARTMLAEASEALGLNIDP 134 Query: 138 SHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLNREEGVTF 197 E+ +RQR+ + +AL R V+ DEPT +L E +LE RL Sbjct: 135 DRYLGEMGFSERQRLEVIKALALGSRAVLLDEPTTHLTPEEAARMLEAAGRLAASGAAVL 194 Query: 198 IFSTHDHETMRFAERVVHLKDG-RIHDVP 225 + + E M A+R+V L+ G ++++ P Sbjct: 195 LVTHRIGEAMEHADRLVILRKGVKVYEGP 223 Score = 68.9 bits (167), Expect = 1e-13 Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 5/181 (2%) Query: 23 LRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSDDEEARM 82 LR LE+ QGE V + G +G G+ L ++ + +P GR+L G DV R+ Sbjct: 270 LRMARLEVRQGEVVGVAGVAGNGQEELFEVIVGLRKPAKGRILIAGVDVTRAPPLARRRL 329 Query: 83 RREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXXL----LALVGLSEYAS 138 I L+P ++A N+ + + L + +G+ + Sbjct: 330 GLGVIPEERLGHALVPGESIAFNIALSIHTARDGFIVDWRYYEKLAEEMIRDMGIKAVSP 389 Query: 139 HRP-DELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLNREEGVTF 197 + DELSGG QR+ +AR L PRL++A P A LD E + + E MR + GV Sbjct: 390 RQMVDELSGGNMQRLVLARELWLKPRLLVAMNPAAGLDLEGQQAVAEMMRMSSERGGVLV 449 Query: 198 I 198 I Sbjct: 450 I 450 >gi|118431062|ref|NP_147257.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 303 Score = 74.3 bits (181), Expect = 2e-15 Identities = 59/201 (29%), Positives = 87/201 (43%), Gaps = 11/201 (5%) Query: 20 VHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSDDEE 79 V ALRGVS + GE +GP+G GKTT + ++ RPTSG G ++ + Sbjct: 17 VEALRGVSFSVLSGEVFGYLGPNGAGKTTTIRVLMGFSRPTSGSARVFGVELY----NPG 72 Query: 80 ARMRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXXLLALVGLSEYASH 139 A R +G++ F ++ ++ L L ++ Sbjct: 73 ASGVRRRVGYVPGEFEFYGGVSGGRMLDYWCRLVGGCSRGVVRELLEAFPLPLERAVGTY 132 Query: 140 RPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLNREEGVTFIF 199 S G +Q +A+ A H P LV+ DEPT LD +G + + R EGVT F Sbjct: 133 -----SRGMKQMLALVMAFSHEPDLVVMDEPTTGLD-PLARGRVLDFVRSKAREGVTVFF 186 Query: 200 STHD-HETMRFAERVVHLKDG 219 S+H E R A+RV L+ G Sbjct: 187 SSHVLSEVQRVADRVGLLRSG 207 >gi|118431094|ref|NP_147305.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 247 Score = 73.9 bits (180), Expect = 3e-15 Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 12/184 (6%) Query: 23 LRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSDDEEARM 82 L GV+LE V ++GP+G GKTT L + + +P GRV DG + G M Sbjct: 18 LSGVNLEFRGPGLVQIIGPNGAGKTTFLKAILGLIKPARGRVFLDGFEATG-----RPEM 72 Query: 83 RREHIGFIFQ--SFNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXXLLALVGL-SEYASH 139 + G++ Q S + +TV E VE L L+ +L +G+ E Sbjct: 73 VGRYAGYVPQNPSAPKLSPMTVREFVETSLRLR--GVTRARERAVEVLHTLGIRGEVLES 130 Query: 140 RPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLNREEGVTFIF 199 R ELS G QRV IARA+ +P++++ DEP A++D I + L RE V + Sbjct: 131 RLWELSMGMLQRVFIARAIAPDPKMLVMDEPLASVDPAGRMEIARIIAGLARERLV--LM 188 Query: 200 STHD 203 ++HD Sbjct: 189 TSHD 192 >gi|118431432|ref|NP_147907.2| hypothetical protein APE_1380.1 [Aeropyrum pernix K1] Length = 312 Score = 65.9 bits (159), Expect = 8e-13 Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 8/183 (4%) Query: 21 HALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSDDEEA 80 +A R V G + ++GP+G GKTTLL + + +P++G +L +G + S E Sbjct: 18 YAYRNVEFTFTSG-ILGVLGPNGAGKTTLLKTILGLVKPSAGEILVEGVNPR--SPGFEK 74 Query: 81 RMRREHIGFIFQSFNLIPVLTV-AENVEIPLVLKXXXXXXXXXXXXXLLALVGLSEYASH 139 + R IG++ ++P+ T +E L+ L +VGL+ Sbjct: 75 LLPR--IGYV-PELPVVPLWTTPCILLETLARLEGYTSVEARVRAREALEVVGLAGECET 131 Query: 140 RPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLNREEGVTFIF 199 +LS G R+RV +A+A + L++ DEP + LD E + E +R + R EG T I Sbjct: 132 PIGKLSKGARKRVLVAQAFIGERELLVLDEPYSGLDPEWVYRVRELLRTVAR-EGATVIV 190 Query: 200 STH 202 S+H Sbjct: 191 SSH 193 >gi|118431385|ref|NP_147827.2| hypothetical protein APE_1255.1 [Aeropyrum pernix K1] Length = 249 Score = 64.3 bits (155), Expect = 2e-12 Identities = 52/200 (26%), Positives = 80/200 (40%), Gaps = 8/200 (4%) Query: 23 LRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSDDEEARM 82 L+ VSL + +G ++GP+G GKTTL + + R GRV G V R Sbjct: 24 LKDVSLTVPRGSVYGVVGPNGAGKTTLFRTLLGLYRADRGRVALLGEPVERAGGSLFRR- 82 Query: 83 RREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXXLLALVGLSEYASHRPD 142 + ++ + P + + + L L GL R Sbjct: 83 ----VAYLPEDGE--PYRNMTGHEFLRLYASIYGVEDLEGYLEEASRLSGLGGRLGERVR 136 Query: 143 ELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLNREEGVTFIFSTH 202 S G R+R+ +A L P L + DEPTA LD GI ++ + GVT + S+H Sbjct: 137 SYSKGMRRRLLVAAMLALKPSLAVLDEPTAGLDPVYSVGIRRLLKEYSERHGVTVLLSSH 196 Query: 203 D-HETMRFAERVVHLKDGRI 221 + +E + + GRI Sbjct: 197 NMYEVESVCSEITMISSGRI 216 >gi|118431649|ref|NP_148266.2| ABC transporter ATP-binding protein [Aeropyrum pernix K1] Length = 255 Score = 63.9 bits (154), Expect = 3e-12 Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 9/183 (4%) Query: 23 LRGVSLEIAQGEFVALMGPSGCGKTTLLNI-VGCIDRPTSGRVLFDGTDVAGLSDDEEAR 81 LRGVSL + GE L G +G GKTT L + VG + R SG G D G + R Sbjct: 30 LRGVSLSVKFGEIHVLAGLNGAGKTTSLRVLVGLLSRD-SGEARVLGVDPWGGGFE---R 85 Query: 82 MRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXXLLALVGLS-EYASHR 140 ++ E +G++ + ++ LT EN+ L + GLS E + R Sbjct: 86 VKGE-VGYLPEDASVYERLTGMENILFYARLYSGWRDVEELVENAVF-YSGLSREDLARR 143 Query: 141 PDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLNREEGVTFIFS 200 S G ++R+ + L+ PRLV+ DEPT+ +D I + +R L+R EG + + Sbjct: 144 AGGYSKGMKRRLLLGITLMSKPRLVVLDEPTSGVDPIASNRIKKILRGLSR-EGRAILVT 202 Query: 201 THD 203 THD Sbjct: 203 THD 205 >gi|118431807|ref|NP_148503.2| hypothetical protein APE_2272.1 [Aeropyrum pernix K1] Length = 657 Score = 63.5 bits (153), Expect = 4e-12 Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 37/217 (17%) Query: 5 ELYEVHKDYHLGRTVV--HALRGVSLEIAQGEFVALMGPSGCGKTTLLNIV--------G 54 EL +V + + R VV + L+ V++ + G A++G SG GKTTLL ++ G Sbjct: 436 ELQDVLRAFGAERRVVERYVLKDVNITVNPGSVAAVVGASGAGKTTLLRMILGKALGIGG 495 Query: 55 CIDRPTSGRVLFD-GTDVAGLSDDEEARMRREHIGFIFQSFNLIPVLT-VAENVEIPLVL 112 RP SG V T A L E + SF +L VA + P Sbjct: 496 EGYRPDSGVVKIPTNTKAAALLPGE-----------LEPSFGGETLLEHVASKLGDP--- 541 Query: 113 KXXXXXXXXXXXXXLLALVGLSEYASHRPD--ELSGGQRQRVAIARALVHNPRLVIADEP 170 +L+ VGL + R ELS GQ++R +A L P L++ DE Sbjct: 542 ---------GAAVEVLSSVGLGDAIFFRASFGELSTGQKERAKLASLLAERPNLLVIDEF 592 Query: 171 TANLDSETGKGILEEMRRLNREEGVTFIFSTHDHETM 207 A+LD T + I ++ +L R +G+T I ST+ E + Sbjct: 593 MAHLDPLTARRIARKLGKLARSKGITLIVSTNRPEIL 629 >gi|118431861|ref|NP_148587.2| hypothetical protein APE_2406.1 [Aeropyrum pernix K1] Length = 226 Score = 61.6 bits (148), Expect = 2e-11 Identities = 63/206 (30%), Positives = 95/206 (46%), Gaps = 32/206 (15%) Query: 18 TVVHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSDD 77 TV LR V+L I +G A++G +G GKTTLL + + +P G V +G G Sbjct: 2 TVRGRLRDVTLSIPRG-VTAILGANGSGKTTLLKLAARLLKPDRGSV--EGPRRVG---- 54 Query: 78 EEARMRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXXLLALVGLSEYA 137 A ++ ++GF+ TVAE++ LL GL EYA Sbjct: 55 --AALQNPYLGFLGP--------TVAEDL--------ARTAGGRGEALKLLREAGL-EYA 95 Query: 138 SHR-PDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLNREEGVT 196 S R P LS G+ + +++ A+ P V+ DEPT+ LD + + + RL GV Sbjct: 96 SERSPYTLSMGEARILSVLMAISWGPEAVVIDEPTSGLDGSGKRWLASLIARL----GVP 151 Query: 197 FIFSTHDHE-TMRFAERVVHLKDGRI 221 + + HD + A V L+DGR+ Sbjct: 152 VLVAGHDIDFAAAVAGWAVILRDGRV 177 >gi|118431862|ref|NP_148588.2| hypothetical protein APE_2408.1 [Aeropyrum pernix K1] Length = 237 Score = 61.2 bits (147), Expect = 2e-11 Identities = 64/220 (29%), Positives = 96/220 (43%), Gaps = 17/220 (7%) Query: 1 MALVELYEVHKDYHLGRTVVHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGCIDRPT 60 M++V L +V Y G V LRGVSLE +G L GP+G GK+T+L + + Sbjct: 1 MSVVRLRDVWYRYPGGGWV---LRGVSLEAPRG-ITLLAGPTGGGKSTILRVAAGLATRI 56 Query: 61 SGRVLFDGTDVAGLSDDEEARMRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXX 120 G L + G + + +++ FI LT E +E Sbjct: 57 YGGYLRGEVEARG----KPVLVPQDYDLFILS-------LTPREELEYCYEASGLPPWEA 105 Query: 121 XXXXXXLLALVGLSEYASHRPDELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGK 180 L +G+ + R +LS G+RQRVAIA AL +++ DEP A D + Sbjct: 106 RREAVRLAEELGIEDLLDRRVSKLSAGERQRVAIASALALGAEVLLMDEPLAYQDPLGVE 165 Query: 181 GILEEMRRLNREEGVTFIFSTHDHETMRFAERVVHLKDGR 220 ++ +RRL+ EGV + H + A V + DGR Sbjct: 166 SLIRLLRRLD-VEGVV-VAEHRVHYLLPAASSVYLVYDGR 203 >gi|118431333|ref|NP_147723.2| ATPase RIL [Aeropyrum pernix K1] Length = 614 Score = 53.9 bits (128), Expect = 3e-09 Identities = 48/174 (27%), Positives = 71/174 (40%), Gaps = 21/174 (12%) Query: 33 GEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSDDEEARMRREHIGFIFQ 92 GE + + GP+G GKTT + + +P G V +D + ++I Sbjct: 383 GEVIGVAGPNGIGKTTFVRTLAGALKPVEGAVY-------PYVEDLRVSYKPQYI----- 430 Query: 93 SFNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXXLLALVG---LSEYASHRPDELSGGQR 149 S +P TV + VLK L LV L + R LSGG+ Sbjct: 431 SPESLPDATVEQ------VLKAANPAILAPGSWLNLELVKRMRLDKLLERRVRTLSGGEL 484 Query: 150 QRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLNREEGVTFIFSTHD 203 Q+VA+A AL + + DEP+A LD E G+ +RR+ + HD Sbjct: 485 QKVAVAAALAREADVYLLDEPSAYLDVEERVGVARAIRRIVETREAAALVVEHD 538 Score = 47.4 bits (111), Expect = 3e-07 Identities = 54/202 (26%), Positives = 84/202 (41%), Gaps = 25/202 (12%) Query: 32 QGEFVALMGPSGCGKTTLLNIVGCIDRPTSGRVLFDGTDVAGLSDDEEARMRREHIGFIF 91 +G+ V L+G +G GKTT L I+ +P GRV +G + D+ R R + F Sbjct: 105 EGQVVGLLGRNGTGKTTALRILAGELKPNLGRV--EGGEPEW--DEILKRFRGSELQTYF 160 Query: 92 QSFNLIPVLTVAENVE----IPLVLKXXXXXXXXXXXXXLLAL-----VGLSEYASHRPD 142 + + L VA ++ +P LK +AL VGL + Sbjct: 161 RKL-VDGKLRVAHKIQYVELVPRRLKGRVRDLLKRADERGVALELAEQVGLDKVFDRDVR 219 Query: 143 ELSGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGILEEMRRLN-----REEGVTF 197 +LSGG+ Q++ I L + + I DEP++ LD I E MR G Sbjct: 220 QLSGGELQKMLIVAVLSRDANVYIFDEPSSYLD------IRERMRMARLIAGAARPGAYV 273 Query: 198 IFSTHDHETMRFAERVVHLKDG 219 + HD + + +VH+ G Sbjct: 274 MVVEHDLAVLDYVSDLVHILYG 295 >gi|14601569|ref|NP_148109.1| ATPase involved in Fe-S cluster formation SufC [Aeropyrum pernix K1] Length = 253 Score = 53.5 bits (127), Expect = 4e-09 Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 21/221 (9%) Query: 15 LGRTVVHALRGVSLEIAQGEFVALMGPSGCGKTTLLNIVGC--IDRPTSGRVLFDGTDVA 72 +G VV L V ++ GE A+MGP+G GK++L ++ I G +L DG + Sbjct: 12 IGEKVV--LNKVDFDLKYGEVHAVMGPNGSGKSSLGYVIMGREIYEVVEGDILLDGESIK 69 Query: 73 GLSDDEEARMRREHIGFIFQSFNLIPVLTVAENVEIPLVLKXXXXXXXXXXXXXLLAL-- 130 L +E A + I Q IP + ++ + I V K + Sbjct: 70 ELPPEERAL---KGIFMAQQDPPQIPGVRLSSLI-IAFVNKRLGAQDLSKPADPKIVKRM 125 Query: 131 ------VGLSEYASHRPDEL--SGGQRQRVAIARALVHNPRLVIADEPTANLDSETGKGI 182 +GL +R + SGG+++R + +A++ +P++VI DEP + LD + K + Sbjct: 126 YEYATKLGLDREILNREVNVGFSGGEKKRSELLQAMIFDPKIVILDEPDSGLDIDGLKIV 185 Query: 183 LEEMRRLNREEGVTFIFSTHDHETMRFAE--RVVHLKDGRI 221 E +++L R+ G + TH + F E RV L G + Sbjct: 186 AEFIKQL-RDSGRGVMLITHYARLLNFVEPDRVTVLYRGSV 225 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.322 0.139 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 212,967 Number of Sequences: 1700 Number of extensions: 8869 Number of successful extensions: 158 Number of sequences better than 1.0e-04: 41 Number of HSP's better than 0.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 60 Number of HSP's gapped (non-prelim): 51 length of query: 225 length of database: 492,079 effective HSP length: 74 effective length of query: 151 effective length of database: 366,279 effective search space: 55308129 effective search space used: 55308129 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719910|ref|YP_003875442.1| hypothetical protein STHERM_c22470 [Spirochaeta thermophila DSM 6192] (237 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.323 0.146 0.522 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 179,407 Number of Sequences: 1700 Number of extensions: 5082 Number of successful extensions: 12 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 237 length of database: 492,079 effective HSP length: 74 effective length of query: 163 effective length of database: 366,279 effective search space: 59703477 effective search space used: 59703477 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719911|ref|YP_003875443.1| hypothetical protein STHERM_c22480 [Spirochaeta thermophila DSM 6192] (247 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 278,065 Number of Sequences: 1700 Number of extensions: 12836 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 0 length of query: 247 length of database: 492,079 effective HSP length: 75 effective length of query: 172 effective length of database: 364,579 effective search space: 62707588 effective search space used: 62707588 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719912|ref|YP_003875444.1| hypothetical protein STHERM_c22490 [Spirochaeta thermophila DSM 6192] (104 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value gi|118431464|ref|YP_874895.1| HTH-type transcriptional regulator... 38 7e-05 >gi|118431464|ref|YP_874895.1| HTH-type transcriptional regulator LysM [Aeropyrum pernix K1] Length = 141 Score = 37.7 bits (86), Expect = 7e-05 Identities = 18/42 (42%), Positives = 29/42 (69%) Query: 16 LSLITILYRDGRASFLGLKRALGLTDGALYAHLEKLVRAGYV 57 L L++IL R+ RAS+ + R LG+T+ A+ +++LVR G V Sbjct: 11 LKLLSILKRNSRASYSYIARELGITESAVRKRIKRLVRLGVV 52 Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.325 0.143 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,287 Number of Sequences: 1700 Number of extensions: 4297 Number of successful extensions: 18 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 1 length of query: 104 length of database: 492,079 effective HSP length: 64 effective length of query: 40 effective length of database: 383,279 effective search space: 15331160 effective search space used: 15331160 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 85 (37.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719913|ref|YP_003875445.1| hypothetical protein STHERM_c22500 [Spirochaeta thermophila DSM 6192] (211 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.330 0.146 0.494 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 256,808 Number of Sequences: 1700 Number of extensions: 12290 Number of successful extensions: 47 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 211 length of database: 492,079 effective HSP length: 73 effective length of query: 138 effective length of database: 367,979 effective search space: 50781102 effective search space used: 50781102 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719914|ref|YP_003875446.1| chromosome 1-partitioning protein ParB [Spirochaeta thermophila DSM 6192] (287 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.139 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 281,074 Number of Sequences: 1700 Number of extensions: 12090 Number of successful extensions: 54 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 0 length of query: 287 length of database: 492,079 effective HSP length: 76 effective length of query: 211 effective length of database: 362,879 effective search space: 76567469 effective search space used: 76567469 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719915|ref|YP_003875447.1| hypothetical protein STHERM_c22520 [Spirochaeta thermophila DSM 6192] (332 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 329,665 Number of Sequences: 1700 Number of extensions: 14471 Number of successful extensions: 56 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 0 length of query: 332 length of database: 492,079 effective HSP length: 77 effective length of query: 255 effective length of database: 361,179 effective search space: 92100645 effective search space used: 92100645 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719916|ref|YP_003875448.1| hypothetical protein STHERM_c22530 [Spirochaeta thermophila DSM 6192] (27 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.311 0.126 0.309 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,872 Number of Sequences: 1700 Number of extensions: 278 Number of successful extensions: 1 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 27 length of database: 492,079 effective HSP length: 2 effective length of query: 25 effective length of database: 488,679 effective search space: 12216975 effective search space used: 12216975 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 84 (37.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719917|ref|YP_003875449.1| adenosine deaminase [Spirochaeta thermophila DSM 6192] (353 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.321 0.138 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 349,539 Number of Sequences: 1700 Number of extensions: 15097 Number of successful extensions: 36 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 0 length of query: 353 length of database: 492,079 effective HSP length: 78 effective length of query: 275 effective length of database: 359,479 effective search space: 98856725 effective search space used: 98856725 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719918|ref|YP_003875450.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192] (809 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.318 0.136 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 725,522 Number of Sequences: 1700 Number of extensions: 31940 Number of successful extensions: 109 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109 Number of HSP's gapped (non-prelim): 0 length of query: 809 length of database: 492,079 effective HSP length: 84 effective length of query: 725 effective length of database: 349,279 effective search space: 253227275 effective search space used: 253227275 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 96 (41.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719919|ref|YP_003875451.1| DNA gyrase subunit B [Spirochaeta thermophila DSM 6192] (635 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.319 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 583,719 Number of Sequences: 1700 Number of extensions: 24181 Number of successful extensions: 79 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79 Number of HSP's gapped (non-prelim): 0 length of query: 635 length of database: 492,079 effective HSP length: 83 effective length of query: 552 effective length of database: 350,979 effective search space: 193740408 effective search space used: 193740408 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|307719920|ref|YP_003875452.1| hypothetical protein STHERM_c22570 [Spirochaeta thermophila DSM 6192] (412 letters) Database: Aeropyrum_pernix_K1_uid57757.faa 1700 sequences; 492,079 total letters Searching....done ***** No hits found ****** Database: Aeropyrum_pernix_K1_uid57757.faa Posted date: Apr 18, 2012 2:27 PM Number of letters in database: 492,079 Number of sequences in database: 1700 Lambda K H 0.320 0.136 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 369,575 Number of Sequences: 1700 Number of extensions: 14627 Number of successful extensions: 40 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 0 length of query: 412 length of database: 492,079 effective HSP length: 79 effective length of query: 333 effective length of database: 357,779 effective search space: 119140407 effective search space used: 119140407 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits)